Citrus Sinensis ID: 010801
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | 2.2.26 [Sep-21-2011] | |||||||
| Q39247 | 501 | Serine/threonine protein | yes | no | 0.958 | 0.958 | 0.592 | 1e-166 | |
| Q0E2P1 | 525 | Serine/threonine protein | yes | no | 0.944 | 0.900 | 0.573 | 1e-163 | |
| A2X2K3 | 525 | Serine/threonine protein | N/A | no | 0.944 | 0.900 | 0.573 | 1e-163 | |
| Q5Z8Z7 | 581 | Serine/threonine protein | no | no | 0.960 | 0.827 | 0.559 | 1e-160 | |
| Q38821 | 513 | Serine/threonine protein | no | no | 0.964 | 0.941 | 0.559 | 1e-158 | |
| Q12702 | 463 | Protein phosphatase PP2A | yes | no | 0.870 | 0.941 | 0.467 | 1e-119 | |
| Q6DIY3 | 447 | Serine/threonine-protein | yes | no | 0.844 | 0.946 | 0.435 | 1e-108 | |
| P63150 | 447 | Serine/threonine-protein | yes | no | 0.862 | 0.966 | 0.439 | 1e-106 | |
| Q6P1F6 | 447 | Serine/threonine-protein | yes | no | 0.862 | 0.966 | 0.439 | 1e-106 | |
| Q4R7Z4 | 447 | Serine/threonine-protein | N/A | no | 0.862 | 0.966 | 0.439 | 1e-106 |
| >sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 587 bits (1512), Expect = e-166, Method: Compositional matrix adjust.
Identities = 295/498 (59%), Positives = 373/498 (74%), Gaps = 18/498 (3%)
Query: 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
SLEW+ SQ FGER EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE +T +
Sbjct: 15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71
Query: 71 HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
SR +LE Q D+ HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC NG++F
Sbjct: 72 GGSRKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129
Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
+LSTNDKTIK WKV+++K+KKI EM+ P SS N L A+K SF
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189
Query: 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINL 243
G + + + ++ ARC++VY HAHD++INSISN+SD ETF+SADDLR+NL
Sbjct: 190 PGGIPSL--RLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247
Query: 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct: 248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307
Query: 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363
D ++ + E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA
Sbjct: 308 DSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVA 366
Query: 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423
++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL ATGSYSNL R+F GS T+
Sbjct: 367 SYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATL 426
Query: 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP 483
EA KN R+ I A +R S+ ++TR + R+ E+ + + +Y+ ++KLLH+AWHP
Sbjct: 427 EASKNPMRRQIQTPARPSR--SIGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHP 483
Query: 484 TTNLIACANGNSLFFHYA 501
T N IACA NSL+ +YA
Sbjct: 484 TENSIACAAANSLYMYYA 501
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 293/511 (57%), Positives = 372/511 (72%), Gaps = 38/511 (7%)
Query: 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
EW+ +Q FGER E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE +++
Sbjct: 31 EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86
Query: 73 SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
SRSELE+Q D+ HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC N ++F+L
Sbjct: 87 SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145
Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKN 172
STNDKTIK WKV+++KVK+I M+ +S+ N +EK
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKL 202
Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDC 230
+ +N F G ++ + G ++ RC++VY HAHD++INSISNNSD
Sbjct: 203 YNFPNNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDG 258
Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
ET++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 259 ETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKG 318
Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
+RL+D+RQSALCD+ A++ + E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM L
Sbjct: 319 SIRLIDLRQSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTL 377
Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
KLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL ATGSYSNL R+
Sbjct: 378 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 437
Query: 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY 470
F GSA T+EA +N R+ + AR +L++LTR + R+ EN + SY
Sbjct: 438 FGCTPGSAEATTLEASRNPMRRQVANPTRPAR--TLTSLTRAV-RRGGENPGVDANGNSY 494
Query: 471 NLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501
+LS+KLLHLAWHPT N IACA NSL+ +YA
Sbjct: 495 DLSTKLLHLAWHPTENSIACAAANSLYMYYA 525
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 293/511 (57%), Positives = 372/511 (72%), Gaps = 38/511 (7%)
Query: 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
EW+ +Q FGER E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE +++
Sbjct: 31 EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86
Query: 73 SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
SRSELE+Q D+ HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC N ++F+L
Sbjct: 87 SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145
Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKN 172
STNDKTIK WKV+++KVK+I M+ +S+ N +EK
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKL 202
Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDC 230
+ +N F G ++ + G ++ RC++VY HAHD++INSISNNSD
Sbjct: 203 YNFPNNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDG 258
Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
ET++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 259 ETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKG 318
Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
+RL+D+RQSALCD+ A++ + E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM L
Sbjct: 319 SIRLIDLRQSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTL 377
Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
KLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL ATGSYSNL R+
Sbjct: 378 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 437
Query: 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY 470
F GSA T+EA +N R+ + AR +L++LTR + R+ EN + SY
Sbjct: 438 FGCTPGSAEATTLEASRNPMRRQVANPTRPAR--TLTSLTRAV-RRGGENPGVDANGNSY 494
Query: 471 NLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501
+LS+KLLHLAWHPT N IACA NSL+ +YA
Sbjct: 495 DLSTKLLHLAWHPTENSIACAAANSLYMYYA 525
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 563 bits (1452), Expect = e-160, Method: Compositional matrix adjust.
Identities = 288/515 (55%), Positives = 373/515 (72%), Gaps = 34/515 (6%)
Query: 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65
++ ++EW+ +Q FGER E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE +
Sbjct: 23 QQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAR 82
Query: 66 NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125
+ + SR E+E+Q D T HPE+RYK+EFQSHEPEFDYLKSLEIEEKIN++RWC
Sbjct: 83 D----NASRREMERQ-DAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTA 137
Query: 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-----------HFPFVSSENTLLA----- 169
N S+ +LSTNDKTIK WKV+++KVK++ M+ SS LL
Sbjct: 138 NNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCS 197
Query: 170 -EKNFMNEHN--PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 226
+ +F+N PP GY + + +A+ ++ ARC++VY HAHD++INSIS
Sbjct: 198 DKSSFLNSDILFPPG---GYP---SLRLPVVVASQDVNLVARCRRVYAHAHDYHINSIST 251
Query: 227 NSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286
NSD ET++SADDLRINLWNLEI++Q FNIVD+KP NM+DLTEVIT AEFHP +CN LAYS
Sbjct: 252 NSDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYS 311
Query: 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346
SS+G +RL+D+RQSALCD+ ++I + E+ GS+SFFTEIIASISDIKF+ DG+++LSRD
Sbjct: 312 SSKGSIRLIDLRQSALCDNHSKIFEEH-EAPGSRSFFTEIIASISDIKFSRDGRYILSRD 370
Query: 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406
YM LKLWD+ MDS PV+TF++HEHLRPKLCDLY NDSIFDKFEC +SGDGLH ATGSY N
Sbjct: 371 YMTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGN 430
Query: 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHH 466
L R+F GS T+EA +N R+ I+ P +L++L RG+ R+ EN +
Sbjct: 431 LFRVFGCTPGSTEATTLEASRNPMRRQIVN--PTRPTRTLTSLARGV-RRGGENQGVDAN 487
Query: 467 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501
S++ S+KLLHLAWHPT N IACA NSL+ +YA
Sbjct: 488 GNSFDFSTKLLHLAWHPTENSIACAAANSLYMYYA 522
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 287/513 (55%), Positives = 371/513 (72%), Gaps = 30/513 (5%)
Query: 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
+ S LEW+ SQ FGER+ EE+Q+VDI+SAIEFD +G++LA GDRGGRV+LFE +
Sbjct: 13 DPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERT---D 69
Query: 67 TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
T N +R ELE + D+ HPE+RYKTEFQSH+PEFDYLKSLEIEEKIN++RWC N
Sbjct: 70 TNNSSGTRRELE-EADYP-LRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTAN 127
Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF------------M 174
G++F+LSTNDKTIK WKV+D+K+KKI +M+ P + N +A + +
Sbjct: 128 GALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGV 187
Query: 175 NEHNPPSFAHGYHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
+E N S + + L + + + + +S ARC++VY HAHD++INSISNNSD
Sbjct: 188 SEVNN-SLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINSISNNSDG 246
Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
ETF+SADDLRINLWNLEIS+Q FNIVD+KP+ M+DL+EVITSAEFHP +CN+LAYSSS+G
Sbjct: 247 ETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKG 306
Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
+RL+D+RQSALCD +++ + E G KSFFTEIIAS+SDIKFA +G++LLSRDYM L
Sbjct: 307 SIRLIDLRQSALCDSHSKLFEEP-EQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTL 365
Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
KLWDI MD+ PVATF++HE+L+PKLCDLY NDSIFDKFEC +SG+GL ATGSYSNL R+
Sbjct: 366 KLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNLFRV 425
Query: 411 FSHGVGSAGGITVEAGKNENRK--PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHEL 468
F GS T+EA +N R+ PI RA LS++TR + R + G+
Sbjct: 426 FGVAPGSTETATLEASRNPMRRHVPIPSRPSRA----LSSITRVVSRGSESPGVDGNTN- 480
Query: 469 SYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501
+ + ++KLLHLAWHP N IACA NSL+ +YA
Sbjct: 481 ALDYTTKLLHLAWHPNENSIACAAANSLYMYYA 513
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/498 (46%), Positives = 318/498 (63%), Gaps = 62/498 (12%)
Query: 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
+WK +Q FG++ E++ + DI+SA+EFD TGDYLA GD+GGRV+LFE
Sbjct: 10 QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFE------------ 57
Query: 73 SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
R+ +K EY++ TEFQSHEPEFDYLKSLEIEEKIN++RWC N + F+L
Sbjct: 58 -RNHSKKGC--------EYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLL 108
Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192
STNDKTIKLWK+ ++ +K ++AE N + + P G ++
Sbjct: 109 STNDKTIKLWKLYEKNLK----------------VVAENNLSDSFHSP--MQGPLTTPSQ 150
Query: 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252
++ + + A ++VY +AH ++INSIS NSD ET++SADDLRINLWNL ISD
Sbjct: 151 LRLPRLNHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISDHS 210
Query: 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312
FNIVD+KP NM++LTEVITSAEFHPI CN L YSSS+G ++L+D+RQSALCD+ ++ D
Sbjct: 211 FNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLFED 270
Query: 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR 372
E SKSFF+EII+SISD+KF+ +G+++LSRDY+ LK+WD+ M+ PV T +H+ LR
Sbjct: 271 -QEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDVLR 329
Query: 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKNE 429
KLCDLY ND IFDKFEC+ SGD H +GSYSN I+ S G G I ++A K
Sbjct: 330 SKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRGQIVLQADK-- 387
Query: 430 NRKPILQAAPRARRSSLSNLT----------RGLYRQAHENSSSGHHELSYNLSSKLLHL 479
AA RAR+S+ +N+ R + A ++S G + + + K+LH
Sbjct: 388 -------AAFRARKSAANNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDNLDYNKKILHA 440
Query: 480 AWHPTTNLIACANGNSLF 497
+WHP + +A A N+LF
Sbjct: 441 SWHPFEDSVAIAATNNLF 458
|
Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/496 (43%), Positives = 303/496 (61%), Gaps = 73/496 (14%)
Query: 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
+W SQ G DE++ + DI+S +EF+ +GD LA GD+GGRV++F+
Sbjct: 10 FQWCFSQVKGA--IDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQR---------- 57
Query: 72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
E++ S EY + FQSHEPEFDYLKSLEIEEKIN++RW N + F+
Sbjct: 58 ------EQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFL 111
Query: 132 LSTNDKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182
LSTNDKTIKLWK+ RD++V+ + D F S +L + M E +P
Sbjct: 112 LSTNDKTIKLWKISERDKRVEGYNLKDDDGRLRDPFRITSLRVPILKPMDLMVEASP--- 168
Query: 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRIN 242
++++ +AH ++INSIS NSD ET++SADDLRIN
Sbjct: 169 ---------------------------RRIFANAHTYHINSISVNSDHETYLSADDLRIN 201
Query: 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302
LW+LEI+D+ FNIVD+KP+NM++LTEVIT+AEFHP +CN+ YSSS+G +RL DMR SAL
Sbjct: 202 LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSAL 261
Query: 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 362
CD ++ + E S+SFF+EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV
Sbjct: 262 CDRHSKFFEE-PEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPV 320
Query: 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422
T+++HE+LR KLC LY ND IFDKFEC +G TGSY+N R+F + IT
Sbjct: 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDR--NTRRDIT 378
Query: 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH 482
+EA + E+ KP PR + G R+ E + S + + K+LH AWH
Sbjct: 379 LEASR-ESSKPRAILKPR-------KVCTGGKRKKDEINVD-----SLDFNKKILHTAWH 425
Query: 483 PTTNLIACANGNSLFF 498
PT N+IA A N+L+
Sbjct: 426 PTDNIIAVAATNNLYI 441
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Xenopus tropicalis (taxid: 8364) |
| >sp|P63150|2ABA_RABIT Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryctolagus cuniculus GN=PPP2R2A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/487 (43%), Positives = 301/487 (61%), Gaps = 55/487 (11%)
Query: 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
++W SQ G D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+
Sbjct: 10 IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
E++ S S EY + FQSHEPEFDYLKSLEIEEKIN++RW N + F+
Sbjct: 58 ------EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
LSTNDKTIKLW KI E D P E L E++ + P+ +
Sbjct: 112 LSTNDKTIKLW--------KISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVF 157
Query: 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251
M V A ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+
Sbjct: 158 RPMDLM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311
FNIVD+KP+NM++LTEVIT+AEFHP CN YSSS+G +RL DMR SALCD +++
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 371
+ E ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+L
Sbjct: 271 E-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYL 329
Query: 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431
R KLC LY ND IFDKFEC +G TGSY+N R+F + IT+EA + EN
Sbjct: 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENN 386
Query: 432 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 491
KP PR +S R+ E S S + + K+LH AWHP N+IA A
Sbjct: 387 KPRTVLKPRKVCASGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVA 434
Query: 492 NGNSLFF 498
N+L+
Sbjct: 435 TTNNLYI 441
|
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q6P1F6|2ABA_MOUSE Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Mus musculus GN=Ppp2r2a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/487 (43%), Positives = 301/487 (61%), Gaps = 55/487 (11%)
Query: 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
++W SQ G D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+
Sbjct: 10 IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
E++ S S EY + FQSHEPEFDYLKSLEIEEKIN++RW N + F+
Sbjct: 58 ------EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
LSTNDKTIKLW KI E D P E L E++ + P+ +
Sbjct: 112 LSTNDKTIKLW--------KISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVF 157
Query: 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251
M V A ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+
Sbjct: 158 RPMDLM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311
FNIVD+KP+NM++LTEVIT+AEFHP CN YSSS+G +RL DMR SALCD +++
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 371
+ E ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+L
Sbjct: 271 E-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYL 329
Query: 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431
R KLC LY ND IFDKFEC +G TGSY+N R+F + IT+EA + EN
Sbjct: 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENN 386
Query: 432 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 491
KP PR +S R+ E S S + + K+LH AWHP N+IA A
Sbjct: 387 KPRTVLKPRKVCASGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVA 434
Query: 492 NGNSLFF 498
N+L+
Sbjct: 435 TTNNLYI 441
|
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. Mus musculus (taxid: 10090) |
| >sp|Q4R7Z4|2ABA_MACFA Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Macaca fascicularis GN=PPP2R2A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/487 (43%), Positives = 301/487 (61%), Gaps = 55/487 (11%)
Query: 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
++W SQ G D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+
Sbjct: 10 IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
E++ S S EY + FQSHEPEFDYLKSLEIEEKIN++RW N + F+
Sbjct: 58 ------EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
LSTNDKTIKLW KI E D P E L E++ + P+ +
Sbjct: 112 LSTNDKTIKLW--------KISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVF 157
Query: 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251
M V A ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+
Sbjct: 158 RPMDLM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311
FNIVD+KP+NM++LTEVIT+AEFHP CN YSSS+G +RL DMR SALCD +++
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 371
+ E ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+L
Sbjct: 271 E-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYL 329
Query: 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431
R KLC LY ND IFDKFEC +G TGSY+N R+F + IT+EA + EN
Sbjct: 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENN 386
Query: 432 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 491
KP PR +S R+ E S S + + K+LH AWHP N+IA A
Sbjct: 387 KPRTVLKPRKVCASGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVA 434
Query: 492 NGNSLFF 498
N+L+
Sbjct: 435 TTNNLYI 441
|
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. Macaca fascicularis (taxid: 9541) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | ||||||
| 359491379 | 507 | PREDICTED: serine/threonine protein phos | 0.984 | 0.972 | 0.740 | 0.0 | |
| 297733754 | 503 | unnamed protein product [Vitis vinifera] | 0.976 | 0.972 | 0.738 | 0.0 | |
| 224133594 | 520 | predicted protein [Populus trichocarpa] | 0.980 | 0.944 | 0.706 | 0.0 | |
| 255540613 | 506 | protein phosphatase pp2a regulatory subu | 0.970 | 0.960 | 0.742 | 0.0 | |
| 449440662 | 514 | PREDICTED: serine/threonine protein phos | 0.996 | 0.970 | 0.656 | 0.0 | |
| 356508685 | 506 | PREDICTED: serine/threonine protein phos | 0.988 | 0.978 | 0.623 | 0.0 | |
| 11094369 | 515 | Ser/Thr specific protein phosphatase 2A | 0.986 | 0.959 | 0.581 | 1e-165 | |
| 224088860 | 521 | predicted protein [Populus trichocarpa] | 0.960 | 0.923 | 0.584 | 1e-165 | |
| 30685484 | 500 | Protein phosphatase 2A, regulatory subun | 0.948 | 0.95 | 0.589 | 1e-165 | |
| 18394522 | 501 | Protein phosphatase 2A, regulatory subun | 0.958 | 0.958 | 0.592 | 1e-165 |
| >gi|359491379|ref|XP_002278753.2| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/504 (74%), Positives = 438/504 (86%), Gaps = 11/504 (2%)
Query: 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE K+
Sbjct: 6 DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFERKDEKD 65
Query: 67 TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
+ NQ SR+ELE Q+DFT+ HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 66 SLNQWHSRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 124
Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
S+FILSTNDKTIKLWKV+D K KK+KE++ PFV SEN LLAE +F++ + PS A+GY
Sbjct: 125 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 184
Query: 187 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 237
LEWTE NM+ K+AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 185 ALEWTEKIDNMSPSQDTHAKVANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 244
Query: 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297
DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 245 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 304
Query: 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357
RQSA+CDH+ARIL+ ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 305 RQSAICDHNARILQHG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 363
Query: 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417
+++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS
Sbjct: 364 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGS 423
Query: 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL 477
GIT+EA +N NRK LQAAP+ARRSS+SNLTRG RQA+EN SSG +ELS NLSSKLL
Sbjct: 424 EEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLL 483
Query: 478 HLAWHPTTNLIACANGNSLFFHYA 501
HLAWHPTT IACA GNSL+ +YA
Sbjct: 484 HLAWHPTTKFIACAAGNSLYMYYA 507
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297733754|emb|CBI15001.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/504 (73%), Positives = 436/504 (86%), Gaps = 15/504 (2%)
Query: 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE K+
Sbjct: 6 DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFER---KD 62
Query: 67 TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
+ H SR+ELE Q+DFT+ HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 63 EKDWH-SRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 120
Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
S+FILSTNDKTIKLWKV+D K KK+KE++ PFV SEN LLAE +F++ + PS A+GY
Sbjct: 121 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 180
Query: 187 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 237
LEWTE NM+ K AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 181 ALEWTEKIDNMSPSQDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 240
Query: 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297
DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 241 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 300
Query: 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357
RQSA+CDH+ARIL+ ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 301 RQSAICDHNARILQHG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 359
Query: 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417
+++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS
Sbjct: 360 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGS 419
Query: 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL 477
GIT+EA +N NRK LQAAP+ARRSS+SNLTRG RQA+EN SSG +ELS NLSSKLL
Sbjct: 420 EEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLL 479
Query: 478 HLAWHPTTNLIACANGNSLFFHYA 501
HLAWHPTT IACA GNSL+ +YA
Sbjct: 480 HLAWHPTTKFIACAAGNSLYMYYA 503
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133594|ref|XP_002321613.1| predicted protein [Populus trichocarpa] gi|222868609|gb|EEF05740.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/507 (70%), Positives = 419/507 (82%), Gaps = 16/507 (3%)
Query: 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP 68
S L+WK SQ FGE P E+LQDVD+VS+I F+K+GDYLAVGDRGGRV++F+ GK+TP
Sbjct: 16 SPPLDWKFSQVFGETTPGEDLQDVDVVSSIGFEKSGDYLAVGDRGGRVVIFQAKHGKHTP 75
Query: 69 NQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128
N ++R+ELE+ +D T+HPEY+YKTEFQSHEPEFDYLKS+EIEEKINRV+WC+ NGS
Sbjct: 76 NSFLNRNELER-LDCAFTTHPEYQYKTEFQSHEPEFDYLKSMEIEEKINRVKWCSTSNGS 134
Query: 129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188
+FILSTNDKTIKLWKV ++K+KK++EM+H V SEN LL E +FM+E + P +GY+L
Sbjct: 135 LFILSTNDKTIKLWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFMSELDKPPTTNGYNL 194
Query: 189 EWTENMA----------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
+W E +A TKI + + A C+KVY HAHDFNINSISNNSD ETF+S+DD
Sbjct: 195 DWAEKIAKDTLSSQEVQTKITHTEEATRANCRKVYAHAHDFNINSISNNSDGETFISSDD 254
Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
LRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT AEFHPI+CNLLAYSSSRGF RLVDMR
Sbjct: 255 LRINLWNLEISDQCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLAYSSSRGFTRLVDMR 314
Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 358
QSA+CDHSARIL+DA E GSKSFFTE+IASISD+KF DGQH+L+RDYMNLKLWD+RMD
Sbjct: 315 QSAICDHSARILQDA-ECRGSKSFFTELIASISDMKFTYDGQHILTRDYMNLKLWDMRMD 373
Query: 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418
S+PVA FKIHEHLRPKL DLYN+DSIFDKFEC +SGDGLHFATGSYSN LRIFSHGVG+
Sbjct: 374 SSPVAVFKIHEHLRPKLSDLYNDDSIFDKFECCISGDGLHFATGSYSNNLRIFSHGVGNE 433
Query: 419 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ----AHENSSSGHHELSYNLSS 474
GIT+EA KN NR+ IL + R RRSSLSN+ RG YRQ HEN SG +E S NLSS
Sbjct: 434 EGITIEASKNPNRRSILHSTSRPRRSSLSNMARGFYRQVDYVGHENYRSGSNEFSCNLSS 493
Query: 475 KLLHLAWHPTTNLIACANGNSLFFHYA 501
KLLHLAWHPTTN IACA+GNSL ++A
Sbjct: 494 KLLHLAWHPTTNFIACASGNSLLMYHA 520
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540613|ref|XP_002511371.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gi|223550486|gb|EEF51973.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/497 (74%), Positives = 421/497 (84%), Gaps = 11/497 (2%)
Query: 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
LEWK SQ FGER P E++QD D+VSAIEFDK+GDYLAVGDRGGRV++FE K+TPNQ+
Sbjct: 14 LEWKFSQVFGERIPGEDVQDADVVSAIEFDKSGDYLAVGDRGGRVVIFERKDRKDTPNQY 73
Query: 72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
SR+ELE +DFT T HP Y+YKTEFQSHEPEFDYLKSLEIEEKINR++WCA PNGS+FI
Sbjct: 74 NSRNELE-TLDFTFTGHPIYQYKTEFQSHEPEFDYLKSLEIEEKINRIKWCATPNGSLFI 132
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
LSTNDKTIKLWKV++ K KK+KE+D V SE+ LLAE++F+ E PS +GYHL WT
Sbjct: 133 LSTNDKTIKLWKVKECKAKKVKEIDPTSIVCSESALLAERSFIREQGKPS--NGYHLGWT 190
Query: 192 ENMA-------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLW 244
EN + TK A ++ A C+KVY HAHDFNINSISNNSD ETF+SADDLRINLW
Sbjct: 191 ENNSSPFQEGHTKFACAEDTTRASCRKVYAHAHDFNINSISNNSDGETFISADDLRINLW 250
Query: 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304
NLEISDQCFNI+DMKPSNM+DLTEVITSAEFHP+YCN+LAYSSSRGF+ LVDMRQSALCD
Sbjct: 251 NLEISDQCFNIIDMKPSNMEDLTEVITSAEFHPLYCNMLAYSSSRGFIHLVDMRQSALCD 310
Query: 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 364
SARIL+DA E GSKSFFTEIIASISD+KF NDG H+LSRDYMNLKLWDIRMD P++
Sbjct: 311 QSARILQDA-ECRGSKSFFTEIIASISDVKFTNDGHHILSRDYMNLKLWDIRMDPLPISI 369
Query: 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424
FKIHEHLRPKL DLYNNDSIFDKFEC +SGDGLHFATGSYSNLLRIFS+GVGS GITVE
Sbjct: 370 FKIHEHLRPKLSDLYNNDSIFDKFECCISGDGLHFATGSYSNLLRIFSYGVGSENGITVE 429
Query: 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT 484
A KN NRK + ++ RARRSSLSNLTRG Y +ENSSSG +E S +L+SKLLHLAWHPT
Sbjct: 430 ASKNPNRKSLPRSTSRARRSSLSNLTRGFYWHGNENSSSGGNEFSCDLTSKLLHLAWHPT 489
Query: 485 TNLIACANGNSLFFHYA 501
TN+IAC++GNSL+ +YA
Sbjct: 490 TNMIACSSGNSLYMYYA 506
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440662|ref|XP_004138103.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/516 (65%), Positives = 406/516 (78%), Gaps = 17/516 (3%)
Query: 1 MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
M + + A +WK SQ FGER E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1 MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60
Query: 61 TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
GK+T + +RS+LE Q++ T HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61 RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119
Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+ FVS EN LLAE +F +E +
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179
Query: 181 SFAHGYHLEWTENMATK----------IANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
S ++G H +ENM IA+ N+ RC+KVY HAHD+NINSISNNSD
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239
Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299
Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
F+RLVDMRQSALCDHSA +LR E + KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358
Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
KLWDI S+PVA FKIHEHLRP+LC+LY+NDSIFD+FEC +S DGLHFATGSYSN LR+
Sbjct: 359 KLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNHLRM 418
Query: 411 FSHGVGSAGGITVEAGKNENRKPILQ-----AAPRARRSSLSNLTRGLYRQAHENSSSGH 465
FS+G GS+ GIT E GK +R+P LQ RARRSSLSNLTR +R E+SSS
Sbjct: 419 FSYGSGSSEGITTEVGKFPDRRPHLQITRQATTRRARRSSLSNLTRDFFRHGSEHSSSDG 478
Query: 466 HELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501
E S +L+SKLLHLAWHP+ NLIACA G+ LF +YA
Sbjct: 479 SETSVDLNSKLLHLAWHPSENLIACAAGSGLFVYYA 514
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508685|ref|XP_003523085.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/512 (62%), Positives = 393/512 (76%), Gaps = 17/512 (3%)
Query: 1 MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
M N + +SA L WK SQ G+R P+E LQ+ DI++A+ F+K GDYLAVGDRGGRV++FE
Sbjct: 1 MTTNSDSSSAPLHWKFSQVLGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVVIFE 60
Query: 61 TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
K + R ELE Q DF ++ HPE+R+KTEFQSHEPEFDYLKS+EIEEKIN+VR
Sbjct: 61 RDDRKKNVSIANDRRELE-QRDFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVR 119
Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
W + + FILSTNDKTIKLWKV++ KVK++KEM P + SEN LLAE++F+
Sbjct: 120 WWMSNDSLQFILSTNDKTIKLWKVKEHKVKQVKEMA--PPLCSENMLLAERSFVP--GLE 175
Query: 181 SFAHGYHLEWTE----------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
+ A+GYHLEW E ++ +I + + + A+CQKVY +AH FNINSISNNSD
Sbjct: 176 TTANGYHLEWIEKTPKNHLLPQDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDY 235
Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
ETF+SADDLRINLWNLE+SDQCFNI+DMKPSNM+DLTEVIT+AEFHP++CNLLAYSSS+G
Sbjct: 236 ETFISADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQG 295
Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
F+RL D+RQ+A+CDH++R+ + ES GSKSFFTEI +SISDIKF NDGQHL+SR+YMN+
Sbjct: 296 FIRLSDLRQAAICDHASRMFQHG-ESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNM 354
Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
KLWD+RM+S+PVA FKIHEHLRPKL +LYNND IFDKFEC SGDGLHFATGSYSN++RI
Sbjct: 355 KLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNVVRI 414
Query: 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQAHENSSSGHHELS 469
FS G I +E N +RK I QA R RR SLSNL R +Y+ AH +S S + S
Sbjct: 415 FSPGSERKEEIKLEIRGNSHRKVIHQAKSRVRRPSLSNLIPREIYQHAHTDSESSRADFS 474
Query: 470 YNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501
NLSSKLLH+AWHPT NL+ CA +SL +YA
Sbjct: 475 CNLSSKLLHVAWHPTCNLVVCAAESSLVLYYA 506
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|11094369|gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 300/516 (58%), Positives = 382/516 (74%), Gaps = 22/516 (4%)
Query: 1 MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
+++ EE LEWK SQ FGER EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE
Sbjct: 7 VVVAPEEPVQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 66
Query: 61 TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
K+ QH SRS+LE+ MD++ HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 67 RTDSKD---QHGSRSDLER-MDYSVNRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIK 122
Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP- 179
WC NG++F+LSTNDKTIK WKV+++KVKKI +M+ + N +A + + P
Sbjct: 123 WCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDSSKAMGNGSIASSSNSSSSKPH 182
Query: 180 -----PS------FAHGYHLEWTENMATKIANV---GNSVHARCQKVYPHAHDFNINSIS 225
PS ++ + + K+ +V S+ ARC++VY HAHD++INSIS
Sbjct: 183 LANGGPSDKSYSYLSNDFSFPPGGLPSLKLPSVVSHETSLLARCRRVYAHAHDYHINSIS 242
Query: 226 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285
NNSD ETF+SADDLRINLWNLEIS Q FNIVD+KP+NM+DLTEVITSAEFHP +CN LAY
Sbjct: 243 NNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAY 302
Query: 286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345
SSS+G +RLVD+RQSALCD A++ + E+ GS+SFFTEIIASISDIKFA DG+++LSR
Sbjct: 303 SSSKGSIRLVDLRQSALCDSHAKLFEEQ-EAPGSRSFFTEIIASISDIKFAKDGRYILSR 361
Query: 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405
DYM LKLWDI MDS PVAT+++HEHLRP+LCDLY NDSIFDKFEC +SGDG +TGSYS
Sbjct: 362 DYMTLKLWDINMDSGPVATYRVHEHLRPRLCDLYENDSIFDKFECCLSGDGSRVSTGSYS 421
Query: 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGH 465
NL R+F GS T+EA KN R+ + + R RS +++TR + R+ EN+S
Sbjct: 422 NLFRVFGCAPGSTEATTLEASKNPMRRQVPTPS-RPSRSIGNSITR-VVRRGAENTSVDA 479
Query: 466 HELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501
+ S++ ++KLLHLAWHP+ N IACA NSL+ +YA
Sbjct: 480 NGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 515
|
Source: Medicago sativa subsp. x varia Species: Medicago sativa Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/505 (58%), Positives = 378/505 (74%), Gaps = 24/505 (4%)
Query: 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
LEWK +Q FGER EE+Q+VDI+SAIEFD+TGD+LA GDRGGRV+LFE +T +
Sbjct: 26 LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERT---DTRDHG 82
Query: 72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
+R +LE+ MDF HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC + NG++F+
Sbjct: 83 GNRRDLER-MDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFL 141
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
LSTNDKTIK WKV+++KVKKI +M+ P ++ N L + ++ + P A+G L+
Sbjct: 142 LSTNDKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPS-ISTSSKPYTANGGCLDKP 200
Query: 192 ENMATK---------------IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA 236
++ + ++ S+ RC+++Y HAHD++INSISNNSD ETF+SA
Sbjct: 201 LGLSNDFSFPPGGVSSLHLPVLTSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISA 260
Query: 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296
DDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN+LAYSSSRG +RLVD
Sbjct: 261 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVD 320
Query: 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356
MRQSALCD +++ + E GS+SFFTEIIASISDIKFA DG+++LSRDYM LKLWDI
Sbjct: 321 MRQSALCDSHSKLFEE-QEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDIN 379
Query: 357 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416
MDS PV+TF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL ATGSYSNL R+F G
Sbjct: 380 MDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDG 439
Query: 417 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKL 476
S T+EA KN R+ + Q R R SL L+RG +R+ + S + + +++ ++KL
Sbjct: 440 STEATTLEASKNPMRRQV-QTPSRPSR-SLGTLSRG-FRRGADTSGADTNGNAFDFTTKL 496
Query: 477 LHLAWHPTTNLIACANGNSLFFHYA 501
LHLAWHPT N +ACA NSL+ +YA
Sbjct: 497 LHLAWHPTENSLACAASNSLYMYYA 521
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685484|ref|NP_849681.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] gi|9802743|gb|AAF99812.1|AC034257_4 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|13877637|gb|AAK43896.1|AF370519_1 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|332191506|gb|AEE29627.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 296/502 (58%), Positives = 376/502 (74%), Gaps = 27/502 (5%)
Query: 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
SLEW+ SQ FGER EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE +T +
Sbjct: 15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71
Query: 71 HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
SR +LE Q D+ HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC NG++F
Sbjct: 72 GGSRKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129
Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEK--NFMNE--HNP 179
+LSTNDKTIK WKV+++K+KKI EM+ P SS N L A+K +++++ P
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189
Query: 180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDL 239
P L + T + ARC++VY HAHD++INSISN+SD ETF+SADDL
Sbjct: 190 PGGIPSLRLPVVTSQETNLV-------ARCRRVYAHAHDYHINSISNSSDGETFISADDL 242
Query: 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299
R+NLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQ
Sbjct: 243 RVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQ 302
Query: 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 359
SALCD ++ + E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS
Sbjct: 303 SALCDSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDS 361
Query: 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419
PVA++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL ATGSYSNL R+F GS
Sbjct: 362 GPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTE 421
Query: 420 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL 479
T+EA KN R+ I A +R S+ ++TR + R+ E+ + + +Y+ ++KLLH+
Sbjct: 422 AATLEASKNPMRRQIQTPARPSR--SIGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHM 478
Query: 480 AWHPTTNLIACANGNSLFFHYA 501
AWHPT N IACA NSL+ +YA
Sbjct: 479 AWHPTENSIACAAANSLYMYYA 500
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394522|ref|NP_564033.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] gi|75319459|sp|Q39247.1|2ABB_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform; Short=AtB beta; Short=PP2A, subunit B, beta isoform gi|1408460|gb|AAB60777.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit [Arabidopsis thaliana] gi|15010728|gb|AAK74023.1| At1g17720/F11A6_14 [Arabidopsis thaliana] gi|23308483|gb|AAN18211.1| At1g17720/F11A6_14 [Arabidopsis thaliana] gi|110741434|dbj|BAE98679.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|332191505|gb|AEE29626.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/498 (59%), Positives = 373/498 (74%), Gaps = 18/498 (3%)
Query: 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
SLEW+ SQ FGER EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE +T +
Sbjct: 15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71
Query: 71 HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
SR +LE Q D+ HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC NG++F
Sbjct: 72 GGSRKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129
Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
+LSTNDKTIK WKV+++K+KKI EM+ P SS N L A+K SF
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189
Query: 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINL 243
G + + + ++ ARC++VY HAHD++INSISN+SD ETF+SADDLR+NL
Sbjct: 190 PGGIPSL--RLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247
Query: 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct: 248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307
Query: 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363
D ++ + E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA
Sbjct: 308 DSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVA 366
Query: 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423
++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL ATGSYSNL R+F GS T+
Sbjct: 367 SYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATL 426
Query: 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP 483
EA KN R+ I A +R S+ ++TR + R+ E+ + + +Y+ ++KLLH+AWHP
Sbjct: 427 EASKNPMRRQIQTPARPSR--SIGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHP 483
Query: 484 TTNLIACANGNSLFFHYA 501
T N IACA NSL+ +YA
Sbjct: 484 TENSIACAAANSLYMYYA 501
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | ||||||
| TAIR|locus:2007963 | 501 | ATB BETA [Arabidopsis thaliana | 0.958 | 0.958 | 0.580 | 1.6e-148 | |
| DICTYBASE|DDB_G0283905 | 483 | phr2aB "protein phosphatase 2A | 0.908 | 0.942 | 0.431 | 6.5e-106 | |
| CGD|CAL0004658 | 519 | orf19.1468 [Candida albicans ( | 0.427 | 0.412 | 0.525 | 8.2e-106 | |
| ASPGD|ASPL0000046009 | 472 | AN1545 [Emericella nidulans (t | 0.782 | 0.830 | 0.442 | 8.3e-104 | |
| UNIPROTKB|Q6DIY3 | 447 | ppp2r2d "Serine/threonine-prot | 0.552 | 0.619 | 0.477 | 2e-100 | |
| WB|WBGene00006352 | 495 | sur-6 [Caenorhabditis elegans | 0.568 | 0.575 | 0.491 | 1.1e-99 | |
| UNIPROTKB|Q7ZX64 | 447 | ppp2r2d "Serine/threonine-prot | 0.552 | 0.619 | 0.460 | 1.2e-98 | |
| UNIPROTKB|F1NNN2 | 450 | PPP2R2D "Serine/threonine-prot | 0.552 | 0.615 | 0.467 | 3.3e-98 | |
| UNIPROTKB|F1NS69 | 451 | PPP2R2D "Serine/threonine-prot | 0.552 | 0.614 | 0.467 | 3.3e-98 | |
| UNIPROTKB|Q5ZIY5 | 451 | PPP2R2D "Serine/threonine-prot | 0.552 | 0.614 | 0.467 | 3.3e-98 |
| TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
Identities = 289/498 (58%), Positives = 366/498 (73%)
Query: 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
SLEW+ SQ FGER EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE +T +
Sbjct: 15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71
Query: 71 HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
SR +LE Q D+ HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC NG++F
Sbjct: 72 GGSRKDLE-QTDYP-VRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129
Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
+LSTNDKTIK WKV+++K+KKI EM+ P SS N L A+K SF
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189
Query: 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 243
G + + + + + ++ ARC++VY HAHD+ D ETF+SADDLR+NL
Sbjct: 190 PG-GIP-SLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247
Query: 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct: 248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307
Query: 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363
D ++ + E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA
Sbjct: 308 DSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVA 366
Query: 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423
++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL ATGSYSNL R+F GS T+
Sbjct: 367 SYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATL 426
Query: 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP 483
EA KN R+ I Q R RS + ++TR + R+ E+ + + +Y+ ++KLLH+AWHP
Sbjct: 427 EASKNPMRRQI-QTPARPSRS-IGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHP 483
Query: 484 TTNLIACANGNSLFFHYA 501
T N IACA NSL+ +YA
Sbjct: 484 TENSIACAAANSLYMYYA 501
|
|
| DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 220/510 (43%), Positives = 314/510 (61%)
Query: 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
L+W+ SQ FG + +E+ D ++V AIEFD+TGD++AVGD+GG+V+L + K Q
Sbjct: 5 LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDK----QS 59
Query: 72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
+S+L PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC N + F+
Sbjct: 60 SKKSKL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFL 108
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
L+TNDKTIKLWKV ++K+K++ S +L + N +P + Y+
Sbjct: 109 LTTNDKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASN----NTRSPSHTTYIYNSSGA 164
Query: 192 ENMATKIANVGNS-----------------VHARCQKVYPHAHDFXXXXXXXXXDCETFV 234
NM + N N+ V A +K++ +AH + D ET++
Sbjct: 165 HNMNNNMNNSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYI 224
Query: 235 SADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294
S+DDLRI+LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP CN+ YSSS+G ++L
Sbjct: 225 SSDDLRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKL 284
Query: 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354
D+R SALCD+ A++ + E +KSFF+EII+SISDIKF+ DG+++LSRD++ LKLWD
Sbjct: 285 GDLRSSALCDNHAKVFEEY-EDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWD 343
Query: 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414
I M++ PV T +IH++L+PKLCDLY ND IFDKFEC+++ DG TGSY N L I+
Sbjct: 344 INMENKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIYD-- 401
Query: 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-YRQAHENSSSGH--HELSYN 471
+N + L+A+ +A +S LT + R + + H +
Sbjct: 402 ------------RNSKQDVCLEASKQATKSKTKTLTTKMKLRSSKKEPKKPEDIHPDAIE 449
Query: 472 LSSKLLHLAWHPTTNLIACANGNSLFFHYA 501
+ K LH AWHP NLIA N+++ + A
Sbjct: 450 YTKKTLHCAWHPKDNLIAVGAANTVYLYAA 479
|
|
| CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 8.2e-106, Sum P(4) = 8.2e-106
Identities = 113/215 (52%), Positives = 154/215 (71%)
Query: 205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
+ A+ +K+Y +AH + D ET++SADDLRINLWNL I+DQ FNIVD+KP+NM+
Sbjct: 159 ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNIVDIKPANME 218
Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
+LTEVITSAEFHP CNL YSSS+G ++L DMR ++LCD A+I + + S +FFT
Sbjct: 219 ELTEVITSAEFHPSQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLDP-SSHNFFT 277
Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
EI +SISD+KF++DG+++ SRDYM +K+WD+ M++ P+ T +HEHLR +LCD Y ND+I
Sbjct: 278 EITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPLKTIDVHEHLRERLCDTYENDAI 337
Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419
FDKFE GD TGSY+N I+ + V G
Sbjct: 338 FDKFEVQFGGDNKSVMTGSYNNQFVIYPNAVNKGG 372
|
|
| ASPGD|ASPL0000046009 AN1545 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 185/418 (44%), Positives = 267/418 (63%)
Query: 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 149
EY++ TEFQSHEPEFDYLKSLEIEEKIN+++WC N S F+LSTNDKTIKLWKV D+ +
Sbjct: 66 EYKFHTEFQSHEPEFDYLKSLEIEEKINKIKWCRRQNASHFLLSTNDKTIKLWKVFDKSL 125
Query: 150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS---VH 206
K + E + +S+E T + P + + ++ A K+ + + V
Sbjct: 126 KVVAENN----LSTELT----PGGVGGGGAP---RAPRVSFKDSSALKLPRMTHHDTVVA 174
Query: 207 ARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266
A ++ Y +AH + D ETF+S+DDLR+NLWNL I DQ FNIVD+KP+NM++L
Sbjct: 175 AVPRRTYANAHAYHINSISVNSDGETFISSDDLRVNLWNLNIQDQSFNIVDIKPANMEEL 234
Query: 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326
TEVIT+AEFHP CN Y+SS+G ++L DMRQ ALCD ++ + E S+SFF+EI
Sbjct: 235 TEVITAAEFHPTSCNWFMYASSKGTIKLADMRQRALCDTHHKLF-EQEEDASSRSFFSEI 293
Query: 327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 386
I+SISD++F++DG++++SRDY+ +K+WD+ M+ PV T IHEHLRP+LCD Y NDSIFD
Sbjct: 294 ISSISDVRFSHDGRYIVSRDYLTVKIWDVNMERQPVKTIPIHEHLRPRLCDTYENDSIFD 353
Query: 387 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN--ENRK-----PILQAAP 439
KFE SGD + TGSY+N I+ I ++A K+ + +K P+ + A
Sbjct: 354 KFEVVFSGDAENVMTGSYNNNFMIYPTDPAKETEIVLQADKSAFKAKKVGVPTPMNKGAN 413
Query: 440 RARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497
+ +S ++ G + + + + ++ +N K+LH++WHP + IA A N+LF
Sbjct: 414 GKKSNSRTSSPAGPGSRMKKETDAD--QIDFN--KKILHMSWHPFEDSIAIAATNNLF 467
|
|
| UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
Identities = 140/293 (47%), Positives = 197/293 (67%)
Query: 205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
V A ++++ +AH + D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 164 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223
Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
+LTEVIT+AEFHP +CN+ YSSS+G +RL DMR SALCD ++ + E S+SFF+
Sbjct: 224 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEEP-EDPSSRSFFS 282
Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND I
Sbjct: 283 EIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCI 342
Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444
FDKFEC +G TGSY+N R+F + IT+EA + E+ KP PR
Sbjct: 343 FDKFECCWNGSDSAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 395
Query: 445 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497
T G ++ N S L +N K+LH AWHPT N+IA A N+L+
Sbjct: 396 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPTDNIIAVAATNNLY 440
|
|
| WB|WBGene00006352 sur-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 145/295 (49%), Positives = 196/295 (66%)
Query: 205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
V A ++VY +AH + D ETF+SADDLR+NLWNLEI+++ FNIVD+KP+NM+
Sbjct: 204 VEASPRRVYGNAHTYHVNSISVNSDQETFLSADDLRVNLWNLEITNESFNIVDIKPANME 263
Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
+LTEVIT+AEFHP CN YSSS+G +RL DMR ALCD A+I + E S+SFF+
Sbjct: 264 ELTEVITAAEFHPTQCNWFVYSSSKGSIRLCDMRDRALCDAYAKIFEEP-EDPQSRSFFS 322
Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
EIIAS+SD+KF+++G++LL+RDY+ +K+WD+ M+S PV T+ +H +LR KLC LY NDSI
Sbjct: 323 EIIASVSDVKFSHNGRYLLTRDYLTVKVWDLNMESQPVETYPVHNYLRTKLCALYENDSI 382
Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ--AAPRAR 442
FDKFEC SGD H TGSY NL R ++ G + T EA E + P A+
Sbjct: 383 FDKFECDWSGDDKHILTGSYHNLFRSYARG-NNQDAKTWEARPQEPHSQLRSRFVVPSAK 441
Query: 443 RSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497
R +NL+ E+ SS +L ++ K+LH AWHP N+IA A N+L+
Sbjct: 442 RKR-NNLSSS-GETTEEDLSSD--QLQFD--RKILHTAWHPKDNIIALAATNNLY 490
|
|
| UNIPROTKB|Q7ZX64 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 135/293 (46%), Positives = 197/293 (67%)
Query: 205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
V A ++++ +AH + D +T++SADDLR+NLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 164 VEASPRRIFANAHTYHINSISVNSDHQTYLSADDLRVNLWHLEITDRSFNIVDIKPANME 223
Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
+LTEVIT+AEFHP +C++ YSSS+G +RL DMR +ALCD ++ + E S+SFF+
Sbjct: 224 ELTEVITAAEFHPHHCHMFVYSSSKGTIRLCDMRDAALCDRHSKFFEEP-EDPSSRSFFS 282
Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
EII+SISD+KF++ G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND I
Sbjct: 283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCI 342
Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444
FDKFEC +G TGSY+N R+F + IT+EA + E+ KP PR
Sbjct: 343 FDKFECCWNGSDSSIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRATLKPR---- 395
Query: 445 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497
T G ++ N S L +N K+LH AWHPT N+IA A N+L+
Sbjct: 396 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPTDNIIAVAATNNLY 440
|
|
| UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 137/293 (46%), Positives = 196/293 (66%)
Query: 205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
V A ++++ +AH + D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 167 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 226
Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
+LTEVIT+AEFHP +CN+ YSSS+G +RL DMR SALCD ++ + E S+SFF+
Sbjct: 227 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 285
Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct: 286 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 345
Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444
FDKFEC +G TGSY+N R+F + IT+EA + E+ KP PR
Sbjct: 346 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 398
Query: 445 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497
T G ++ N S L +N K+LH AWHP N+IA A N+L+
Sbjct: 399 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPMENIIAVAATNNLY 443
|
|
| UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 137/293 (46%), Positives = 196/293 (66%)
Query: 205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
V A ++++ +AH + D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227
Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
+LTEVIT+AEFHP +CN+ YSSS+G +RL DMR SALCD ++ + E S+SFF+
Sbjct: 228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286
Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct: 287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346
Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444
FDKFEC +G TGSY+N R+F + IT+EA + E+ KP PR
Sbjct: 347 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 399
Query: 445 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497
T G ++ N S L +N K+LH AWHP N+IA A N+L+
Sbjct: 400 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPMENIIAVAATNNLY 444
|
|
| UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 137/293 (46%), Positives = 196/293 (66%)
Query: 205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
V A ++++ +AH + D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227
Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
+LTEVIT+AEFHP +CN+ YSSS+G +RL DMR SALCD ++ + E S+SFF+
Sbjct: 228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286
Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct: 287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346
Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444
FDKFEC +G TGSY+N R+F + IT+EA + E+ KP PR
Sbjct: 347 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 399
Query: 445 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497
T G ++ N S L +N K+LH AWHP N+IA A N+L+
Sbjct: 400 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPMENIIAVAATNNLY 444
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0E2P1 | 2ABB_ORYSJ | No assigned EC number | 0.5733 | 0.9441 | 0.9009 | yes | no |
| Q39247 | 2ABB_ARATH | No assigned EC number | 0.5923 | 0.9580 | 0.9580 | yes | no |
| Q54Q99 | PH2AB_DICDI | No assigned EC number | 0.4413 | 0.9221 | 0.9565 | yes | no |
| Q6DIY3 | 2ABD_XENTR | No assigned EC number | 0.4354 | 0.8443 | 0.9463 | yes | no |
| P36876 | 2ABA_RAT | No assigned EC number | 0.4394 | 0.8622 | 0.9664 | yes | no |
| P36872 | 2ABA_DROME | No assigned EC number | 0.4250 | 0.8542 | 0.8577 | yes | no |
| Q29090 | 2ABA_PIG | No assigned EC number | 0.4439 | 0.8383 | 0.9859 | yes | no |
| Q12702 | 2ABA_SCHPO | No assigned EC number | 0.4678 | 0.8702 | 0.9416 | yes | no |
| P63151 | 2ABA_HUMAN | No assigned EC number | 0.4394 | 0.8622 | 0.9664 | yes | no |
| P63150 | 2ABA_RABIT | No assigned EC number | 0.4394 | 0.8622 | 0.9664 | yes | no |
| Q6NY64 | 2ABD_DANRE | No assigned EC number | 0.4254 | 0.8443 | 0.9463 | yes | no |
| A2X2K3 | 2ABB_ORYSI | No assigned EC number | 0.5733 | 0.9441 | 0.9009 | N/A | no |
| Q6P1F6 | 2ABA_MOUSE | No assigned EC number | 0.4394 | 0.8622 | 0.9664 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00016042001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (503 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 501 | |||
| COG5170 | 460 | COG5170, CDC55, Serine/threonine protein phosphata | 1e-130 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-05 |
| >gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 385 bits (989), Expect = e-130
Identities = 203/490 (41%), Positives = 281/490 (57%), Gaps = 46/490 (9%)
Query: 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
K Q FG++ + D ++A+EFD+TG YLA GD+GGRV+LFE
Sbjct: 7 ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFE------------ 54
Query: 73 SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
R + EY++ TEFQSHE EFDYLKSLEIEEKIN + W + F+L
Sbjct: 55 -REKSY---------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104
Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192
STNDKTIKLWK+ ++ +K V +EN L + G E
Sbjct: 105 STNDKTIKLWKIYEKNLK----------VVAENNLSDSFHSPMG--------GPLTSTKE 146
Query: 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252
+ +++ + A+ +VY +AH ++INSIS NSD ET +SADDLRINLWNLEI D
Sbjct: 147 LLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGS 206
Query: 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312
FNIVD+KP NM++LTEVITSAEFHP CN+ YSSS+G ++L D+RQSALCD+S ++
Sbjct: 207 FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266
Query: 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR 372
FF EI++SISD KF+++G+++LSRDY+ +K+WD+ M P+ T +H L
Sbjct: 267 -TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM 325
Query: 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKN- 428
+L D+Y ND+IFDKFE S SGD H +GSYSN I+ S G G + A +
Sbjct: 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSA 385
Query: 429 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENS-SSGHHELSYNLSSKLLHLAWHPTTNL 487
E+ K + ++ L N + + + + +L K+LH +WHP +
Sbjct: 386 EDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNLDLLKKILHRSWHPFEDS 445
Query: 488 IACANGNSLF 497
+A A N+LF
Sbjct: 446 VAIAATNNLF 455
|
Length = 460 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 75/390 (19%), Positives = 134/390 (34%), Gaps = 120/390 (30%)
Query: 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
V+ + F G LA G G + +++ G
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---------------------------E 42
Query: 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152
+ H + V A +G+ ++DKTI+LW + + + +
Sbjct: 43 LLRTLKGHT------------GPVRDVAASA--DGTYLASGSSDKTIRLWDL--ETGECV 86
Query: 153 KEM-DHFPFVSS-----ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 206
+ + H +VSS + +L+ + + K+ +V
Sbjct: 87 RTLTGHTSYVSSVAFSPDGRILSSSSR-------------------DKTIKVWDVET--- 124
Query: 207 ARCQKVYPHAHDFNINSISNNSDCETFV--SADDLRINLWNLEISDQCFNIVDMKPSNMD 264
+C D+ +NS++ + D TFV S+ D I LW+L + +C +
Sbjct: 125 GKCLTTLRGHTDW-VNSVAFSPD-GTFVASSSQDGTIKLWDLR-TGKCVA-------TLT 174
Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
T + S F P LL+ SSS G ++L D+ + G+
Sbjct: 175 GHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLS--------------TGKCLGTLRGHE 219
Query: 325 EIIASISDIKFANDGQHLLS--RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 382
+ S++ F+ DG L S D +++WD+R V T H +
Sbjct: 220 NGVNSVA---FSPDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHTN------------ 262
Query: 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFS 412
S+ + S DG A+GS +RI+
Sbjct: 263 SVTS---LAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.98 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.98 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.98 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.98 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.93 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.93 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.89 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.87 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.86 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.85 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.84 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.82 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.81 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.8 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.79 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.78 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.77 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.77 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.76 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.75 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.73 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.71 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.71 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.7 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.68 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.65 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.59 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.58 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.58 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.56 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.54 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.52 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.51 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.51 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.5 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.46 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.42 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.4 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.38 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.31 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.31 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.3 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.3 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.3 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.29 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.29 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.28 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.28 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.25 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.22 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.21 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.18 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.17 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.16 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.15 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.14 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.14 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.12 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.1 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.07 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.04 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.04 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.01 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.01 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.0 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.98 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.93 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.92 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.91 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.91 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.88 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.88 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.87 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.85 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.83 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.81 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.78 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.74 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.71 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.7 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.66 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.62 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.62 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.59 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.57 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.57 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.54 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.52 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.51 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.45 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.36 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.35 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.32 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.26 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.26 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.25 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.22 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.18 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.18 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.17 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.15 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.14 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.14 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.12 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.11 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.1 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.09 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.02 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.01 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.0 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.99 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.96 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.89 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.86 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.86 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.79 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.78 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.76 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.56 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.55 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.52 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.51 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.5 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.48 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.48 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.45 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.39 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.29 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.28 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.24 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.23 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.21 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.18 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.13 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.11 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.08 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.06 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.02 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.94 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.93 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.88 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.67 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.64 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.4 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.21 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.15 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.13 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.09 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.02 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.97 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.74 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.7 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.69 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.68 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.66 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.65 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.57 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.44 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.42 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.4 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 95.35 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.32 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.0 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.99 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.91 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.82 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.8 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.68 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.62 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.55 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.37 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.0 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.96 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.87 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.85 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.85 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.8 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.97 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.92 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.81 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.65 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.56 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.41 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.27 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.27 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.25 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.01 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.0 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.79 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 90.7 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.51 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.42 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.36 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 90.29 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 90.08 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.81 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.46 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.35 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 89.31 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 88.87 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.78 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.37 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 87.84 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 87.73 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 87.46 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 87.24 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 87.05 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 86.77 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 85.55 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 85.43 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 85.07 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 84.63 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 84.53 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 84.45 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 83.98 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 83.91 | |
| PRK10115 | 686 | protease 2; Provisional | 83.78 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 83.73 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 83.46 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 83.03 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 82.97 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 81.38 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 81.26 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=362.36 Aligned_cols=321 Identities=17% Similarity=0.292 Sum_probs=279.9
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-+|.++|.|++|+|+|..||+|+.|.++|+||+.+... ..+.++|.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---------------------------~~t~KgH~------- 157 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP---------------------------LFTCKGHK------- 157 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc---------------------------ceeecCCc-------
Confidence 37999999999999999999999999999999997653 37889999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
.-|.||+|+ |||+.|++|+.||+|++||..+++.+-.
T Consensus 158 -----~WVlcvaws--PDgk~iASG~~dg~I~lwdpktg~~~g~------------------------------------ 194 (480)
T KOG0271|consen 158 -----NWVLCVAWS--PDGKKIASGSKDGSIRLWDPKTGQQIGR------------------------------------ 194 (480)
T ss_pred -----cEEEEEEEC--CCcchhhccccCCeEEEecCCCCCcccc------------------------------------
Confidence 899999998 8999999999999999999998874321
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-----CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
. +.+|...|++++|.| ..++|+++ .||.|+|||+. .+.++..
T Consensus 195 -----------------------~-l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~------- 242 (480)
T KOG0271|consen 195 -----------------------A-LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRT------- 242 (480)
T ss_pred -----------------------c-ccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEE-------
Confidence 1 279999999999965 56789998 99999999999 6666654
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe------
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA------ 336 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s------ 336 (501)
+.+|+.+|+|+.|--+| +|++++.|++|++|+...+..+ +.+.+ |..+|+.++.+
T Consensus 243 lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~lkG-------------HahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RELKG-------------HAHWVNHLALSTDYVLR 303 (480)
T ss_pred eccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hhhcc-------------cchheeeeeccchhhhh
Confidence 78999999999998764 8999999999999999888665 44444 67788888776
Q ss_pred -----eCCC-------------------------EEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcc
Q 010801 337 -----NDGQ-------------------------HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (501)
Q Consensus 337 -----p~~~-------------------------~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (501)
|.++ .|++|+| .++.+|+-....+++..+.+|...+
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV------------- 370 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV------------- 370 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe-------------
Confidence 2233 4999976 9999999876677999999999987
Q ss_pred eeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec--cc
Q 010801 386 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS 462 (501)
Q Consensus 386 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~ 462 (501)
+.+.||||++++|++|.|.+|++|+..+|+.+ .+|.+|-.+|+.++++. |.++ |++|+.|.+ ++| ..
T Consensus 371 --n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-asfRGHv~~VYqvawsa--DsRL-----lVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 371 --NHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-ASFRGHVAAVYQVAWSA--DSRL-----LVSGSKDSTLKVWDVRT 440 (480)
T ss_pred --eeEEECCCccEEEEeecccceeeeeCCCcchh-hhhhhccceeEEEEecc--CccE-----EEEcCCCceEEEEEeee
Confidence 79999999999999999999999999999665 89999999999999998 8888 999999999 999 44
Q ss_pred cCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 463 SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 463 ~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.....++.+|...|.++.|+|||..+|+|+.|. +++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 566777889999999999999999999999665 66663
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=338.42 Aligned_cols=426 Identities=52% Similarity=0.825 Sum_probs=355.2
Q ss_pred cccchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCC
Q 010801 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (501)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (501)
..+..|++.|.++.. ++..+-|++|.|..+|.+||||+.+|+|.+|.-+....
T Consensus 7 ~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~---------------------- 59 (433)
T KOG1354|consen 7 NEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK---------------------- 59 (433)
T ss_pred chhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc----------------------
Confidence 355689999988853 56678899999999999999999999999998653321
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
.++++...++.|+|||+|++++++++.|+.|+|.+..+...++..+.|++|++|.+....... ...+...
T Consensus 60 ~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~--------- 129 (433)
T KOG1354|consen 60 GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPE--------- 129 (433)
T ss_pred cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccc---------
Confidence 278899999999999999999999999999999976777889999999999999998654333 1111000
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEI 248 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~ 248 (501)
.+ +.+..+.-..+.+-..+......|.+.+...|...|++++++.|++.+++++|=.|.+|+++.
T Consensus 130 -~~--------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei 194 (433)
T KOG1354|consen 130 -EG--------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEI 194 (433)
T ss_pred -cC--------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence 00 111111112333444455566789999989999999999999999999999999999999999
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
..++..+++++|..++..+.-|++..|+|..+++|+..+..|+|++.|+|...++..+.+.++. ++.|..+++|.+--.
T Consensus 195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiIs 273 (433)
T KOG1354|consen 195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEIIS 273 (433)
T ss_pred cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHhh
Confidence 9999999999999999999999999999999899999999999999999999999999999999 899999999999999
Q ss_pred ceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 329 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.|..+.|+++|+|+++.+.-+|++||+..+.+++.+++.|......+|++|++++|++...++|+.++.+++||+....+
T Consensus 274 SISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 274 SISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF 353 (433)
T ss_pred hhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence 99999999999999999889999999988899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCE
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~ 487 (501)
+++++..|.....++++.......-.... .+. .++++.+.. .+ .....++...|.+.+|||.++.
T Consensus 354 rvf~~~~gsk~d~tl~asr~~~~~~~~~k---~~~-----V~~~g~r~~~~~------~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 354 RVFNLARGSKEDFTLEASRKNMKPRKVLK---LRL-----VSSSGKRKRDEI------SVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred EEecCCCCcceeecccccccCCccccccc---cee-----eecCCCcccccc------ccchhhhhhHHHhhccCCccce
Confidence 99999888777777776665532211111 111 444444433 33 3445677889999999999999
Q ss_pred EEEeeCCeEEEEeC
Q 010801 488 IACANGNSLFFHYA 501 (501)
Q Consensus 488 la~~~~~~~~i~~~ 501 (501)
+|++..+++|||++
T Consensus 420 ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 420 IAVAATNNLYIFQD 433 (433)
T ss_pred eeeeecCceEEecC
Confidence 99999999999975
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=322.95 Aligned_cols=285 Identities=19% Similarity=0.286 Sum_probs=252.7
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.++..+.+|..+.||+|++.||||+-+|.++||+..+.. .+.+|.||.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~----- 217 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHT----- 217 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccc-----
Confidence 344567899999999999999999999999999988654 458899999
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.++.|+|..++..+++|+.||++++|++.+......+
T Consensus 218 -------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l--------------------------------- 257 (459)
T KOG0272|consen 218 -------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL--------------------------------- 257 (459)
T ss_pred -------cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh---------------------------------
Confidence 8999999996435778999999999999999886533322
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+|...|..++|+|+|++|+++ .|.+-++||+++....+. .++
T Consensus 258 ----------------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------QEG 301 (459)
T KOG0272|consen 258 ----------------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------QEG 301 (459)
T ss_pred ----------------------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------hcc
Confidence 7999999999999999999999 999999999996655543 689
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|.+++|+||| .++++|+.|..-+|||+++++.+ ..+. +|...|.+|+|+|+|..||+|
T Consensus 302 Hs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~L~-------------gH~k~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MFLA-------------GHIKEILSVAFSPNGYHLATG 363 (459)
T ss_pred cccccceeEecCCC-ceeeccCccchhheeecccCcEE----EEec-------------ccccceeeEeECCCceEEeec
Confidence 99999999999999 99999999999999999999754 3444 478999999999999999998
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
+ |++++|||++. .+.+.++.+|...+ +.+.|+| .|.+|+|++.|++++||...+... .+.+
T Consensus 364 s~Dnt~kVWDLR~-r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~-~ksL 426 (459)
T KOG0272|consen 364 SSDNTCKVWDLRM-RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP-LKSL 426 (459)
T ss_pred CCCCcEEEeeecc-cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCccc-chhh
Confidence 5 69999999996 88899999999987 6899999 689999999999999999998844 5999
Q ss_pred ecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 424 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.+|.+.|.++.+++ ++.. +++++.|.+ ++|.
T Consensus 427 aGHe~kV~s~Dis~--d~~~-----i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISP--DSQA-----IATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEecc--CCce-----EEEeccCceeeecc
Confidence 99999999999999 7777 999999999 9994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-46 Score=316.12 Aligned_cols=285 Identities=16% Similarity=0.233 Sum_probs=248.5
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.|..-|.|++|+|||+.||+|+.||+|++||.++|+. ....|.+|.
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--------------------------~g~~l~gH~------- 200 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--------------------------IGRALRGHK------- 200 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--------------------------ccccccCcc-------
Confidence 36999999999999999999999999999999999876 346799999
Q ss_pred ccccccceeEEEEee---cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 109 SLEIEEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~---~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|++++|.| .|...+|++++.||.++|||+..+.+....
T Consensus 201 -----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-------------------------------- 243 (480)
T KOG0271|consen 201 -----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-------------------------------- 243 (480)
T ss_pred -----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------------------
Confidence 8999999986 567789999999999999999987765543
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+|...|+|+.|-.+| +|++| .|++|++|+.. .+.+.+ .+.
T Consensus 244 -----------------------------sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r-------~lk 285 (480)
T KOG0271|consen 244 -----------------------------SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCR-------ELK 285 (480)
T ss_pred -----------------------------ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHH-------hhc
Confidence 7999999999998776 88999 99999999998 455555 388
Q ss_pred CcccceEEEEEe-----------cCC------------------------CcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 265 DLTEVITSAEFH-----------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 265 ~~~~~v~~v~~~-----------p~~------------------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
+|...|+.++.+ |.+ ++.|++|+.|.++.+|+....+.. +..
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---i~r 362 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---ITR 362 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc---hhh
Confidence 999999999887 222 135999999999999997654311 122
Q ss_pred eecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
..+|..-|+.+.||||++++|+++ |..|++||-++ ++.+.+|.+|-..+ +
T Consensus 363 -------------mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------Y 413 (480)
T KOG0271|consen 363 -------------MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------Y 413 (480)
T ss_pred -------------hhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------E
Confidence 345788999999999999999998 59999999997 99999999999887 7
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.++|+.|.++|++||.|.++++|++.+. .+...+.+|.+.|.++.++| +|.. .++|+.|+. ++|.
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwsp--DG~r-----V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSP--DGQR-----VASGGKDKVLRLWR 479 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecC--CCce-----eecCCCceEEEeec
Confidence 8999999999999999999999999987 66689999999999999999 7887 899999999 9983
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=301.30 Aligned_cols=276 Identities=17% Similarity=0.218 Sum_probs=245.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.+|..+.|+ .++..|++||.+|.++||+..+......+
T Consensus 176 rPis~~~fS--~ds~~laT~swsG~~kvW~~~~~~~~~~l---------------------------------------- 213 (459)
T KOG0272|consen 176 RPISGCSFS--RDSKHLATGSWSGLVKVWSVPQCNLLQTL---------------------------------------- 213 (459)
T ss_pred CcceeeEee--cCCCeEEEeecCCceeEeecCCcceeEEE----------------------------------------
Confidence 789999998 79999999999999999999887544433
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+|...|.++.|+|. +..+++| .||++++|+++ +...+. .+.+|...|
T Consensus 214 ---------------------~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-~e~~l~-------~l~gH~~RV 264 (459)
T KOG0272|consen 214 ---------------------RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-QETPLQ-------DLEGHLARV 264 (459)
T ss_pred ---------------------eccccceeeEEEccCCCccceeeeccCCceeeeccC-CCcchh-------hhhcchhhh
Confidence 799999999999997 6689999 99999999999 444443 389999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
..++|+|+| ++|++++.|.+-++||++++... ... .||...|.+++|.|||.++++|+ |..
T Consensus 265 s~VafHPsG-~~L~TasfD~tWRlWD~~tk~El----L~Q-------------EGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 265 SRVAFHPSG-KFLGTASFDSTWRLWDLETKSEL----LLQ-------------EGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred eeeeecCCC-ceeeecccccchhhcccccchhh----Hhh-------------cccccccceeEecCCCceeeccCccch
Confidence 999999999 99999999999999999998643 222 45889999999999999999986 688
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
-+|||+++ ++.+-.+.+|...+ .+++|+|+|-.|||||.|++++|||+...+. ..++.+|.+.
T Consensus 327 ~RvWDlRt-gr~im~L~gH~k~I---------------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nl 389 (459)
T KOG0272|consen 327 GRVWDLRT-GRCIMFLAGHIKEI---------------LSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNL 389 (459)
T ss_pred hheeeccc-CcEEEEecccccce---------------eeEeECCCceEEeecCCCCcEEEeeeccccc-ceecccccch
Confidence 89999998 99999999999876 7999999999999999999999999987655 6999999999
Q ss_pred ccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEeC
Q 010801 430 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 501 (501)
|..+.|.|. .|++ |++++.|+. +||.. ...+..+.+|+.+|.+++.+|++..+++++ ++.+.+|++
T Consensus 390 VS~Vk~~p~-~g~f-----L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 390 VSQVKYSPQ-EGYF-----LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred hhheEeccc-CCeE-----EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 999999994 7888 999999999 99944 367778889999999999999999999999 667999974
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=261.80 Aligned_cols=296 Identities=16% Similarity=0.210 Sum_probs=232.9
Q ss_pred ccccccceEEEEEccC-CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.-.|++.|+.++..+. -+.|++++.|.++.+|++...... -..+.+.+.||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs----- 63 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS----- 63 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc-----
Confidence 4469999999999996 578899999999999998865432 345678899999
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..|..+..+ ++|++.++++.|+++++||+.+++....+
T Consensus 64 -------H~v~dv~~s--~dg~~alS~swD~~lrlWDl~~g~~t~~f--------------------------------- 101 (315)
T KOG0279|consen 64 -------HFVSDVVLS--SDGNFALSASWDGTLRLWDLATGESTRRF--------------------------------- 101 (315)
T ss_pred -------eEecceEEc--cCCceEEeccccceEEEEEecCCcEEEEE---------------------------------
Confidence 889999997 89999999999999999999998644332
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+|...|.+++|++|.+.+++| .|++|++|++. +...+.+- -..
T Consensus 102 ----------------------------~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~------~~~ 146 (315)
T KOG0279|consen 102 ----------------------------VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH------EDS 146 (315)
T ss_pred ----------------------------EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe------cCC
Confidence 7999999999999999999999 99999999998 55555431 223
Q ss_pred cccceEEEEEecCC-CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+.+.|.++.|+|+. ..+|++++.|++|++||+++.++. .. +.||.+.++.+++||||..+++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----~~-------------~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----TT-------------FIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----hc-------------cccccccEEEEEECCCCCEEec
Confidence 47899999999983 279999999999999999987543 22 3457899999999999999999
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
|+ ||.+.+||++. ++.+..+.+... + .+++|+|+.-+|+.+.. ..|+|||++++..+ ..+
T Consensus 210 Ggkdg~~~LwdL~~-~k~lysl~a~~~-v---------------~sl~fspnrywL~~at~-~sIkIwdl~~~~~v-~~l 270 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNE-GKNLYSLEAFDI-V---------------NSLCFSPNRYWLCAATA-TSIKIWDLESKAVV-EEL 270 (315)
T ss_pred CCCCceEEEEEccC-CceeEeccCCCe-E---------------eeEEecCCceeEeeccC-CceEEEeccchhhh-hhc
Confidence 86 59999999985 777777764433 3 79999999766665544 56999999988443 222
Q ss_pred ecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 424 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
+...... + ...-......++|++||..|.+|- ++.+.+|.
T Consensus 271 ~~d~~g~-----s--------------------------------~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 271 KLDGIGP-----S--------------------------------SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ccccccc-----c--------------------------------cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 1111100 0 001111456899999999999998 56688886
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=278.40 Aligned_cols=441 Identities=43% Similarity=0.681 Sum_probs=330.0
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCcee
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (501)
.|++.|.|+++.........+.|++|.|...|.|||+|...|+|.+|..+...- -+++
T Consensus 7 ~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~----------------------ceyk 64 (460)
T COG5170 7 ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG----------------------CEYK 64 (460)
T ss_pred hhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccccc----------------------cchh
Confidence 589999999999999899999999999999999999999999999998664321 1788
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc-cc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 171 (501)
+.+.|++|++||+|++++++++.|+.|.|....+-..++..+.|++|++|.+....++.+.+.+.... ...+ .+
T Consensus 65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~-----~~~~~~g 139 (460)
T COG5170 65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDS-----FHSPMGG 139 (460)
T ss_pred hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccc-----cccccCC
Confidence 99999999999999999999999999999854445678888899999999998776544433222210 0000 00
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccC---ceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGN---SVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEI 248 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~ 248 (501)
.+.. ...+++-.+.. .....+.+.+...|...+.+++|+.|.+.+++++|=.|.+|+++.
T Consensus 140 ~~~s-----------------~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i 202 (460)
T COG5170 140 PLTS-----------------TKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEI 202 (460)
T ss_pred CcCC-----------------HHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccc
Confidence 0000 00111111111 112334555657899999999999999999999999999999998
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
...+..+++++|..+.....-|++..|+|..++.+...+..|.|++-|+|+..++....+.++. ...+....++.+-..
T Consensus 203 ~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivs 281 (460)
T COG5170 203 IDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVS 281 (460)
T ss_pred cCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhh
Confidence 8899999999999998888999999999998789999999999999999998888877777776 556666667777788
Q ss_pred ceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 329 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.|..+.|+++|+||++.+..++++||++....++.++..|......+++.|++++|++...+.||.|.+.+.+|+..+..
T Consensus 282 SISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 282 SISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred hhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence 99999999999999999889999999999899999999999999999999999999999999999999999999999888
Q ss_pred EEEecCCCCcc----eEEEecccCc---ccceeeccCCccccCccc-eeeeecccceeeccccCCcccccccCCCeEEEE
Q 010801 409 RIFSHGVGSAG----GITVEAGKNE---NRKPILQAAPRARRSSLS-NLTRGLYRQAHENSSSGHHELSYNLSSKLLHLA 480 (501)
Q Consensus 409 ~iwd~~~~~~~----~~~~~~~~~~---v~~~~~~~~~~~~~~~~~-~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~ 480 (501)
-||-+.+.... +..+..+..+ +.+..-+.........-. -..+.+.+|..+- ..-....++...|.+-.
T Consensus 362 giyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~---~eD~d~ld~~k~ilh~s 438 (460)
T COG5170 362 GIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA---CEDPDNLDLLKKILHRS 438 (460)
T ss_pred eeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee---ccCcchhHHHHHHHhhc
Confidence 88875442111 1222222111 111111100000000000 0111111111000 01112234566888999
Q ss_pred EccCCCEEEEeeCCeEEEEeC
Q 010801 481 WHPTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 481 ~sp~~~~la~~~~~~~~i~~~ 501 (501)
|||.++.+|++..++++||++
T Consensus 439 Whp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 439 WHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred cCCcccceeeeecCceEEEec
Confidence 999999999999999999974
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=278.71 Aligned_cols=374 Identities=16% Similarity=0.226 Sum_probs=279.8
Q ss_pred ccchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCC
Q 010801 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (501)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (501)
+.|.++++..++ .|..-|+|+.|+|||.++|+++.||.|.+||-.+++..
T Consensus 176 eGPPFKFk~s~r--------~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v---------------------- 225 (603)
T KOG0318|consen 176 EGPPFKFKSSFR--------EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV---------------------- 225 (603)
T ss_pred eCCCeeeeeccc--------ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE----------------------
Confidence 344556665555 57889999999999999999999999999999988753
Q ss_pred ceeeEeeec---cCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccc
Q 010801 90 EYRYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (501)
Q Consensus 90 ~~~~~~~~~---~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 166 (501)
..+. +|+ +.|.+|+|+ ||++.|++++.|.+++|||+.+.++.....+...-
T Consensus 226 -----g~l~~~~aHk------------GsIfalsWs--PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v------- 279 (603)
T KOG0318|consen 226 -----GELEDSDAHK------------GSIFALSWS--PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV------- 279 (603)
T ss_pred -----EEecCCCCcc------------ccEEEEEEC--CCCceEEEecCCceEEEEEeeccceEEEeecCCch-------
Confidence 4455 788 999999998 89999999999999999999999887766443211
Q ss_pred cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEE
Q 010801 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (501)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd 245 (501)
....+.+.+- ...+.+. ..+|.+.+++..... .++.+ .+|...|++++.+|++++|++| .||.|.-|+
T Consensus 280 ---~dqqvG~lWq--kd~lItV--Sl~G~in~ln~~d~~---~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 280 ---EDQQVGCLWQ--KDHLITV--SLSGTINYLNPSDPS---VLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred ---hceEEEEEEe--CCeEEEE--EcCcEEEEecccCCC---hhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 1111111111 1111222 237788888887643 55555 7999999999999999999999 999999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
..++. .-+. .-..|...|.+++-+..+ .+++.+.|.++++.++..+..... ...+.
T Consensus 349 ~~~g~-~~~~------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~--~~~~l------------- 404 (603)
T KOG0318|consen 349 SGSGT-SDRL------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKS--EVVKL------------- 404 (603)
T ss_pred cCCcc-cccc------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCccccc--ceeec-------------
Confidence 98443 3221 126799999999988754 477889999999999876543221 11121
Q ss_pred cccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 326 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
......++..+++.+++...++.|.+..-. +.+.++...-.. .+++++|++..+|.|+.|
T Consensus 405 -g~QP~~lav~~d~~~avv~~~~~iv~l~~~---~~~~~~~~~y~~----------------s~vAv~~~~~~vaVGG~D 464 (603)
T KOG0318|consen 405 -GSQPKGLAVLSDGGTAVVACISDIVLLQDQ---TKVSSIPIGYES----------------SAVAVSPDGSEVAVGGQD 464 (603)
T ss_pred -CCCceeEEEcCCCCEEEEEecCcEEEEecC---Ccceeecccccc----------------ceEEEcCCCCEEEEeccc
Confidence 122348888888877777767667776532 222222211111 589999999999999999
Q ss_pred CeEEEEecCCCC-cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc---ccccccCCCeEEEE
Q 010801 406 NLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH---ELSYNLSSKLLHLA 480 (501)
Q Consensus 406 g~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~---~~~~~~~~~i~~~~ 480 (501)
|.|+||.+..+. .....+..|..+++.++++| ++.+ ||.+...++ .+|+..... ....-|+.+|++++
T Consensus 465 gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp--d~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a 537 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP--DGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA 537 (603)
T ss_pred ceEEEEEecCCcccceeeeecccCCceEEEECC--CCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE
Confidence 999999998764 33457889999999999999 8888 999999999 999554332 23446899999999
Q ss_pred EccCCCEEEEee-CCeEEEEeC
Q 010801 481 WHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 481 ~sp~~~~la~~~-~~~~~i~~~ 501 (501)
|+|+..++|+|+ +..++||+.
T Consensus 538 WsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 538 WSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eCCCceEEEeccccceEEEEEc
Confidence 999999999999 666999973
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=292.59 Aligned_cols=393 Identities=14% Similarity=0.132 Sum_probs=286.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|+.+|..++|+|.|..||+|+.||.|+|||+..+.+ ...|+||.
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~---------------------------th~fkG~g-------- 147 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC---------------------------THSFKGHG-------- 147 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE---------------------------EEEecCCC--------
Confidence 4899999999999999999999999999999997654 48899999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccce-eeeec--------cCCCcc---cccccc-------cccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKE--------MDHFPF---VSSENT-------LLAE 170 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~-~~~~~--------~~~~~~---~~~~~~-------~~~~ 170 (501)
+.|.++.|.|..+...|++|..|+++++||+++... ..... ....++ +-.+++ .+..
T Consensus 148 ----GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 148 ----GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ 223 (775)
T ss_pred ----ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence 999999999777777789999999999999985432 11111 011000 000000 0000
Q ss_pred cC----------ccccCCCCC-----CcccccceeccCcceEEEeccCc-------------------------------
Q 010801 171 KN----------FMNEHNPPS-----FAHGYHLEWTENMATKIANVGNS------------------------------- 204 (501)
Q Consensus 171 ~~----------~~~~~~~~~-----~~~~~~~~~~~~~~i~~w~~~~~------------------------------- 204 (501)
.. +-.....++ ..++.++ ...|.+++|+.+..
T Consensus 224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta--G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta 301 (775)
T KOG0319|consen 224 YKKLKTLPLYESLESVVRLREELGGKGEYIITA--GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA 301 (775)
T ss_pred hhhhheechhhheeeEEEechhcCCcceEEEEe--cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence 00 000000000 0011110 11222222322210
Q ss_pred ------------e-----------------------------eeeeeE---------eecCCcccceEEEEecCCCCEEE
Q 010801 205 ------------V-----------------------------HARCQK---------VYPHAHDFNINSISNNSDCETFV 234 (501)
Q Consensus 205 ------------~-----------------------------~~~~~~---------~~~~~~~~~v~~l~~~~~~~~l~ 234 (501)
. ...+++ .+..+|...|.++....+|-+|+
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEE
Confidence 0 000001 13378999999998666778999
Q ss_pred EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecc
Q 010801 235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (501)
Q Consensus 235 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 313 (501)
+| .|+++++|.++........ .....+|.+.|.+++++..+..+|++++.|+++++|++...+..... -.+
T Consensus 382 t~sKD~svilWr~~~~~~~~~~----~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~-~~~--- 453 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLC----VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP-IVL--- 453 (775)
T ss_pred EecCCceEEEEEecCCcchhhh----hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc-cee---
Confidence 99 9999999998522211111 11357899999999998888789999999999999999873322110 111
Q ss_pred cccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 314 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
..+.....|...|++++++|+.++||+|+ |.+.+||++. +.....++.+|...+ +++.|
T Consensus 454 ----~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGv---------------w~V~F 513 (775)
T KOG0319|consen 454 ----TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGV---------------WCVSF 513 (775)
T ss_pred ----hhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccce---------------EEEEe
Confidence 11222356889999999999999999997 5999999998 489999999999876 89999
Q ss_pred cCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec--cccCCcccc
Q 010801 393 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS 469 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~ 469 (501)
+|..+.++|+|.|++|+||.+++.+++ +++.+|...|..+.|.. +++. |++++.||- ++| +.++....+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~--~~~q-----liS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIR--NGKQ-----LISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeee--CCcE-----EEeccCCCcEEEEeccchhhhhhh
Confidence 999999999999999999999999776 99999999999999987 7777 999999999 999 555667778
Q ss_pred cccCCCeEEEEEccCCCEEEEeeCCe-EEEE
Q 010801 470 YNLSSKLLHLAWHPTTNLIACANGNS-LFFH 499 (501)
Q Consensus 470 ~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~ 499 (501)
..|+.+|.+++-+|.+.++++|+.|+ +.+|
T Consensus 586 D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 586 DAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred hhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 89999999999999999999999777 4444
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=253.52 Aligned_cols=290 Identities=14% Similarity=0.215 Sum_probs=236.3
Q ss_pred CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEee
Q 010801 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (501)
Q Consensus 44 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (501)
.-+||++++|-+||+|...+|.+ ..+++-.+ ..|+.+...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C---------------------------~rTiqh~d------------sqVNrLeiT- 49 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC---------------------------SRTIQHPD------------SQVNRLEIT- 49 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE---------------------------EEEEecCc------------cceeeEEEc-
Confidence 45899999999999999998865 35666545 889999997
Q ss_pred cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccC
Q 010801 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (501)
Q Consensus 124 ~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 203 (501)
|+++.|++++. ..||+||+.++..
T Consensus 50 -pdk~~LAaa~~-qhvRlyD~~S~np------------------------------------------------------ 73 (311)
T KOG0315|consen 50 -PDKKDLAAAGN-QHVRLYDLNSNNP------------------------------------------------------ 73 (311)
T ss_pred -CCcchhhhccC-CeeEEEEccCCCC------------------------------------------------------
Confidence 78888888876 4699999998762
Q ss_pred ceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcE
Q 010801 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
.++..| .+|...|.++.|..+|+.+++| +||+++|||++. ..+.+ ...|..+|+++..+|+. ..
T Consensus 74 ----~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR--------~~~~~spVn~vvlhpnQ-te 138 (311)
T KOG0315|consen 74 ----NPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQR--------NYQHNSPVNTVVLHPNQ-TE 138 (311)
T ss_pred ----CceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccch--------hccCCCCcceEEecCCc-ce
Confidence 233344 7999999999999999999999 999999999994 33433 45577999999999998 89
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeC----
Q 010801 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM---- 357 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~---- 357 (501)
|++|..+|.|++||+.+..... ..+.. ....|.++...|||.+++++.+ |..++|++-.
T Consensus 139 Lis~dqsg~irvWDl~~~~c~~---~liPe-------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~ 202 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSCTH---ELIPE-------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA 202 (311)
T ss_pred EEeecCCCcEEEEEccCCcccc---ccCCC-------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence 9999999999999998864321 11111 1368999999999999999977 9999999854
Q ss_pred -CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 358 -DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
.-.++..++.|...+ ..+-+|||+++||++|.|.+++||+.++.-.+...+++|...++..+|+
T Consensus 203 s~l~P~~k~~ah~~~i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHI---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred ccceEhhheecccceE---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 123556677777755 7899999999999999999999999998755678899999999999999
Q ss_pred cCCccccCccceeeeecccce-eecc--ccCCcccccccCCCeEEEEEc
Q 010801 437 AAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWH 482 (501)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~~-~iw~--~~~~~~~~~~~~~~i~~~~~s 482 (501)
. ++.+ |++|+.|+. ++|+ .++.+....+|-+...+++.+
T Consensus 268 ~--dg~Y-----lvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 268 A--DGEY-----LVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred c--CccE-----EEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 8 8898 999999999 9994 445556666777766666543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=256.12 Aligned_cols=288 Identities=12% Similarity=0.196 Sum_probs=237.9
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.-+|...|.++.|++|+++|++++.||.+.|||..+..+. ..+.-..
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------------haipl~s------ 97 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------------HAIPLPS------ 97 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---------------------------eEEecCc------
Confidence 3469999999999999999999999999999998766442 2222223
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.-|...+|+ |.|++++.|+.|+...||++........
T Consensus 98 ------~WVMtCA~s--PSg~~VAcGGLdN~Csiy~ls~~d~~g~----------------------------------- 134 (343)
T KOG0286|consen 98 ------SWVMTCAYS--PSGNFVACGGLDNKCSIYPLSTRDAEGN----------------------------------- 134 (343)
T ss_pred ------eeEEEEEEC--CCCCeEEecCcCceeEEEeccccccccc-----------------------------------
Confidence 778999998 7899999999999999999885421100
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
....+. +.+|.+.+.|+.|-+|+ .|+++ .|.+..+||+++ ++.... +.+|
T Consensus 135 -------------------~~v~r~-l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~-g~~~~~-------f~GH 185 (343)
T KOG0286|consen 135 -------------------VRVSRE-LAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET-GQQTQV-------FHGH 185 (343)
T ss_pred -------------------ceeeee-ecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc-ceEEEE-------ecCC
Confidence 011122 27999999999999876 56666 999999999994 444443 7899
Q ss_pred ccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 267 TEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
.+.|.+++++| ++ +.+++|+-|+..++||+|.+... +.|.+ |...|+++.|.|+|.-+++|
T Consensus 186 ~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c~----qtF~g-------------hesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQCV----QTFEG-------------HESDINSVRFFPSGDAFATG 247 (343)
T ss_pred cccEEEEecCCCCC-CeEEecccccceeeeeccCccee----Eeecc-------------cccccceEEEccCCCeeeec
Confidence 99999999999 66 99999999999999999998544 45544 78999999999999999999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+| ++.++||++. .+.+..+.. .. .++++++++||..|++|++|..|.++.+||.-.+ +....+.
T Consensus 248 SDD~tcRlyDlRa-D~~~a~ys~-~~------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~ 312 (343)
T KOG0286|consen 248 SDDATCRLYDLRA-DQELAVYSH-DS------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA 312 (343)
T ss_pred CCCceeEEEeecC-CcEEeeecc-Cc------------ccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEee
Confidence 76 9999999997 777777763 22 2344589999999999999999999999998877 4568999
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+|.+.|.++..+| +|.. +++|+-|.. +||
T Consensus 313 GHeNRvScl~~s~--DG~a-----v~TgSWDs~lriW 342 (343)
T KOG0286|consen 313 GHENRVSCLGVSP--DGMA-----VATGSWDSTLRIW 342 (343)
T ss_pred ccCCeeEEEEECC--CCcE-----EEecchhHheeec
Confidence 9999999999999 7777 999999999 998
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=252.43 Aligned_cols=289 Identities=15% Similarity=0.176 Sum_probs=242.6
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
..+..++++||. +.|.++.|+ +|.++++++|.||.+.|||..+......+
T Consensus 44 ~~~~rr~LkGH~------------~Ki~~~~ws--~Dsr~ivSaSqDGklIvWDs~TtnK~hai---------------- 93 (343)
T KOG0286|consen 44 QMRTRRTLKGHL------------NKIYAMDWS--TDSRRIVSASQDGKLIVWDSFTTNKVHAI---------------- 93 (343)
T ss_pred eeeeEEEecccc------------cceeeeEec--CCcCeEEeeccCCeEEEEEcccccceeEE----------------
Confidence 344557899999 999999998 89999999999999999998876533332
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
+-....|..++|+|.|+++++| -|+...||++..
T Consensus 94 ---------------------------------------------pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 94 ---------------------------------------------PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred ---------------------------------------------ecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 2235678899999999999999 999999999984
Q ss_pred C--CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec
Q 010801 249 S--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (501)
Q Consensus 249 ~--~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (501)
. ....+. ...+.+|.+.+.++.|-+| ..|++++.|.+..+||+.+++.. ..| .||
T Consensus 129 ~d~~g~~~v----~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~----~~f-------------~GH 185 (343)
T KOG0286|consen 129 RDAEGNVRV----SRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQT----QVF-------------HGH 185 (343)
T ss_pred cccccccee----eeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEE----EEe-------------cCC
Confidence 3 111111 1248899999999999986 58999999999999999998654 344 458
Q ss_pred ccceeEEEEee-CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 327 IASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 327 ~~~i~~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
.+.|.++.++| +++.+++|+ |+..+|||++. +...++|.+|+..+ +++.|.|+|.-+++|++
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDI---------------Nsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDI---------------NSVRFFPSGDAFATGSD 249 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeeccccccc---------------ceEEEccCCCeeeecCC
Confidence 89999999999 999999985 79999999996 89999999999876 79999999999999999
Q ss_pred CCeEEEEecCCCCcceEEEe--cccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEE
Q 010801 405 SNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHL 479 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~ 479 (501)
|++.++||+...+++ ..+. .-..+|++++|+. .|++ |..|-.|.. .+|+. ++....+.+|+.+|.++
T Consensus 250 D~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~--SGRl-----Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 250 DATCRLYDLRADQEL-AVYSHDSIICGITSVAFSK--SGRL-----LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred CceeEEEeecCCcEE-eeeccCcccCCceeEEEcc--cccE-----EEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence 999999999987554 3333 3345789999998 7888 888888888 99933 46777888999999999
Q ss_pred EEccCCCEEEEee-CCeEEEEe
Q 010801 480 AWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~-~~~~~i~~ 500 (501)
..+|||.-|++|+ +..+.||.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 9999999999999 66699995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=273.84 Aligned_cols=280 Identities=20% Similarity=0.321 Sum_probs=242.1
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-.|..|.|.|+|+.|++|+..|.+.+|+.. .+.+...+++|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~---------------------------~fnFEtilQaHD---------- 138 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT---------------------------SFNFETILQAHD---------- 138 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc---------------------------eeeHHHHhhhhc----------
Confidence 4589999999999999999999999999965 344556789999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|.++.|+ +++.++++|+.+|.|+.|+..-...+...
T Consensus 139 --s~Vr~m~ws--~~g~wmiSgD~gG~iKyWqpnmnnVk~~~-------------------------------------- 176 (464)
T KOG0284|consen 139 --SPVRTMKWS--HNGTWMISGDKGGMIKYWQPNMNNVKIIQ-------------------------------------- 176 (464)
T ss_pred --ccceeEEEc--cCCCEEEEcCCCceEEecccchhhhHHhh--------------------------------------
Confidence 999999998 89999999999999999998755432211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..|...|++++|+|....|+++ +||+|+|||.....+... +.+|.-.|
T Consensus 177 -----------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--------L~GHgwdV 225 (464)
T KOG0284|consen 177 -----------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--------LRGHGWDV 225 (464)
T ss_pred -----------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--------eccCCCCc
Confidence 3556899999999998899999 999999999985544332 78999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
.+++|+|.. .++++++.|..|++||.++++.+ ..+. +|+..|..+.|+|++++|++++ |..
T Consensus 226 ksvdWHP~k-gLiasgskDnlVKlWDprSg~cl----~tlh-------------~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 226 KSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCL----ATLH-------------GHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred ceeccCCcc-ceeEEccCCceeEeecCCCcchh----hhhh-------------hccceEEEEEEcCCCCeeEEccCCce
Confidence 999999998 99999999999999999999754 2322 3678999999999999999986 699
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
++++|+++ .+.++++++|...+ +++.|+| ...+|.+|+.||.|..|.+...+.+...-.+|..
T Consensus 288 ~kv~DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 288 CKVFDIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG 351 (464)
T ss_pred EEEEehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence 99999996 88899999999876 8999999 4668889999999999999866666677889999
Q ss_pred cccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
.|+++++.| -|.+ |++|+.|.. +.|..
T Consensus 352 ~iwsl~~hP--lGhi-----l~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 352 EIWSLAYHP--LGHI-----LATGSNDRTVRFWTR 379 (464)
T ss_pred ceeeeeccc--ccee-----EeecCCCcceeeecc
Confidence 999999999 6777 999999999 99933
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=273.83 Aligned_cols=379 Identities=15% Similarity=0.170 Sum_probs=291.9
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|.++.|+.|.++|++|+.|-+++||.++..+.. ....+.+|.
T Consensus 142 ~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-------------------------~~~~l~gHk------- 189 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-------------------------FTYALNGHK------- 189 (893)
T ss_pred cCCccceeEEEeccCCceEEeccccceEEEEEecccccc-------------------------ceEeccCCC-------
Confidence 468999999999999999999999999999999876542 456789999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccc--ceeee---------eccC-CCcc-----ccc-ccccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKI---------KEMD-HFPF-----VSS-ENTLLAE 170 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~--~~~~~---------~~~~-~~~~-----~~~-~~~~~~~ 170 (501)
+.|-..-|. .+..-+++.+.||.+.+|..... ..... .+.. ..+. ... ..+.+-+
T Consensus 190 -----d~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln 262 (893)
T KOG0291|consen 190 -----DYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLN 262 (893)
T ss_pred -----cceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeec
Confidence 889888886 77888999999999999987621 10000 0000 0000 000 0011111
Q ss_pred ---cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEE
Q 010801 171 ---KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWN 245 (501)
Q Consensus 171 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd 245 (501)
..+....+.+....++.+-- +|...++.+.. ..++..+ .-...+|..++|+..|..|+.| .-|.+-+|+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFs--sG~f~LyelP~---f~lih~L-Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFS--SGEFGLYELPD---FNLIHSL-SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred ccccceeeeeccCCceEEEEEec--CCeeEEEecCC---ceEEEEe-ecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 34555556666666666553 66777777664 2333333 3345789999999999999997 568999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
..+..-.++ .++|...+++++++||| +++++|+.||.|++||.+.+-.. .+|+ .
T Consensus 337 WqsEsYVlK--------QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~----vTFt-------------e 390 (893)
T KOG0291|consen 337 WQSESYVLK--------QQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCF----VTFT-------------E 390 (893)
T ss_pred eeccceeee--------ccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEE----EEec-------------c
Confidence 985444443 68999999999999999 99999999999999999887433 3444 4
Q ss_pred cccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
|+..|+.+.|+..|+.+++.+ ||+|+.||+.. .+..+++........ .+++..|.|.++++|+.
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Qf--------------scvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQF--------------SCVAVDPSGELVCAGAQ 455 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCceee--------------eEEEEcCCCCEEEeecc
Confidence 789999999999999999886 79999999985 788888876554321 58999999999999998
Q ss_pred CC-eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC--cccccccCCCeEEEE
Q 010801 405 SN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--HELSYNLSSKLLHLA 480 (501)
Q Consensus 405 dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~--~~~~~~~~~~i~~~~ 480 (501)
|. .|++|++++| ++.-.+.+|.+||.++.|+| .+.. |++++-|.+ ++|+.-.. ..+...+...+++++
T Consensus 456 d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~--~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vs 527 (893)
T KOG0291|consen 456 DSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSP--DGSL-----LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVS 527 (893)
T ss_pred ceEEEEEEEeecC-eeeehhcCCCCcceeeEEcc--ccCe-----EEeccccceEEEEEeeccCceeeeEeeccceeEEE
Confidence 75 5999999999 55589999999999999999 5666 999999999 99944433 455667888999999
Q ss_pred EccCCCEEEEeeCC-eEEEEeC
Q 010801 481 WHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 481 ~sp~~~~la~~~~~-~~~i~~~ 501 (501)
|+|||+-||+++-| .|-+|++
T Consensus 528 frPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEh
Confidence 99999999999955 6999873
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=250.21 Aligned_cols=250 Identities=19% Similarity=0.293 Sum_probs=205.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|...|+.+..++||++.++++.|+++++||+.+++. ...|.||.
T Consensus 61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~---------------------------t~~f~GH~-------- 105 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES---------------------------TRRFVGHT-------- 105 (315)
T ss_pred ccceEecceEEccCCceEEeccccceEEEEEecCCcE---------------------------EEEEEecC--------
Confidence 5999999999999999999999999999999998854 47899999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +|+..+++|+.|++|++|++.++.......
T Consensus 106 ----~dVlsva~s--~dn~qivSGSrDkTiklwnt~g~ck~t~~~----------------------------------- 144 (315)
T KOG0279|consen 106 ----KDVLSVAFS--TDNRQIVSGSRDKTIKLWNTLGVCKYTIHE----------------------------------- 144 (315)
T ss_pred ----CceEEEEec--CCCceeecCCCcceeeeeeecccEEEEEec-----------------------------------
Confidence 889999998 899999999999999999987654322210
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
..+.+.|.|+.|+|+ ..+|+++ .|++|++||++ +.+... .+.+|
T Consensus 145 -------------------------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~-------~~~gh 191 (315)
T KOG0279|consen 145 -------------------------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRT-------TFIGH 191 (315)
T ss_pred -------------------------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhh-------ccccc
Confidence 244789999999998 6788888 99999999999 444333 37899
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
++.++.++++||| .+.++|+.||.+.+||++.++.+ ..++ |...|.+++|+|+.-+|+.+.
T Consensus 192 ~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~--------------a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 192 SGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLE--------------AFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred cccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----Eecc--------------CCCeEeeEEecCCceeEeecc
Confidence 9999999999999 99999999999999999998754 3333 357899999999998998888
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+..|+|||+.+ +..+..++....... .......| .+++|++||..|++|-.|+.|++|.+.
T Consensus 253 ~~sIkIwdl~~-~~~v~~l~~d~~g~s--~~~~~~~c----lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 ATSIKIWDLES-KAVVEELKLDGIGPS--SKAGDPIC----LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceEEEeccc-hhhhhhccccccccc--cccCCcEE----EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88899999986 777766653322110 00000111 689999999999999999999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=244.19 Aligned_cols=273 Identities=16% Similarity=0.256 Sum_probs=225.6
Q ss_pred Ccccc-ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 27 EELQD-VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 27 ~~~~h-~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..++| .+.|+.+.+.||++.||+|+. ..||+||+.++... ++.++.+|+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-------------------------Pv~t~e~h~---- 83 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-------------------------PVATFEGHT---- 83 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-------------------------ceeEEeccC----
Confidence 45667 458999999999999999885 58999999987542 778999999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|++|.|. .+|+++++|+.||+++|||++...+.+.
T Consensus 84 --------kNVtaVgF~--~dgrWMyTgseDgt~kIWdlR~~~~qR~--------------------------------- 120 (311)
T KOG0315|consen 84 --------KNVTAVGFQ--CDGRWMYTGSEDGTVKIWDLRSLSCQRN--------------------------------- 120 (311)
T ss_pred --------CceEEEEEe--ecCeEEEecCCCceEEEEeccCcccchh---------------------------------
Confidence 889999997 8999999999999999999998543332
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..|.++|+++..+|+...|++| .+|.|++||+. ...+.... ++
T Consensus 121 -----------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iP 164 (311)
T KOG0315|consen 121 -----------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IP 164 (311)
T ss_pred -----------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CC
Confidence 3667899999999999999999 99999999999 33333221 44
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
.....|.++...|+| .+++.+...|...+|++-+.... . .-.+...++.|.+.+..+.+|||+++||+
T Consensus 165 e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s-------~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----S-------ELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred CCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcc----c-------cceEhhheecccceEEEEEECCCCcEEEe
Confidence 556789999999999 99999999999999999774221 1 11223346778999999999999999998
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
++ |.+++||+++..-+....+++|...+ ++++||.||+||++|+.|+.+++|++..++. ....
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy 296 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQY 296 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccCce-eeec
Confidence 85 69999999986336677788888776 8999999999999999999999999999954 4778
Q ss_pred ecccCcccceeec
Q 010801 424 EAGKNENRKPILQ 436 (501)
Q Consensus 424 ~~~~~~v~~~~~~ 436 (501)
.+|..+..+++..
T Consensus 297 ~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 297 QGHHKAAVCVALN 309 (311)
T ss_pred CCcccccEEEEee
Confidence 8888877666553
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=286.01 Aligned_cols=266 Identities=21% Similarity=0.289 Sum_probs=219.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhcc-----cc-ccCCCCceeeEeeeccCCcchh
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM-----DF-TSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
...++|..|++|+..||.|..|-.|++|.+...+..++.+. +.+.... .. ............++-||.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~--~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~---- 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA--SDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS---- 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccch--hhhccccccccchhhhhccccCCceeEEeecCC----
Confidence 56799999999999999999999999999985443211111 1111110 00 000111222345588999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
++|....|+ |+.++|+++|.|+++|+|.+.+..+...
T Consensus 452 --------GPVyg~sFs--Pd~rfLlScSED~svRLWsl~t~s~~V~--------------------------------- 488 (707)
T KOG0263|consen 452 --------GPVYGCSFS--PDRRFLLSCSEDSSVRLWSLDTWSCLVI--------------------------------- 488 (707)
T ss_pred --------Cceeeeeec--ccccceeeccCCcceeeeecccceeEEE---------------------------------
Confidence 999999998 8899999999999999999998664433
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
| .+|..+|+++.|+|.|-+||+| .|++-++|... ...+.++ +.
T Consensus 489 ---------------------------y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRi-------fa 532 (707)
T KOG0263|consen 489 ---------------------------Y-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRI-------FA 532 (707)
T ss_pred ---------------------------e-cCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhh-------hc
Confidence 3 7999999999999999999999 99999999988 4455554 78
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|-+.|.|+.|+|+. +++++|+.|.+|++||+.++... ++|.+ |.++|.+++|||+|++|++
T Consensus 533 ghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V----RiF~G-------------H~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV----RIFTG-------------HKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred ccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE----EEecC-------------CCCceEEEEEcCCCceEee
Confidence 999999999999998 99999999999999999998754 66655 7899999999999999999
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+ |+.|.+||+.. ++++..+.+|.+.+ .++.|+.||..||+|+.|++|++||+...
T Consensus 595 g~ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDEDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 96 59999999986 89999999997665 79999999999999999999999999754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=257.92 Aligned_cols=281 Identities=17% Similarity=0.218 Sum_probs=244.3
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|..+|+.+-|.|+-..+|++++|++|++||..+++.. ..++||+
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e---------------------------~~LrGHt------- 150 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE---------------------------RSLRGHT------- 150 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhh---------------------------hhhhccc-------
Confidence 368899999999999999999999999999999988754 7899999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|.+|+|. ..|+++++++.|-.+++||.++..
T Consensus 151 -----~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~~~---------------------------------------- 183 (406)
T KOG0295|consen 151 -----DSVFDISFD--ASGKYLATCSSDLSAKLWDFDTFF---------------------------------------- 183 (406)
T ss_pred -----cceeEEEEe--cCccEEEecCCccchhheeHHHHH----------------------------------------
Confidence 889999997 789999999999999999988632
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+|++.. .+|...|.++.|-|.|.+++++ .|.+|++|++. .+-++++ +.+|.
T Consensus 184 -------------------~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t-------~~~h~ 235 (406)
T KOG0295|consen 184 -------------------RCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKT-------FPGHS 235 (406)
T ss_pred -------------------HHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEe-------ccCch
Confidence 122222 6899999999999999999999 99999999999 6667664 89999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---------
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------- 338 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--------- 338 (501)
..|..++.+.|| .++++++.|.+|++|-+.+++.. ..+ ++|..+|.+++|-|.
T Consensus 236 ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~l-------------R~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 236 EWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AEL-------------REHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred HhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----hhh-------------hccccceEEEEecccccCcchhhc
Confidence 999999999999 99999999999999999887432 222 346678888888663
Q ss_pred ------CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEE
Q 010801 339 ------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 339 ------~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iw 411 (501)
++++++++ |++|++||+.+ +.++.++.+|...+ .+++|+|.|+||+++.+|+++++|
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEE
Confidence 35788886 69999999998 99999999999987 799999999999999999999999
Q ss_pred ecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 412 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
|+++++++ +++++|...+.++.|....+ + +++|+-|.. ++|
T Consensus 362 dl~~~~cm-k~~~ah~hfvt~lDfh~~~p--~-----VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 362 DLKNLQCM-KTLEAHEHFVTSLDFHKTAP--Y-----VVTGSVDQTVKVW 403 (406)
T ss_pred Eeccceee-eccCCCcceeEEEecCCCCc--e-----EEeccccceeeee
Confidence 99999665 88999999999999987533 4 899999888 888
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=275.04 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=215.2
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
++.+++|+.++ .+|++++.. ..+.+..|-|.+++++.| ..|.+.+||+.+ ...+.. .++|.+.|+
T Consensus 393 ~~SikiWn~~t---~kciRTi~~---~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Et-------i~AHdgaIW 458 (888)
T KOG0306|consen 393 GESIKIWNRDT---LKCIRTITC---GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVET-------IRAHDGAIW 458 (888)
T ss_pred CCcEEEEEccC---cceeEEecc---ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhh-------hhcccccee
Confidence 45899999986 678887722 378899999999999999 999999999994 334432 678999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
+++.+||+ ..+++|+.|.+|++||..--.... ...+.+..+. ...-..+..|.++.+||||++|+++ -|++
T Consensus 459 si~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~------~rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 459 SISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH------TRTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred eeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeecc------ceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 99999999 999999999999999975321100 0001111100 0011225689999999999999998 4799
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
++||-+++ -+..-.+.||.-++ .++..|||+++++|||.|..|+||-++-|.+. +.+.+|.+.
T Consensus 532 VkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFGDCH-KS~fAHdDS 594 (888)
T KOG0306|consen 532 VKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-KSFFAHDDS 594 (888)
T ss_pred EEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccchhh-hhhhcccCc
Confidence 99999987 88888899999876 89999999999999999999999999999776 889999999
Q ss_pred ccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEeeC-CeEEEEe
Q 010801 430 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY 500 (501)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~~-~~~~i~~ 500 (501)
|.++.|.| ...+ +.++|.|+. +-|+-. +.+..+.+|...|.+++.+|+|.++++++. -.+.+|.
T Consensus 595 vm~V~F~P--~~~~-----FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 595 VMSVQFLP--KTHL-----FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred eeEEEEcc--ccee-----EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999 4555 899999999 999444 566778899999999999999999999995 5699985
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=269.48 Aligned_cols=374 Identities=13% Similarity=0.182 Sum_probs=285.3
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.-+.+|.|+.|||||+++|+|. .+.+.||...+... ...+.+...+++.+|-
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~-------------------~~~~pFvl~r~~~g~f-------- 145 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIK-------------------NEFNPFVLHRTYLGHF-------- 145 (893)
T ss_pred eecCccceEEECCCCcEEEEEe-cceeEEEecCcchh-------------------cccCcceEeeeecCCc--------
Confidence 3478999999999999999886 46899999765432 0234566778888998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+|.|+ .|.++|++|+.|.++++|.++..+-....... -+.+.++.+-+..+..-+++.
T Consensus 146 ----ddi~si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-----------gHkd~VvacfF~~~~~~l~tv- 207 (893)
T KOG0291|consen 146 ----DDITSIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-----------GHKDYVVACFFGANSLDLYTV- 207 (893)
T ss_pred ----cceeEEEec--cCCceEEeccccceEEEEEeccccccceEecc-----------CCCcceEEEEeccCcceEEEE-
Confidence 889999998 78899999999999999999876542222111 112233333333333333333
Q ss_pred eccCcceEEEeccCce-----------------------------ee-eeeEeecCCcccceEEEEecCCCCEEEEE-cC
Q 010801 190 WTENMATKIANVGNSV-----------------------------HA-RCQKVYPHAHDFNINSISNNSDCETFVSA-DD 238 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~-----------------------------~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d 238 (501)
..+|.+.+|..+... .. ...+.++......|++.+|++....|++| ..
T Consensus 208 -skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 208 -SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred -ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 348888888877110 00 11233445556889999999999999999 99
Q ss_pred CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-CeEEEEEccCCcccccccceeecccccC
Q 010801 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESH 317 (501)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~ 317 (501)
|...+|.+. .-.+++. +.-...+|..++|+..| ..|+.|+.. |.+.+|+.+... .+++.
T Consensus 287 G~f~LyelP-~f~lih~-------LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs------YVlKQ----- 346 (893)
T KOG0291|consen 287 GEFGLYELP-DFNLIHS-------LSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES------YVLKQ----- 346 (893)
T ss_pred CeeEEEecC-CceEEEE-------eecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc------eeeec-----
Confidence 999999998 4455543 33344678999999999 999998875 899999998764 33443
Q ss_pred CCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 318 GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 318 ~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
.+|...+++++++|||+++|+|. ||.|+|||... +-++.+|..|...+ +.++|+..|
T Consensus 347 ------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~V---------------t~v~f~~~g 404 (893)
T KOG0291|consen 347 ------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGV---------------TAVQFTARG 404 (893)
T ss_pred ------cccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCce---------------EEEEEEecC
Confidence 46788999999999999999995 59999999986 88999999999876 899999999
Q ss_pred cEEEEEeCCCeEEEEecCCCCcceEEEeccc-CcccceeeccCCccccCccceeeeecccce--eec--cccCCcccccc
Q 010801 397 LHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYN 471 (501)
Q Consensus 397 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~iw--~~~~~~~~~~~ 471 (501)
+.|++.+-||+|+.||+...+.- .++.... -...+++.-| .|.+ ++.|+.|.- .+| .+++.+-.+.+
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNf-RTft~P~p~QfscvavD~--sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNF-RTFTSPEPIQFSCVAVDP--SGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred CEEEEeecCCeEEeeeeccccee-eeecCCCceeeeEEEEcC--CCCE-----EEeeccceEEEEEEEeecCeeeehhcC
Confidence 99999999999999999876433 4444332 2334455544 5666 777777777 888 77778888889
Q ss_pred cCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 472 LSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 472 ~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
|+++|.+++|+|+++.||+++ +..+.+|+
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEE
Confidence 999999999999999999999 67799997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=260.99 Aligned_cols=332 Identities=16% Similarity=0.252 Sum_probs=260.1
Q ss_pred ccccccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+.|..+|.+.+|+|-.. .+|+|+.|-..++|++...... +.....|+. ....-+
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~---~~~q~~lrh--------------~~~~~~------- 229 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI---GSTQLVLRH--------------CIREGG------- 229 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc---cchhhhhhh--------------hhhhhc-------
Confidence 455999999999999665 8999999999999998741110 000000000 000111
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
++......|++++|+ .+|..|++|+.||.+++|+...+....
T Consensus 230 -~s~~~nkdVT~L~Wn--~~G~~LatG~~~G~~riw~~~G~l~~t----------------------------------- 271 (524)
T KOG0273|consen 230 -KSVPSNKDVTSLDWN--NDGTLLATGSEDGEARIWNKDGNLIST----------------------------------- 271 (524)
T ss_pred -ccCCccCCcceEEec--CCCCeEEEeecCcEEEEEecCchhhhh-----------------------------------
Confidence 122223779999998 899999999999999999987654221
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
+ ..|.++|.++.|+.+|.+|+++ .|+++.+||..+ +...+. +.-
T Consensus 272 --------------------------l-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q~-------f~~ 316 (524)
T KOG0273|consen 272 --------------------------L-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQQ-------FEF 316 (524)
T ss_pred --------------------------h-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEEe-------eee
Confidence 1 6899999999999999999999 999999999983 444332 566
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|..+-..|.|-.+ ..|++++.|+.|+++-+...... +. +.+|.+.|.++.|+|.|.+|+++
T Consensus 317 ~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~----~t-------------~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 317 HSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPV----KT-------------FIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred ccCCccceEEecC--ceEeecCCCceEEEEEecCCCcc----ee-------------eecccCceEEEEECCCCceEEEe
Confidence 7777678899876 57999999999999988765433 33 45588999999999999999999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC---------cEEEEEeCCCeEEEEecCC
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---------LHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------~~l~s~~~dg~i~iwd~~~ 415 (501)
+| ++++||.... ......+.+|...+ ..+.|+|+| ..|++++.|++|++||+..
T Consensus 378 SdD~TlkiWs~~~-~~~~~~l~~Hskei---------------~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQ-SNSVHDLQAHSKEI---------------YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred cCCCeeEeeecCC-Ccchhhhhhhccce---------------eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 75 9999999874 78888899998866 689999864 4799999999999999999
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC-CcccccccCCCeEEEEEccCCCEEEEee-
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN- 492 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~- 492 (501)
+.++ ..|..|..+|++++|+| ++++ +|+|+.|+. .+|+... .+.....-...|..+.|+.+|+.|.++.
T Consensus 442 gv~i-~~f~kH~~pVysvafS~--~g~y-----lAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 442 GVPI-HTLMKHQEPVYSVAFSP--NGRY-----LASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred Ccee-EeeccCCCceEEEEecC--CCcE-----EEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec
Confidence 9555 88999999999999999 8999 999999999 9995542 3344455566799999999999887665
Q ss_pred CCeEEEE
Q 010801 493 GNSLFFH 499 (501)
Q Consensus 493 ~~~~~i~ 499 (501)
++.+++.
T Consensus 514 d~~vcvl 520 (524)
T KOG0273|consen 514 DGSVCVL 520 (524)
T ss_pred CCCceEE
Confidence 4446654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=246.87 Aligned_cols=283 Identities=18% Similarity=0.312 Sum_probs=225.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|+++.|+|+|.+||+|+.|..|.+|++..... -...+++|.
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------------------------N~~~lkgHs-------- 90 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------------------------NFWVLKGHS-------- 90 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------------------------ceeeecccc--------
Confidence 5899999999999999999999999999999775433 346678999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|..+.|. +|+..+++++.|++|+.||+++|+.....
T Consensus 91 ----gAVM~l~~~--~d~s~i~S~gtDk~v~~wD~~tG~~~rk~------------------------------------ 128 (338)
T KOG0265|consen 91 ----GAVMELHGM--RDGSHILSCGTDKTVRGWDAETGKRIRKH------------------------------------ 128 (338)
T ss_pred ----ceeEeeeec--cCCCEEEEecCCceEEEEecccceeeehh------------------------------------
Confidence 999999997 89999999999999999999998855432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|..-|+++.-+.-|..+++ + +|+++++||++ .+..+++ ....
T Consensus 129 -------------------------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t--------~~~k 174 (338)
T KOG0265|consen 129 -------------------------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKT--------FENK 174 (338)
T ss_pred -------------------------ccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhc--------cccc
Confidence 688889999886666666655 6 99999999999 5555543 2235
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..++++.|...+ ..+.+|+-|+.|++||++.+... .++ .||...|+.+..+|+|.++.+-+
T Consensus 175 yqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~----~~l-------------sGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 175 YQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGL----YTL-------------SGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred eeEEEEEecccc-cceeeccccCceeeeccccCcce----EEe-------------ecccCceeeEEeccCCCccccccc
Confidence 678999999998 89999999999999999987644 344 45788999999999999999876
Q ss_pred CCcEEEEEeeC---CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 347 YMNLKLWDIRM---DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 347 ~~~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
|.++++||++. ..+++..+.+|......-. ..++|+|+++.+.+|+.|..+++||...... ...+
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl-----------L~cswsp~~~~i~ags~dr~vyvwd~~~r~~-lykl 304 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL-----------LKCSWSPNGTKITAGSADRFVYVWDTTSRRI-LYKL 304 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchhhhhhhc-----------ceeeccCCCCccccccccceEEEeecccccE-EEEc
Confidence 69999999984 1344677777665432111 5799999999999999999999999875422 2233
Q ss_pred ecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeC-CeEEE
Q 010801 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF 498 (501)
Q Consensus 424 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~-~~~~i 498 (501)
.+|...|++++|+|.+.+|.+++. ..+|+
T Consensus 305 ----------------------------------------------pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 305 ----------------------------------------------PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ----------------------------------------------CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 345557788888888888777664 44554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=261.25 Aligned_cols=281 Identities=17% Similarity=0.299 Sum_probs=231.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
..+..|++++|+.+|.+||+|+.||.++||+..+... .++..|.
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~----------------------------~tl~~Hk-------- 276 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI----------------------------STLGQHK-------- 276 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh----------------------------hhhhccC--------
Confidence 3467899999999999999999999999999876643 5788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
++|.+++|+ ..|.+|++++-|+++.+||..++.......+...+ .++..+-....+....
T Consensus 277 ----gPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------~lDVdW~~~~~F~ts~- 336 (524)
T KOG0273|consen 277 ----GPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------ALDVDWQSNDEFATSS- 336 (524)
T ss_pred ----CceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-------------ccceEEecCceEeecC-
Confidence 999999997 89999999999999999999998877765443211 1223333333333222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.++.|.++.+.. .++..++ .+|.+.|.++.|+|.|.+|+++ +|++++||... ...+.. .+..|+.
T Consensus 337 --td~~i~V~kv~~---~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~-------~l~~Hsk 402 (524)
T KOG0273|consen 337 --TDGCIHVCKVGE---DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVH-------DLQAHSK 402 (524)
T ss_pred --CCceEEEEEecC---CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchh-------hhhhhcc
Confidence 377788888875 5677887 7899999999999999999999 99999999988 444444 3789999
Q ss_pred ceEEEEEecCCC--------cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 269 VITSAEFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 269 ~v~~v~~~p~~~--------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
.|..+.|+|.|+ ..+++++.|++|++||+..+... ..+.. |..+|.+++|+|+|+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~k-------------H~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMK-------------HQEPVYSVAFSPNGR 465 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----Eeecc-------------CCCceEEEEecCCCc
Confidence 999999999762 47999999999999999988654 44433 688999999999999
Q ss_pred EEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|+|+|+ ||.|.+|++++ ++.++.+.+.... ..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 466 ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCCeeEeccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999997 69999999997 8888888766552 689999999999999999999998874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=253.04 Aligned_cols=301 Identities=17% Similarity=0.248 Sum_probs=243.2
Q ss_pred ccchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCC
Q 010801 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (501)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (501)
+.|+|+....+- .....|.+-|.|+++.|..+++++|+.|++|+|||+.+|+.
T Consensus 133 ~rPeWHapwKl~----rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----------------------- 185 (460)
T KOG0285|consen 133 PRPEWHAPWKLY----RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----------------------- 185 (460)
T ss_pred CCccccCcceeh----hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------------
Confidence 456676555332 22347999999999999999999999999999999998875
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
..++.||. ..|..++++ +--.++.+++.|+.|+.||++.++.++..
T Consensus 186 ----kltltGhi------------~~vr~vavS--~rHpYlFs~gedk~VKCwDLe~nkvIR~Y---------------- 231 (460)
T KOG0285|consen 186 ----KLTLTGHI------------ETVRGVAVS--KRHPYLFSAGEDKQVKCWDLEYNKVIRHY---------------- 231 (460)
T ss_pred ----EEeecchh------------heeeeeeec--ccCceEEEecCCCeeEEEechhhhhHHHh----------------
Confidence 37899999 889999998 45569999999999999999988755432
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
.+|-+.|.|++.+|.-..|++| +|.++++||+++
T Consensus 232 ---------------------------------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 232 ---------------------------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred ---------------------------------------------ccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 7999999999999999999999 999999999994
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
. ..+.. +.+|..+|..+.+.|-. ..+++|+.|++|++||++.++.. ..+ ..|..
T Consensus 267 r-~~V~~-------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tl-------------t~hkk 320 (460)
T KOG0285|consen 267 R-ASVHV-------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITL-------------THHKK 320 (460)
T ss_pred c-ceEEE-------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eee-------------ecccc
Confidence 4 44443 78999999999999987 78999999999999999998533 222 33678
Q ss_pred ceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 329 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.+.+++.+|....+|+++-..|+-|++.. +..++.+.+|...+ ..++...|+ ++++|+++|.+
T Consensus 321 svral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~ 383 (460)
T KOG0285|consen 321 SVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSI 383 (460)
T ss_pred eeeEEecCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEE
Confidence 89999999999999998878999999985 88888899988765 678888776 78899999999
Q ss_pred EEEecCCCCcceEEEe--------cccCcccceeeccCCccccCccceeeeecccce-eeccccCCcc
Q 010801 409 RIFSHGVGSAGGITVE--------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE 467 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~ 467 (501)
.+||.+++... +..+ .....|.+.+|.. .+.. |++|..|+. ++|.-++...
T Consensus 384 ~fwdwksg~ny-Q~~~t~vqpGSl~sEagI~as~fDk--tg~r-----lit~eadKtIk~~keDe~aT 443 (460)
T KOG0285|consen 384 MFWDWKSGHNY-QRGQTIVQPGSLESEAGIFASCFDK--TGSR-----LITGEADKTIKMYKEDEHAT 443 (460)
T ss_pred EEEecCcCccc-ccccccccCCccccccceeEEeecc--cCce-----EEeccCCcceEEEecccccC
Confidence 99999987433 2221 1233455566654 3444 788888888 8886554443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=257.43 Aligned_cols=287 Identities=16% Similarity=0.276 Sum_probs=239.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|+-+.||++|+|||+|+.|.+..||++.... ..+...++.||.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------~~kl~~tlvgh~-------- 269 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------HFKLKKTLVGHS-------- 269 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------ceeeeeeeeccc--------
Confidence 589999999999999999999999999999977442 356778899999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
.+|..|.|+ ||+++|++++.|..+++||+.+|......
T Consensus 270 ----~~V~yi~wS--PDdryLlaCg~~e~~~lwDv~tgd~~~~y------------------------------------ 307 (519)
T KOG0293|consen 270 ----QPVSYIMWS--PDDRYLLACGFDEVLSLWDVDTGDLRHLY------------------------------------ 307 (519)
T ss_pred ----CceEEEEEC--CCCCeEEecCchHheeeccCCcchhhhhc------------------------------------
Confidence 999999998 89999999999999999999998754432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC-cc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 267 (501)
..++...+.+++|.|||..+++| .|+++..||++ +. .... .++ ..
T Consensus 308 ------------------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn-~~~~-------W~gvr~ 354 (519)
T KOG0293|consen 308 ------------------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GN-ILGN-------WEGVRD 354 (519)
T ss_pred ------------------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cc-hhhc-------cccccc
Confidence 14566889999999999999999 99999999998 33 2222 122 23
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
..|.+++..+|| +.+++.+.|..|++++..+.... ..... ..+|++.+.|.|++++++. .
T Consensus 355 ~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 355 PKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred ceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEEcc
Confidence 568999999999 98988899999999998765322 23333 3589999999999999887 4
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
+..+++||++ +.+.+..+.||...... ..-||.. +..++++||+|+.|+||+..++ .+..++.+
T Consensus 416 ~qei~LWDl~-e~~lv~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsG 480 (519)
T KOG0293|consen 416 DQEIHLWDLE-ENKLVRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSG 480 (519)
T ss_pred cCeeEEeecc-hhhHHHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecC
Confidence 6999999998 58889999998875321 3456655 4589999999999999999998 55699999
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
|...|.+++++|. +..+ +|+++.||+ +||..+
T Consensus 481 Hs~~vNcVswNP~-~p~m-----~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 481 HSKTVNCVSWNPA-DPEM-----FASASDDGTIRIWGPS 513 (519)
T ss_pred CcceeeEEecCCC-CHHH-----hhccCCCCeEEEecCC
Confidence 9999999999997 6677 899999999 999655
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=263.60 Aligned_cols=275 Identities=19% Similarity=0.274 Sum_probs=232.0
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+..|..|+|. |+|+.|++|+..|.+.+|+........+
T Consensus 96 kc~V~~v~Wt--PeGRRLltgs~SGEFtLWNg~~fnFEti---------------------------------------- 133 (464)
T KOG0284|consen 96 KCPVNVVRWT--PEGRRLLTGSQSGEFTLWNGTSFNFETI---------------------------------------- 133 (464)
T ss_pred ccceeeEEEc--CCCceeEeecccccEEEecCceeeHHHH----------------------------------------
Confidence 4789999997 8999999999999999998744322111
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc-ccce
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVI 270 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v 270 (501)
+..|...|+++.|++++.++++| .+|.|++|+.+. . .++. +.+| ...|
T Consensus 134 ---------------------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-n-nVk~-------~~ahh~eaI 183 (464)
T KOG0284|consen 134 ---------------------LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-N-NVKI-------IQAHHAEAI 183 (464)
T ss_pred ---------------------hhhhcccceeEEEccCCCEEEEcCCCceEEecccch-h-hhHH-------hhHhhhhhh
Confidence 27999999999999999999999 999999999882 2 2222 3444 4899
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
++++|+|+. ..|++++.||+|+|||....+.. +++ .||.-.|.+++|+|...+|++|+ |+.
T Consensus 184 RdlafSpnD-skF~t~SdDg~ikiWdf~~~kee----~vL-------------~GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 184 RDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE----RVL-------------RGHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred heeccCCCC-ceeEEecCCCeEEEEeccCCchh----hee-------------ccCCCCcceeccCCccceeEEccCCce
Confidence 999999987 99999999999999999876432 333 45788999999999999999987 499
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
|++||.++ +.++.++.+|...+ ..+.|+|++++|+++|.|..++++|+.+.++ ..++++|+..
T Consensus 246 VKlWDprS-g~cl~tlh~HKntV---------------l~~~f~~n~N~Llt~skD~~~kv~DiR~mkE-l~~~r~Hkkd 308 (464)
T KOG0284|consen 246 VKLWDPRS-GSCLATLHGHKNTV---------------LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE-LFTYRGHKKD 308 (464)
T ss_pred eEeecCCC-cchhhhhhhccceE---------------EEEEEcCCCCeeEEccCCceEEEEehhHhHH-HHHhhcchhh
Confidence 99999997 99999999999876 7999999999999999999999999997644 4899999999
Q ss_pred ccceeeccCCccccCccceeeeecccce-eecccc--C-CcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 430 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~-~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
++++.+.|. ...+ |++|+.|+. ..|... + .......|...|.+++|||-|-+||+|+ +..+.+|.
T Consensus 309 v~~~~WhP~-~~~l-----ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 309 VTSLTWHPL-NESL-----FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred heeeccccc-cccc-----eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999997 4445 899999999 888444 2 2333457899999999999999999999 55688885
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=234.94 Aligned_cols=280 Identities=20% Similarity=0.334 Sum_probs=230.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|+++|.++.|+.||+|.++++.|.+|++|+...+. +++++.+|.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------liktYsghG-------- 59 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------LIKTYSGHG-------- 59 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccc---------------------------eeeeecCCC--------
Confidence 468999999999999999999999999999988665 458899998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|..++.+ .|+..|++++.|+.+.+||+.+|+..+..
T Consensus 60 ----~EVlD~~~s--~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~------------------------------------ 97 (307)
T KOG0316|consen 60 ----HEVLDAALS--SDNSKFASCGGDKAVQVWDVNTGKVDRRF------------------------------------ 97 (307)
T ss_pred ----ceeeecccc--ccccccccCCCCceEEEEEcccCeeeeec------------------------------------
Confidence 779999987 68889999999999999999999865533
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-eeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 267 (501)
.+|.+.|+.+.|+.+...+++| .|.++++||.++.. +++++ +....
T Consensus 98 -------------------------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-------ldea~ 145 (307)
T KOG0316|consen 98 -------------------------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-------LDEAK 145 (307)
T ss_pred -------------------------ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-------hhhhc
Confidence 7999999999999999999999 99999999988433 23333 55566
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..|.++..+. ..++.|+.||+++.||++.+++.. -+- ..+|+++.|++|+++.++++
T Consensus 146 D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----Dy~---------------g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 146 DGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----DYF---------------GHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred CceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----hhc---------------CCcceeEEecCCCCEEEEeec
Confidence 7889998875 559999999999999999986431 111 35899999999999988876
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++++++.|-.+ ++.+..+.+|.....+ ..+++......+++|++||.|++||+.....+ ..+..+
T Consensus 204 ~stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-sk~~~~ 268 (307)
T KOG0316|consen 204 DSTLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI-SKLSVV 268 (307)
T ss_pred cceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEeccceee-eeeccC
Confidence 69999999987 9999999999886543 56888888889999999999999999876322 222221
Q ss_pred cCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
... .|.+++++|...-+.++.+.+++.|+
T Consensus 269 ~~v---------------------------------------------~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 269 STV---------------------------------------------IVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred Cce---------------------------------------------eEEeeecccCccceeEecCCceecee
Confidence 111 36788888888888888887777776
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=268.00 Aligned_cols=376 Identities=15% Similarity=0.150 Sum_probs=285.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~ 107 (501)
.+..+.+++++.+||+++|++++..+.+++|++.+++.. +.+++ |+
T Consensus 59 ~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~i---------------------------rswKa~He------ 105 (775)
T KOG0319|consen 59 NEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLI---------------------------RSWKAIHE------ 105 (775)
T ss_pred ccchhhhheeeecCCccEEEEeeccceEEEEEcccchHh---------------------------HhHhhccC------
Confidence 345788999999999999999999999999999988653 66776 88
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc--cc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HG 185 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 185 (501)
++|.-++|. |.+..+++|+.|+.+++||+..+.+...+... .+-+....+.+... .+
T Consensus 106 ------~Pvi~ma~~--~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~-------------gGvVssl~F~~~~~~~lL 164 (775)
T KOG0319|consen 106 ------APVITMAFD--PTGTLLATGGADGRVKVWDIKNGYCTHSFKGH-------------GGVVSSLLFHPHWNRWLL 164 (775)
T ss_pred ------CCeEEEEEc--CCCceEEeccccceEEEEEeeCCEEEEEecCC-------------CceEEEEEeCCccchhhe
Confidence 999999997 78899999999999999999999887765432 22333344444333 34
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC---------------
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------------- 249 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~--------------- 249 (501)
+.|. .++.+++||+..... |+... ..|.+.|++++|++|+..++++ +|..+.+||+...
T Consensus 165 ~sg~--~D~~v~vwnl~~~~t--cl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v 239 (775)
T KOG0319|consen 165 ASGA--TDGTVRVWNLNDKRT--CLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV 239 (775)
T ss_pred eecC--CCceEEEEEcccCch--HHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE
Confidence 4444 489999999996433 55555 7899999999999999888887 9999999998640
Q ss_pred --------------------------------------------------------------------------------
Q 010801 250 -------------------------------------------------------------------------------- 249 (501)
Q Consensus 250 -------------------------------------------------------------------------------- 249 (501)
T Consensus 240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence
Q ss_pred -------------------------CeeeeeeecCC---CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc
Q 010801 250 -------------------------DQCFNIVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 250 -------------------------~~~~~~~~~~~---~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 301 (501)
...++.++.+. .-+.+|...|.+++...+| -+|++|+.|.++++|.+.++.
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~ 398 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNC 398 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCc
Confidence 00001111110 1235677777777755566 788888888888888874432
Q ss_pred ccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc-CCcEEEEEeeCCCCc-----ee----Eeecccc
Q 010801 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTP-----VA----TFKIHEH 370 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~-~~~i~lwd~~~~~~~-----~~----~~~~~~~ 370 (501)
....... ...+|.+.|.+++++..+ .+|++++ |.++++|++.. .+. .. +...|+.
T Consensus 399 ~~~~~~a-------------~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~~t~~aHdK 464 (775)
T KOG0319|consen 399 SKSLCVA-------------QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCRYTERAHDK 464 (775)
T ss_pred chhhhhh-------------hhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhhHHHHhhcc
Confidence 2111111 135689999999997655 4777775 69999999974 221 11 1233444
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceee
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT 450 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 450 (501)
.+ ++++++|+.+++||||.|.+.+||+++.. .+..++.+|+..++++.|++ .... ++
T Consensus 465 dI---------------N~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~--~dq~-----la 521 (775)
T KOG0319|consen 465 DI---------------NCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSK--NDQL-----LA 521 (775)
T ss_pred cc---------------cceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEecc--ccce-----eE
Confidence 33 79999999999999999999999999955 66799999999999999999 5556 89
Q ss_pred eecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEeC
Q 010801 451 RGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 451 ~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~~ 501 (501)
++|.|++ +||+.. ..+.+..+|+..|....|-.+|+.|++++.+| +.+|+.
T Consensus 522 T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 9999999 999554 45666778999999999999999999888666 899973
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=248.36 Aligned_cols=366 Identities=15% Similarity=0.207 Sum_probs=257.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|..+++...|||.|-|+|+|...|.|||||....+. .+..+++.-.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h-------------------------iLKnef~v~a-------- 103 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH-------------------------ILKNEFQVLA-------- 103 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce-------------------------eeeeeeeecc--------
Confidence 5899999999999999999999999999999876432 2445555555
Q ss_pred cccccceeEEEEeecCCCCEEEEee--CC--CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc-
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILST--ND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH- 184 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s--~d--~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (501)
++|.+|+|. .+++++++.+ .+ |.+.+||.-+ -.-.+..+ ...+..+++.++..+
T Consensus 104 ----G~I~Di~Wd--~ds~RI~avGEGrerfg~~F~~DSG~--SvGei~Gh-------------Sr~ins~~~KpsRPfR 162 (603)
T KOG0318|consen 104 ----GPIKDISWD--FDSKRIAAVGEGRERFGHVFLWDSGN--SVGEITGH-------------SRRINSVDFKPSRPFR 162 (603)
T ss_pred ----cccccceeC--CCCcEEEEEecCccceeEEEEecCCC--ccceeecc-------------ceeEeeeeccCCCceE
Confidence 899999997 7888888875 33 3455666432 11111100 112222233222221
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
++++. .++.+.+++-.- .+....+ ..|...|.|+.|+|||.+++++ .||++.+||-.++.+.-.+ ..-
T Consensus 163 i~T~s--dDn~v~ffeGPP---FKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l-----~~~ 231 (603)
T KOG0318|consen 163 IATGS--DDNTVAFFEGPP---FKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL-----EDS 231 (603)
T ss_pred EEecc--CCCeEEEeeCCC---eeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe-----cCC
Confidence 12221 255666665442 3333344 7899999999999999999998 9999999998855443331 113
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+|.+.|.+++|+||+ ..|++++.|.+++|||+.++++. +.+.. ... -......+.|- ...|+
T Consensus 232 ~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv----~t~~~-~~~---------v~dqqvG~lWq--kd~lI 294 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLV----STWPM-GST---------VEDQQVGCLWQ--KDHLI 294 (603)
T ss_pred CCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceE----EEeec-CCc---------hhceEEEEEEe--CCeEE
Confidence 5899999999999999 99999999999999999998765 44433 100 01234455565 44555
Q ss_pred EE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce--
Q 010801 344 SR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-- 420 (501)
Q Consensus 344 ~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-- 420 (501)
+- ..|.|.+++... ..++..+.+|...+ +++..+||+++|.+|+.||.|.-|+..++..-.
T Consensus 295 tVSl~G~in~ln~~d-~~~~~~i~GHnK~I---------------TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSD-PSVLKVISGHNKSI---------------TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred EEEcCcEEEEecccC-CChhheecccccce---------------eEEEEcCCCCEEEeeccCceEEEEecCCccccccc
Confidence 54 469999999985 66999999999876 899999999999999999999999986642210
Q ss_pred --------EEEecc------------------------------------------------------------------
Q 010801 421 --------ITVEAG------------------------------------------------------------------ 426 (501)
Q Consensus 421 --------~~~~~~------------------------------------------------------------------ 426 (501)
..+..+
T Consensus 359 g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~ 438 (603)
T KOG0318|consen 359 GKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS 438 (603)
T ss_pred cccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce
Confidence 000000
Q ss_pred ----cCcccceeeccCCccccCccceeeeecccce-eeccccC----CcccccccCCCeEEEEEccCCCEEEEeeC-CeE
Q 010801 427 ----KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHELSYNLSSKLLHLAWHPTTNLIACANG-NSL 496 (501)
Q Consensus 427 ----~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~----~~~~~~~~~~~i~~~~~sp~~~~la~~~~-~~~ 496 (501)
.-...+++++| ++.. .+.|+.|++ .++.+.+ ......+|..+|+++++|||+.+||++.. ..+
T Consensus 439 ~~~~~y~~s~vAv~~--~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSP--DGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred eeccccccceEEEcC--CCCE-----EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 01233445555 4555 788999999 9995553 23356789999999999999999999984 447
Q ss_pred EEEe
Q 010801 497 FFHY 500 (501)
Q Consensus 497 ~i~~ 500 (501)
.+|+
T Consensus 512 v~yd 515 (603)
T KOG0318|consen 512 VLYD 515 (603)
T ss_pred EEEE
Confidence 7775
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=261.40 Aligned_cols=267 Identities=16% Similarity=0.211 Sum_probs=227.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.++|.++.|+|...+++++-.+|.|.||+.++... .+.++--+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm---------------------------VksfeV~~------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM---------------------------VKSFEVSE------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------eeeeeecc-------
Confidence 45889999999999999999999999999999987643 24555555
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
-+|.+.+|. +..+++++|+.|..|++|+..+++.+..+
T Consensus 56 -----~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV~~F----------------------------------- 93 (794)
T KOG0276|consen 56 -----VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKVKTF----------------------------------- 93 (794)
T ss_pred -----cchhhheee--eccceEEEecCCceEEEEecccceeeEEe-----------------------------------
Confidence 778888998 56679999999999999999998755543
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..|.+-|++++.+|...+++++ +|-+|++||.+..-.+.++ +++|+
T Consensus 94 --------------------------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~ 140 (794)
T KOG0276|consen 94 --------------------------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHE 140 (794)
T ss_pred --------------------------eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcc
Confidence 7999999999999999999999 9999999999954445543 89999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--CEEEEE
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~~~ 345 (501)
..|.+++|+|...+.+++++.|++|++|.+.+.... .+ +.+|...|+++.+-+-| .+|++|
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----fT-------------l~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----FT-------------LEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----ee-------------eeccccCcceEEeccCCCcceEEec
Confidence 999999999998899999999999999999765322 23 35688999999999855 599999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+| .+|+|||.++ ..+++++.||...+ ..+.|+|.-.++++||+||+++||+..+- .+..++.
T Consensus 204 aDD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn 266 (794)
T KOG0276|consen 204 ADDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN 266 (794)
T ss_pred CCCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh
Confidence 65 9999999997 99999999999877 68999999999999999999999998876 3446777
Q ss_pred cccCcccceeeccC
Q 010801 425 AGKNENRKPILQAA 438 (501)
Q Consensus 425 ~~~~~v~~~~~~~~ 438 (501)
-.-..+++++..+.
T Consensus 267 ~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 267 YGLERVWCIAAHKG 280 (794)
T ss_pred cCCceEEEEeecCC
Confidence 77777777776553
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=239.88 Aligned_cols=332 Identities=12% Similarity=0.074 Sum_probs=261.4
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
....|++.|.+++.+|+.+++|||+.|..-.||+..+++. ...+.+|+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~---------------------------~~eltgHK----- 106 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF---------------------------AGELTGHK----- 106 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc---------------------------eeEecCCC-----
Confidence 3446999999999999999999999999999999998864 37789999
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
++|+++.|+ .+|.+|++|..+|.|+||+..++......
T Consensus 107 -------DSVt~~~Fs--hdgtlLATGdmsG~v~v~~~stg~~~~~~--------------------------------- 144 (399)
T KOG0296|consen 107 -------DSVTCCSFS--HDGTLLATGDMSGKVLVFKVSTGGEQWKL--------------------------------- 144 (399)
T ss_pred -------CceEEEEEc--cCceEEEecCCCccEEEEEcccCceEEEe---------------------------------
Confidence 999999998 89999999999999999999988755433
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
......+.-+.|+|.+..|++| .||.+.+|.+..++ ..++ +.+
T Consensus 145 ----------------------------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv-------~~G 188 (399)
T KOG0296|consen 145 ----------------------------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKV-------MSG 188 (399)
T ss_pred ----------------------------ecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeE-------ecC
Confidence 2334567778999999999999 99999999999543 3333 789
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|+.++++-.|.|+| +.++++..||+|++||+.++... ..+.. .+ .....++.++..+..++.|
T Consensus 189 h~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~-~e-----------~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQ-AE-----------GLELPCISLNLAGSTLTKG 251 (399)
T ss_pred CCCCcccccccCCC-ceEEEEecCceEEEEecCCCcee----EEecc-cc-----------cCcCCccccccccceeEec
Confidence 99999999999999 99999999999999999998644 22221 00 1356777788888888877
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+ ++.+++-+..+ ++.+....+.... +. ....+.+..+-.+.|+..=.+.|+|+-||+|.|||+... ..+...
T Consensus 252 ~~e~~~~~~~~~s-gKVv~~~n~~~~~---l~-~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c 324 (399)
T KOG0296|consen 252 NSEGVACGVNNGS-GKVVNCNNGTVPE---LK-PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHIC 324 (399)
T ss_pred cCCccEEEEcccc-ceEEEecCCCCcc---cc-ccchhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheec
Confidence 5 47777777665 6655555431100 00 001111111135666667778899999999999999855 346778
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eec--cccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.|..+|..+.|.+. .+ |.++..+|. +.| ++++.+..+.+|...|.+++.+|+++.++++++|+ ..||.
T Consensus 325 ~he~~V~~l~w~~t---~~-----l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNT---DY-----LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred cCCCceEEEEEcCc---ch-----heeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 89999999999872 23 788999999 999 77888999999999999999999999999999665 66664
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=228.95 Aligned_cols=289 Identities=17% Similarity=0.288 Sum_probs=225.7
Q ss_pred cccccceEEEEEccC-CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcchhh
Q 010801 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY 106 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~ 106 (501)
..|.+++..++|+|- |..||+++.|..|+||+...+. .+.+...+ .+|+
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk----- 61 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK----- 61 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch-----
Confidence 368999999999997 8899999999999999987432 34444444 3688
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..|.+++|+ |.|++|++||.|.++.||.-.+++..
T Consensus 62 -------rsVRsvAws--p~g~~La~aSFD~t~~Iw~k~~~efe------------------------------------ 96 (312)
T KOG0645|consen 62 -------RSVRSVAWS--PHGRYLASASFDATVVIWKKEDGEFE------------------------------------ 96 (312)
T ss_pred -------heeeeeeec--CCCcEEEEeeccceEEEeecCCCcee------------------------------------
Confidence 889999998 88999999999999999988776633
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
|..++ .+|.+.|.+++|+++|.+||++ +|+.|.||.+....+ +... .-+++
T Consensus 97 ----------------------cv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fec~----aVL~~ 148 (312)
T KOG0645|consen 97 ----------------------CVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FECI----AVLQE 148 (312)
T ss_pred ----------------------EEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EEEE----eeecc
Confidence 33334 8999999999999999999999 999999999883332 2211 13789
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|..+.|+|.. .+|++++.|++|++|+-..... ....+. +.+|.+.|.+++|+|.|..|+++
T Consensus 149 HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~ddd-W~c~~t-------------l~g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDD-WECVQT-------------LDGHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred ccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCC-eeEEEE-------------ecCccceEEEEEecCCCceEEEe
Confidence 99999999999998 9999999999999998763211 111123 34577899999999999999999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC------Cc
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG------SA 418 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~ 418 (501)
++ ++++||-..+.-. ..|...+ +.++|. ...|++++.|+.|+||.-... ..
T Consensus 214 sdD~tv~Iw~~~~~~~-----~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l 271 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTDLS-----GMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL 271 (312)
T ss_pred cCCcceEeeeeccCcc-----hhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH
Confidence 75 9999998653110 1132322 578897 458999999999999987642 11
Q ss_pred ceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 419 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
+...-.+|...|+.+.+.|... .+ |++|+.||. ++|..
T Consensus 272 ~~~~~~aHe~dVNsV~w~p~~~-~~-----L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 272 LAKKEGAHEVDVNSVQWNPKVS-NR-----LASGGDDGIVNFWEL 310 (312)
T ss_pred HHhhhcccccccceEEEcCCCC-Cc-----eeecCCCceEEEEEe
Confidence 2345568999999999999433 33 799999999 99943
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=272.29 Aligned_cols=287 Identities=22% Similarity=0.397 Sum_probs=234.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...|.++.|+++|+++++++.|+.+++|+..+++. .....+.+|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~--------- 203 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT--------- 203 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence 378899999999999999999999999999965541 1335568898
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEecc-ccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ ++++++++++.|++|++||+. .+...
T Consensus 204 ---~~v~~~~fs--~d~~~l~s~s~D~tiriwd~~~~~~~~--------------------------------------- 239 (456)
T KOG0266|consen 204 ---RGVSDVAFS--PDGSYLLSGSDDKTLRIWDLKDDGRNL--------------------------------------- 239 (456)
T ss_pred ---cceeeeEEC--CCCcEEEEecCCceEEEeeccCCCeEE---------------------------------------
Confidence 889999998 789999999999999999993 33433
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
+++ .+|...|++++|+|+++++++| .|++|+|||+++ +.+... +.+|..
T Consensus 240 ---------------------~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~-------l~~hs~ 289 (456)
T KOG0266|consen 240 ---------------------KTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRK-------LKGHSD 289 (456)
T ss_pred ---------------------EEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEe-------eeccCC
Confidence 333 7999999999999999999999 999999999994 566654 789999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc--ceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~l~~~~ 346 (501)
.|++++|++++ ++|++++.|+.|++||+.++... ..+.+.. +.. +++.+.|+|++++++++.
T Consensus 290 ~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~-------------~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 290 GISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSG-------------AENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred ceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccC-------------CCCCCceeEEEECCCCcEEEEec
Confidence 99999999999 99999999999999999998631 0022222 122 599999999999999986
Q ss_pred C-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 ~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
+ +.+++||+.. ......+.+|.... .++ .+...++.++++++|+.|+.|++|++.++ .....+.+
T Consensus 354 ~d~~~~~w~l~~-~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 354 LDRTLKLWDLRS-GKSVGTYTGHSNLV---------RCI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred CCCeEEEEEccC-CcceeeecccCCcc---------eeE---ecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 4 8999999986 88888888887742 122 35666889999999999999999999986 45588999
Q ss_pred c-cCcccceeeccCCccccCccceeeeec--ccce-eeccc
Q 010801 426 G-KNENRKPILQAAPRARRSSLSNLTRGL--YRQA-HENSS 462 (501)
Q Consensus 426 ~-~~~v~~~~~~~~~~~~~~~~~~l~~~~--~~~~-~iw~~ 462 (501)
| ...+..+.+.+. ..+ +++++ .|+. .+|..
T Consensus 420 h~~~~~~~~~~~~~--~~~-----~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 420 HSKAAVSDLSSHPT--ENL-----IASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCCCceeccccCCC--cCe-----eeecCcCCCceEEEecC
Confidence 9 888888888884 333 56666 5666 77743
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=225.62 Aligned_cols=286 Identities=15% Similarity=0.236 Sum_probs=223.8
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.+..+++|. +.|..++|+ |. |..|++++.|+.|++|+...+.-
T Consensus 6 ~~~~~~gh~------------~r~W~~awh--p~~g~ilAscg~Dk~vriw~~~~~~s---------------------- 49 (312)
T KOG0645|consen 6 LEQKLSGHK------------DRVWSVAWH--PGKGVILASCGTDKAVRIWSTSSGDS---------------------- 49 (312)
T ss_pred eEEeecCCC------------CcEEEEEec--cCCceEEEeecCCceEEEEecCCCCc----------------------
Confidence 456788999 899999998 44 77999999999999999885321
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~ 250 (501)
..|...+-.+|...|++++|+|.|++|++| .|.++.||.-....
T Consensus 50 -----------------------------------~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 50 -----------------------------------WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred -----------------------------------EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 112222326899999999999999999999 99999999766222
Q ss_pred -eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 251 -QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
+++. .+++|...|.+++|+++| ++||+++.|..|-+|.+...... ... ..+.+|...
T Consensus 95 fecv~-------~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf----ec~----------aVL~~HtqD 152 (312)
T KOG0645|consen 95 FECVA-------TLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF----ECI----------AVLQEHTQD 152 (312)
T ss_pred eeEEe-------eeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE----EEE----------eeecccccc
Confidence 3333 389999999999999999 99999999999999998855322 111 224558899
Q ss_pred eeEEEEeeCCCEEEEEc-CCcEEEEEeeC--CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~~~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
|..+.|+|...+|++++ |++|++|+-.. +-.+.+++.+|...+ .+++|++.|..|++++.|+
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV---------------W~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV---------------WSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE---------------EEEEecCCCceEEEecCCc
Confidence 99999999999999997 59999998652 235688899998755 8999999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC----Ccc-----cccccCCCe
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHE-----LSYNLSSKL 476 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~----~~~-----~~~~~~~~i 476 (501)
+|+||..-+. .-..|..+++.+.+. ++ . +++++.|+. .++.... ... ....|+..|
T Consensus 218 tv~Iw~~~~~-----~~~~~sr~~Y~v~W~---~~-~-----IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 218 TVSIWRLYTD-----LSGMHSRALYDVPWD---NG-V-----IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred ceEeeeeccC-----cchhcccceEeeeec---cc-c-----eEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 9999985432 122455667777776 12 1 899999999 9993332 111 234688899
Q ss_pred EEEEEccC-CCEEEEeeCCe-EEEEe
Q 010801 477 LHLAWHPT-TNLIACANGNS-LFFHY 500 (501)
Q Consensus 477 ~~~~~sp~-~~~la~~~~~~-~~i~~ 500 (501)
++++|+|. .+.|+++++|| +.+|.
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEE
Confidence 99999996 68899999877 66764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=254.78 Aligned_cols=287 Identities=15% Similarity=0.183 Sum_probs=237.0
Q ss_pred CccccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..-+|+..|+++.|.| .+.+|++++.|+.|+||++... .++++++.||.
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--------------------------~~~lrtf~gH~---- 258 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--------------------------RRCLRTFKGHR---- 258 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--------------------------cceehhhhcch----
Confidence 3447999999999999 8999999999999999998862 33678999999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
.+|.+++|+ ++|..|++++.|+.|++||+++|++...+
T Consensus 259 --------k~Vrd~~~s--~~g~~fLS~sfD~~lKlwDtETG~~~~~f-------------------------------- 296 (503)
T KOG0282|consen 259 --------KPVRDASFN--NCGTSFLSASFDRFLKLWDTETGQVLSRF-------------------------------- 296 (503)
T ss_pred --------hhhhhhhcc--ccCCeeeeeecceeeeeeccccceEEEEE--------------------------------
Confidence 999999998 89999999999999999999999876543
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.....++|+.|+|++ +.+++| .|+.|+.||++ .+..++ ..
T Consensus 297 ------------------------------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvq-------eY 338 (503)
T KOG0282|consen 297 ------------------------------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQ-------EY 338 (503)
T ss_pred ------------------------------ecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHH-------HH
Confidence 224567899999998 788888 99999999999 444554 26
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
..|-+.|..+.|-++| +.+++.+.|+++++|+.+..-... .... .+...+.++..+|++++++
T Consensus 339 d~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik----~i~~------------~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIK----NIAD------------PEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred HhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccch----hhcc------------hhhccCcceecCCCCCeeh
Confidence 7788999999999999 999999999999999998764431 1111 0124578899999999999
Q ss_pred EEc-CCcEEEEEeeCC--CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce
Q 010801 344 SRD-YMNLKLWDIRMD--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (501)
Q Consensus 344 ~~~-~~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (501)
+-+ ++.|.+|.+... ......+.+|...... ..+.|||||++|++|+.||.+.+||..+- .+.
T Consensus 402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-------------~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~ 467 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-------------CQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLV 467 (503)
T ss_pred hhccCceEEEEecccccccCHhhhhcceeccCce-------------eeEEEcCCCCeEEeecCCccEEEeechhh-hhh
Confidence 876 599999987532 2234567777654322 57999999999999999999999999987 556
Q ss_pred EEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 421 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 421 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
..+++|..++..+.+.|....+ +|+++-+|. ++|
T Consensus 468 ~~lkah~~~ci~v~wHP~e~Sk------vat~~w~G~Ikiw 502 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEPSK------VATCGWDGLIKIW 502 (503)
T ss_pred hccccCCcceEEEEecCCCcce------eEecccCceeEec
Confidence 9999999999999999975554 689999998 888
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=263.35 Aligned_cols=271 Identities=15% Similarity=0.241 Sum_probs=212.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..++|..|+ +++.+||.|-.|..|++|.+...+++.......... ... . ..+
T Consensus 379 ~~v~ca~fS--ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~---------------~d~---------~--sad 430 (707)
T KOG0263|consen 379 QGVTCAEFS--DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSN---------------IDT---------E--SAD 430 (707)
T ss_pred CcceeEeec--CCcchhhccccccEEEEEecchhhhccccchhhhcc---------------ccc---------c--ccc
Confidence 679999998 788888888899999999998765444321110000 000 0 000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
-...+.|... ....+.+ .+|.++|..+.|+|+.++|+++ .|+++++|.+.+.. ++-. ..+|..+|+.
T Consensus 431 ~~~~~~D~~~---~~~~~~L-~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~-------y~GH~~PVwd 498 (707)
T KOG0263|consen 431 VDVDMLDDDS---SGTSRTL-YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVI-------YKGHLAPVWD 498 (707)
T ss_pred hhhhhccccC---CceeEEe-ecCCCceeeeeecccccceeeccCCcceeeeecccce-eEEE-------ecCCCcceee
Confidence 0111222221 1222223 7999999999999999999999 99999999999444 3332 6799999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|+|.| .+||+++.|++-++|........ +++.+ |-+.|.++.|+|++.|+++|+ |.++|
T Consensus 499 V~F~P~G-yYFatas~D~tArLWs~d~~~Pl----Rifag-------------hlsDV~cv~FHPNs~Y~aTGSsD~tVR 560 (707)
T KOG0263|consen 499 VQFAPRG-YYFATASHDQTARLWSTDHNKPL----RIFAG-------------HLSDVDCVSFHPNSNYVATGSSDRTVR 560 (707)
T ss_pred EEecCCc-eEEEecCCCceeeeeecccCCch----hhhcc-------------cccccceEEECCcccccccCCCCceEE
Confidence 9999999 99999999999999998764433 55554 778999999999999999996 69999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
+||+.+ +..++.|.||...+ ++++|||+|++|++|+.||.|.|||+.++ .+...+.+|.+.+.
T Consensus 561 lWDv~~-G~~VRiF~GH~~~V---------------~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 561 LWDVST-GNSVRIFTGHKGPV---------------TALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIY 623 (707)
T ss_pred EEEcCC-CcEEEEecCCCCce---------------EEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCcee
Confidence 999997 89999999999987 89999999999999999999999999998 44588888888888
Q ss_pred ceeeccCCccccCccceeeeecccce-eeccccCCc
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH 466 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~ 466 (501)
++.|+. +|.+ ||+|+.|.. .+|+.....
T Consensus 624 SlsFS~--dg~v-----Lasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 624 SLSFSR--DGNV-----LASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEec--CCCE-----EEecCCCCeEEEEEchhhc
Confidence 888877 7777 888888888 888555333
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=253.11 Aligned_cols=363 Identities=14% Similarity=0.156 Sum_probs=283.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|+|++-+|+.-.||+|..||.|+||+..+++ ...++.||.
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~---------------------------~~~tfngHK---------- 107 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE---------------------------ILITFNGHK---------- 107 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCc---------------------------eeeeecccc----------
Confidence 4689999999999999999999999999988664 347899999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|+.+.|. ..|.+|++||.|+.|.+||+-...-...... +...+....+.....++.+.+.
T Consensus 108 --~AVt~l~fd--~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G-------------Hkd~iT~~~F~~~~~~lvS~sK- 169 (888)
T KOG0306|consen 108 --AAVTTLKFD--KIGTRLASGSKDTDIIVWDLVGEEGLFRLRG-------------HKDSITQALFLNGDSFLVSVSK- 169 (888)
T ss_pred --cceEEEEEc--ccCceEeecCCCccEEEEEeccceeeEEeec-------------chHHHhHHhccCCCeEEEEecc-
Confidence 999999997 8899999999999999999976543322211 2344555555555555555543
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC----------------------
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI---------------------- 248 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~---------------------- 248 (501)
++.|++||++. ..|..+. ..|.+.++.+++.+ +.++++ .|+.+++|++..
T Consensus 170 -Ds~iK~WdL~t---qhCf~Th-vd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 170 -DSMIKFWDLET---QHCFETH-VDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred -CceEEEEeccc---ceeeeEE-ecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 89999999997 5677776 78999999999987 677777 999999999821
Q ss_pred --------------------------------------------------------------------------------
Q 010801 249 -------------------------------------------------------------------------------- 248 (501)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (501)
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence
Q ss_pred ---------CCee------------eeeeec--CC---------CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 249 ---------SDQC------------FNIVDM--KP---------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 249 ---------~~~~------------~~~~~~--~~---------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
++.. +..+.. +. ..+.+|...|++++++.+. ..+++ +..+.+++|+
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~S-ga~~SikiWn 400 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLAS-GAGESIKIWN 400 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeee-cCCCcEEEEE
Confidence 0000 000000 00 1346788999999999886 44544 4567899999
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
..+.+.. ++++. +.+.+..|-|.+++++.|.. |.+.+||+.. ...+.++++|.+.+
T Consensus 401 ~~t~kci----RTi~~---------------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaI--- 457 (888)
T KOG0306|consen 401 RDTLKCI----RTITC---------------GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAI--- 457 (888)
T ss_pred ccCccee----EEecc---------------ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhccccce---
Confidence 9987655 66665 57899999999999999976 9999999986 88888899999876
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc----ceEEE-------ecccCcccceeeccCCccccC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----GGITV-------EAGKNENRKPILQAAPRARRS 444 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~-------~~~~~~v~~~~~~~~~~~~~~ 444 (501)
++++.+||++.+++||.|.+|++||..--.. ..+.+ -.-.+.+.++.++| ++++
T Consensus 458 ------------Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp--dgk~- 522 (888)
T KOG0306|consen 458 ------------WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP--DGKL- 522 (888)
T ss_pred ------------eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC--CCcE-
Confidence 8999999999999999999999999742111 10111 12345778888988 8999
Q ss_pred ccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 445 SLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 445 ~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
||.+--|.+ +++-.+ .....+.+|.-+|.+|..|||++.|++|+ +.++.||.
T Consensus 523 ----LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 523 ----LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred ----EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 999999999 999444 45566789999999999999999999999 66799995
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=277.53 Aligned_cols=302 Identities=21% Similarity=0.288 Sum_probs=221.2
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...|.+.|.+++|+|+|++||+|+.|+.|+||+....... + .....+...+.+ .
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----------~--------~~~~~~~~~~~~-~------ 532 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----------G--------RDIHYPVVELAS-R------ 532 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----------c--------cccccceEEecc-c------
Confidence 3458999999999999999999999999999997642110 0 000001122222 2
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.+++|++ +++.+|++++.||+|++||+.+++.....
T Consensus 533 ------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~~---------------------------------- 571 (793)
T PLN00181 533 ------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTEM---------------------------------- 571 (793)
T ss_pred ------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEEe----------------------------------
Confidence 5689999984 45789999999999999999876543322
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+|...|++++|+| ++.+|++| .|++|++||++. +..+.. +.
T Consensus 572 ---------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~-------~~- 615 (793)
T PLN00181 572 ---------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGT-------IK- 615 (793)
T ss_pred ---------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEE-------Ee-
Confidence 68999999999996 78899999 999999999984 444443 22
Q ss_pred cccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+...+.++.|++ ++ .+|++|+.||.|++||+++.+... ..+ .+|...|..+.|. ++.+|++
T Consensus 616 ~~~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~~---~~~-------------~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 616 TKANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLPL---CTM-------------IGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred cCCCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCccc---eEe-------------cCCCCCEEEEEEe-CCCEEEE
Confidence 235789999965 56 999999999999999998753211 222 3477899999997 6778887
Q ss_pred Ec-CCcEEEEEeeCC-----CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 345 RD-YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++ |++|++||++.. .+++..+.+|...+ ..++|+|++++|++|+.|+.|++|+......
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 75 699999999741 35677888887654 6899999999999999999999999875522
Q ss_pred ceEEEe-cccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-E
Q 010801 419 GGITVE-AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-L 496 (501)
Q Consensus 419 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~ 496 (501)
. ..+. .+...+.. .....+...|.+++|+|++..|++|+.++ +
T Consensus 743 ~-~s~~~~~~~~~~~----------------------------------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 743 V-LSYKFKTIDPVSG----------------------------------LEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred e-EEEecccCCcccc----------------------------------cccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 2 1110 00000000 00123445799999999999999998554 9
Q ss_pred EEEe
Q 010801 497 FFHY 500 (501)
Q Consensus 497 ~i~~ 500 (501)
.||.
T Consensus 788 ~i~~ 791 (793)
T PLN00181 788 KILE 791 (793)
T ss_pred EEEe
Confidence 9986
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=247.11 Aligned_cols=279 Identities=23% Similarity=0.390 Sum_probs=230.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.++|++++|+|++++|++++.||.|++|++.+++. ...+.+|.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------------~~~~~~~~-------- 51 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------------LRTLKGHT-------- 51 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------------EEEEecCC--------
Confidence 5889999999999999999999999999999986643 35567787
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..+..+.|+ ++++++++++.|+.|++|++.+++.....
T Consensus 52 ----~~i~~~~~~--~~~~~l~~~~~~~~i~i~~~~~~~~~~~~------------------------------------ 89 (289)
T cd00200 52 ----GPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGECVRTL------------------------------------ 89 (289)
T ss_pred ----cceeEEEEC--CCCCEEEEEcCCCeEEEEEcCcccceEEE------------------------------------
Confidence 778999998 67789999999999999999876433221
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..|...+.++.|++++++++++ .++.|.+||+.. .+.... +..|..
T Consensus 90 -------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~-------~~~~~~ 136 (289)
T cd00200 90 -------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTT-------LRGHTD 136 (289)
T ss_pred -------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEE-------eccCCC
Confidence 4677789999999998888888 699999999983 344332 457888
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.+.+++|+|++ .++++++.|+.|++||+++++.. ..+.. |...+.++.|+|+++.+++++ +
T Consensus 137 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 137 WVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCV----ATLTG-------------HTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred cEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccc----eeEec-------------CccccceEEECCCcCEEEEecCC
Confidence 99999999997 88888888999999999876543 33333 456899999999998888775 6
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||++. ++.+..+..+...+ .+++|+|++.++++++.||.|++|++.+++ ....+..|.
T Consensus 199 ~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~ 261 (289)
T cd00200 199 GTIKLWDLST-GKCLGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGHT 261 (289)
T ss_pred CcEEEEECCC-CceecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCce-eEEEccccC
Confidence 9999999985 77777776666544 789999999999999889999999998774 447777999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eec
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
..+..+.+.+ ++.. +++++.++. .+|
T Consensus 262 ~~i~~~~~~~--~~~~-----l~~~~~d~~i~iw 288 (289)
T cd00200 262 NSVTSLAWSP--DGKR-----LASGSADGTIRIW 288 (289)
T ss_pred CcEEEEEECC--CCCE-----EEEecCCCeEEec
Confidence 9999999998 5566 899999988 888
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=236.95 Aligned_cols=305 Identities=17% Similarity=0.249 Sum_probs=240.2
Q ss_pred hhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEe
Q 010801 16 CSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKT 95 (501)
Q Consensus 16 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (501)
+-+.+--+.+...+.|.+-|+++... +++|++|++||.++|||..+. ...
T Consensus 89 Yv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----------------------------~~~ 138 (423)
T KOG0313|consen 89 YVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----------------------------SIK 138 (423)
T ss_pred EEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc----------------------------eEE
Confidence 33444555566667899999999988 889999999999999998755 447
Q ss_pred eeccCCcchhhccccccccceeEEEEee-cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 96 EFQSHEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~-~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
++.||. ++|.+++|.. ++....|++++.|.++++|.++.++.....
T Consensus 139 ~~~Ght------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~--------------------- 185 (423)
T KOG0313|consen 139 TIVGHT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA--------------------- 185 (423)
T ss_pred EEecCC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH---------------------
Confidence 889999 9999998872 233456999999999999999876533211
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-ee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~ 252 (501)
...- .||...|-+++..++|..+++| .|..|+||+..... ..
T Consensus 186 -----------------------------------~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 186 -----------------------------------LKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred -----------------------------------HhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCcccc
Confidence 0000 4999999999999999999999 99999999933210 00
Q ss_pred eeee----------------ecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccccc
Q 010801 253 FNIV----------------DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (501)
Q Consensus 253 ~~~~----------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 316 (501)
+... ......+.+|..+|.++.|++. ..+++++.|.+|+.||+.++.... ....
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~----~~~~---- 299 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS----TLTT---- 299 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee----eeec----
Confidence 0000 0011246899999999999984 689999999999999999987652 2222
Q ss_pred CCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCC--ceeEeeccccccccccccCCCCCcceeeEEEEc
Q 010801 317 HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (501)
Q Consensus 317 ~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 393 (501)
...+.++.++|..++|++|+ |..|++||.++... ..+++.+|...+ .++.|+
T Consensus 300 ----------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkws 354 (423)
T KOG0313|consen 300 ----------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWS 354 (423)
T ss_pred ----------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheecC
Confidence 35799999999999999985 69999999987433 456788999887 689999
Q ss_pred CCCc-EEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 394 GDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 394 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
|... +|++|+.|+++++||+.+.+.....+.+|.+.|.++.+.. +.. +++|+.|++ +++..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~---~~~-----IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE---GGL-----IVSGGADNKLRIFKG 417 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC---Cce-----EEeccCcceEEEecc
Confidence 9654 6789999999999999998767799999999999999974 444 899999999 88743
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=259.97 Aligned_cols=281 Identities=21% Similarity=0.306 Sum_probs=229.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.++.|+ ++|..+++++.|+.+++|+....+. .
T Consensus 160 ~sv~~~~fs--~~g~~l~~~~~~~~i~~~~~~~~~~-~------------------------------------------ 194 (456)
T KOG0266|consen 160 PSVTCVDFS--PDGRALAAASSDGLIRIWKLEGIKS-N------------------------------------------ 194 (456)
T ss_pred CceEEEEEc--CCCCeEEEccCCCcEEEeecccccc-h------------------------------------------
Confidence 789999998 8999999999999999999965541 0
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
..+.+ .+|...|.+++|+|++++++++ .|++|++||+...+..+++ +.+|...|++
T Consensus 195 ---------------~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~-------l~gH~~~v~~ 251 (456)
T KOG0266|consen 195 ---------------LLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT-------LKGHSTYVTS 251 (456)
T ss_pred ---------------hhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE-------ecCCCCceEE
Confidence 11111 5899999999999999999999 9999999999646566665 7899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|+|++ +++++|+.|++|++||+++++.. +.+. +|...|++++|++++.+|++++ |+.|+
T Consensus 252 ~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~----~~l~-------------~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 252 VAFSPDG-NLLVSGSDDGTVRIWDVRTGECV----RKLK-------------GHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred EEecCCC-CEEEEecCCCcEEEEeccCCeEE----Eeee-------------ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 9999999 99999999999999999997544 4444 4788999999999999999986 69999
Q ss_pred EEEeeCCCC--ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 352 LWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 352 lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
+||+.+ +. +...+..+.... .++.++|+|++++|+++..|+.+++||+..+.. ...+.+|...
T Consensus 314 vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-~~~~~~~~~~ 378 (456)
T KOG0266|consen 314 VWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-VGTYTGHSNL 378 (456)
T ss_pred EEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc-eeeecccCCc
Confidence 999986 55 456666665541 127899999999999999999999999998844 4788888876
Q ss_pred ccce-eeccCCccccCccceeeeecccce-eecccc--CCccccccc-CCCeEEEEEccCCCEEEEee---CCeEEEEe
Q 010801 430 NRKP-ILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNL-SSKLLHLAWHPTTNLIACAN---GNSLFFHY 500 (501)
Q Consensus 430 v~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~-~~~i~~~~~sp~~~~la~~~---~~~~~i~~ 500 (501)
+.+. .......+++ +.+|+.|+. .+|+.. ..+....+| ...+..++|+|..+++++++ +..+.+|.
T Consensus 379 ~~~~~~~~~~~~~~~-----i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKL-----IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ceeEecccccCCCCe-----EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 4222 1111236666 999999999 999444 556667788 88999999999999999998 45577774
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=235.72 Aligned_cols=275 Identities=14% Similarity=0.209 Sum_probs=236.7
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.+|+.+-|+ |+-..+++++.|.+|++||..++++....
T Consensus 109 ~~vt~v~~h--p~~~~v~~as~d~tikv~D~~tg~~e~~L---------------------------------------- 146 (406)
T KOG0295|consen 109 SSVTRVIFH--PSEALVVSASEDATIKVFDTETGELERSL---------------------------------------- 146 (406)
T ss_pred cceeeeeec--cCceEEEEecCCceEEEEEccchhhhhhh----------------------------------------
Confidence 889999997 67778888999999999999998864332
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|.+.+.+++|+..|++++++ .|-.+++||.....++++. +.+|...|.+
T Consensus 147 ---------------------rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks-------~~gh~h~vS~ 198 (406)
T KOG0295|consen 147 ---------------------RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS-------LIGHEHGVSS 198 (406)
T ss_pred ---------------------hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH-------hcCcccceee
Confidence 7999999999999999999999 8888999999954555553 6789999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|-|.| .++++++.|.+|+.|++.++-.. +++.+ |..+|..+..+.||.++|+++ |.+|+
T Consensus 199 V~f~P~g-d~ilS~srD~tik~We~~tg~cv----~t~~~-------------h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 199 VFFLPLG-DHILSCSRDNTIKAWECDTGYCV----KTFPG-------------HSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred EEEEecC-CeeeecccccceeEEecccceeE----EeccC-------------chHhEEEEEecCCeeEEEecCCCceEE
Confidence 9999999 99999999999999999998654 45544 678999999999999999986 59999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC---------------CcEEEEEeCCCeEEEEecCCC
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---------------GLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------------~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+|-+.+ +++...+..|+.++ -+++|.|. +.++.+++.|++|++||+.++
T Consensus 261 vW~~~t-~~~k~~lR~hEh~v---------------Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 261 VWVVAT-KQCKAELREHEHPV---------------ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred EEEecc-chhhhhhhccccce---------------EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 999986 77788888888876 45666542 358999999999999999999
Q ss_pred CcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEee-
Q 010801 417 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN- 492 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~- 492 (501)
.++ .++.+|.++|+.++|+| .|++ |+++..|+. ++|+.. +.......|+.-|++++|+.+..++++|+
T Consensus 325 ~cL-~tL~ghdnwVr~~af~p--~Gky-----i~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 325 MCL-FTLVGHDNWVRGVAFSP--GGKY-----ILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred eEE-EEEecccceeeeeEEcC--CCeE-----EEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence 655 99999999999999999 7899 999999999 999444 45555668899999999999999999999
Q ss_pred CCeEEEEe
Q 010801 493 GNSLFFHY 500 (501)
Q Consensus 493 ~~~~~i~~ 500 (501)
+-...+|.
T Consensus 397 dqt~KvwE 404 (406)
T KOG0295|consen 397 DQTVKVWE 404 (406)
T ss_pred cceeeeee
Confidence 44577774
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=258.74 Aligned_cols=276 Identities=20% Similarity=0.328 Sum_probs=206.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCC-----------------------cc--chhhhh------h
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN-----------------------QH--ISRSEL------E 78 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~-----------------------~~--~~~~~~------~ 78 (501)
.|.+.|.++.||+||+|||+|+.||.|+||.+...+.... .. ...+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6999999999999999999999999999999886222100 00 000000 0
Q ss_pred hccc--cccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccC
Q 010801 79 KQMD--FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (501)
Q Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~ 156 (501)
.... ....+.-..+++..+.||. +.|.+|.|+ ..++|++++.|++||||++...++.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~----- 404 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLK----- 404 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheecccc---cCCeeEeccccccEEeecCCCcceee-----
Confidence 0000 0011111345667889999 889999997 56899999999999999998766444
Q ss_pred CCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEE
Q 010801 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS 235 (501)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~ 235 (501)
.| .|.+.|+|++|+| |.++|++
T Consensus 405 -------------------------------------------------------~F--~HndfVTcVaFnPvDDryFiS 427 (712)
T KOG0283|consen 405 -------------------------------------------------------VF--SHNDFVTCVAFNPVDDRYFIS 427 (712)
T ss_pred -------------------------------------------------------EE--ecCCeeEEEEecccCCCcEee
Confidence 33 8999999999999 7889999
Q ss_pred E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc
Q 010801 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (501)
Q Consensus 236 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 314 (501)
| -|+.|+||++. ..+... ......-|++++|.|+| +..++|+.+|.+++|+....++.. .+..+.
T Consensus 428 GSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~----~~~I~~ 493 (712)
T KOG0283|consen 428 GSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS----DFHIRL 493 (712)
T ss_pred cccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE----eeeEee
Confidence 9 99999999998 454443 23344789999999999 999999999999999998875442 111100
Q ss_pred ccCCCcceeeecccceeEEEEeeCC--CEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 315 ESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 315 ~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
... . -..|. .|+.+.|.|.. +.|++..|..|||||.+. ..++..+++....... ....|
T Consensus 494 ~~~---K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asf 554 (712)
T KOG0283|consen 494 HNK---K-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASF 554 (712)
T ss_pred ccC---c-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeE
Confidence 000 0 01123 79999999854 377787889999999985 8888899887765432 57899
Q ss_pred cCCCcEEEEEeCCCeEEEEecCC
Q 010801 393 SGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+.||++|+++++|..|+||+++.
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCC
Confidence 99999999999999999999843
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=243.37 Aligned_cols=309 Identities=20% Similarity=0.324 Sum_probs=226.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|+..|+++++.|.|..+++|+.|.+|++||+.+.... .+.++.+.--..|.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--------------------~~~fr~l~P~E~h~-------- 216 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--------------------MRSFRQLQPCETHQ-------- 216 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEeccccccc--------------------chhhhccCcccccc--------
Confidence 36788999999999999999999999999999876431 11222222233444
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
|++++|+ +.|..|++.+.....+|+|..+.+.....+
T Consensus 217 ------i~sl~ys--~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K----------------------------------- 253 (641)
T KOG0772|consen 217 ------INSLQYS--VTGDQILVVSGSAQAKLLDRDGFEIVEFSK----------------------------------- 253 (641)
T ss_pred ------cceeeec--CCCCeEEEEecCcceeEEccCCceeeeeec-----------------------------------
Confidence 9999998 688899988888999999988776655442
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
|.-.+-|+.. ..+|...++|.+|+|+.+ .++++ .||+++|||++..+...+++..++ ..+..
T Consensus 254 ----GDQYI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--~~g~R 317 (641)
T KOG0772|consen 254 ----GDQYIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--AGGKR 317 (641)
T ss_pred ----cchhhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--CCCcc
Confidence 2222333322 179999999999999754 55666 999999999997766666654442 33556
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc--ceeEEEEeeCCCEEEEE
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~l~~~ 345 (501)
-+++.++|+|+| ++||.|+.||.|.+|+.+...... ...+-. .|.. .|+++.||+||++|++.
T Consensus 318 v~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p-~~~vk~-------------AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 318 VPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRP-VMKVKD-------------AHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred cCceeeecCCCc-chhhhcccCCceeeeecCCccccc-ceEeee-------------ccCCCCceeEEEeccccchhhhc
Confidence 678999999999 999999999999999986542210 111212 2444 89999999999999997
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC------CCeEEEEecCCCCc
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVGSA 418 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~ 418 (501)
+ |+++++||++...+++....+....-+. +.++|||+.++|++|.. .|.+.+||..+.+.
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~-------------tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPG-------------TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCCC-------------CccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 5 6999999999878888877766543322 68999999999999875 46788888776533
Q ss_pred ceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCC-eEE
Q 010801 419 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLF 497 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~ 497 (501)
+ ..+ -++ ...|..+.|||.-+.|.+++.| +++
T Consensus 450 v-~ki----------~i~------------------------------------~aSvv~~~WhpkLNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 450 V-YKI----------DIS------------------------------------TASVVRCLWHPKLNQIFAGSGDGTAH 482 (641)
T ss_pred E-EEe----------cCC------------------------------------CceEEEEeecchhhheeeecCCCceE
Confidence 2 111 111 2266788899998887777754 477
Q ss_pred EEe
Q 010801 498 FHY 500 (501)
Q Consensus 498 i~~ 500 (501)
+||
T Consensus 483 vyY 485 (641)
T KOG0772|consen 483 VYY 485 (641)
T ss_pred EEE
Confidence 776
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=237.66 Aligned_cols=233 Identities=13% Similarity=0.274 Sum_probs=194.7
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
....|+|+.+. ...+++|..|++|+|||..+-+ +...+.||+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHt--------- 237 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHT--------- 237 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------------HHHhhhcCC---------
Confidence 35789999985 4468999999999999987544 447899999
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
++|.|+.|. .+.+++|+.|.+|++||++++++.++.
T Consensus 238 ---GSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tl------------------------------------- 273 (499)
T KOG0281|consen 238 ---GSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTL------------------------------------- 273 (499)
T ss_pred ---CcEEeeecc----ceEEEecCCCceEEEEeccCCchhhHH-------------------------------------
Confidence 999999984 569999999999999999998865543
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+|...|..+.|+ ..+++++ .|.++.+||+...... .. ...+.+|...
T Consensus 274 ------------------------ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i-t~----rrVLvGHrAa 322 (499)
T KOG0281|consen 274 ------------------------IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI-TL----RRVLVGHRAA 322 (499)
T ss_pred ------------------------hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH-HH----HHHHhhhhhh
Confidence 6889999999997 3488888 9999999999854421 10 0126799999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|+.+.|+. +++++++.|.+|++|++.+.+.. +++.+ |...|.++.+. |+++++|+ |.
T Consensus 323 VNvVdfd~---kyIVsASgDRTikvW~~st~efv----Rtl~g-------------HkRGIAClQYr--~rlvVSGSSDn 380 (499)
T KOG0281|consen 323 VNVVDFDD---KYIVSASGDRTIKVWSTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSDN 380 (499)
T ss_pred eeeecccc---ceEEEecCCceEEEEeccceeee----hhhhc-------------ccccceehhcc--CeEEEecCCCc
Confidence 99999873 78999999999999999998654 44444 77889888875 89999995 69
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+|++||+.. +.+++.++||+..+ .++.| |.+.+++|..||+|+|||+..+
T Consensus 381 tIRlwdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 381 TIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred eEEEEeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEecccc
Confidence 999999996 99999999999987 67888 6778999999999999999876
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=254.12 Aligned_cols=296 Identities=16% Similarity=0.211 Sum_probs=239.5
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
+.+|..++|+|...++.++-..|.|++||..-+.++ ..|..|+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli---------------------------~rFdeHd---------- 51 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI---------------------------DRFDEHD---------- 51 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHH---------------------------hhhhccC----------
Confidence 578999999999999999999999999999876543 6688898
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
++|..|+|+ |.+.+|++|+.|-.|++|+..+.++....
T Consensus 52 --GpVRgv~FH--~~qplFVSGGDDykIkVWnYk~rrclftL-------------------------------------- 89 (1202)
T KOG0292|consen 52 --GPVRGVDFH--PTQPLFVSGGDDYKIKVWNYKTRRCLFTL-------------------------------------- 89 (1202)
T ss_pred --Cccceeeec--CCCCeEEecCCccEEEEEecccceehhhh--------------------------------------
Confidence 999999998 77889999999999999999987755433
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+|-+-|+.+.|++.-..++++ +|.+|+||+.. .+.++.+ +.+|...|
T Consensus 90 -----------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iav-------ltGHnHYV 138 (1202)
T KOG0292|consen 90 -----------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAV-------LTGHNHYV 138 (1202)
T ss_pred -----------------------ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEE-------EecCceEE
Confidence 7999999999999999999999 99999999999 6667765 79999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce----eecccc--------cCCCcceeeecccceeEEEEeeC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI----LRDAAE--------SHGSKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~--------~~~~~~~~~~h~~~i~~~~~sp~ 338 (501)
.|..|+|.. .+++++|.|-+||+||+..-+........ +.++.. .-.....+.||...|+.++|+|.
T Consensus 139 McAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 139 MCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 999999987 99999999999999999764322111010 000000 00112246899999999999999
Q ss_pred CCEEEEEcC-CcEEEEEeeCCCC--ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 339 GQHLLSRDY-MNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 339 ~~~l~~~~~-~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
-.+|++|+| ..|++|.... .+ .+.+..+|.+.+ .++-|+|...++++.|+|++|+|||+..
T Consensus 218 lpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cceEEecCCcceeeEEEecc-ccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEeccc
Confidence 999999975 9999999863 44 345678898877 7899999999999999999999999986
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
... .+++....+..+.++..|. .. |..++.|+. .++...
T Consensus 282 Rt~-v~tfrrendRFW~laahP~--lN------LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 282 RTS-VQTFRRENDRFWILAAHPE--LN------LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred ccc-eeeeeccCCeEEEEEecCC--cc------eeeeecCCceEEEEEc
Confidence 644 5888888888899999884 22 444444544 777443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=233.96 Aligned_cols=292 Identities=15% Similarity=0.219 Sum_probs=235.6
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+.+-|..|||||+||++|+.||.|-||++.+|+.. ..| .|.....|.-|+
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr-------KDL------------kYQAqd~fMMmd--------- 263 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-------KDL------------KYQAQDNFMMMD--------- 263 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhh-------hhh------------hhhhhcceeecc---------
Confidence 3567899999999999999999999999999998752 111 222223344455
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
++|.|+.|+ .|..++++|+.||.|++|.+++|.+.+
T Consensus 264 ---~aVlci~FS--RDsEMlAsGsqDGkIKvWri~tG~ClR--------------------------------------- 299 (508)
T KOG0275|consen 264 ---DAVLCISFS--RDSEMLASGSQDGKIKVWRIETGQCLR--------------------------------------- 299 (508)
T ss_pred ---cceEEEeec--ccHHHhhccCcCCcEEEEEEecchHHH---------------------------------------
Confidence 899999998 788999999999999999999987544
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.|-..|...|+|+.|+.|+..++++ .|.++++--+. .+++++ .+.+|...
T Consensus 300 ---------------------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LK-------EfrGHsSy 350 (508)
T KOG0275|consen 300 ---------------------RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLK-------EFRGHSSY 350 (508)
T ss_pred ---------------------HhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHH-------HhcCcccc
Confidence 3335899999999999999999998 99999999999 555655 48999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc-C
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-Y 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~-~ 347 (501)
|+...|.++| ..+++++.||+|++|+..+.+.. .+|.. .+...+|+++..-|.+ ..++++. .
T Consensus 351 vn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 351 VNEATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred ccceEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcCC
Confidence 9999999999 99999999999999999988654 33333 1124578888888754 4555554 4
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
++|++.++. ++.++.+......... ..+.+.+|.|.++.+.++|+.++.|.+.+| .+..++..|.
T Consensus 415 ntv~imn~q--GQvVrsfsSGkREgGd------------Fi~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhE 479 (508)
T KOG0275|consen 415 NTVYIMNMQ--GQVVRSFSSGKREGGD------------FINAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHE 479 (508)
T ss_pred CeEEEEecc--ceEEeeeccCCccCCc------------eEEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeeccc
Confidence 999999986 8888888654332211 157899999999999999999999999998 5669999999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
..+..++-.|- -.+ +|+=+.|+. ++|.
T Consensus 480 kdvIGl~HHPH--qNl-----lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 KDVIGLTHHPH--QNL-----LASYSEDGLLKLWK 507 (508)
T ss_pred ccccccccCcc--cch-----hhhhcccchhhhcC
Confidence 99999988884 233 788888888 8884
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=244.01 Aligned_cols=289 Identities=21% Similarity=0.342 Sum_probs=230.9
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
.+..+.||+ ..|+++.|.| ..+.+|++++.|+.|+||++.+.
T Consensus 206 ~~~~~~gH~------------kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~------------------------- 247 (503)
T KOG0282|consen 206 LSHNLSGHT------------KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDD------------------------- 247 (503)
T ss_pred heeeccCCc------------cccchhhhcc-ceeeEEEecCCCceEEEEEEecC-------------------------
Confidence 456788999 9999999984 37899999999999999998762
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
..|+++| .+|..+|.+++|+++|..++++ .|+.|++||++ .++
T Consensus 248 ----------------------------------~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG~ 291 (503)
T KOG0282|consen 248 ----------------------------------RRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TGQ 291 (503)
T ss_pred ----------------------------------cceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccc-cce
Confidence 2355566 8999999999999999999998 99999999999 455
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
+...+ .....++++.|+|++.+.|++|+.|+.|+.||+|+++.. +.+.. |-+.|.
T Consensus 292 ~~~~f--------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~-------------hLg~i~ 346 (503)
T KOG0282|consen 292 VLSRF--------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDR-------------HLGAIL 346 (503)
T ss_pred EEEEE--------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHh-------------hhhhee
Confidence 54432 134567999999999889999999999999999999765 33333 457899
Q ss_pred EEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEE
Q 010801 332 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~i 410 (501)
.+.|-++|+++++.+| ++++||+.+. ..++..+..+.... ..++..+|+++++++-+.|+.|.+
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~hs--------------mP~~~~~P~~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMHT--------------MPCLTLHPNGKWFAAQSMDNYIAI 411 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCC-Cccchhhcchhhcc--------------CcceecCCCCCeehhhccCceEEE
Confidence 9999999999998875 9999999986 54444332221110 047999999999999999999999
Q ss_pred EecCCCCc--ceEEEecccCcccceeeccCCccccCccceeeeecccce-eec--cccCCcccccccCCCeEEEEEccCC
Q 010801 411 FSHGVGSA--GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTT 485 (501)
Q Consensus 411 wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~ 485 (501)
|.+..... ..+.+++|..+-+++....+.+|++ |++|+.+|. .+| ++...+.....|.+++..+.|||..
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCe-----EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 99865432 2467889887655544433349999 999999999 999 5556777788899999999999986
Q ss_pred -CEEEEee-CCeEEEEe
Q 010801 486 -NLIACAN-GNSLFFHY 500 (501)
Q Consensus 486 -~~la~~~-~~~~~i~~ 500 (501)
..+|+++ ++.|.+|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 4577777 55699985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=238.88 Aligned_cols=281 Identities=20% Similarity=0.324 Sum_probs=229.0
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+++|. +.|++++|+ ++++++++++.||.+++|++.+++.....
T Consensus 3 ~~~~~h~------------~~i~~~~~~--~~~~~l~~~~~~g~i~i~~~~~~~~~~~~--------------------- 47 (289)
T cd00200 3 RTLKGHT------------GGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTL--------------------- 47 (289)
T ss_pred hHhcccC------------CCEEEEEEc--CCCCEEEEeecCcEEEEEEeeCCCcEEEE---------------------
Confidence 3467888 899999998 77899999999999999999876533221
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 253 (501)
..|...+..+.|+|+++.++++ .++.|++|++... +..
T Consensus 48 ----------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-~~~ 86 (289)
T cd00200 48 ----------------------------------------KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-ECV 86 (289)
T ss_pred ----------------------------------------ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-cce
Confidence 5677888899999999999998 8999999999943 333
Q ss_pred eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
.. +..|...+.++.|+|++ +++++++.||.|++||+++++.. ..+. .|...+.++
T Consensus 87 ~~-------~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~----~~~~-------------~~~~~i~~~ 141 (289)
T cd00200 87 RT-------LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL----TTLR-------------GHTDWVNSV 141 (289)
T ss_pred EE-------EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE----EEec-------------cCCCcEEEE
Confidence 32 45777889999999997 88888888999999999865432 2222 356789999
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
.|+|+++++++++ ++.|++||++. .+.+..+..+...+ .+++|+|+++.+++++.|+.|++||
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEV---------------NSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEccc-cccceeEecCcccc---------------ceEEECCCcCEEEEecCCCcEEEEE
Confidence 9999999999987 79999999985 77778887776544 6899999999999999999999999
Q ss_pred cCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEE
Q 010801 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIA 489 (501)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la 489 (501)
+..+ .....+..|...+..+.+.+ ++.+ +++++.++. .+|+.. ........+...|.+++|+|++++|+
T Consensus 206 ~~~~-~~~~~~~~~~~~i~~~~~~~--~~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 206 LSTG-KCLGTLRGHENGVNSVAFSP--DGYL-----LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred CCCC-ceecchhhcCCceEEEEEcC--CCcE-----EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 9876 34467778888999999998 4666 788877888 999554 34444557888999999999999999
Q ss_pred EeeCC-eEEEEe
Q 010801 490 CANGN-SLFFHY 500 (501)
Q Consensus 490 ~~~~~-~~~i~~ 500 (501)
+++.| .+.+|.
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 98865 588884
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=224.02 Aligned_cols=282 Identities=14% Similarity=0.175 Sum_probs=241.9
Q ss_pred cccccceEEEEEcc---CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 29 LQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 29 ~~h~~~v~~v~~s~---~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..|+.+|-.++||| +|-+|++++.||.-.+-+-++|. .+.+|.||.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd---------------------------wigtfeghk---- 59 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD---------------------------WIGTFEGHK---- 59 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC---------------------------cEEeeeccC----
Confidence 46899999999986 89999999999988877777665 458899999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|+..... .+..+-++++.|=+-++||.-+|.....
T Consensus 60 --------gavw~~~l~--~na~~aasaaadftakvw~a~tgdelhs--------------------------------- 96 (334)
T KOG0278|consen 60 --------GAVWSATLN--KNATRAASAAADFTAKVWDAVTGDELHS--------------------------------- 96 (334)
T ss_pred --------cceeeeecC--chhhhhhhhcccchhhhhhhhhhhhhhh---------------------------------
Confidence 999999986 6777888899999999999988764432
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..|...|.+++|+.|.+.|++| .+..+++||++..+-.. ..+.
T Consensus 97 -----------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-------~E~~ 140 (334)
T KOG0278|consen 97 -----------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-------KEIS 140 (334)
T ss_pred -----------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-------hhhc
Confidence 3788899999999999999999 99999999999544332 3588
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|.+.|+.+.|.... +.|++++.|++||+||.+++... +.+.. +.+|+++.++++|++|..
T Consensus 141 ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGRILTI 201 (334)
T ss_pred CCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCCEEEE
Confidence 999999999999887 89999999999999999999765 44443 468999999999999988
Q ss_pred EcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 345 ~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+..+.|.+||..+ ..++..+...... .+.+.+|+...+++|++|..++.||..++..+....+
T Consensus 202 a~gssV~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 202 AYGSSVKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred ecCceeEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceeeeccc
Confidence 8779999999986 7777777766543 6899999999999999999999999999977755569
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+|.++|.++.|+| +|.. -++|+.||. ++|...
T Consensus 265 gh~gpVhcVrFSP--dGE~-----yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 265 GHFGPVHCVRFSP--DGEL-----YASGSEDGTIRLWQTT 297 (334)
T ss_pred CCCCceEEEEECC--CCce-----eeccCCCceEEEEEec
Confidence 9999999999999 7777 899999999 999443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=213.93 Aligned_cols=277 Identities=18% Similarity=0.266 Sum_probs=218.7
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
+...|...|.+|+|+-+|..||+|+.|+++.||+++..+.. .....++|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-------------------------~~~~~~gh~----- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-------------------------KELVYRGHT----- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-------------------------hhhcccCCC-----
Confidence 34568899999999999999999999999999999865321 224467888
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|-.++|.| +...+|++++.|++|++||++.+++......
T Consensus 65 -------~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~~------------------------------- 105 (313)
T KOG1407|consen 65 -------DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARIET------------------------------- 105 (313)
T ss_pred -------cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEeec-------------------------------
Confidence 8899999996 6678999999999999999999886654311
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
...=.-+.|+|+|++++++ .|..|...|.++ .+... -..
T Consensus 106 -------------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~-~~~~~--------~~~ 145 (313)
T KOG1407|consen 106 -------------------------------KGENINITWSPDGEYIAVGNKDDRITFIDART-YKIVN--------EEQ 145 (313)
T ss_pred -------------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecc-cceee--------hhc
Confidence 1222347899999999999 999999999883 33332 222
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
....+..++|+-++ .+++.....|+|.|.....-+.. ..+ ..|+....++.|+|+|+++|+|
T Consensus 146 ~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv----~si-------------~AH~snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 146 FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPV----QSI-------------KAHPSNCICIEFDPDGRYFATG 207 (313)
T ss_pred ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccc----ccc-------------ccCCcceEEEEECCCCceEeec
Confidence 34567888999776 77777777899999887654322 333 4477889999999999999999
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+ |-.+.+||++. --+++.+.-++-++ ..++|+.||++||+||+|..|-|=++++|..+ ..
T Consensus 208 sADAlvSLWD~~E-LiC~R~isRldwpV---------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~-~e-- 268 (313)
T KOG1407|consen 208 SADALVSLWDVDE-LICERCISRLDWPV---------------RTLSFSHDGRMLASASEDHFIDIAEVETGDRV-WE-- 268 (313)
T ss_pred cccceeeccChhH-hhhheeeccccCce---------------EEEEeccCcceeeccCccceEEeEecccCCeE-EE--
Confidence 6 69999999974 77778888777665 78999999999999999999999999998543 11
Q ss_pred cccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCC
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
..++++-..+||||...+||.+++|
T Consensus 269 ---------------------------------------------I~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 269 ---------------------------------------------IPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ---------------------------------------------eeccCCceeEEecCCCceeeEEecC
Confidence 1223356789999999999998853
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=221.92 Aligned_cols=309 Identities=15% Similarity=0.194 Sum_probs=235.9
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+++++.+|||||.++|||+.|..|+|+|++..-.. ...++...+.. . ....+++++-.|.
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak---s~~~em~~~~~---q---a~hPvIRTlYDH~-------- 172 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK---SKPKEMISGDT---Q---ARHPVIRTLYDHV-------- 172 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh---cchhhhccCCc---c---cCCceEeehhhcc--------
Confidence 58999999999999999999999999999998832110 01111111110 0 1234678888998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|+++.|+ |....|++++.|++|++||+.....++..+
T Consensus 173 ----devn~l~FH--Pre~ILiS~srD~tvKlFDfsK~saKrA~K----------------------------------- 211 (430)
T KOG0640|consen 173 ----DEVNDLDFH--PRETILISGSRDNTVKLFDFSKTSAKRAFK----------------------------------- 211 (430)
T ss_pred ----Ccccceeec--chhheEEeccCCCeEEEEecccHHHHHHHH-----------------------------------
Confidence 889999998 778899999999999999987654332211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
. .....+|.+++|+|.|.+++.| +-.++++||++ .-+++-.- ..-..|.+
T Consensus 212 ----------------------~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsa----nPd~qht~ 262 (430)
T KOG0640|consen 212 ----------------------V--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSA----NPDDQHTG 262 (430)
T ss_pred ----------------------H--hhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeec----Cccccccc
Confidence 1 2345689999999999999999 89999999999 45555321 22467999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec-ccceeEEEEeeCCCEEEEEc-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~~~~- 346 (501)
.|+++.+++.+ ++.++++.||.|++||--+++.+ ..+.. .| ...|.+..|..+|+||++.+
T Consensus 263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~------------AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGN------------AHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHh------------hcCCceeeeEEEccCCeEEeecCC
Confidence 99999999999 99999999999999998877654 33322 12 35799999999999999764
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCCcceEEEec
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|..+++|.+.+ ++.+.++.|....... . -.+...|.....+++.-.+ .+.+.-||..+...+..---+
T Consensus 326 DS~vkLWEi~t-~R~l~~YtGAg~tgrq--------~--~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg 394 (430)
T KOG0640|consen 326 DSTVKLWEIST-GRMLKEYTGAGTTGRQ--------K--HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG 394 (430)
T ss_pred cceeeeeeecC-CceEEEEecCCcccch--------h--hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC
Confidence 79999999997 8999998865321100 0 0045677777777776554 578999999998777677779
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
|.++++.+.-+|..++ +.+++.|-. +.|
T Consensus 395 Hn~a~R~i~HSP~~p~-------FmTcsdD~raRFW 423 (430)
T KOG0640|consen 395 HNGAVRWIVHSPVEPA-------FMTCSDDFRARFW 423 (430)
T ss_pred CCCCceEEEeCCCCCc-------eeeecccceeeee
Confidence 9999999999996443 789998888 888
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=229.64 Aligned_cols=287 Identities=14% Similarity=0.137 Sum_probs=224.7
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
....++.|+ +.|+-+.|+ ++|++||+++.|.+..+|++......+
T Consensus 216 t~qil~~ht------------dEVWfl~FS--~nGkyLAsaSkD~Taiiw~v~~d~~~k--------------------- 260 (519)
T KOG0293|consen 216 TWQILQDHT------------DEVWFLQFS--HNGKYLASASKDSTAIIWIVVYDVHFK--------------------- 260 (519)
T ss_pred hhhhHhhCC------------CcEEEEEEc--CCCeeEeeccCCceEEEEEEecCccee---------------------
Confidence 345677888 889999998 899999999999999999986533211
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
...++ .+|..+|..+.|+||.++++++ .+..+.+||+.++ .
T Consensus 261 ------------------------------------l~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg-d 302 (519)
T KOG0293|consen 261 ------------------------------------LKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG-D 302 (519)
T ss_pred ------------------------------------eeeee-ecccCceEEEEECCCCCeEEecCchHheeeccCCcc-h
Confidence 11222 7999999999999999999998 8888999999944 4
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
....+ -.++...+.+++|.||| ..+++|+.|+.+..||+..... ..|++ .. ...|.
T Consensus 303 ~~~~y------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~-----~~W~g-vr-----------~~~v~ 358 (519)
T KOG0293|consen 303 LRHLY------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNIL-----GNWEG-VR-----------DPKVH 358 (519)
T ss_pred hhhhc------ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchh-----hcccc-cc-----------cceeE
Confidence 44332 23356889999999999 9999999999999999987542 34444 11 13699
Q ss_pred EEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEE
Q 010801 332 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (501)
Q Consensus 332 ~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~i 410 (501)
+++.++||+++++. .|..|++|+..+ ......+..+.. + ++++.|.|++++.+.-.+..|++
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~-i---------------ts~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP-I---------------TSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhh-hhhhccccccCc-e---------------eEEEEcCCCcEEEEEcccCeeEE
Confidence 99999999988765 679999999875 443433433332 2 79999999999999999999999
Q ss_pred EecCCCCcceEEEecccCc--ccceeeccCCccccCccceeeeecccce-eec--cccCCcccccccCCCeEEEEEccCC
Q 010801 411 FSHGVGSAGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTT 485 (501)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~ 485 (501)
||++.. .++..+.+|+.. +-.-+|.-. +..+ +++|+.|++ .|| ..+..+..+.+|+..|++++|+|..
T Consensus 422 WDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~-~~~f-----iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 422 WDLEEN-KLVRKYFGHKQGHFIIRSCFGGG-NDKF-----IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred eecchh-hHHHHhhcccccceEEEeccCCC-Ccce-----EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 999965 555777888754 334455443 4556 899999999 999 5566778889999999999999987
Q ss_pred -CEEEEeeCCe-EEEEe
Q 010801 486 -NLIACANGNS-LFFHY 500 (501)
Q Consensus 486 -~~la~~~~~~-~~i~~ 500 (501)
.++|+|++|+ ++||.
T Consensus 495 p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWG 511 (519)
T ss_pred HHHhhccCCCCeEEEec
Confidence 5688888666 99995
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-31 Score=237.96 Aligned_cols=275 Identities=15% Similarity=0.185 Sum_probs=229.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+|.|+ |...+++++-.+|.|.||+.++....+.+
T Consensus 14 dRVKsVd~H--PtePw~la~LynG~V~IWnyetqtmVksf---------------------------------------- 51 (794)
T KOG0276|consen 14 DRVKSVDFH--PTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------------------- 51 (794)
T ss_pred CceeeeecC--CCCceEEEeeecCeeEEEecccceeeeee----------------------------------------
Confidence 889999998 67789999999999999999987766543
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.-..-+|++..|-+..+.+++| +|..|++|+.++.. .++. ++.|...|++
T Consensus 52 ---------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-kV~~-------FeAH~DyIR~ 102 (794)
T KOG0276|consen 52 ---------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-KVKT-------FEAHSDYIRS 102 (794)
T ss_pred ---------------------eecccchhhheeeeccceEEEecCCceEEEEecccce-eeEE-------eeccccceee
Confidence 3335678888898888999999 99999999999544 4443 8999999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEc-CCcE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNL 350 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-~~~i 350 (501)
++.+|.. .++++++.|-.|++||....=.+. ++| .||...|++++|+| |.+.+|+++ |++|
T Consensus 103 iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~---qtf-------------eGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 103 IAVHPTL-PYVLTSSDDMTIKLWDWENEWACE---QTF-------------EGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred eeecCCC-CeEEecCCccEEEEeeccCceeee---eEE-------------cCcceEEEEEEecCCCccceeeeeccccE
Confidence 9999998 899999999999999998753321 444 45889999999999 567888886 7999
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC--CcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
+||.+.. ..+..++++|...+ +++++-+. ..+|++|++|.+|+|||.++..++ +++++|..
T Consensus 166 KVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV-~TLeGHt~ 228 (794)
T KOG0276|consen 166 KVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV-QTLEGHTN 228 (794)
T ss_pred EEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecchHHHH-HHhhcccc
Confidence 9999985 88899999999877 78998874 579999999999999999998666 99999999
Q ss_pred cccceeeccCCccccCccceeeeecccce-eeccccC--CcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--HHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~--~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.|..+.|.|. .+.+++|+.||+ +||.... ....+.---.+|.+++-.+.++.+++|.+++..+.+
T Consensus 229 Nvs~v~fhp~-------lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 229 NVSFVFFHPE-------LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred cceEEEecCC-------CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 9999999995 334999999999 9995442 222233334689999999999999999988866654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-29 Score=210.78 Aligned_cols=268 Identities=18% Similarity=0.265 Sum_probs=210.5
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|+++.|+++|.+|++++.|.+++|||..+++.. .++..++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---------------------------~ti~skk---------- 56 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---------------------------KTINSKK---------- 56 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---------------------------eEeeccc----------
Confidence 688999999999999999999999999999977643 5666665
Q ss_pred cccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
-.|..++|- .....++.++. |.+||..++.+++.++.+
T Consensus 57 --yG~~~~~Ft--h~~~~~i~sStk~d~tIryLsl~dNkylRYF------------------------------------ 96 (311)
T KOG1446|consen 57 --YGVDLACFT--HHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF------------------------------------ 96 (311)
T ss_pred --ccccEEEEe--cCCceEEEccCCCCCceEEEEeecCceEEEc------------------------------------
Confidence 678899997 44455666654 889999999987755543
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.||...|.+|+.+|-+..++++ .|++|++||++ ...+...+ +..
T Consensus 97 -------------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l---------~~~ 141 (311)
T KOG1446|consen 97 -------------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL---------NLS 141 (311)
T ss_pred -------------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE---------ecC
Confidence 8999999999999999999999 99999999999 44454432 112
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~- 347 (501)
.-..++|+|+| -++|++.....|++||+|.-.... ...+.. . .+.....+.+.|+|||++|+.++.
T Consensus 142 ~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgP--F~tf~i-~---------~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 142 GRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKGP--FTTFSI-T---------DNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred CCcceeECCCC-cEEEEecCCCeEEEEEecccCCCC--ceeEcc-C---------CCCccceeeeEEcCCCCEEEEEeCC
Confidence 23467899999 999999888899999998753211 122222 0 012357899999999999988765
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-c
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-G 426 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 426 (501)
+.+++.|.-. +..+.++.++..... +. .+.+|+||++++++|+.||+|.+|+++++... ..+.+ +
T Consensus 209 s~~~~lDAf~-G~~~~tfs~~~~~~~----------~~--~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v-~~~~~~~ 274 (311)
T KOG1446|consen 209 SFIYLLDAFD-GTVKSTFSGYPNAGN----------LP--LSATFTPDSKFVLSGSDDGTIHVWNLETGKKV-AVLRGPN 274 (311)
T ss_pred CcEEEEEccC-CcEeeeEeeccCCCC----------cc--eeEEECCCCcEEEEecCCCcEEEEEcCCCcEe-eEecCCC
Confidence 8999999975 888888887766421 00 47899999999999999999999999999655 55555 7
Q ss_pred cCcccceeeccC
Q 010801 427 KNENRKPILQAA 438 (501)
Q Consensus 427 ~~~v~~~~~~~~ 438 (501)
..++.++.|.|.
T Consensus 275 ~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 275 GGPVSCVRFNPR 286 (311)
T ss_pred CCCccccccCCc
Confidence 889999999883
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-30 Score=210.67 Aligned_cols=294 Identities=13% Similarity=0.118 Sum_probs=230.0
Q ss_pred CCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 26 ~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
+...+|..+++.+.++.+|.+|++++.|.+..||-..+|+.+ .++.||.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---------------------------Gty~GHt---- 52 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---------------------------GTYDGHT---- 52 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee---------------------------eeecCCC----
Confidence 345579999999999999999999999999999998877754 8899999
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|+++... -+.+++++|+.|.+++|||+.+|+++...+.+. .+....+...++..
T Consensus 53 --------GavW~~Did--~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~--------------~Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 53 --------GAVWCCDID--WDSKHLITGSADQTAKLWDVETGKQLATWKTNS--------------PVKRVDFSFGGNLI 108 (327)
T ss_pred --------ceEEEEEec--CCcceeeeccccceeEEEEcCCCcEEEEeecCC--------------eeEEEeeccCCcEE
Confidence 999999986 678899999999999999999999877654432 22233333444333
Q ss_pred ccce---eccCcceEEEeccCce----eeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeee
Q 010801 186 YHLE---WTENMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 186 ~~~~---~~~~~~i~~w~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (501)
.... ....+.+.++++.... ..+|.... ..+.+.++.+-|.|.++.|++| .||.|.+||.+++.+.+..
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s-- 185 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS-- 185 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec--
Confidence 2221 1123477888887543 45556655 6677899999999999999999 9999999999966665553
Q ss_pred cCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 258 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
...|...|+.+.++|+. .++++++.|.+-++||.++-+.. +.+.. ..++++.+++|
T Consensus 186 -----~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~t--------------e~PvN~aaisP 241 (327)
T KOG0643|consen 186 -----DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTT--------------ERPVNTAAISP 241 (327)
T ss_pred -----hhhhccccccccccCCc-ceEEecccCccceeeeccceeeE----EEeee--------------cccccceeccc
Confidence 56788999999999998 99999999999999999987655 66665 57899999999
Q ss_pred CCCEEEEEcC---CcEEEEEeeC-----------CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 338 DGQHLLSRDY---MNLKLWDIRM-----------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 338 ~~~~l~~~~~---~~i~lwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
-...++.|+. ..|.--+.+. ..+.+...++|-+++ ++++|+|+|+..++|+
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI---------------NsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI---------------NSVAFHPDGKSYSSGG 306 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc---------------ceeEECCCCcccccCC
Confidence 8777776531 3332222221 034566778888876 7999999999999999
Q ss_pred CCCeEEEEecCCC
Q 010801 404 YSNLLRIFSHGVG 416 (501)
Q Consensus 404 ~dg~i~iwd~~~~ 416 (501)
+||.|++.-++..
T Consensus 307 EDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 307 EDGYVRLHHFDSN 319 (327)
T ss_pred CCceEEEEEeccc
Confidence 9999999877643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-30 Score=214.74 Aligned_cols=253 Identities=18% Similarity=0.279 Sum_probs=204.3
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
..++..+.+|+ +.|+.++|+ |+|..|++|+.|..|.+|++.+...-.
T Consensus 37 ~ap~m~l~gh~------------geI~~~~F~--P~gs~~aSgG~Dr~I~LWnv~gdceN~------------------- 83 (338)
T KOG0265|consen 37 QAPIMLLPGHK------------GEIYTIKFH--PDGSCFASGGSDRAIVLWNVYGDCENF------------------- 83 (338)
T ss_pred cchhhhcCCCc------------ceEEEEEEC--CCCCeEeecCCcceEEEEeccccccce-------------------
Confidence 34566788999 889999998 799999999999999999976532110
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
.+ +.+|.+.|..+.|.+|+..++++ .|.+|+.||.+++
T Consensus 84 ----------------------------------------~~-lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 84 ----------------------------------------WV-LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred ----------------------------------------ee-eccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence 01 16999999999999999999998 9999999999955
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
+... +..+|...|.++.-+.-|..++.+++.||++++||+|+.... ++++. ...
T Consensus 123 ~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~~--------------kyq 176 (338)
T KOG0265|consen 123 KRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFEN--------------KYQ 176 (338)
T ss_pred eeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh----hcccc--------------cee
Confidence 4443 378899999999866667678899999999999999987654 55544 357
Q ss_pred eeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
++++.|..++..+.+|. |+.|++||++. +.....+.||.+.+ +.+..+|+|.++.+-+.|.++
T Consensus 177 ltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtI---------------t~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADTI---------------TGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred EEEEEecccccceeeccccCceeeecccc-CcceEEeecccCce---------------eeEEeccCCCccccccccceE
Confidence 89999999999888886 79999999996 88899999999987 899999999999999999999
Q ss_pred EEEecCCCCc---ceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCC
Q 010801 409 RIFSHGVGSA---GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT 485 (501)
Q Consensus 409 ~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~ 485 (501)
++||+...-. .+..+.+| ...++......+|+|++
T Consensus 241 rvwd~rp~~p~~R~v~if~g~------------------------------------------~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGH------------------------------------------IHNFEKNLLKCSWSPNG 278 (338)
T ss_pred EEEEecccCCCCceEEEeecc------------------------------------------hhhhhhhcceeeccCCC
Confidence 9999975411 11222222 12334456778999999
Q ss_pred CEEEEee-CCeEEEEeC
Q 010801 486 NLIACAN-GNSLFFHYA 501 (501)
Q Consensus 486 ~~la~~~-~~~~~i~~~ 501 (501)
+.+..++ +..+|+|++
T Consensus 279 ~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDT 295 (338)
T ss_pred CccccccccceEEEeec
Confidence 9988887 556999974
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=220.07 Aligned_cols=299 Identities=16% Similarity=0.180 Sum_probs=227.4
Q ss_pred hhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceee
Q 010801 14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY 93 (501)
Q Consensus 14 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (501)
|+..+ ++ ...+.-+|++.|+|+.||.||.+||||+.+|.|+||+..++...
T Consensus 91 W~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~-------------------------- 141 (399)
T KOG0296|consen 91 WDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ-------------------------- 141 (399)
T ss_pred EEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE--------------------------
Confidence 66655 22 34455679999999999999999999999999999999988642
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+-.-- +.|.=++|+ |.+..|+.|+.||.+-+|.+.++...+++
T Consensus 142 -~~~~~e~------------~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~kv~-------------------- 186 (399)
T KOG0296|consen 142 -WKLDQEV------------EDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCKVM-------------------- 186 (399)
T ss_pred -EEeeccc------------CceEEEEec--ccccEEEeecCCCcEEEEECCCcceeeEe--------------------
Confidence 2221122 557778888 67889999999999999999885433332
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.+|..++++=.|.|+|+.++++ .||+|++||..+..+.
T Consensus 187 -----------------------------------------~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 187 -----------------------------------------SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred -----------------------------------------cCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 7999999999999999999999 9999999999955443
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
.++ -..-.....++.++..+ ..++.|+.++.+++-+..+++... ...+ ........+...+.+
T Consensus 226 ~~~-------~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~----~~n~-----~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 226 HKI-------TQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVN----CNNG-----TVPELKPSQEELDES 288 (399)
T ss_pred EEe-------cccccCcCCcccccccc-ceeEeccCCccEEEEccccceEEE----ecCC-----CCccccccchhhhhh
Confidence 332 11123456788888888 899999999999999888876442 1110 011111233444555
Q ss_pred EEEee---CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 333 IKFAN---DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 333 ~~~sp---~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+.+.| .=.+.|+|+ ||+|.|||+.. .++.... .|...+ +.+.|-+ ..+|++++.+|.|
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c-~he~~V---------------~~l~w~~-t~~l~t~c~~g~v 350 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHIC-EHEDGV---------------TKLKWLN-TDYLLTACANGKV 350 (399)
T ss_pred hhhcccccccchhhcccccceEEEEeccc-chhheec-cCCCce---------------EEEEEcC-cchheeeccCceE
Confidence 55544 445667776 69999999985 5544444 455554 7899998 6899999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
++||..+| .+..++.+|..+|.+.+++| ++++ +++++.|+. ++|
T Consensus 351 ~~wDaRtG-~l~~~y~GH~~~Il~f~ls~--~~~~-----vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 351 RQWDARTG-QLKFTYTGHQMGILDFALSP--QKRL-----VVTVSDDNTALVF 395 (399)
T ss_pred Eeeecccc-ceEEEEecCchheeEEEEcC--CCcE-----EEEecCCCeEEEE
Confidence 99999999 55599999999999999999 7777 999999998 776
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=211.74 Aligned_cols=241 Identities=18% Similarity=0.209 Sum_probs=197.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.+..|+|++ ...+.+++++.||++++||.....
T Consensus 61 D~LfdV~Wse-~~e~~~~~a~GDGSLrl~d~~~~s--------------------------------------------- 94 (311)
T KOG0277|consen 61 DGLFDVAWSE-NHENQVIAASGDGSLRLFDLTMPS--------------------------------------------- 94 (311)
T ss_pred cceeEeeecC-CCcceEEEEecCceEEEeccCCCC---------------------------------------------
Confidence 7899999995 445788899999999999943221
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
.++..+ +.|...|.++.|++ +++.++++ .|++|++|+.+ ..+.+.+ +.+|...|.
T Consensus 95 --------------~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~T-------f~gh~~~Iy 151 (311)
T KOG0277|consen 95 --------------KPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQT-------FNGHNSCIY 151 (311)
T ss_pred --------------cchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEe-------ecCCccEEE
Confidence 233333 79999999999987 45566777 99999999998 4455554 789999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc-CCc
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMN 349 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~-~~~ 349 (501)
..+|+|..++++++++.|+.+++||++..... ..++. |...|.++.|+.- ...|++|+ |+.
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~~i~a-------------h~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----MSIEA-------------HNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCce----eEEEe-------------ccceeEeecccccCCcEEEecCCCce
Confidence 99999998899999999999999999875322 22333 6678999999974 45666775 699
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
|+.||+++-..++.++.+|.-.+ ..+.|||. ...||+++.|-+++|||...+.....+..-|..
T Consensus 215 vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE 279 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE 279 (311)
T ss_pred EEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce
Confidence 99999998888999999998876 78999996 568999999999999999987777788889999
Q ss_pred cccceeeccCCccccCccceeeeecccce-eecc
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.+..+.+++- ++.. +|+.+-|.. .+|+
T Consensus 280 Fv~g~Dws~~-~~~~-----vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 280 FVCGLDWSLF-DPGQ-----VASTGWDELLYVWN 307 (311)
T ss_pred EEeccccccc-cCce-----eeecccccceeeec
Confidence 9999999987 4444 688888887 7774
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=227.28 Aligned_cols=277 Identities=17% Similarity=0.301 Sum_probs=216.9
Q ss_pred cccceEEEEEccCCCE-EEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~-latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
..+.|++++|||...+ +|+.+ .-++.||+..+.... +++....
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~---------------------------k~~srFk-------- 68 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR---------------------------KTFSRFK-------- 68 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh---------------------------hhHHhhc--------
Confidence 3578999999996543 34333 357999998765432 3333334
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.++.|. .||.+|++|...|.|++||+.+......
T Consensus 69 ----~~v~s~~fR--~DG~LlaaGD~sG~V~vfD~k~r~iLR~------------------------------------- 105 (487)
T KOG0310|consen 69 ----DVVYSVDFR--SDGRLLAAGDESGHVKVFDMKSRVILRQ------------------------------------- 105 (487)
T ss_pred ----cceeEEEee--cCCeEEEccCCcCcEEEeccccHHHHHH-------------------------------------
Confidence 779999997 8999999999999999999665432222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE-EEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+ .+|+.++..+.|+|++.. +++| +|+.+++||+. +... .. .+.+|+
T Consensus 106 -----------------------~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v-~~------~l~~ht 153 (487)
T KOG0310|consen 106 -----------------------L-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYV-QA------ELSGHT 153 (487)
T ss_pred -----------------------H-hhccCceeEEEecccCCeEEEecCCCceEEEEEcC-CcEE-EE------EecCCc
Confidence 2 799999999999996554 5567 89999999999 4433 22 378999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
..|++.+|+|..+.++++|+.||.|++||++.... .+.+. .|..+|..+.+-|.|..|++++.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----~v~el------------nhg~pVe~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----RVVEL------------NHGCPVESVLALPSGSLIASAGG 216 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-----eeEEe------------cCCCceeeEEEcCCCCEEEEcCC
Confidence 99999999998767999999999999999998631 23332 36789999999999999999988
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||+.++++.+..+..|...+ +++.+..++..|++|+-|+.|++||+.+-+.
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv--------- 272 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHVKVFDTTNYKV--------- 272 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccceEEEEccceEE---------
Confidence 9999999987677777777677765 8999999999999999999999999765411
Q ss_pred CcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEE
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 498 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 498 (501)
..+ ..+.++|.+++.+|++..+++|-.||+..
T Consensus 273 ------v~s---------------------------------~~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 273 ------VHS---------------------------------WKYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ------EEe---------------------------------eecccceeeEEecCCCceEEEecccceee
Confidence 111 13344888999999999999998888654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=237.92 Aligned_cols=301 Identities=13% Similarity=0.137 Sum_probs=210.0
Q ss_pred hhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeE
Q 010801 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (501)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (501)
++.+.++..... -.|-..|+....++++..+++++.+.....|+..++... -.+...+ ..+ ...
T Consensus 5 k~rh~~g~~~k~--~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-------~~~~~~G-----~~~--~~~ 68 (493)
T PTZ00421 5 RFRHTQGVPARP--DRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-------LKHTDYG-----KLA--SNP 68 (493)
T ss_pred cccccccccCCc--ccceeccccccccCCCCCcEeECCceEEEEEecCCceEE-------eeccccc-----cCC--CCC
Confidence 667777754433 345677888888888766777777777788886554211 0000000 000 011
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+| .++++|++|+.|++|++||+.++......
T Consensus 69 ~~l~GH~------------~~V~~v~fsP-~d~~~LaSgS~DgtIkIWdi~~~~~~~~~--------------------- 114 (493)
T PTZ00421 69 PILLGQE------------GPIIDVAFNP-FDPQKLFTASEDGTIMGWGIPEEGLTQNI--------------------- 114 (493)
T ss_pred ceEeCCC------------CCEEEEEEcC-CCCCEEEEEeCCCEEEEEecCCCcccccc---------------------
Confidence 2467898 9999999983 27789999999999999999765321100
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
..++..+ .+|...|.+++|+|++ .+|++| .|++|+|||++. +..
T Consensus 115 --------------------------------~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~~ 160 (493)
T PTZ00421 115 --------------------------------SDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GKA 160 (493)
T ss_pred --------------------------------CcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-CeE
Confidence 1122233 7899999999999985 688888 999999999994 444
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc-cee
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SIS 331 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~ 331 (501)
... +.+|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+.. |.. ...
T Consensus 161 ~~~-------l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~~-------------H~~~~~~ 215 (493)
T PTZ00421 161 VEV-------IKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVEA-------------HASAKSQ 215 (493)
T ss_pred EEE-------EcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEec-------------CCCCcce
Confidence 432 67799999999999999 99999999999999999987543 23333 333 345
Q ss_pred EEEEeeCCCEEEEEc-----CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CC
Q 010801 332 DIKFANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YS 405 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~-----~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~d 405 (501)
.+.|.+++..+++++ |+.|++||++....++.....+.... +....|++++++|++++ .|
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeCC
Confidence 678898877776532 48999999986445555444332211 13567899999999887 59
Q ss_pred CeEEEEecCCCCcceEEEecccCcccceeeccC
Q 010801 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (501)
Q Consensus 406 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 438 (501)
+.|++||+.++.........+..+...+++.|.
T Consensus 282 g~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999999999875443322345567778888774
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=218.67 Aligned_cols=288 Identities=14% Similarity=0.218 Sum_probs=242.3
Q ss_pred CCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccc
Q 010801 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (501)
Q Consensus 86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 165 (501)
..+..++..+.+++|. +-|.+|++- |.+++|++|+.|++|+|||+.+++++...
T Consensus 136 eWHapwKl~rVi~gHl------------gWVr~vavd--P~n~wf~tgs~DrtikIwDlatg~Lkltl------------ 189 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHL------------GWVRSVAVD--PGNEWFATGSADRTIKIWDLATGQLKLTL------------ 189 (460)
T ss_pred cccCcceehhhhhhcc------------ceEEEEeeC--CCceeEEecCCCceeEEEEcccCeEEEee------------
Confidence 3455788899999999 999999996 78899999999999999999999877654
Q ss_pred ccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEE
Q 010801 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (501)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iw 244 (501)
.+|...|..+++++...+++++ .|+.|+.|
T Consensus 190 -------------------------------------------------tGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 190 -------------------------------------------------TGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred -------------------------------------------------cchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 7899999999999999999998 99999999
Q ss_pred ECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
|++ ..+.++ ...+|-..|.+++.+|.- ..|++|+.|..+++||+++.... .++ .
T Consensus 221 DLe-~nkvIR-------~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V----~~l-------------~ 274 (460)
T KOG0285|consen 221 DLE-YNKVIR-------HYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV----HVL-------------S 274 (460)
T ss_pred ech-hhhhHH-------HhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE----EEe-------------c
Confidence 999 555554 368899999999999998 99999999999999999987533 333 5
Q ss_pred ecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 325 ~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
||..+|..+.+.|-...+++|+ |++|++||++. ++...++..|...+ .+++.+|....+|+++
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv---------------ral~lhP~e~~fASas 338 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV---------------RALCLHPKENLFASAS 338 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeeccccee---------------eEEecCCchhhhhccC
Confidence 5889999999999777788886 69999999996 89899998888765 7899999999999999
Q ss_pred CCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc----------cccccc
Q 010801 404 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH----------ELSYNL 472 (501)
Q Consensus 404 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~----------~~~~~~ 472 (501)
.| .|+-|++..+..+ ..+.+|...+..+.... ++. +++|+.+|. ..|+..... .-..+.
T Consensus 339 ~d-nik~w~~p~g~f~-~nlsgh~~iintl~~ns--D~v------~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s 408 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEFL-QNLSGHNAIINTLSVNS--DGV------LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES 408 (460)
T ss_pred Cc-cceeccCCccchh-hccccccceeeeeeecc--Cce------EEEcCCceEEEEEecCcCcccccccccccCCcccc
Confidence 87 5899999998655 55999999999998886 443 688988888 888333111 112345
Q ss_pred CCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 473 SSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
+..|.+.+|...|..|++|. +..|.+|.
T Consensus 409 EagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 409 EAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccceeEEeecccCceEEeccCCcceEEEe
Confidence 67899999999999998887 56688874
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=215.45 Aligned_cols=299 Identities=15% Similarity=0.200 Sum_probs=227.1
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
|+.++.+++-|.+|... ++++++|+.||.+++||..+......
T Consensus 98 pl~~~~hdDWVSsv~~~----~~~IltgsYDg~~riWd~~Gk~~~~~--------------------------------- 140 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA----SKWILTGSYDGTSRIWDLKGKSIKTI--------------------------------- 140 (423)
T ss_pred ccccccchhhhhhhccc----CceEEEeecCCeeEEEecCCceEEEE---------------------------------
Confidence 34455566888888763 67999999999999999875432221
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC---CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
.+|.++|.+++|.- ....|+++ .|.++++|-.+.+....... .
T Consensus 141 -----------------------------~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~ 187 (423)
T KOG0313|consen 141 -----------------------------VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----K 187 (423)
T ss_pred -----------------------------ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----h
Confidence 69999999888843 33358888 99999999998554443321 1
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc--c------cccceeecccccCCCcceeeecccceeEE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--D------HSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
...+|...|.++...++| ..+++|+.|.+|.+|+..+.... . +..+..+.......+...+.||..+|.++
T Consensus 188 ~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred HhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 235999999999999999 99999999999999993221100 0 00000000011122334678999999999
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
.|++ ...+.+++ |.+|+.||+.+ ++.+.++.+.... ++++.+|..++|++|+.|..|++||
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~ksl----------------~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTTNKSL----------------NCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeec-ccceeeeecCcce----------------eEeecccccceeeecCCCCceeecC
Confidence 9998 44555554 79999999997 8888777766654 6999999999999999999999999
Q ss_pred cCCCC--cceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc---ccCCcccccccCCCeEEEEEccCCC
Q 010801 413 HGVGS--AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS---SSGHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 413 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~---~~~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
..++. ...+.+-+|.+.|..+.++|. +... |++|+.|+. ++|+ ....+....+|..+|.++.|+. +.
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~-~~~~-----~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~ 401 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPT-NEFQ-----LVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GG 401 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCC-CceE-----EEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-Cc
Confidence 98753 346789999999999999997 5666 899999999 9993 3347778889999999999985 55
Q ss_pred EEEEee-CCeEEEEe
Q 010801 487 LIACAN-GNSLFFHY 500 (501)
Q Consensus 487 ~la~~~-~~~~~i~~ 500 (501)
.|++|+ ++.++||.
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 667666 77799885
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=240.59 Aligned_cols=318 Identities=13% Similarity=0.216 Sum_probs=225.0
Q ss_pred cccc-ccceEEEEEccCCCEEEEEe--cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 28 ELQD-VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 28 ~~~h-~~~v~~v~~s~~g~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
.+.| ...|.+++.+|||..+|||+ .||.++||+.+.-- +....... --.+.+.+...|.
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl---------~~~~~~~~------~l~k~l~~m~~h~--- 69 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL---------DEKEEKNE------NLPKHLCTMDDHD--- 69 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeecccccc---------chhhhhhc------ccchhheeecccc---
Confidence 3444 45699999999999999999 99999999966211 00000000 0122345566777
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|+|++|+ +||++||+|+.|+.|.+|.....-.......
T Consensus 70 ---------~sv~CVR~S--~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs----------------------------- 109 (942)
T KOG0973|consen 70 ---------GSVNCVRFS--PDGSYLASGSDDRLVMIWERAEIGSGTVFGS----------------------------- 109 (942)
T ss_pred ---------CceeEEEEC--CCCCeEeeccCcceEEEeeecccCCcccccc-----------------------------
Confidence 999999998 8999999999999999999874110000000
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.++. ..-...++...+ .+|...|..++|+|++.+++++ -|++|.|||..+. ..+++ +
T Consensus 110 -------~g~~------~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~v-------l 167 (942)
T KOG0973|consen 110 -------TGGA------KNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKV-------L 167 (942)
T ss_pred -------cccc------cccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeee-------e
Confidence 0000 000123455555 7999999999999999999999 9999999999955 55554 7
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+|...|-.+.|+|-| ++|++-+.|++|++|++.+-... +.+..+ ... ..-...+..+.|||||++|+
T Consensus 168 ~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~----k~It~p-f~~------~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIE----KSITKP-FEE------SPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred ecccccccceEECCcc-CeeeeecCCceEEEEEcccceee----Eeeccc-hhh------CCCcceeeecccCCCcCeec
Confidence 8999999999999999 99999999999999997664333 333331 110 01135688999999999999
Q ss_pred EEc-----CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-----Cc------------EEEE
Q 010801 344 SRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GL------------HFAT 401 (501)
Q Consensus 344 ~~~-----~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~------------~l~s 401 (501)
+.. ..++.|.+-.+ -+.-..+-||..++ ..+.|+|. .+ .+|+
T Consensus 236 s~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred chhhccCCcceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 863 16788888764 66667888998876 67888872 11 5677
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEE
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAW 481 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~ 481 (501)
|+.|++|.||.....+.+ +....-+...|++++|
T Consensus 300 gSqDrSlSVW~T~~~RPl----------------------------------------------~vi~~lf~~SI~DmsW 333 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPL----------------------------------------------FVIHNLFNKSIVDMSW 333 (942)
T ss_pred ecCCccEEEEecCCCCch----------------------------------------------hhhhhhhcCceeeeeE
Confidence 888888888877544322 1111224558999999
Q ss_pred ccCCCEEEEee-CCeEEEE
Q 010801 482 HPTTNLIACAN-GNSLFFH 499 (501)
Q Consensus 482 sp~~~~la~~~-~~~~~i~ 499 (501)
+|||-.|.+++ ++.++++
T Consensus 334 spdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 334 SPDGFSLFACSLDGTVALI 352 (942)
T ss_pred cCCCCeEEEEecCCeEEEE
Confidence 99998888777 4446665
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=200.18 Aligned_cols=286 Identities=15% Similarity=0.183 Sum_probs=218.6
Q ss_pred eeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccc
Q 010801 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (501)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (501)
.++||+ .+++.|+++ .+|.+|.+++.|.+..+|-..+|+..-.
T Consensus 5 ~l~GHE------------RplTqiKyN--~eGDLlFscaKD~~~~vw~s~nGerlGt----------------------- 47 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKYN--REGDLLFSCAKDSTPTVWYSLNGERLGT----------------------- 47 (327)
T ss_pred ccccCc------------cccceEEec--CCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence 478999 999999997 7999999999999999998877764433
Q ss_pred cCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeee
Q 010801 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 254 (501)
| .+|.+.|+|+...-+.+.+++| .|.++++||++++++ +.
T Consensus 48 -------------------------------------y-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~-la 88 (327)
T KOG0643|consen 48 -------------------------------------Y-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ-LA 88 (327)
T ss_pred -------------------------------------e-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE-EE
Confidence 3 7999999999999999999999 999999999995554 44
Q ss_pred eeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-----CCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.+ ....+|..+.|+++| ++++.... .+.|.++|++....... ...+...+.-+...
T Consensus 89 ~~--------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~----------s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 89 TW--------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDID----------SEEPYLKIPTPDSK 149 (327)
T ss_pred Ee--------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhc----------ccCceEEecCCccc
Confidence 32 245689999999999 87776654 47799999986431100 00011112234578
Q ss_pred eeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
++.+.|.|-+++|++|. +|.|..||++++.+.+...+.|...+ +.+++++|..++++++.|.+-
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccc
Confidence 99999999999999996 59999999997556667777777755 799999999999999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccc----------------cCCccccccc
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS----------------SGHHELSYNL 472 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~----------------~~~~~~~~~~ 472 (501)
++||+.+.. ..+++ ....|+++.+++|..+- . +..|+.+...+=.+ .+.+....+|
T Consensus 215 kl~D~~tl~-v~Kty-~te~PvN~aaisP~~d~-V-----ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 215 KLVDVRTLE-VLKTY-TTERPVNTAAISPLLDH-V-----ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred eeeecccee-eEEEe-eecccccceecccccce-E-----EecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 999999773 32443 45678999999996332 2 33333333233311 1444556789
Q ss_pred CCCeEEEEEccCCCEEEEeeCCe-EEEE
Q 010801 473 SSKLLHLAWHPTTNLIACANGNS-LFFH 499 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~~~~-~~i~ 499 (501)
-++|+++||||+|+.-++|++|+ ++++
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999999999999999999877 5543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=207.44 Aligned_cols=244 Identities=19% Similarity=0.323 Sum_probs=199.6
Q ss_pred cccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
-++.+..|+|+++. +.+++++.||+++|||+... ..++..++.|+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--------------------------s~Pi~~~kEH~-------- 104 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--------------------------SKPIHKFKEHK-------- 104 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC--------------------------CcchhHHHhhh--------
Confidence 37889999999954 67788889999999994422 23678899999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.++.|++ .+...++++|.|++|++|+....+-+.+
T Consensus 105 ----~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~T------------------------------------- 142 (311)
T KOG0277|consen 105 ----REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQT------------------------------------- 142 (311)
T ss_pred ----hheEEecccc-ccceeEEeeccCCceEeecCCCCcceEe-------------------------------------
Confidence 7799999985 5677888889999999999876653332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+ .+|...|....|+|. +++++++ .|+++++||++..++.+. ++.|.
T Consensus 143 -----------------------f-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~ 190 (311)
T KOG0277|consen 143 -----------------------F-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHN 190 (311)
T ss_pred -----------------------e-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEecc
Confidence 3 799999999999994 6677777 999999999997665543 57898
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~ 346 (501)
..|.++.|+.-..+++++|+.|+.|+.||+++-+. .+++ +.+|.-.|..+.|||.. ..|++++
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----pl~e-----------L~gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----PLFE-----------LNGHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccc-----ccee-----------ecCCceEEEEEecCcchhhHhhhcc
Confidence 99999999987778999999999999999998642 1222 35688899999999964 5677777
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~ 413 (501)
|-+++|||...+...+.+...|...+ ..+.|++ ++.++|+.+.|+.++||+-
T Consensus 255 YDmT~riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 255 YDMTVRIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccceEEecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccceeeecc
Confidence 59999999986566777788888765 6788887 5779999999999999983
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=236.69 Aligned_cols=276 Identities=14% Similarity=0.210 Sum_probs=227.6
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|..++|+ |...+++++-..|.|++||.+-+.++..+
T Consensus 10 sRvKglsFH--P~rPwILtslHsG~IQlWDYRM~tli~rF---------------------------------------- 47 (1202)
T KOG0292|consen 10 SRVKGLSFH--PKRPWILTSLHSGVIQLWDYRMGTLIDRF---------------------------------------- 47 (1202)
T ss_pred ccccceecC--CCCCEEEEeecCceeeeehhhhhhHHhhh----------------------------------------
Confidence 789999998 67789999999999999999877644332
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
..|.++|+.++|+|.+.++++| +|..|++|+.. ..+++- ++.+|-..|+.
T Consensus 48 ---------------------deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclf-------tL~GHlDYVRt 98 (1202)
T KOG0292|consen 48 ---------------------DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLF-------TLLGHLDYVRT 98 (1202)
T ss_pred ---------------------hccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehh-------hhccccceeEE
Confidence 7999999999999999999999 99999999999 556654 38899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|++.- ..++++|.|-+|+||+..+++.+ .+++ ||...|++..|+|....+++++ |.+||
T Consensus 99 ~~FHhey-PWIlSASDDQTIrIWNwqsr~~i----avlt-------------GHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 99 VFFHHEY-PWILSASDDQTIRIWNWQSRKCI----AVLT-------------GHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred eeccCCC-ceEEEccCCCeEEEEeccCCceE----EEEe-------------cCceEEEeeccCCccceEEEecccceEE
Confidence 9999998 89999999999999999998654 4444 4788999999999999999997 79999
Q ss_pred EEEeeCC-------CC---------------------ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 352 LWDIRMD-------ST---------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 352 lwd~~~~-------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
|||+.-- +. ..+.+.||+.. |+-++|+|.-.+|++|+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG---------------VNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG---------------VNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc---------------cceEEecCCcceEEecC
Confidence 9998520 00 01123334333 37799999999999999
Q ss_pred CCCeEEEEecCCCC-cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccc--cccCCCeEEE
Q 010801 404 YSNLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELS--YNLSSKLLHL 479 (501)
Q Consensus 404 ~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~--~~~~~~i~~~ 479 (501)
+|..|++|.+...+ ...-+..+|.+.|.++.|.|. ..+ +.+.|.|+. ++|+...+.... ..-......+
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~--q~l-----IlSnsEDksirVwDm~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH--QDL-----ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCc--cce-----eEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence 99999999997542 345677899999999999993 334 889999999 999766544332 2345678899
Q ss_pred EEccCCCEEEEeeCCeEEEEe
Q 010801 480 AWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~~~~~~i~~ 500 (501)
+-||..+++|+|-++|+.||.
T Consensus 299 aahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 299 AAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred EecCCcceeeeecCCceEEEE
Confidence 999999999999999998884
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=224.32 Aligned_cols=415 Identities=12% Similarity=0.101 Sum_probs=284.0
Q ss_pred cccccceEEEEEccCCC---EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeE----------e
Q 010801 29 LQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK----------T 95 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 95 (501)
-+|.+-|.+++|...+. +||+++.|..||||.+.-+...+ ...++ .........|.+... .
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~---~~~~e---~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED---SNERE---DSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc---ccccc---cccccccCCceeeeeeeEEEEEehhh
Confidence 36999999999998554 88999999999999987443210 00000 000011111211111 3
Q ss_pred eeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccc
Q 010801 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (501)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (501)
.+.||+ +-|+++.|+ |.+..|++++.|+++.+|...+..-+.......++. + -..+....
T Consensus 262 ll~GHe------------DWV~sv~W~--p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~----g--g~a~GF~g 321 (764)
T KOG1063|consen 262 LLMGHE------------DWVYSVWWH--PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV----G--GSAGGFWG 321 (764)
T ss_pred hhcCcc------------cceEEEEEc--cchhhheecccCcceEEEecCCccceEEEEEEeecc----c--ccccceee
Confidence 345888 999999998 778899999999999999887653222221111110 0 11234555
Q ss_pred cCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeee
Q 010801 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 254 (501)
..++++...+..-++ .|-.++|.............. .+|...|.+++|.|.|++|++. .|.+-++|-.-..++...
T Consensus 322 ~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wH 398 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWH 398 (764)
T ss_pred EEEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeeccccccccee
Confidence 666666655444433 677888884333333333333 8999999999999999999998 999999987652222222
Q ss_pred eeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC---------------c--cc---------ccccc
Q 010801 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS---------------A--LC---------DHSAR 308 (501)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~---------------~--~~---------~~~~~ 308 (501)
.+ ..-+-|...++|+++-+.. ..|++|.....+|+|+.... . .. .....
T Consensus 399 Ei----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 399 EI----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ee----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 11 1235578889999998864 78999999999999987542 0 00 00000
Q ss_pred eee-----c-c----------------cccCC-----------CcceeeecccceeEEEEeeCCCEEEEEc------CCc
Q 010801 309 ILR-----D-A----------------AESHG-----------SKSFFTEIIASISDIKFANDGQHLLSRD------YMN 349 (501)
Q Consensus 309 ~~~-----~-~----------------~~~~~-----------~~~~~~~h~~~i~~~~~sp~~~~l~~~~------~~~ 349 (501)
.+. + + .++|. ....+.||...|.+++.+|+|+++|++. ...
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 110 0 0 00000 0114689999999999999999999863 167
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc---eEEEecc
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEAG 426 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~ 426 (501)
|++|+..+ -...+.+.+|.-.+ +.++|||||++|++.|.|.++.+|........ ....+.|
T Consensus 554 I~lw~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H 617 (764)
T KOG1063|consen 554 IRLWNTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH 617 (764)
T ss_pred EEEEeccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc
Confidence 99999986 66777899998766 89999999999999999999999998665333 2348899
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eeccccCC----cc--cccccCCCeEEEEEccCC-----CEEEEeeCC
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----HE--LSYNLSSKLLHLAWHPTT-----NLIACANGN 494 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~----~~--~~~~~~~~i~~~~~sp~~-----~~la~~~~~ 494 (501)
..-|+...++| ++.+ ++++|+|++ ++|..... +. ....+...|++++|.|-- ..+|+|-..
T Consensus 618 tRIIWdcsW~p--de~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 618 TRIIWDCSWSP--DEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred ceEEEEcccCc--ccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 99999999999 6776 999999999 99944322 11 356788999999998742 256777755
Q ss_pred e-EEEEe
Q 010801 495 S-LFFHY 500 (501)
Q Consensus 495 ~-~~i~~ 500 (501)
| |++|.
T Consensus 691 GeI~l~~ 697 (764)
T KOG1063|consen 691 GEIVLWR 697 (764)
T ss_pred cEEEEEe
Confidence 5 88886
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-27 Score=188.06 Aligned_cols=308 Identities=17% Similarity=0.184 Sum_probs=225.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhcccc-ccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF-TSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
++..+.|.+++|+|.|.+.|+|+...+.+|-....-... +.. +....|+....+.-+.|.
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~-------------r~~hea~~~pp~v~~kr~khhk------ 89 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL-------------RHAHEAAKQPPSVLCKRNKHHK------ 89 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc-------------ccccccccCCCeEEeeeccccC------
Confidence 345789999999999999999999999998765422110 000 112233333444455666
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|+|.+|+ |+|+++++|++|++|++...+...+...-
T Consensus 90 ------gsiyc~~ws--~~geliatgsndk~ik~l~fn~dt~~~~g---------------------------------- 127 (350)
T KOG0641|consen 90 ------GSIYCTAWS--PCGELIATGSNDKTIKVLPFNADTCNATG---------------------------------- 127 (350)
T ss_pred ------ccEEEEEec--CccCeEEecCCCceEEEEecccccccccC----------------------------------
Confidence 999999998 89999999999999999876654432210
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC----CCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
....+ .-|.+.|..++|-. .+.+|+++ .|..|++-|.. .++.+..
T Consensus 128 ---------------------~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a------ 178 (350)
T KOG0641|consen 128 ---------------------HDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHA------ 178 (350)
T ss_pred ---------------------cceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCccee------
Confidence 00011 57889999999953 35567775 67888888887 4444442
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+.+|.+.|.++ ++-++ -++++|+.|.+|++||++-.... .++.......+. ....|.+++..|.|++
T Consensus 179 -~sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v----~~l~~~~~~~gl------essavaav~vdpsgrl 245 (350)
T KOG0641|consen 179 -LSGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCV----NTLDNDFHDGGL------ESSAVAAVAVDPSGRL 245 (350)
T ss_pred -ecCCcccEEEE-EEecC-cEEEccCCCceEEEEeeecccee----eeccCcccCCCc------ccceeEEEEECCCcce
Confidence 78899988887 44556 89999999999999999987543 222220000000 1367999999999999
Q ss_pred EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC---C
Q 010801 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---S 417 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~ 417 (501)
|++|. |....+||++ .++.++.+..|...+ .++.|+|...++.+++.|..|++-|++.. +
T Consensus 246 l~sg~~dssc~lydir-g~r~iq~f~phsadi---------------r~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIR-GGRMIQRFHPHSADI---------------RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred eeeccCCCceEEEEee-CCceeeeeCCCccce---------------eEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 99995 6999999999 599999999888765 79999999999999999999999999753 2
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
........|++.+....+.|. +-. +.+.+.|.. .+|..
T Consensus 310 l~~~vv~ehkdk~i~~rwh~~-d~s------fisssadkt~tlwa~ 348 (350)
T KOG0641|consen 310 LPIMVVAEHKDKAIQCRWHPQ-DFS------FISSSADKTATLWAL 348 (350)
T ss_pred CceEEEEeccCceEEEEecCc-cce------eeeccCcceEEEecc
Confidence 224566789999889999885 222 577888888 88843
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=213.74 Aligned_cols=270 Identities=16% Similarity=0.262 Sum_probs=205.9
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~ 108 (501)
.|.-+|.||+++|+.+++++++.+|+|.-|++.+++... ..+... . + -...+.....- ++|.
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~------~i~~~~-e--v-~k~~~~~~k~~r~~h~------- 202 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDR------YIIERD-E--V-LKSHGNPLKESRKGHV------- 202 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccc------cccccc-h--h-hhhccCCCCccccccc-------
Confidence 589999999999999999999999999999999887530 000000 0 0 00011111111 2666
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++.+ +|+++|++|+.|..|.||+.++.+.++..
T Consensus 203 -----keil~~avS--~Dgkylatgg~d~~v~Iw~~~t~ehv~~~----------------------------------- 240 (479)
T KOG0299|consen 203 -----KEILTLAVS--SDGKYLATGGRDRHVQIWDCDTLEHVKVF----------------------------------- 240 (479)
T ss_pred -----ceeEEEEEc--CCCcEEEecCCCceEEEecCcccchhhcc-----------------------------------
Confidence 779999998 89999999999999999999987744432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|.+.|.+++|-.....++++ .|++|++|+++ ....+. ++.+|.
T Consensus 241 --------------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~ve-------tlyGHq 286 (479)
T KOG0299|consen 241 --------------------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVE-------TLYGHQ 286 (479)
T ss_pred --------------------------cccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHH-------HHhCCc
Confidence 7999999999998877788887 99999999999 433443 378999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
..|.++.....+ +.+-+|+.|+++++|++..... .++ .+|.+.+.+++|-.+. .+++|+|
T Consensus 287 d~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----lif-------------rg~~~sidcv~~In~~-HfvsGSd 346 (479)
T KOG0299|consen 287 DGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LIF-------------RGGEGSIDCVAFINDE-HFVSGSD 346 (479)
T ss_pred cceeeechhccc-ceEEeccccceeEEEeccccce-----eee-------------eCCCCCeeeEEEeccc-ceeeccC
Confidence 999999988877 7777888999999999954321 233 3456789999998654 5667765
Q ss_pred -CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 348 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|.|.+|++.+ .+++.+.....+..+...++..+ +.+++++..|...++|+|+.+|.|++|.+..+
T Consensus 347 nG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 347 NGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9999999986 88888776444433332222323 45689999999999999999999999999987
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=226.74 Aligned_cols=240 Identities=18% Similarity=0.286 Sum_probs=204.2
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 110 (501)
.+.|+++.|+++|++||+|..+|.|.|||....+.. ..+.+ |.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~---------------------------~~~~~~h~--------- 260 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT---------------------------RTLRGSHA--------- 260 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---------------------------ccccCCcC---------
Confidence 689999999999999999999999999998866543 55666 77
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|.+++|. +..+.+|+.|+.|..+|++..+....
T Consensus 261 ---~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-------------------------------------- 295 (484)
T KOG0305|consen 261 ---SRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-------------------------------------- 295 (484)
T ss_pred ---ceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh--------------------------------------
Confidence 889999995 56889999999999999987652211
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+.+|...|..++|++|+.++++| .|+.+.|||.......+. +..|.+.
T Consensus 296 ----------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~~~H~aA 345 (484)
T KOG0305|consen 296 ----------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------FTEHTAA 345 (484)
T ss_pred ----------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------Eecccee
Confidence 016899999999999999999999 999999999964444443 6789999
Q ss_pred eEEEEEecCCCcEEEEEeC--CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 270 ITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
|.+++|+|-...+||+|+. |++|++||..++... ..... ...|..+.|++..+-|+++ +
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecC
Confidence 9999999988789999765 999999999988655 22222 3689999999998877765 2
Q ss_pred --CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 --YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 --~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
++.|.||+..+ .+.+..+.+|...+ ..++++|||..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 48999999987 88899999999876 78999999999999999999999998764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=219.95 Aligned_cols=281 Identities=20% Similarity=0.236 Sum_probs=224.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
-|.+.|..+.|-++...|++|+.|..|++|+...++. ....++.|-.
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------------~~~~tLaGs~-------- 219 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------------ELISTLAGSL-------- 219 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------------hhhhhhhccC--------
Confidence 4889999999999989999999999999999887653 2445666666
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|+++.|- +++..+++++.|+.+++|++.+.+....+
T Consensus 220 ----g~it~~d~d--~~~~~~iAas~d~~~r~Wnvd~~r~~~TL------------------------------------ 257 (459)
T KOG0288|consen 220 ----GNITSIDFD--SDNKHVIAASNDKNLRLWNVDSLRLRHTL------------------------------------ 257 (459)
T ss_pred ----CCcceeeec--CCCceEEeecCCCceeeeeccchhhhhhh------------------------------------
Confidence 889999996 88999999999999999999987755433
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|+++.|......+++| .|.+|++||+. ...+.+.+ + ...
T Consensus 258 -------------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~------l--~~S 303 (459)
T KOG0288|consen 258 -------------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTV------L--PGS 303 (459)
T ss_pred -------------------------cccccceeeehhhccccceeeccccchhhhhhhh-hhheeccc------c--ccc
Confidence 7899999999998777678888 99999999999 45565542 2 234
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.+..|+.++ ..+++|-.|+.|++||++..... ...+. .+.|+++..+++|..|.+.+ |
T Consensus 304 ~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 304 QCNDIVCSI---SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred cccceEecc---eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCC
Confidence 456666663 56999999999999999987654 33443 35899999999998888764 7
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
.++.+.|+++ ......+........ .+.+.+.|||++.|+++||.||.|+||++.+++.. ..++...
T Consensus 363 dtl~viDlRt-~eI~~~~sA~g~k~a-----------sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE-~~l~~s~ 429 (459)
T KOG0288|consen 363 DTLKVIDLRT-KEIRQTFSAEGFKCA-----------SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE-KVLSLST 429 (459)
T ss_pred Cceeeeeccc-ccEEEEeeccccccc-----------cccceeEECCCCceeeeccCCCcEEEEEccCceEE-EEeccCC
Confidence 9999999996 666666665443211 12278999999999999999999999999998554 6665554
Q ss_pred C--cccceeeccCCccccCccceeeeecccce-eec
Q 010801 428 N--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 428 ~--~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
. .|.++.|.+ .|+. |+++++++. .+|
T Consensus 430 s~~aI~s~~W~~--sG~~-----Llsadk~~~v~lW 458 (459)
T KOG0288|consen 430 SNAAITSLSWNP--SGSG-----LLSADKQKAVTLW 458 (459)
T ss_pred CCcceEEEEEcC--CCch-----hhcccCCcceEec
Confidence 4 499999999 4555 788888877 777
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=196.69 Aligned_cols=244 Identities=18% Similarity=0.233 Sum_probs=201.8
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+..|. ++|..++|+ -+|++.++++.|++|++|+...+.+++..
T Consensus 11 ~~l~~~q------------gaV~avryN--~dGnY~ltcGsdrtvrLWNp~rg~liktY--------------------- 55 (307)
T KOG0316|consen 11 SILDCAQ------------GAVRAVRYN--VDGNYCLTCGSDRTVRLWNPLRGALIKTY--------------------- 55 (307)
T ss_pred eeecccc------------cceEEEEEc--cCCCEEEEcCCCceEEeecccccceeeee---------------------
Confidence 4567777 999999997 89999999999999999999887765543
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 253 (501)
.+|...|..++.+.|+..|++| .|..+.+||++++ +..
T Consensus 56 ----------------------------------------sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG-kv~ 94 (307)
T KOG0316|consen 56 ----------------------------------------SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG-KVD 94 (307)
T ss_pred ----------------------------------------cCCCceeeeccccccccccccCCCCceEEEEEcccC-eee
Confidence 7999999999999999999998 9999999999954 444
Q ss_pred eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
+ .+.+|.+.|+.++|+.+. ..+++|+.|.++++||.++... ..++++.. -...|.++
T Consensus 95 R-------r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde-------------a~D~V~Si 151 (307)
T KOG0316|consen 95 R-------RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE-------------AKDGVSSI 151 (307)
T ss_pred e-------ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh-------------hcCceeEE
Confidence 4 389999999999999998 9999999999999999998643 22344443 24578888
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
..+ +..|++|+ ||+++.||++. ++...-+-+|+- ++++|++|++.+..++.|+++++.|
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeecc
Confidence 776 56777775 79999999996 776655555543 7999999999999999999999999
Q ss_pred cCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
-++| ++.+.+++|++.-+.+.......... .++|+.||. .+|+..
T Consensus 212 k~tG-klL~sYkGhkn~eykldc~l~qsdth-----V~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 212 KETG-KLLKSYKGHKNMEYKLDCCLNQSDTH-----VFSGSEDGKVYFWDLV 257 (307)
T ss_pred cchh-HHHHHhcccccceeeeeeeeccccee-----EEeccCCceEEEEEec
Confidence 9999 55589999998777666555434444 899999999 999544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=233.42 Aligned_cols=301 Identities=13% Similarity=0.157 Sum_probs=204.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCC----CCcccccce
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP----SFAHGYHLE 189 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 189 (501)
+.|+++.|+ +||++||+|+.|+.|+||.+...+.......... ++...+.......+.... .......-.
T Consensus 268 gaIw~mKFS--~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~----~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 268 GAIWAMKFS--HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSS----CMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred CcEEEEEeC--CCCceeeecCCCceEEEEEEeccchhcccccccc----hhhhhhhhccccCcccccccccccccccccc
Confidence 999999998 8999999999999999999987443221111100 011111100000000000 000000000
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
......+.+-+........++..| .+|.+.|.+|+|+.++ +|+++ .|.+|+||++. .+.++++ ..|..
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~--------F~Hnd 410 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKV--------FSHND 410 (712)
T ss_pred ccCCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeE--------EecCC
Confidence 001111222223333345677777 8999999999999876 67776 99999999999 6778874 46999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~- 347 (501)
.|+||+|+|-.+++|++|+.||.||||++...+.. .|.. -..-|++++|.|||++.+.|+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~D-------------l~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWND-------------LRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeE-----eehh-------------hhhhheeEEeccCCceEEEEEec
Confidence 99999999988899999999999999999887543 2222 1357999999999999999985
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
|.+++|++. +.+....+..+...... . .... |+++.|.|. ...|++.+.|..|||+|.... .+...+++.
T Consensus 473 G~C~fY~t~-~lk~~~~~~I~~~~~Kk---~-~~~r---ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~ 543 (712)
T KOG0283|consen 473 GYCRFYDTE-GLKLVSDFHIRLHNKKK---K-QGKR---ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGF 543 (712)
T ss_pred cEEEEEEcc-CCeEEEeeeEeeccCcc---c-cCce---eeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhccc
Confidence 999999997 36665555433221100 0 0012 378999874 335778889999999999665 455788877
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.+.-..+..+-..+|++ +++++.|.. .+|+..
T Consensus 544 ~n~~SQ~~Asfs~Dgk~-----IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 544 RNTSSQISASFSSDGKH-----IVSASEDSWVYIWKND 576 (712)
T ss_pred ccCCcceeeeEccCCCE-----EEEeecCceEEEEeCC
Confidence 77666555555559999 999998888 999653
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=216.51 Aligned_cols=263 Identities=15% Similarity=0.235 Sum_probs=214.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.+|+|+.+ |+..+++|..|++|++||..+..+....
T Consensus 198 kgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~~~L---------------------------------------- 233 (499)
T KOG0281|consen 198 KGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECLKIL---------------------------------------- 233 (499)
T ss_pred CceEEEEe----cchhhhcccccCceEEeccccHHHHHhh----------------------------------------
Confidence 78999998 5678999999999999999887655433
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|.+.|.|+.|. .+.+++| .|.+|++||++ .++++++ +-.|...|..
T Consensus 234 ---------------------~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-tge~l~t-------lihHceaVLh 282 (499)
T KOG0281|consen 234 ---------------------TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-TGEPLNT-------LIHHCEAVLH 282 (499)
T ss_pred ---------------------hcCCCcEEeeecc--ceEEEecCCCceEEEEecc-CCchhhH-------HhhhcceeEE
Confidence 7999999999984 5589999 99999999999 6666664 6789999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|+. .++++++.|.++.+||+...... . .+..+.||...|+.+.|+ .+||++++ |.+|+
T Consensus 283 lrf~n---g~mvtcSkDrsiaVWdm~sps~i----t----------~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 283 LRFSN---GYMVTCSKDRSIAVWDMASPTDI----T----------LRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred EEEeC---CEEEEecCCceeEEEeccCchHH----H----------HHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 99984 58999999999999999875421 1 122345688999999997 56999885 69999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
+|++.+ ...++++.+|...+ .+.-..++++++|+.|.+|++||++.|.++ ..+++|..-|+
T Consensus 344 vW~~st-~efvRtl~gHkRGI-----------------AClQYr~rlvVSGSSDntIRlwdi~~G~cL-RvLeGHEeLvR 404 (499)
T KOG0281|consen 344 VWSTST-CEFVRTLNGHKRGI-----------------ACLQYRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVR 404 (499)
T ss_pred EEeccc-eeeehhhhcccccc-----------------eehhccCeEEEecCCCceEEEEeccccHHH-HHHhchHHhhh
Confidence 999987 99999999998764 333347899999999999999999999665 89999999999
Q ss_pred ceeeccCCccccCccceeeeecccce-eeccccC-----------CcccccccCCCeEEEEEccCCCEEEEee-CCeEEE
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-----------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 498 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-----------~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i 498 (501)
++.|... . +++|..||+ ++|+... .+.....|++.|..+.|. ...|++++ ++.+.|
T Consensus 405 ciRFd~k----r-----IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILi 473 (499)
T KOG0281|consen 405 CIRFDNK----R-----IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILI 473 (499)
T ss_pred heeecCc----e-----eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEE
Confidence 9999643 3 899999999 9994431 112345788899999884 44555555 888999
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|+
T Consensus 474 Wd 475 (499)
T KOG0281|consen 474 WD 475 (499)
T ss_pred EE
Confidence 97
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=215.10 Aligned_cols=291 Identities=20% Similarity=0.259 Sum_probs=227.1
Q ss_pred hhhhhccCCCCCCccccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceee
Q 010801 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY 93 (501)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (501)
++.-.|.++-....-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...++.
T Consensus 49 KleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-------------------------- 102 (433)
T KOG0268|consen 49 KLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-------------------------- 102 (433)
T ss_pred HHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------------------------
Confidence 455567777767777899999999999977 78999999999999999866543
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+++|. +.|..|++. . ..+++++.|++|+.|.++.. ....
T Consensus 103 -~~f~AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~-p~~t--------------------- 143 (433)
T KOG0268|consen 103 -RTFKAHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGP-PLHT--------------------- 143 (433)
T ss_pred -heeeccc------------CceeeEEec--c--cceEEecCCcceeeeeccCC-ccee---------------------
Confidence 7899999 999999995 2 67899999999999998763 1111
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF 253 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~ 253 (501)
+ --...+..+.-+..+..++++ ...|.|||... ..++
T Consensus 144 ---------------------------------------i--lg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R-~~Pv 180 (433)
T KOG0268|consen 144 ---------------------------------------I--LGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQR-DNPV 180 (433)
T ss_pred ---------------------------------------e--ecccccccccccccccccccc-Cceeeeccccc-CCcc
Confidence 1 112344455555555566665 23589999883 3333
Q ss_pred eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
+. +.--...|.++.|+|-...+|+++..|+.|.+||++++....+ +... ..-+.+
T Consensus 181 ~s-------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K---Vi~~---------------mRTN~I 235 (433)
T KOG0268|consen 181 SS-------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK---VILT---------------MRTNTI 235 (433)
T ss_pred ce-------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce---eeee---------------ccccce
Confidence 32 3334567899999999867888998999999999999877642 2222 356889
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
+|+|.+-.+++|+ |..++.||++....++....+|...+ .+++|||.|+-+++||.|.+|+||.
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEee
Confidence 9999766666665 69999999998788888888888876 7999999999999999999999999
Q ss_pred cCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+..+..........-..|.++.++. |.++ +++|+.|+. ++|
T Consensus 301 ~~~~~SRdiYhtkRMq~V~~Vk~S~--Dsky-----i~SGSdd~nvRlW 342 (433)
T KOG0268|consen 301 VNHGHSRDIYHTKRMQHVFCVKYSM--DSKY-----IISGSDDGNVRLW 342 (433)
T ss_pred cCCCcchhhhhHhhhheeeEEEEec--cccE-----EEecCCCcceeee
Confidence 9887655333344455788999998 8888 999999999 999
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=244.80 Aligned_cols=259 Identities=13% Similarity=0.176 Sum_probs=193.8
Q ss_pred cccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
+.+...|.+++|++ ++.+||+++.||+|+|||+.+++. ...+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---------------------------~~~~~~H~------ 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---------------------------VTEMKEHE------ 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---------------------------EEEecCCC------
Confidence 34567899999987 578999999999999999986643 36788998
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|++++|+| +++.+|++|+.|++|++||+.++......
T Consensus 576 ------~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---------------------------------- 614 (793)
T PLN00181 576 ------KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI---------------------------------- 614 (793)
T ss_pred ------CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE----------------------------------
Confidence 8899999983 46789999999999999999876643321
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEec-CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.. ...+.++.|+ +++..|++| .|+.|++||++........ +.+
T Consensus 615 ---------------------------~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-------~~~ 659 (793)
T PLN00181 615 ---------------------------KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-------MIG 659 (793)
T ss_pred ---------------------------ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-------ecC
Confidence 22 3468899994 578999999 9999999999854433332 568
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|.++.|. ++ ..|++++.|+.|++||++...... .......+.+|...+..++|+|++.+|++|
T Consensus 660 h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~-----------~~~~l~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 660 HSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI-----------NETPLHSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred CCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc-----------CCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 99999999997 55 789999999999999997542100 001112345678889999999999999999
Q ss_pred c-CCcEEEEEeeCCCCceeEeecc-ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+ |+.|++|+... ..++..+... ...+.... . ......+.+++|+|++.+|++|+.||.|+||++
T Consensus 727 s~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~-~--~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 727 SETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE-V--DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eCCCEEEEEECCC-CCceEEEecccCCcccccc-c--CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 6 59999999864 4444333211 11110000 0 011112479999999999999999999999986
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=216.77 Aligned_cols=248 Identities=18% Similarity=0.249 Sum_probs=189.9
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-..+-++|+ ..+.||+|. ...|++|+..+++.. ....-++
T Consensus 177 DfY~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------------~l~~~~~---------- 217 (484)
T KOG0305|consen 177 DFYLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------------ELCSFGE---------- 217 (484)
T ss_pred cHhhhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------------EeEecCC----------
Confidence 3455667888 466788875 458999999887542 1122224
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|+++.|+ ++|.+|++|..+|.|.|||..+.+.....
T Consensus 218 --~~vtSv~ws--~~G~~LavG~~~g~v~iwD~~~~k~~~~~-------------------------------------- 255 (484)
T KOG0305|consen 218 --ELVTSVKWS--PDGSHLAVGTSDGTVQIWDVKEQKKTRTL-------------------------------------- 255 (484)
T ss_pred --CceEEEEEC--CCCCEEEEeecCCeEEEEehhhccccccc--------------------------------------
Confidence 789999998 89999999999999999999876644332
Q ss_pred cCcceEEEeccCceeeeeeEeecCC-cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+ |...|-+++|+ +..+.+| .++.|..+|++....... .+.+|...
T Consensus 256 -----------------------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~qe 303 (484)
T KOG0305|consen 256 -----------------------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHRQE 303 (484)
T ss_pred -----------------------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------hhhcccce
Confidence 34 89999999998 5678888 999999999996555443 27889999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEc--
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-- 346 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-- 346 (501)
|..++|++++ ++|++|+.|+.+.|||....... ..+ .+|.+.|.+++|+| ...+||+|+
T Consensus 304 VCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~----~~~-------------~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 304 VCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPK----FTF-------------TEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred eeeeEECCCC-CeeccCCCccceEeccCCCcccc----EEE-------------eccceeeeEeeeCCCccCceEEcCCC
Confidence 9999999999 99999999999999999554332 233 44789999999999 566888873
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE--eCCCeEEEEecCCCCcceEEE
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~ 423 (501)
|++|++||+.+ ++.+..+...... .++.|++..+-|+++ -.++.|.||+..+. .+...+
T Consensus 366 ~D~~i~fwn~~~-g~~i~~vdtgsQV----------------csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l 427 (484)
T KOG0305|consen 366 ADRCIKFWNTNT-GARIDSVDTGSQV----------------CSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL 427 (484)
T ss_pred cccEEEEEEcCC-CcEecccccCCce----------------eeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee
Confidence 59999999986 8877777655442 789999998666653 34789999999875 222444
Q ss_pred ecccC
Q 010801 424 EAGKN 428 (501)
Q Consensus 424 ~~~~~ 428 (501)
.+|..
T Consensus 428 ~gH~~ 432 (484)
T KOG0305|consen 428 LGHTS 432 (484)
T ss_pred cCCcc
Confidence 44443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=220.55 Aligned_cols=239 Identities=18% Similarity=0.257 Sum_probs=169.2
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccccee-eeeccCCCccccccccccccc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.+..+.+|. +.|.+++|+| .++.+|++|+.|++|++||+.++... ...
T Consensus 66 ~v~~L~gH~------------~~V~~lafsP-~~~~lLASgS~DgtIrIWDi~t~~~~~~~i------------------ 114 (568)
T PTZ00420 66 PVIKLKGHT------------SSILDLQFNP-CFSEILASGSEDLTIRVWEIPHNDESVKEI------------------ 114 (568)
T ss_pred eEEEEcCCC------------CCEEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCCcccccc------------------
Confidence 456788999 8999999983 13689999999999999999764311 000
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEE-EEE-cCCeEEEEECCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEIS 249 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~ 249 (501)
..+...+ .+|...|.+++|+|++..+ +++ .|++|++||++..
T Consensus 115 -----------------------------------~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg 158 (568)
T PTZ00420 115 -----------------------------------KDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE 158 (568)
T ss_pred -----------------------------------ccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 0111222 6899999999999998765 577 9999999999954
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
..... +. |...|.+++|+|+| .+|++++.|+.|++||+++++.. ..+.. |.+.
T Consensus 159 ~~~~~--------i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl~g-------------H~g~ 211 (568)
T PTZ00420 159 KRAFQ--------IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSFHI-------------HDGG 211 (568)
T ss_pred cEEEE--------Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE----EEEec-------------ccCC
Confidence 43322 22 45679999999999 99999999999999999987643 33333 4443
Q ss_pred e-----eEEEEeeCCCEEEEEc-C----CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 330 I-----SDIKFANDGQHLLSRD-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 330 i-----~~~~~sp~~~~l~~~~-~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
+ ....|++++.+|++++ + ++|+|||++...+++..+..+..... + ......++|.++
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~----------L---~p~~D~~tg~l~ 278 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP----------L---IPHYDESTGLIY 278 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc----------e---EEeeeCCCCCEE
Confidence 3 2234568888888753 3 37999999865677766654332210 0 122334568899
Q ss_pred EEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccC
Q 010801 400 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 438 (501)
++|+.|+.|++|++..+.........+..+...++|.|.
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 999999999999998763222222235677888888885
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-26 Score=191.74 Aligned_cols=274 Identities=18% Similarity=0.228 Sum_probs=212.2
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|+++.|+ .+|.++++++.|.+++|||..+++..+..
T Consensus 15 ~~i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti---------------------------------------- 52 (311)
T KOG1446|consen 15 GKINSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTI---------------------------------------- 52 (311)
T ss_pred CceeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEe----------------------------------------
Confidence 779999998 89999999999999999999998876654
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE-EEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..+...+..+.|...... +.+. .|.+|+.-++. ..+.++. +.+|...|
T Consensus 53 ---------------------~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNkylRY-------F~GH~~~V 103 (311)
T KOG1446|consen 53 ---------------------NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKYLRY-------FPGHKKRV 103 (311)
T ss_pred ---------------------ecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCceEEE-------cCCCCceE
Confidence 344556677778544444 4444 59999999999 5566664 89999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-Cc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~ 349 (501)
.+++.+|-+ ..+++++.|++|++||++..+.. ..+.. ..-..++|.|+|-++|++.. +.
T Consensus 104 ~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 104 NSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL---------------SGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec---------------CCCcceeECCCCcEEEEecCCCe
Confidence 999999998 99999999999999999965432 22222 34566889999999999876 69
Q ss_pred EEEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
|++||++.- ..+..++........ ..+.+.|||||++|..+...+.+++.|.-.|. +..++..+..
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~ 230 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPN 230 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccC
Confidence 999999863 456666654422110 11689999999999999999999999999884 5577776665
Q ss_pred cc---cceeeccCCccccCccceeeeecccce-eec--cccCCcccccc-cCCCeEEEEEccCCCEEEEeeCCeEEEE
Q 010801 429 EN---RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN-LSSKLLHLAWHPTTNLIACANGNSLFFH 499 (501)
Q Consensus 429 ~v---~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~~~~~i~ 499 (501)
.- -..+|.| ++++ +.+|+.||. .+| ..+..+....+ +..++.++.|+|.-.++|+++.. +.+|
T Consensus 231 ~~~~~~~a~ftP--ds~F-----vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~-l~fw 300 (311)
T KOG1446|consen 231 AGNLPLSATFTP--DSKF-----VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN-LVFW 300 (311)
T ss_pred CCCcceeEEECC--CCcE-----EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce-EEEE
Confidence 44 4566677 8888 999999999 999 44445555555 57889999999998888877654 4444
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=192.88 Aligned_cols=274 Identities=16% Similarity=0.211 Sum_probs=210.0
Q ss_pred cccceEEEEEcc-CCCEEEEEecCCcEEEEEecCC-cCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGG-KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.+.|.+++||| ...+++.|+-||+||+|+++.. ... . +....|.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-------------------------~-ka~~~~~------- 72 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-------------------------P-KAQQSHD------- 72 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc-------------------------c-hhhhccC-------
Confidence 368899999999 5566778999999999999863 221 1 3345566
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|.+++|+ .+|..+++|+.|+.+++||+.+++...+
T Consensus 73 -----~PvL~v~Ws--ddgskVf~g~~Dk~~k~wDL~S~Q~~~v------------------------------------ 109 (347)
T KOG0647|consen 73 -----GPVLDVCWS--DDGSKVFSGGCDKQAKLWDLASGQVSQV------------------------------------ 109 (347)
T ss_pred -----CCeEEEEEc--cCCceEEeeccCCceEEEEccCCCeeee------------------------------------
Confidence 999999998 7899999999999999999999875543
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC--EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..|.++|.++.|-+... .|++| .|++|+.||.+... .+..+.
T Consensus 110 --------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~-------- 154 (347)
T KOG0647|consen 110 --------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQ-------- 154 (347)
T ss_pred --------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeee--------
Confidence 57899999999976554 88999 99999999999444 443321
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
..+.++++..- . .+++++..++.|.+|+++++.... +..+. | ..-.+.+++..+|.+..+.|
T Consensus 155 LPeRvYa~Dv~--~-pm~vVata~r~i~vynL~n~~te~---k~~~S----p--------Lk~Q~R~va~f~d~~~~alG 216 (347)
T KOG0647|consen 155 LPERVYAADVL--Y-PMAVVATAERHIAVYNLENPPTEF---KRIES----P--------LKWQTRCVACFQDKDGFALG 216 (347)
T ss_pred ccceeeehhcc--C-ceeEEEecCCcEEEEEcCCCcchh---hhhcC----c--------ccceeeEEEEEecCCceEee
Confidence 23456665543 3 678999999999999998864332 11111 1 12458899999988877777
Q ss_pred c-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 346 D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
+ +|.+.+..+.. . +.-.+|+.|..... ..+.++.|.+++|+|....|++++.||++.+||-+.. ...++
T Consensus 217 siEGrv~iq~id~-~~~~~nFtFkCHR~~~~------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~ 288 (347)
T KOG0647|consen 217 SIEGRVAIQYIDD-PNPKDNFTFKCHRSTNS------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKT 288 (347)
T ss_pred eecceEEEEecCC-CCccCceeEEEeccCCC------CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhc
Confidence 6 59999998874 4 44566777775322 1225778899999999999999999999999998765 44588
Q ss_pred EecccCcccceeeccCCcccc
Q 010801 423 VEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~ 443 (501)
.+.|..+|.+..|+. +|.+
T Consensus 289 s~~~~qpItcc~fn~--~G~i 307 (347)
T KOG0647|consen 289 SETHPQPITCCSFNR--NGSI 307 (347)
T ss_pred cCcCCCccceeEecC--CCCE
Confidence 889999999999998 6766
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=202.42 Aligned_cols=244 Identities=18% Similarity=0.274 Sum_probs=198.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.++...|....++||+.|..+.++|...++. +..+.||.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------------l~~~~Gh~---------- 261 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------------LATLKGHT---------- 261 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh---------------------------hhhccCcc----------
Confidence 45789999999888999999999999999887664 38899999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|+.+.|+ ++...+++++.|..|++|...........
T Consensus 262 --kki~~v~~~--~~~~~v~~aSad~~i~vws~~~~s~~~~~-------------------------------------- 299 (506)
T KOG0289|consen 262 --KKITSVKFH--KDLDTVITASADEIIRVWSVPLSSEPTSS-------------------------------------- 299 (506)
T ss_pred --eEEEEEEec--cchhheeecCCcceEEeeccccccCcccc--------------------------------------
Confidence 889999998 77789999999999999998765422221
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..|..+|+.+..+|.|.+|+++ .|++..+.|++++....... -+...-.+
T Consensus 300 -----------------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ 350 (506)
T KOG0289|consen 300 -----------------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS------DETSDVEY 350 (506)
T ss_pred -----------------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe------ecccccee
Confidence 6899999999999999999999 99999999999555443321 11233468
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-Cc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~ 349 (501)
++.+|+||| .+|.+|..||.|++||+.++... .. |.+|.++|..++|+.+|-||+++.| +.
T Consensus 351 ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~----a~-------------Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 351 TSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNV----AK-------------FPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred EEeeEcCCc-eEEeccCCCceEEEEEcCCcccc----cc-------------CCCCCCceeEEEeccCceEEEEEecCCe
Confidence 999999999 99999999999999999887532 22 4568999999999999999999865 88
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|++||++. .+...++...... .+.+++|.+.|.+|+.++.|=.|++++-.+.
T Consensus 413 V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 413 VKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred EEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 99999996 6666666644432 1268999999999999988877777765444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=199.70 Aligned_cols=382 Identities=11% Similarity=0.104 Sum_probs=264.8
Q ss_pred CCCCccccccceEEEEEccCCCEEEEEecCC--------cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEe
Q 010801 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKT 95 (501)
Q Consensus 24 ~~~~~~~h~~~v~~v~~s~~g~~latg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (501)
.+..-..|++.|.|++.+||.-.+|+|-..| .++|||..+-.. +.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------------------------L~ 148 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------------------------LH 148 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------------------------ee
Confidence 3344567999999999999999999876555 589999664322 23
Q ss_pred eeccCCcchhhccccccccceeEEEEeecCCCCEEEEe--eCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~--s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
.+...+ ..|.+++|++...|.+++.. +.+..+.+||.+.+......+ ..+..+
T Consensus 149 V~g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-------------~sne~v 203 (626)
T KOG2106|consen 149 VIGFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-------------TSNEVV 203 (626)
T ss_pred eecccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-------------eccceE
Confidence 333334 77999999976667777665 577889999988664322110 011223
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
..+.+.|....+.... ..+.+.+|+.+.....+-...+.......|.|++|.++|. +++| ++|.|.||+.. ..+.
T Consensus 204 ~~a~FHPtd~nliit~--Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~ 279 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITC--GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRI 279 (626)
T ss_pred EEEEeccCCCcEEEEe--CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceE
Confidence 3333333333222221 2678999999987766666666445567899999999985 6778 99999999987 4444
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc-------ccc-eeeccc----------
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SAR-ILRDAA---------- 314 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------~~~-~~~~~~---------- 314 (501)
.+. ...|.+.|.+++.-.+| . |++|+.|+.|..||-.-.+.... .++ +.+++.
T Consensus 280 ~k~-------~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 280 SKQ-------VHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeE-------eeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 443 33899999999999998 5 55599999999999332211100 001 111100
Q ss_pred -----ccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 315 -----ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 315 -----~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
..........+|......++.+|+...+++++ |+.+++|+ . .+++.+....... .
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~----------------~ 411 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA----------------E 411 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce----------------e
Confidence 00001112367888999999999988888765 69999999 2 5666555444333 5
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CC
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GH 465 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~ 465 (501)
++.|+|.| .+|.|+..|...+.|.++. .+ .++.....++..+.++| +|.+ ||.|+.|+. .++..+ +.
T Consensus 412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~l-v~~~~d~~~ls~v~ysp--~G~~-----lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGTATGRWFVLDTETQ-DL-VTIHTDNEQLSVVRYSP--DGAF-----LAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EeeccCcc-eEEEeeccceEEEEecccc-ee-EEEEecCCceEEEEEcC--CCCE-----EEEecCCCeEEEEEECCCCc
Confidence 89999999 9999999999999999984 33 44444588999999999 7888 999999999 999443 22
Q ss_pred ccccc--ccCCCeEEEEEccCCCEEEEeeCCe-EEEE
Q 010801 466 HELSY--NLSSKLLHLAWHPTTNLIACANGNS-LFFH 499 (501)
Q Consensus 466 ~~~~~--~~~~~i~~~~~sp~~~~la~~~~~~-~~i~ 499 (501)
..... -+.++|+++.||+|+++|.+.+.|- +..|
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 22211 1228999999999999999999776 4444
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=196.08 Aligned_cols=321 Identities=16% Similarity=0.190 Sum_probs=237.7
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..+|.+.|+.++-......+.+++.|.+-+||.++++.++ .++.||.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL---------------------------~~Y~GH~------ 190 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL---------------------------ATYTGHT------ 190 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccce---------------------------eeecccc------
Confidence 3469999999999988889999999999999999988765 8899999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceee----eeccCCCcccccccccccccCccccCCCCCCc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK----IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+.|++|+|+ +.+.++++++.|++..||...-.-... ...+...++ .. .+....
T Consensus 191 ------GSVNsikfh--~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE------------~e---~sDe~~ 247 (481)
T KOG0300|consen 191 ------GSVNSIKFH--NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE------------EE---HSDEHN 247 (481)
T ss_pred ------cceeeEEec--cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh------------hh---cccccc
Confidence 999999998 678899999999999999743110000 000000000 00 000000
Q ss_pred ccccceeccCc-ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 184 HGYHLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 184 ~~~~~~~~~~~-~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
-..++...+++ .|++ ++..+ .+|.+.|.+..|-..|+.++++ .|.+..+||++ .+..+.+
T Consensus 248 ~d~d~~~~sD~~tiRv----------Pl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-tge~v~~------ 309 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTIRV----------PLMRL-TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-TGEVVNI------ 309 (481)
T ss_pred cccccccccCCceeee----------eeeee-eccccceEehhhhcCcceeeeeeccccceeeeec-cCceecc------
Confidence 00111111111 2332 33344 7999999999999999999999 99999999999 5666664
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+.+|....+.++-+|.. +++++.+.|.+.++||.+..- +...+ |.||...|+++.|.-+.+
T Consensus 310 -LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI---~sV~V-------------FQGHtdtVTS~vF~~dd~- 370 (481)
T KOG0300|consen 310 -LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI---QSVAV-------------FQGHTDTVTSVVFNTDDR- 370 (481)
T ss_pred -ccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc---ceeee-------------ecccccceeEEEEecCCc-
Confidence 89999999999999998 999999999999999998531 11233 456889999999998665
Q ss_pred EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc-
Q 010801 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG- 419 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~- 419 (501)
+++|+ |.+|++||+++...++.++...... +.++.+..++.|+.--.+..|++||+...+..
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 56665 5999999999877888888765543 68999988889999999999999999754221
Q ss_pred --eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 420 --GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 420 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
...-++|..-|.+.++....+..- |.+++.|.. .-|+.
T Consensus 435 lPrtsRqgHrRMV~c~AW~eehp~cn-----LftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 435 LPRTSRQGHRRMVTCCAWLEEHPACN-----LFTCGFDRMVAGWKI 475 (481)
T ss_pred CCcccccccceeeeeeeccccCcccc-----cccccccceeeeeEe
Confidence 123468888899999986544333 778888877 66743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-26 Score=216.53 Aligned_cols=219 Identities=14% Similarity=0.144 Sum_probs=164.9
Q ss_pred ccccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
...|.+.|++++|+| ++++||+|+.||+|+|||+.++... ......+..+.+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~----- 125 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHT----- 125 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCC-----
Confidence 346999999999999 8899999999999999999765321 00122456788998
Q ss_pred ccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.+++|+ |+ +.+|++++.|++|+|||+.+++.....
T Consensus 126 -------~~V~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-------------------------------- 164 (493)
T PTZ00421 126 -------KKVGIVSFH--PSAMNVLASAGADMVVNVWDVERGKAVEVI-------------------------------- 164 (493)
T ss_pred -------CcEEEEEeC--cCCCCEEEEEeCCCEEEEEECCCCeEEEEE--------------------------------
Confidence 889999998 44 468999999999999999887643322
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+|...|.+++|+|+|.+|+++ .|+.|++||++++. .+.. +.
T Consensus 165 -----------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~v~t-------l~ 207 (493)
T PTZ00421 165 -----------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSS-------VE 207 (493)
T ss_pred -----------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-EEEE-------Ee
Confidence 5788899999999999999999 99999999999544 4332 45
Q ss_pred Ccccc-eEEEEEecCCCcEEEEEe----CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 265 DLTEV-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 265 ~~~~~-v~~v~~~p~~~~~l~~~~----~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
+|... +..+.|.+++ ..+++++ .|+.|++||+++..... ..... .+...+....|++++
T Consensus 208 ~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~---~~~~~------------d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 208 AHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPY---STVDL------------DQSSALFIPFFDEDT 271 (493)
T ss_pred cCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCce---eEecc------------CCCCceEEEEEcCCC
Confidence 66543 4567889887 6666543 47999999998754221 11111 012356667899999
Q ss_pred CEEEEEc--CCcEEEEEeeCCCCceeEee
Q 010801 340 QHLLSRD--YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 340 ~~l~~~~--~~~i~lwd~~~~~~~~~~~~ 366 (501)
++|++++ |+.|++||+.. ++++....
T Consensus 272 ~~L~lggkgDg~Iriwdl~~-~~~~~~~~ 299 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMN-ERLTFCSS 299 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeC-CceEEEee
Confidence 9888763 79999999985 66665543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-26 Score=189.65 Aligned_cols=275 Identities=15% Similarity=0.156 Sum_probs=207.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|+.|.|+|.++.|++++-||++++|++...+.. ..-.|.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------------~~~~~~---------- 54 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------------LKFKHG---------- 54 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------------------hheecC----------
Confidence 578999999999999999999999999998866431 122355
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
.++.+.+|. +...+++|+.||.|+++|+.++....+
T Consensus 55 --~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~~~~i--------------------------------------- 90 (323)
T KOG1036|consen 55 --APLLDCAFA---DESTIVTGGLDGQVRRYDLNTGNEDQI--------------------------------------- 90 (323)
T ss_pred --Cceeeeecc---CCceEEEeccCceEEEEEecCCcceee---------------------------------------
Confidence 889999995 577899999999999999998764332
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..|...|.|+.+++....+++| .|++|++||.+ ....... ......|
T Consensus 91 -----------------------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~--------~d~~kkV 138 (323)
T KOG1036|consen 91 -----------------------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGT--------FDQGKKV 138 (323)
T ss_pred -----------------------ccCCCceEEEEeeccCCeEEEcccCccEEEEecc-ccccccc--------cccCceE
Confidence 5889999999999887788888 99999999998 3332221 1233478
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
.++... + +.|++|+.|..|.+||+++.....+ .-+ ...+-.+.++++-|++.-.++++ +|.
T Consensus 139 y~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q---~re------------S~lkyqtR~v~~~pn~eGy~~sSieGR 200 (323)
T KOG1036|consen 139 YCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQ---RRE------------SSLKYQTRCVALVPNGEGYVVSSIEGR 200 (323)
T ss_pred EEEecc--C-CEEEEeecCceEEEEEcccccchhh---hcc------------ccceeEEEEEEEecCCCceEEEeecce
Confidence 888766 3 6799999999999999998653320 000 11234689999999877666554 788
Q ss_pred EEEEEeeCCC----CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 350 LKLWDIRMDS----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 350 i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|.+=.++. . +....|+.|.... ...+.+++|++++|+|-...+|||+.||.|.+||+.+.+.+
T Consensus 201 VavE~~d~-s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl------ 267 (323)
T KOG1036|consen 201 VAVEYFDD-SEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL------ 267 (323)
T ss_pred EEEEccCC-chHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh------
Confidence 88766653 3 3445677776542 23456668899999999999999999999999999877443
Q ss_pred ccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
....+++..|..++|+.+|..||+++
T Consensus 268 -----------------------------------------~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 268 -----------------------------------------KQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred -----------------------------------------hhccCCCCceEEEEeccCCCeEEEEe
Confidence 11122344688899999999999887
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=194.86 Aligned_cols=303 Identities=16% Similarity=0.213 Sum_probs=215.8
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceee-eeccCCCcccccccccccccCc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+..|+ +++.+-+|+ +||.++++|+.|..|+|.|++..-.+. ..++...
T Consensus 106 ~ylt~HK------------~~cR~aafs--~DG~lvATGsaD~SIKildvermlaks~~~em~~~--------------- 156 (430)
T KOG0640|consen 106 KYLTSHK------------SPCRAAAFS--PDGSLVATGSADASIKILDVERMLAKSKPKEMISG--------------- 156 (430)
T ss_pred EEEeecc------------cceeeeeeC--CCCcEEEccCCcceEEEeehhhhhhhcchhhhccC---------------
Confidence 4466787 889999998 899999999999999999987421110 0000000
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC--
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-- 250 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-- 250 (501)
+.....-.++++ ..|...|+++.|+|....|++| .|++|++||+....
T Consensus 157 ----------------------------~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK 207 (430)
T KOG0640|consen 157 ----------------------------DTQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK 207 (430)
T ss_pred ----------------------------CcccCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHH
Confidence 000001133444 7899999999999999999999 99999999998332
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
+..+ .-.-..+|+++.|+|.| .+|++|..-..+++||+.+.+. |-. .+ | -.+|.+.|
T Consensus 208 rA~K--------~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qc-------fvs-an-P-----d~qht~ai 264 (430)
T KOG0640|consen 208 RAFK--------VFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQC-------FVS-AN-P-----DDQHTGAI 264 (430)
T ss_pred HHHH--------HhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeE-------eee-cC-c-----ccccccce
Confidence 1111 12234689999999999 9999999999999999988642 222 11 1 24588999
Q ss_pred eEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+++.+++.|++.++++ ||.|++||--. ++++.++. .|.+.. |.+..|..+|++|.+.+.|..+
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gse--------------vcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSE--------------VCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCce--------------eeeEEEccCCeEEeecCCccee
Confidence 9999999999999997 69999999875 78888775 344321 2689999999999999999999
Q ss_pred EEEecCCCCcceEEEecc-----cCcccceeeccCCccccCccceeeeecccce-eeccc---cCCcccccccCCCeEEE
Q 010801 409 RIFSHGVGSAGGITVEAG-----KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHL 479 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~---~~~~~~~~~~~~~i~~~ 479 (501)
++|.+.+++.+ +++.+- ...-+...|....+.- |.---..+. .-|+. .+......+|.+.+..+
T Consensus 330 kLWEi~t~R~l-~~YtGAg~tgrq~~rtqAvFNhtEdyV------l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 330 KLWEISTGRML-KEYTGAGTTGRQKHRTQAVFNHTEDYV------LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred eeeeecCCceE-EEEecCCcccchhhhhhhhhcCccceE------EccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 99999999665 333322 2222333444432211 111122223 66722 23334467899999999
Q ss_pred EEccCCCEEEEeeCCe-EEEEe
Q 010801 480 AWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.-||.+.-..++++|. .++|+
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred EeCCCCCceeeecccceeeeee
Confidence 9999999999988665 88886
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=222.32 Aligned_cols=271 Identities=16% Similarity=0.252 Sum_probs=221.7
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...+.+..|. ..++++++.|++|.+|+..++.. ....+.||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~--------------------------i~~~l~GH~--------- 249 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL--------------------------ILTRLVGHF--------- 249 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE--------------------------EEeeccCCC---------
Confidence 46778889988 56789999999999999887654 334499999
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|+++++. ..+..+++|+.|+++++||..++++....
T Consensus 250 ---g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~l------------------------------------- 287 (537)
T KOG0274|consen 250 ---GGVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHSL------------------------------------- 287 (537)
T ss_pred ---CCceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEEe-------------------------------------
Confidence 999999996 46789999999999999999998876654
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+|...|.++... ...+++| .|.+|++|+++ .+.++.+ +.+|..+
T Consensus 288 ------------------------~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l-------~~~h~~~ 333 (537)
T KOG0274|consen 288 ------------------------QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNL-------LRGHTGP 333 (537)
T ss_pred ------------------------cCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEE-------ecccccc
Confidence 7899999998764 3467777 99999999999 6667765 5669999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|+++..+ + .++++|+.|++|++||..+++.. +.+ .+|...|.++.+.+. ..+++|+ |+
T Consensus 334 V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~sl-------------~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 334 VNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCL----KSL-------------SGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EEEEEec--C-CEEEEEecCceEEEEEhhhceee----eee-------------cCCcceEEEEEecCc-ceEEeeeecc
Confidence 9999998 5 78999999999999999987554 443 458899999988765 7888885 69
Q ss_pred cEEEEEeeCCC-CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-c
Q 010801 349 NLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-G 426 (501)
Q Consensus 349 ~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 426 (501)
+|++||+++ . +++.++.+|...+ ..+. ..+++|++++.|++|++||..+++.+ .++++ |
T Consensus 393 ~IkvWdl~~-~~~c~~tl~~h~~~v---------------~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~-~~~~~~~ 453 (537)
T KOG0274|consen 393 TIKVWDLRT-KRKCIHTLQGHTSLV---------------SSLL--LRDNFLVSSSADGTIKLWDAEEGECL-RTLEGRH 453 (537)
T ss_pred ceEeecCCc-hhhhhhhhcCCcccc---------------cccc--cccceeEeccccccEEEeecccCcee-eeeccCC
Confidence 999999996 6 8999999998764 2333 36789999999999999999999665 77777 6
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
...+..++... .. ++.++.++. ++|+..
T Consensus 454 ~~~v~~l~~~~----~~-----il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 454 VGGVSALALGK----EE-----ILCSSDDGSVKLWDLR 482 (537)
T ss_pred cccEEEeecCc----ce-----EEEEecCCeeEEEecc
Confidence 78888877761 11 788888888 999433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=192.48 Aligned_cols=293 Identities=16% Similarity=0.223 Sum_probs=201.6
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+++|. +.|++++|+ .||+.|++++.|++|++|++++.....
T Consensus 80 ~~LKgH~------------~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~e----------------------- 122 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKE----------------------- 122 (420)
T ss_pred hhhhccC------------CceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhh-----------------------
Confidence 5678898 889999998 899999999999999999998744221
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCC--
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD-- 250 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~-- 250 (501)
.+|++.. -.-+..+.+.|+||-+-++.+ ...++++|.+....
T Consensus 123 --------------------------------Hr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 123 --------------------------------HRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred --------------------------------hhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 1222221 112245678999998877664 78899999775321
Q ss_pred -eeeeeeecCCCCC-CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 251 -QCFNIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 251 -~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
.....+......+ ..|...+-.+-....+ .+|++++.|..|.+|+++ ++.. ..++. ...
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idt-------------nq~ 229 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDT-------------NQS 229 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeecc-------------ccc
Confidence 1111111110111 3455666666666666 999999999999999999 4333 22222 123
Q ss_pred ceeEEEEeeCCCEEEEEcC-CcEEEEEeeCC-------CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMD-------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
.-...+.||+|++|+++.. -.|++|.+-.. -+.+..+++|...+ +.++|+++.+.++
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------------~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------------LAAAFSNSSTRAV 294 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---------------eeeeeCCCcceeE
Confidence 4567889999999998875 78999987431 12456778898876 7999999999999
Q ss_pred EEeCCCeEEEEecCCCCcc---e-------EEEecccCcccceeeccCCccccCccceeeeecccceeeccc--cCCcc-
Q 010801 401 TGSYSNLLRIFSHGVGSAG---G-------ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS--SGHHE- 467 (501)
Q Consensus 401 s~~~dg~i~iwd~~~~~~~---~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~--~~~~~- 467 (501)
+.|.||+++|||++-.... . ..+.+..+....+..+| .|.. |+.......+++.. ++...
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP--~g~~-----lA~s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP--SGDS-----LAVSFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC--CCcE-----EEeecCCceEEEEcccCccchh
Confidence 9999999999998642111 1 12223333444777777 5555 55555444455522 22221
Q ss_pred cccccCCCeEEEEEccCCCEEEEeeCCeEEEE
Q 010801 468 LSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 499 (501)
Q Consensus 468 ~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 499 (501)
...-|+..|.+++|+|+|+++|++++..+.++
T Consensus 368 ~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 368 LEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred HHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 22357889999999999999999999887775
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=193.61 Aligned_cols=250 Identities=17% Similarity=0.282 Sum_probs=190.6
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCcee
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (501)
.|.+.+.|. ...|.+.|++++.+ |.|+|+|+.|-+|+|||..+...+
T Consensus 30 ~~~l~~lF~------~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql------------------------- 76 (362)
T KOG0294|consen 30 KPTLKPLFA------FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL------------------------- 76 (362)
T ss_pred ceeeecccc------ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-------------------------
Confidence 456666655 34689999999986 899999999999999999876553
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
..+-.|. +.|+++.|.+......|++|+.||.|.+|+...-.+...
T Consensus 77 --g~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s-------------------- 122 (362)
T KOG0294|consen 77 --GILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS-------------------- 122 (362)
T ss_pred --cceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee--------------------
Confidence 5677788 999999998433334899999999999999887654433
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
+ .+|.+.|+.++.+|.+++.++- .|+.+++||+-.++.
T Consensus 123 ----------------------------------------l-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 123 ----------------------------------------L-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred ----------------------------------------e-cccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 2 7899999999999999988876 999999999985543
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.. ... + ....+.+.|+|.| .+++.+..+ .|-+|.+.+..+. ..... +..+.
T Consensus 162 a~-v~~-----L---~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~--------------~~r~l 212 (362)
T KOG0294|consen 162 AF-VLN-----L---KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIEN--------------PKRIL 212 (362)
T ss_pred ce-eec-----c---CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhc--------------cccce
Confidence 32 211 1 1223459999999 877777665 5889988876443 22221 13466
Q ss_pred EEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEE--EcCCCcEEEEEeCCCeE
Q 010801 332 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYSNLL 408 (501)
Q Consensus 332 ~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~s~~~dg~i 408 (501)
++.|... ..|++| +++.|.+||... ..+...+.+|...+ -++. -.|++.+|+++|.||.|
T Consensus 213 ~~~~l~~-~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RV---------------K~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 213 CATFLDG-SELLVGGDNEWISLKDTDS-DTPLTEFLAHENRV---------------KDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred eeeecCC-ceEEEecCCceEEEeccCC-Cccceeeecchhhe---------------eeeEEEecCCceEEEEeccCceE
Confidence 7777654 455555 569999999985 88999999999876 3444 35678899999999999
Q ss_pred EEEecCCC
Q 010801 409 RIFSHGVG 416 (501)
Q Consensus 409 ~iwd~~~~ 416 (501)
++||++..
T Consensus 276 ~vWd~~~~ 283 (362)
T KOG0294|consen 276 KVWDIDME 283 (362)
T ss_pred EEEEcccc
Confidence 99999865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=206.06 Aligned_cols=265 Identities=15% Similarity=0.243 Sum_probs=196.9
Q ss_pred cccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
+.|.+.|+.+..-|.. ..||+++..+.|.|||..+.... .....+.++...+.||.
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-----------------~~~~~~~~Pdl~L~gH~------ 177 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-----------------PKASGECRPDLRLKGHE------ 177 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-----------------ccccccCCCceEEEeec------
Confidence 5689999999999954 67788889999999998865432 00011455667899998
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.=+.++|++ .....|++++.|++|++||+........
T Consensus 178 ------~eg~glsWn~-~~~g~Lls~~~d~~i~lwdi~~~~~~~~----------------------------------- 215 (422)
T KOG0264|consen 178 ------KEGYGLSWNR-QQEGTLLSGSDDHTICLWDINAESKEDK----------------------------------- 215 (422)
T ss_pred ------cccccccccc-ccceeEeeccCCCcEEEEeccccccCCc-----------------------------------
Confidence 4467799985 4556889999999999999986542100
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCC-CeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~ 264 (501)
...+...+ .+|...|..++|++-. .+|+++ +|+.+.|||+++. .+.. ....
T Consensus 216 ------------------~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~-------~~~~ 269 (422)
T KOG0264|consen 216 ------------------VVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS-------HSVK 269 (422)
T ss_pred ------------------cccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc-------cccc
Confidence 01122223 8999999999999854 455555 9999999999952 1222 2468
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~ 343 (501)
+|.+.|.|++|+|.+..+||+|+.|++|.+||+|+.+.. ...+ .+|...|..+.|+|... .||
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~-------------e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHTF-------------EGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---ceec-------------cCCCcceEEEEeCCCCCceeE
Confidence 899999999999998789999999999999999986532 1333 45789999999999765 555
Q ss_pred EE-cCCcEEEEEeeCCCCc-------------eeEeeccccccccccccCCCCCcceeeEEEEcCCCcE-EEEEeCCCeE
Q 010801 344 SR-DYMNLKLWDIRMDSTP-------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLL 408 (501)
Q Consensus 344 ~~-~~~~i~lwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~s~~~dg~i 408 (501)
++ .|+.+.|||+..-+.. +..-.||...+ ..+.|+|+..+ |++.+.|+.+
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceE
Confidence 44 5799999998643222 23334455443 68999998765 6688999999
Q ss_pred EEEecCC
Q 010801 409 RIFSHGV 415 (501)
Q Consensus 409 ~iwd~~~ 415 (501)
.||++..
T Consensus 399 qIW~~s~ 405 (422)
T KOG0264|consen 399 QIWQMAE 405 (422)
T ss_pred EEeeccc
Confidence 9999874
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=216.32 Aligned_cols=279 Identities=20% Similarity=0.319 Sum_probs=218.5
Q ss_pred cccccceE---EEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 29 LQDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 29 ~~h~~~v~---~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
.+|...|. ++..+. .++||+||++||.|++|+...... .++..+...++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---------------------~~s~~~~asme~Hs--- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---------------------EPSTPYIASMEHHS--- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccC---------------------CcccchhhhhhhhH---
Confidence 36777777 566654 677899999999999999874432 22333667888898
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|+++..+ .+++-|+++|.|-+|++|+...+.
T Consensus 74 ---------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~------------------------------------ 106 (735)
T KOG0308|consen 74 ---------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDN------------------------------------ 106 (735)
T ss_pred ---------hHHhhHHhh--cCCCceEEecCCceEEEeecccCc------------------------------------
Confidence 889999987 788899999999999999987653
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEe-cCCCCEEEEE-cCCeEEEEECCCCCe-eeeeeec-CC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDM-KP 260 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~-~~ 260 (501)
..|++++ ..|.+-|.|+++ .++..++|+| -|+.|.+||++++.. .+...+. ..
T Consensus 107 ----------------------~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 107 ----------------------TFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ----------------------chhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 1133333 689999999999 7888888898 999999999995422 2211111 11
Q ss_pred CCCC-CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 261 SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 261 ~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
..+. ++...|++++.++.| .+|++|+.++.+++||.++.+ ++++. .||...|..+..++||
T Consensus 164 ~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~------kimkL-----------rGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK------KIMKL-----------RGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc------ceeee-----------eccccceEEEEEcCCC
Confidence 2344 888999999999999 999999999999999999976 44443 5789999999999999
Q ss_pred CEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 340 QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 340 ~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
..++++ +||+|++||+.. .+++.++..|...+ +++..+|+-..+.+|+.||.|..=|+.+...
T Consensus 226 t~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred CeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 999987 579999999985 89999999998875 8999999999999999999999999988533
Q ss_pred ceEEEecccCcccceeec
Q 010801 419 GGITVEAGKNENRKPILQ 436 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~ 436 (501)
. ..+.....++..+...
T Consensus 290 ~-tlick~daPv~~l~~~ 306 (735)
T KOG0308|consen 290 S-TLICKEDAPVLKLHLH 306 (735)
T ss_pred h-eEeecCCCchhhhhhc
Confidence 3 3344444444444443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=197.25 Aligned_cols=353 Identities=13% Similarity=0.155 Sum_probs=237.0
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|.||+|.++|+ ++||..+|.|.||+..+.+ ..+...+|.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~---------------------------~~k~~~aH~---------- 287 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR---------------------------ISKQVHAHD---------- 287 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce---------------------------EEeEeeecC----------
Confidence 46799999999998 6799999999999975433 334445898
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.|.+++.. .+| .|++|+.|+.|..||-.-. +..+...++. .+.+..+...... +..|..
T Consensus 288 --ggv~~L~~l--r~G-tllSGgKDRki~~Wd~~y~---k~r~~elPe~---------~G~iRtv~e~~~d--i~vGTt- 347 (626)
T KOG2106|consen 288 --GGVFSLCML--RDG-TLLSGGKDRKIILWDDNYR---KLRETELPEQ---------FGPIRTVAEGKGD--ILVGTT- 347 (626)
T ss_pred --CceEEEEEe--cCc-cEeecCccceEEecccccc---ccccccCchh---------cCCeeEEecCCCc--EEEeec-
Confidence 999999986 555 5566999999999992211 1111111110 0111111111111 111110
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+.|-.=.++.. .... ..+|....+.++.+|+..+++++ .|+.+++|+ . .+..... ....++
T Consensus 348 -rN~iL~Gt~~~~----f~~~-v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d~~ 410 (626)
T KOG2106|consen 348 -RNFILQGTLENG----FTLT-VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIEDPA 410 (626)
T ss_pred -cceEEEeeecCC----ceEE-EEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecCce
Confidence 111111111111 1111 16899999999999999999998 999999999 3 3333322 134678
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
.++.|+|.| .++.|+..|...+.|..+..+. .+-.. ..+++.+.|+|+|.+||.|+ |+.
T Consensus 411 ~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv----~~~~d--------------~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 411 ECADFHPSG--VVAVGTATGRWFVLDTETQDLV----TIHTD--------------NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred eEeeccCcc--eEEEeeccceEEEEecccceeE----EEEec--------------CCceEEEEEcCCCCEEEEecCCCe
Confidence 999999997 8999999999999999886443 22221 36899999999999999997 599
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc--eE------
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GI------ 421 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~------ 421 (501)
|+||.+..++.......-+.. . .++.+.||+|+++|.+.+.|-.|..|....-+.. .+
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~g-s-------------~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t 536 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSG-S-------------PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWAT 536 (626)
T ss_pred EEEEEECCCCcEEEEeeeecC-c-------------eeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeee
Confidence 999999875655544433332 1 1279999999999999999999999943321111 00
Q ss_pred --------EE-ecccCcccceeeccCCccccCccceeeeecccce-eecccc-----CCcccccccCCCeEEEEEccCCC
Q 010801 422 --------TV-EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-----GHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 422 --------~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~-----~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
.+ -.+...+..++.+. ..++ +|+|...|+ ++++-. -...++.+|++.|++++|..+..
T Consensus 537 ~~c~lGF~v~g~s~~t~i~a~~rs~--~~~~-----lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~ 609 (626)
T KOG2106|consen 537 YTCTLGFEVFGGSDGTDINAVARSH--CEKL-----LASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS 609 (626)
T ss_pred eEEEEEEEEecccCCchHHHhhhhh--hhhh-----hhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc
Confidence 00 12334455555555 5666 899999999 999332 34456678999999999988776
Q ss_pred EEEE-eeCCeEEEEe
Q 010801 487 LIAC-ANGNSLFFHY 500 (501)
Q Consensus 487 ~la~-~~~~~~~i~~ 500 (501)
.|.+ +.+..+..|.
T Consensus 610 ~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 610 HLISTGKDTSIMQWR 624 (626)
T ss_pred eEEecCCCceEEEEE
Confidence 6554 4477799885
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=188.98 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=198.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-+|.+.|..+...-.|+.|||++.|++|+||....+.. ...+.+|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~------- 56 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHS------- 56 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCC-------
Confidence 36899999999999999999999999999999886532 24778999999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|+.++|..-.-|.+|++++.||.|.||+-++++..+..++
T Consensus 57 -----GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~--------------------------------- 98 (299)
T KOG1332|consen 57 -----GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH--------------------------------- 98 (299)
T ss_pred -----CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh---------------------------------
Confidence 999999998334689999999999999999988864443221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCe-eeeeeecCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMD 264 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 264 (501)
..|...|++++|.|. |-.|+++ .||.|.+.+.+..+. .... ...
T Consensus 99 --------------------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k------i~~ 146 (299)
T KOG1332|consen 99 --------------------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK------IVF 146 (299)
T ss_pred --------------------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh------hhh
Confidence 589999999999885 5677788 999999999885522 2211 257
Q ss_pred CcccceEEEEEecC---C----------CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 265 DLTEVITSAEFHPI---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 265 ~~~~~v~~v~~~p~---~----------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.|.-.|++++|.|. | .+.|++|+.|..|+||+..+++-. ..+ ++.+|...|.
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~--~e~-------------~l~~H~dwVR 211 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK--LER-------------TLEGHKDWVR 211 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh--hhh-------------hhhhcchhhh
Confidence 79999999999986 2 145999999999999999876311 112 2456889999
Q ss_pred EEEEeeCC----CEEEEEc-CCcEEEEEeeCCCCcee--EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 332 DIKFANDG----QHLLSRD-YMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 332 ~~~~sp~~----~~l~~~~-~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
.++|.|.- .+||+++ ||++.||-.+.+..+-. .+......+ ..++||+.|++|+.++.
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~---------------w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVV---------------WRVSWSLSGNILAVSGG 276 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcce---------------EEEEEeccccEEEEecC
Confidence 99999963 4788886 59999998764322211 122222222 79999999999999999
Q ss_pred CCeEEEEecC
Q 010801 405 SNLLRIFSHG 414 (501)
Q Consensus 405 dg~i~iwd~~ 414 (501)
|+.|.+|.-.
T Consensus 277 dNkvtlwke~ 286 (299)
T KOG1332|consen 277 DNKVTLWKEN 286 (299)
T ss_pred CcEEEEEEeC
Confidence 9999999754
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=208.27 Aligned_cols=406 Identities=14% Similarity=0.139 Sum_probs=257.4
Q ss_pred cccccceEEEEEccCCC---EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 29 LQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
-+|..+|+|+.|-|+.+ ++++|+.|++|++|.++.. ....+..+++|.
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~-------------------------~~~~i~~~~g~~---- 101 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE-------------------------YLIKIYTIQGHC---- 101 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh-------------------------heEEEEeecCcc----
Confidence 36999999999999887 8999999999999999843 234667788888
Q ss_pred hccccccccceeEEEEeecCCCCEEEE-eeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCC-CCc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFA 183 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s-~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 183 (501)
+.++++. +.....+ .+.|+++.+||.+..+........... ..--++..+..+ ...
T Consensus 102 ----------~~~~cv~---a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~---------k~~ipLcL~~~~~~~~ 159 (764)
T KOG1063|consen 102 ----------KECVCVV---ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEI---------KEAIPLCLAALKNNKT 159 (764)
T ss_pred ----------eeEEEEE---eeeeEEEeeccCceEEEeecCCCceeeehheehhh---------hhHhhHHHhhhccCCc
Confidence 4455553 2222333 368999999999665522221111100 000011111111 111
Q ss_pred -ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC---EEEEE-cCCeEEEEECCCCC--------
Q 010801 184 -HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSA-DDLRINLWNLEISD-------- 250 (501)
Q Consensus 184 -~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~---~l~~~-~d~~i~iwd~~~~~-------- 250 (501)
.++.|. .+..+.++.-.. ...+....+ .+|.+.|.+++|...+. +++++ .|..|+||.+...+
T Consensus 160 ~lla~Gg--s~~~v~~~s~~~-d~f~~v~el-~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e 235 (764)
T KOG1063|consen 160 FLLACGG--SKFVVDLYSSSA-DSFARVAEL-EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERE 235 (764)
T ss_pred EEEEecC--cceEEEEeccCC-cceeEEEEe-eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccc
Confidence 112221 133444444442 122333334 89999999999976443 56677 99999999876433
Q ss_pred ------------eeeeee--ecCC-CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc-----------ccc
Q 010801 251 ------------QCFNIV--DMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-----------LCD 304 (501)
Q Consensus 251 ------------~~~~~~--~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~-----------~~~ 304 (501)
.....+ .+.. .-+.+|...|.++.|+|.+ ..|++++.|.++.+|...+.. ...
T Consensus 236 ~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg 314 (764)
T KOG1063|consen 236 DSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG 314 (764)
T ss_pred cccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence 011011 0111 1235999999999999998 899999999999999765531 100
Q ss_pred c-----------------------ccceeec-ccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEee---
Q 010801 305 H-----------------------SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR--- 356 (501)
Q Consensus 305 ~-----------------------~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~--- 356 (501)
. ..+.+.. .+........+.||...|.+++|+|.|+||++.+ |.+-|||-.-
T Consensus 315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence 0 0011110 0111122234679999999999999999998764 6777766321
Q ss_pred -------C------------------------CCCceeEeeccccc-----------------------cc---------
Q 010801 357 -------M------------------------DSTPVATFKIHEHL-----------------------RP--------- 373 (501)
Q Consensus 357 -------~------------------------~~~~~~~~~~~~~~-----------------------~~--------- 373 (501)
. +.+.++.|...... ++
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 0 00011111100000 00
Q ss_pred ---------------------cccc---------------------cCCCCCcceeeEEEEcCCCcEEEEEeCC-----C
Q 010801 374 ---------------------KLCD---------------------LYNNDSIFDKFECSVSGDGLHFATGSYS-----N 406 (501)
Q Consensus 374 ---------------------~~~~---------------------~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----g 406 (501)
..+. +|.. -+.+++++.+|+++++|+++.. -
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH--GyEv~~l~~s~~gnliASaCKS~~~ehA 552 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH--GYEVYALAISPTGNLIASACKSSLKEHA 552 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC--ceeEEEEEecCCCCEEeehhhhCCccce
Confidence 0000 1111 1146899999999999998764 3
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc------ccccccCCCeEEE
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH------ELSYNLSSKLLHL 479 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~------~~~~~~~~~i~~~ 479 (501)
.|++|+..+-.. .+.++.|.-.|+.++|+| ++++ |.+.++|+. .+|...+.. .....|+.-|.+.
T Consensus 553 vI~lw~t~~W~~-~~~L~~HsLTVT~l~FSp--dg~~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 553 VIRLWNTANWLQ-VQELEGHSLTVTRLAFSP--DGRY-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC 624 (764)
T ss_pred EEEEEeccchhh-hheecccceEEEEEEECC--CCcE-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence 589999887633 368999999999999999 8999 999999999 999443322 2355789999999
Q ss_pred EEccCCCEEEEeeC-CeEEEEe
Q 010801 480 AWHPTTNLIACANG-NSLFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~~-~~~~i~~ 500 (501)
+|+|++.++|+++. ..+.||.
T Consensus 625 sW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 625 SWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccCcccceeEEecCCceEEEEe
Confidence 99999999999995 4588885
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=210.57 Aligned_cols=375 Identities=13% Similarity=0.123 Sum_probs=274.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.+.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+ .+|+.-.
T Consensus 200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil---------------------------~sFk~d~-------- 244 (910)
T KOG1539|consen 200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL---------------------------MSFKQDW-------- 244 (910)
T ss_pred ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE---------------------------EEEEccc--------
Confidence 45789999999999999999999999999999988653 5565444
Q ss_pred cccccceeEEEEeecCCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|+.++|. .||..+ ++|+..|.+-+||++..+.+...... +.+.+....+-+....+.+.
T Consensus 245 ----g~VtslSFr--tDG~p~las~~~~G~m~~wDLe~kkl~~v~~na------------h~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 245 ----GRVTSLSFR--TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA------------HYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred ----cceeEEEec--cCCCeeEEeccCCceEEEEEcCCCeeeeeeecc------------ccCCcccceecCCCceEeec
Confidence 889999996 677655 45567799999999988776654321 12233333333333333333
Q ss_pred eeccCcceEEEeccCcee-eeeeEeecCCcccceEEEEec-CCCCEEEEE-cCCeEEEEECCCC----------------
Q 010801 189 EWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEIS---------------- 249 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~-~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~iwd~~~~---------------- 249 (501)
. .|..+++|-.+...- .+.++.. .+|..+..++.|. .+|..+.++ .|++.+.+++...
T Consensus 307 ~--~DnSlk~~vfD~~dg~pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 307 G--ADNSLKVWVFDSGDGVPRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred c--CCCceeEEEeeCCCCcchheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 3 256666666653321 2334433 7888888888886 567777776 7777666654320
Q ss_pred -------------------------------------CeeeeeeecC----------CCCCCCcccceEEEEEecCCCcE
Q 010801 250 -------------------------------------DQCFNIVDMK----------PSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 250 -------------------------------------~~~~~~~~~~----------~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
.....+++.+ +..+..-...+++++.++.| ++
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF 462 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NF 462 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ce
Confidence 0001111111 12222234678999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCc
Q 010801 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~ 361 (501)
.+.|+..|.|-+|++++|-.. ..+.. -+.|..+|++++...-++.+++++ +|.+.+||... ..+
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l 527 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVL 527 (910)
T ss_pred EEEeccCCeEEEEEcccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cce
Confidence 999999999999999988543 22321 135789999999998888888875 69999999975 666
Q ss_pred eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCcc
Q 010801 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (501)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 441 (501)
+..+...... ..+..+.....++.+..|-.|+++|+.+. .+...+.+|.+.++.++|+| +|
T Consensus 528 ~~~l~l~~~~----------------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~--Dg 588 (910)
T KOG1539|consen 528 KKSLRLGSSI----------------TGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSP--DG 588 (910)
T ss_pred eeeeccCCCc----------------ceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCC--CC
Confidence 6666543332 46777878889999999999999999887 56699999999999999999 89
Q ss_pred ccCccceeeeecccce-eecccc-CCcccccccCCCeEEEEEccCCCEEEEee--CCeEEEEe
Q 010801 442 RRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY 500 (501)
Q Consensus 442 ~~~~~~~l~~~~~~~~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~--~~~~~i~~ 500 (501)
+. |++.+.|+. ++|+.. ....+......+++.+.|||.|.+||++. .+++|+|.
T Consensus 589 rW-----lisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 589 RW-----LISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cE-----EEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99 999999999 999544 34555667788999999999999999998 46899995
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-25 Score=202.20 Aligned_cols=325 Identities=14% Similarity=0.162 Sum_probs=243.2
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|.+|||+.+.+.||.+-.||.|-||++..+ +-....+.+++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------w~~~~vi~g~~---------- 68 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------WFLEPVIHGPE---------- 68 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------ceeeEEEecCC----------
Confidence 578999999999999999999999999998853 44556777776
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+..|.+++|+ ++.+|.+.+.+|.|.-||+.+++.+...
T Consensus 69 -drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~-------------------------------------- 106 (691)
T KOG2048|consen 69 -DRSIESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNI-------------------------------------- 106 (691)
T ss_pred -CCceeeEEEc---cCCeEEeecCCceEEEEecccCceeEEe--------------------------------------
Confidence 3889999996 6778899999999999999998755433
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
....+.|++++.+|.+..++.| +||.+..++...+.-.... .+....+.|
T Consensus 107 -----------------------d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRv 157 (691)
T KOG2048|consen 107 -----------------------DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRV 157 (691)
T ss_pred -----------------------cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccccceE
Confidence 4667899999999999999999 9998888888744333332 255567899
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc-ceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-C
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~ 348 (501)
.+++|+|++ ..++.|+.||.|++||...+....... ++... . ++-..-|+++.|-.++ .|++|+. |
T Consensus 158 Lslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l-~---------k~~~~iVWSv~~Lrd~-tI~sgDS~G 225 (691)
T KOG2048|consen 158 LSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL-S---------KREPTIVWSVLFLRDS-TIASGDSAG 225 (691)
T ss_pred EEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccc-c---------cCCceEEEEEEEeecC-cEEEecCCc
Confidence 999999999 889999999999999999876432000 01111 0 0013468888888666 5777754 9
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc---eEEEec
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEA 425 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~ 425 (501)
+|.+||... +.+++.+..|...+ .+++..+++.++++++.|+.|..|...+.... ......
T Consensus 226 ~V~FWd~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 226 TVTFWDSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred eEEEEcccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 999999986 99999999888865 79999999999999999999999998876442 233446
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-e------------------------------------------eccc
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H------------------------------------------ENSS 462 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------------------------------------------iw~~ 462 (501)
|...+++++..+. . +.+|+.|.. . +|..
T Consensus 290 h~hdvrs~av~~~----~-----l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN----A-----LISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred Ccccceeeeeecc----e-----EEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceec
Confidence 7777777777653 1 555554433 2 2211
Q ss_pred cCCcc-----------cccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 463 SGHHE-----------LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 463 ~~~~~-----------~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+.... ....-...|.+-+.||+|++||.++-..++||.
T Consensus 361 GS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 361 GSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR 409 (691)
T ss_pred cCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence 11100 011223478899999999999999966666653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=187.80 Aligned_cols=275 Identities=14% Similarity=0.183 Sum_probs=211.6
Q ss_pred EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecC
Q 010801 46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125 (501)
Q Consensus 46 ~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~ 125 (501)
.|++|++...|.=+++.-.... + .....|...+.-.+++|. ++|++++.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~--------------~-~~s~~~~l~~lF~~~aH~------------~sitavAVs--- 52 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKG--------------C-TDSVKPTLKPLFAFSAHA------------GSITALAVS--- 52 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccc--------------c-ccccceeeeccccccccc------------cceeEEEec---
Confidence 4677888777766665532100 0 122234555566788898 999999984
Q ss_pred CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCce
Q 010801 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (501)
Q Consensus 126 ~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 205 (501)
+.++++|+.|.+|+|||+.........
T Consensus 53 -~~~~aSGssDetI~IYDm~k~~qlg~l---------------------------------------------------- 79 (362)
T KOG0294|consen 53 -GPYVASGSSDETIHIYDMRKRKQLGIL---------------------------------------------------- 79 (362)
T ss_pred -ceeEeccCCCCcEEEEeccchhhhcce----------------------------------------------------
Confidence 789999999999999999876533322
Q ss_pred eeeeeEeecCCcccceEEEEecCCCC--EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcE
Q 010801 206 HARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
..|.+.|+++.|.+.-. .|++| +||.|.+|+.. .-.++.. +.+|.+.|+.++.+|.+ ++
T Consensus 80 ---------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~s-------lK~H~~~Vt~lsiHPS~-KL 141 (362)
T KOG0294|consen 80 ---------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKS-------LKAHKGQVTDLSIHPSG-KL 141 (362)
T ss_pred ---------eccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeee-------ecccccccceeEecCCC-ce
Confidence 57899999999988764 78888 99999999998 4455553 78999999999999999 99
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCce
Q 010801 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 362 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~ 362 (501)
-++.+.|+.+++||+-.++.. .+... ....+.+.|+|.|.+++....+.|-+|.+.. .+..
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~ 202 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVF 202 (362)
T ss_pred EEEEcCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHh
Confidence 999999999999999888643 22222 2234559999999988887778999999975 5554
Q ss_pred eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccc
Q 010801 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 442 (501)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 442 (501)
.++...... .++.|- ++..|++|+.|+.|++||.+.. .....+.+|...|..+.+...+.+.
T Consensus 203 ~~i~~~~r~----------------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 203 REIENPKRI----------------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred hhhhccccc----------------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCce
Confidence 444433211 345554 6678999999999999999886 4558999999999999987766777
Q ss_pred cCccceeeeecccce-eecccc
Q 010801 443 RSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 443 ~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+ |++.+.||. ++|+.+
T Consensus 265 ~-----lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 265 Y-----LVTASSDGFIKVWDID 281 (362)
T ss_pred E-----EEEeccCceEEEEEcc
Confidence 7 999999999 999555
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=206.38 Aligned_cols=362 Identities=15% Similarity=0.162 Sum_probs=239.1
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccc
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (501)
..++.|++....|.+...|..++|||+..-... .+. ..+--|. .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv-----------------------gk~-~s~lyHS------------~ 370 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV-----------------------GKC-SSMLYHS------------A 370 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccc-----------------------cce-eeeeecc------------c
Confidence 457889999999999999999999999865431 112 1233455 5
Q ss_pred ceeEEEEee----cC-----CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCC-CCCCcc
Q 010801 115 KINRVRWCA----AP-----NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-PPSFAH 184 (501)
Q Consensus 115 ~V~~v~~~~----~~-----~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 184 (501)
.|+.|.-.| ++ ....|++++.|++||+|++..+....+..-+.. ........+ .....+
T Consensus 371 ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil-----------s~~l~ki~y~d~~~q~ 439 (1080)
T KOG1408|consen 371 CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL-----------SANLSKIPYEDSTQQI 439 (1080)
T ss_pred eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc-----------hhhhhcCccccCchhh
Confidence 566665543 01 123589999999999999986432222111100 000000001 111111
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
+.+.. .-++|... ... ......+.+++.+|+|++|++| ..|.+++|++..-.... .+
T Consensus 440 ~~d~~------~~~fdka~-------~s~-~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~--------~~ 497 (1080)
T KOG1408|consen 440 MHDAS------AGIFDKAL-------VST-CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC--------FM 497 (1080)
T ss_pred hhhcc------CCcccccc-------hhh-cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh--------he
Confidence 11110 01111111 000 3445689999999999999999 99999999998433322 27
Q ss_pred CCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--
Q 010801 264 DDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-- 339 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-- 339 (501)
+.|...|.|+.|+.- +.++|++++.|+.|++||....-... +. +.+|...|+++.|.-+|
T Consensus 498 eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~---qt-------------ld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 498 EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV---QT-------------LDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh---hh-------------hcccccceeEEEEeecCCc
Confidence 899999999999842 22689999999999999987542221 33 34578999999999877
Q ss_pred CEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 340 QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 340 ~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
..++++ .|..|. |+.......-..+.-|..... -..+++++..|..+++++++.|..|+||++++++.
T Consensus 562 ~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~----------ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 562 RKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLS----------KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eEEEeccCchhhh-eehhccccCceeccccccccc----------cceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 455554 455544 443211111222222222221 11126899999999999999999999999999955
Q ss_pred ceEEEecccC---cccceeeccCCccccCccceeeeecccce-eec--cccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 419 GGITVEAGKN---ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 419 ~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
. +.|++..+ ....+..-| .|-+ +++.-.|+. .++ ..++.+..+.+|+.-|+.+.|.+|-+.|.+++
T Consensus 631 ~-k~FKgs~~~eG~lIKv~lDP--SgiY-----~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 631 V-KSFKGSRDHEGDLIKVILDP--SGIY-----LATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred e-eeecccccCCCceEEEEECC--CccE-----EEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec
Confidence 4 77776544 344455555 6666 888888888 777 77789999999999999999999999988887
Q ss_pred CCe-EEEEe
Q 010801 493 GNS-LFFHY 500 (501)
Q Consensus 493 ~~~-~~i~~ 500 (501)
+|+ ||||.
T Consensus 703 gDgCIFvW~ 711 (1080)
T KOG1408|consen 703 GDGCIFVWK 711 (1080)
T ss_pred CCceEEEEE
Confidence 555 99996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=188.51 Aligned_cols=281 Identities=14% Similarity=0.187 Sum_probs=219.6
Q ss_pred eeeccCCcchhhccccccccceeEEEEee-cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~-~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
.+-.||+ .+|-.++|+| .|+|-+|++++.|+.-.+-+-++|..+-.+
T Consensus 8 l~c~ght------------rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-------------------- 55 (334)
T KOG0278|consen 8 LTCHGHT------------RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-------------------- 55 (334)
T ss_pred eEEcCCC------------cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee--------------------
Confidence 3457888 8999999997 567888889999988777666666544432
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.+|.+.|++.+.+.+....+++ .|-+-++||.-++...
T Consensus 56 -----------------------------------------eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 56 -----------------------------------------EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred -----------------------------------------eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 7999999999999988888888 9999999998855543
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
. ...|..-|.+++|+.|. +.|++|+.+..+|+||+...+-.. + .+.+|++.|..
T Consensus 95 h---------sf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App---~-------------E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 95 H---------SFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPP---K-------------EISGHTGGIRT 148 (334)
T ss_pred h---------hhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCc---h-------------hhcCCCCccee
Confidence 3 23477889999999998 999999999999999997653211 1 13568899999
Q ss_pred EEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEE
Q 010801 333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 333 ~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iw 411 (501)
+.|....+.|++.. |++||+||.++ ++.++++...... +++..+++|++|.++ ..+.|.+|
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~~s~V----------------tSlEvs~dG~ilTia-~gssV~Fw 210 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEFNSPV----------------TSLEVSQDGRILTIA-YGSSVKFW 210 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEecc-CcEEEEEecCCCC----------------cceeeccCCCEEEEe-cCceeEEe
Confidence 99999888888765 59999999998 8888888755443 689999999876554 55789999
Q ss_pred ecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec--cccCCccc-ccccCCCeEEEEEccCCCE
Q 010801 412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL-SYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 412 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~~~~~-~~~~~~~i~~~~~sp~~~~ 487 (501)
|..+...+ +.++.. -.|.+....|. ..+ ++.|+.|.. ..+ .+++.+.. ..+|-++|.++.|+|||..
T Consensus 211 daksf~~l-Ks~k~P-~nV~SASL~P~--k~~-----fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 211 DAKSFGLL-KSYKMP-CNVESASLHPK--KEF-----FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ccccccce-eeccCc-cccccccccCC--Cce-----EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce
Confidence 99876333 333322 24556666664 344 788988888 665 66666666 4789999999999999999
Q ss_pred EEEeeCCe-EEEEeC
Q 010801 488 IACANGNS-LFFHYA 501 (501)
Q Consensus 488 la~~~~~~-~~i~~~ 501 (501)
-|+|+.|+ +++|+.
T Consensus 282 yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQT 296 (334)
T ss_pred eeccCCCceEEEEEe
Confidence 99999665 999973
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=187.89 Aligned_cols=268 Identities=12% Similarity=0.133 Sum_probs=201.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecccc-ceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.|.+|+||| ....+++.+|.|++||+|+++.. .....
T Consensus 28 DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~k---------------------------------------- 66 (347)
T KOG0647|consen 28 DSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPK---------------------------------------- 66 (347)
T ss_pred cchheeEecc-ccCceEEecccCCceEEEEEecCCcccch----------------------------------------
Confidence 8899999996 35567778899999999999863 32110
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
-...|.++|.+++|+.||..+++| .|+.+++||+.+ ++..+ +..|.++|.
T Consensus 67 --------------------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-~Q~~~--------v~~Hd~pvk 117 (347)
T KOG0647|consen 67 --------------------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-GQVSQ--------VAAHDAPVK 117 (347)
T ss_pred --------------------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-CCeee--------eeeccccee
Confidence 015889999999999999999999 999999999994 45443 678999999
Q ss_pred EEEEecCC-CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 272 SAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 272 ~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
.+.|-+.. ...|++|+.|.+|+.||.|..... ..+.. ...+.++..- ...++.+ .++.
T Consensus 118 t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----~t~~L--------------PeRvYa~Dv~--~pm~vVata~r~ 177 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----ATLQL--------------PERVYAADVL--YPMAVVATAERH 177 (347)
T ss_pred EEEEecCCCcceeEecccccceeecccCCCCee----eeeec--------------cceeeehhcc--CceeEEEecCCc
Confidence 99998765 138999999999999999987544 33333 2455555443 2345555 4599
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC-cceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~ 428 (501)
|.+|+++.+......+...-. +.+.+++..+|....+.|+-+|.+.|..++.+. ....+++.|+.
T Consensus 178 i~vynL~n~~te~k~~~SpLk--------------~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLK--------------WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred EEEEEcCCCcchhhhhcCccc--------------ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 999999753332222222211 122688888888878999999999999998742 33477888874
Q ss_pred ---------cccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 429 ---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 429 ---------~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
.|..++|.|. -| . |++.+.||. ..|+-+ ..+.....+.++|++.+|+.+|.++|.+.
T Consensus 244 ~~~~~~~VYaVNsi~FhP~-hg-t-----lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPV-HG-T-----LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCCCCCceEEecceEeecc-cc-e-----EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 5778899984 22 2 899999999 999444 44556678899999999999999999875
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=176.22 Aligned_cols=253 Identities=16% Similarity=0.261 Sum_probs=188.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
-|.+.|+|.+|||+|++||+|+.|.+|++..+....+. -.-...+|.-|.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~----------------------~~g~dle~nmhd-------- 136 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN----------------------ATGHDLEFNMHD-------- 136 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEeccccccc----------------------ccCcceeeeecC--------
Confidence 47899999999999999999999999999877654432 000112344455
Q ss_pred cccccceeEEEEeec--CCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 110 LEIEEKINRVRWCAA--PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~--~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|..++|... ..+..|++++ .|..|++-|-..++-.
T Consensus 137 ----gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~------------------------------------ 176 (350)
T KOG0641|consen 137 ----GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF------------------------------------ 176 (350)
T ss_pred ----CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc------------------------------------
Confidence 99999999843 3456677765 6777777776665522
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ .+|.+.|.++ ++=+|-++++| .|.+|++||++ -..++.+++.....-.-
T Consensus 177 ------------------------~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 177 ------------------------HAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGL 229 (350)
T ss_pred ------------------------eee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCc
Confidence 222 6888888876 34467899999 99999999999 55566654322111111
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
....|.+++..|.| ++|++|-.|....+||++.++.+ +.+-. |...|.++.|+|...|++++
T Consensus 230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~i----q~f~p-------------hsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI----QRFHP-------------HSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee----eeeCC-------------CccceeEEEeCCCceEEEEe
Confidence 23679999999999 99999999999999999998765 33333 67899999999999999999
Q ss_pred c-CCcEEEEEeeCCCCc-----eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 346 D-YMNLKLWDIRMDSTP-----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+ |..|++-|++ +.+ +.....|.... ..+.|+|+.--+++.+.|.++.+|-+.
T Consensus 292 syd~~ikltdlq--gdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 292 SYDMKIKLTDLQ--GDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccceEEEeecc--cchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence 7 4999999986 332 23334455443 579999998889999999999999764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=197.64 Aligned_cols=243 Identities=16% Similarity=0.257 Sum_probs=205.3
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~ 109 (501)
+.++|.|+.||.|...||+|+.||.|+||.+.+|.++ +.|. +|+
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl---------------------------RrFdrAHt-------- 306 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL---------------------------RRFDRAHT-------- 306 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchHH---------------------------HHhhhhhc--------
Confidence 7899999999999999999999999999999999874 4454 788
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|+++.|+ .|+..+++++.|.++++--+.+|++.+.+
T Consensus 307 ----kGvt~l~FS--rD~SqiLS~sfD~tvRiHGlKSGK~LKEf------------------------------------ 344 (508)
T KOG0275|consen 307 ----KGVTCLSFS--RDNSQILSASFDQTVRIHGLKSGKCLKEF------------------------------------ 344 (508)
T ss_pred ----cCeeEEEEc--cCcchhhcccccceEEEeccccchhHHHh------------------------------------
Confidence 889999998 78999999999999999999988755433
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|.+.|+...|.++|..++++ .||+|++|+.. ...++.++ ...+...
T Consensus 345 -------------------------rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tf-----k~~~~d~ 393 (508)
T KOG0275|consen 345 -------------------------RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTF-----KPLGTDY 393 (508)
T ss_pred -------------------------cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhc-----cCCCCcc
Confidence 7999999999999999999999 99999999999 55666653 1334567
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~ 347 (501)
+|.++..-|.++..++++...++|.+.++...- . +.|.. +.+ ..+...+++.+|.|.++.+. .|
T Consensus 394 ~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-V----rsfsS-----GkR-----EgGdFi~~~lSpkGewiYcigED 458 (508)
T KOG0275|consen 394 PVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-V----RSFSS-----GKR-----EGGDFINAILSPKGEWIYCIGED 458 (508)
T ss_pred cceeEEEcCCCCceEEEEcCCCeEEEEeccceE-E----eeecc-----CCc-----cCCceEEEEecCCCcEEEEEccC
Confidence 889999989888899999999999999987542 2 33332 111 13567888899999999875 57
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
+.++.|.+.+ ++...++..|+..+ ..++-+|..+.||+-++||.+++|.
T Consensus 459 ~vlYCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 459 GVLYCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cEEEEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchhhhcC
Confidence 9999999986 99999999998765 6899999999999999999999995
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-25 Score=210.69 Aligned_cols=254 Identities=15% Similarity=0.188 Sum_probs=174.5
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
+.+++|+.... .++..+ .+|...|.+++|+|+ +.+|++| .|++|++||+.........+......+.+|...|.
T Consensus 54 gvI~L~~~~r~---~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 54 GAIRLENQMRK---PPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred eEEEeeecCCC---ceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 45666765542 244444 799999999999997 7899998 99999999998433211100000012578999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
+++|+|++..+|++++.|+.|++||+++++.. ..+. |...|.+++|+|+|.+|++++ |+.|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i~--------------~~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQIN--------------MPKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEEe--------------cCCcEEEEEECCCCCEEEEEecCCEE
Confidence 99999998445689999999999999987532 1121 235799999999999999875 6999
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC----eEEEEecCCCCcceEEEecc
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~ 426 (501)
+|||+++ ++.+.++.+|...+... . +....|++++.+|++++.|+ .|+|||+.+.......+..
T Consensus 192 rIwD~Rs-g~~i~tl~gH~g~~~s~-------~---v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l- 259 (568)
T PTZ00420 192 HIIDPRK-QEIASSFHIHDGGKNTK-------N---IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI- 259 (568)
T ss_pred EEEECCC-CcEEEEEecccCCceeE-------E---EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-
Confidence 9999996 88888898888653210 0 02335678999999988764 7999999864343333322
Q ss_pred cCcccceeecc-CCccccCccceeeeecccce-eeccccC-Cccc--ccccCCCeEEEEEccCCC
Q 010801 427 KNENRKPILQA-APRARRSSLSNLTRGLYRQA-HENSSSG-HHEL--SYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 427 ~~~v~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~iw~~~~-~~~~--~~~~~~~i~~~~~sp~~~ 486 (501)
......+.... ..++.+ +++|+.|+. ++|.... .... ...+..++..++|.|+..
T Consensus 260 d~~~~~L~p~~D~~tg~l-----~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLI-----YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cCCccceEEeeeCCCCCE-----EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 22222221111 125666 889999999 9995432 1111 223567788899999754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=219.74 Aligned_cols=270 Identities=15% Similarity=0.239 Sum_probs=197.8
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...|.+.|+|+.|+|||++||+|+.|+.|.||+....... ..... . ........++....+.+|.
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~---~~fgs-----~-g~~~~vE~wk~~~~l~~H~------ 129 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSG---TVFGS-----T-GGAKNVESWKVVSILRGHD------ 129 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCc---ccccc-----c-ccccccceeeEEEEEecCC------
Confidence 3469999999999999999999999999999998731000 00000 0 0122334688889999999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.+++|+ |++.+|++++.|++|.+|+..+.+..+..
T Consensus 130 ------~DV~Dv~Ws--p~~~~lvS~s~DnsViiwn~~tF~~~~vl---------------------------------- 167 (942)
T KOG0973|consen 130 ------SDVLDVNWS--PDDSLLVSVSLDNSVIIWNAKTFELLKVL---------------------------------- 167 (942)
T ss_pred ------CccceeccC--CCccEEEEecccceEEEEccccceeeeee----------------------------------
Confidence 889999998 79999999999999999999987655443
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|..+.|.|-|++|++= +|++|++|++.. -.+.+.+.-. ..-...
T Consensus 168 ---------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~p-f~~~~~ 218 (942)
T KOG0973|consen 168 ---------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKP-FEESPL 218 (942)
T ss_pred ---------------------------ecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccc-hhhCCC
Confidence 7999999999999999999997 999999999773 3344433211 111123
Q ss_pred ccceEEEEEecCCCcEEEEEeC----CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC----
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---- 338 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---- 338 (501)
....+.+.|+||| .+|++... -.++.|.+-.+- .....+-||..++..+.|+|.
T Consensus 219 ~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tW-----------------k~~~~LvGH~~p~evvrFnP~lfe~ 280 (942)
T KOG0973|consen 219 TTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTW-----------------KVDKDLVGHSAPVEVVRFNPKLFER 280 (942)
T ss_pred cceeeecccCCCc-CeecchhhccCCcceeEEEecCCc-----------------eeeeeeecCCCceEEEEeChHHhcc
Confidence 4567899999999 99998644 223444443222 112245678999999999982
Q ss_pred -CC------------EEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 339 -GQ------------HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 339 -~~------------~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
.+ .+|+|+ |++|-||.... .+++.....-... . |.+++|+|||..|+.+|.
T Consensus 281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~-----------S---I~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK-----------S---IVDMSWSPDGFSLFACSL 345 (942)
T ss_pred ccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcC-----------c---eeeeeEcCCCCeEEEEec
Confidence 11 345665 69999999865 5665544322111 1 169999999999999999
Q ss_pred CCeEEEEecCCC
Q 010801 405 SNLLRIFSHGVG 416 (501)
Q Consensus 405 dg~i~iwd~~~~ 416 (501)
||+|.+..++..
T Consensus 346 DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 346 DGTVALIHFEEK 357 (942)
T ss_pred CCeEEEEEcchH
Confidence 999999998763
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=204.59 Aligned_cols=263 Identities=16% Similarity=0.169 Sum_probs=189.9
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|++++|++.|..|++.+.....+|+|..+.+... -..|.+. .+-+..-+||.
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e-------~~KGDQY--------I~Dm~nTKGHi---------- 268 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE-------FSKGDQY--------IRDMYNTKGHI---------- 268 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeee-------eeccchh--------hhhhhccCCce----------
Confidence 5689999999999988888878899999987654320 0000000 00113356888
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEecccccee-eeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.++|.+|+| .+...|++++.||++|+|++...+.. .+++..
T Consensus 269 --a~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k---------------------------------- 311 (641)
T KOG0772|consen 269 --AELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK---------------------------------- 311 (641)
T ss_pred --eeeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeec----------------------------------
Confidence 8899999996 35678999999999999999875421 111100
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc-
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE- 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~- 268 (501)
...+..-.+++++|+++|+.||+| .||.|.+|+...... ...+. .-.+|..
T Consensus 312 ----------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-~p~~~----vk~AH~~g 364 (641)
T KOG0772|consen 312 ----------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-RPVMK----VKDAHLPG 364 (641)
T ss_pred ----------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc-ccceE----eeeccCCC
Confidence 003445678899999999999999 999999999762221 11110 1356766
Q ss_pred -ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 269 -VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 269 -~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
.|++|+|+++| ++|++-+.|+++++||+++.+... .++.+- + ..-+-+.++|||+.++|++|+
T Consensus 365 ~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tgL---~--------t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 365 QDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTGL---P--------TPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CceeEEEecccc-chhhhccCCCceeeeeccccccch---hhhcCC---C--------ccCCCCccccCCCceEEEeccc
Confidence 89999999999 999999999999999999876443 222220 0 023568899999999999874
Q ss_pred ----C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 347 ----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 347 ----~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
. +.+.+||..+ -..++.+......+ ..+.|+|.=+.|+.|+.||.+++|=-.
T Consensus 430 ~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ccCCCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCceEEEECc
Confidence 1 7899999876 66666665554433 689999998899999999999987433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=199.43 Aligned_cols=241 Identities=19% Similarity=0.279 Sum_probs=194.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|+++.|-.||++||.|+..|.|+|||..+.. .+..+++|+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---------------------------iLR~~~ah~---------- 110 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---------------------------ILRQLYAHQ---------- 110 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHH---------------------------HHHHHhhcc----------
Confidence 5779999999999999999999999999955321 236688999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
.+|..+.|+| .++..|++|+.|+.+++||+.+......
T Consensus 111 --apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~~--------------------------------------- 148 (487)
T KOG0310|consen 111 --APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQAE--------------------------------------- 148 (487)
T ss_pred --CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEEE---------------------------------------
Confidence 9999999996 5778899999999999999988763211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
+.+|++.|.|.+|+|-.. ++++| .||.|++||.+.....+. .-.|..+
T Consensus 149 ----------------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~--------elnhg~p 198 (487)
T KOG0310|consen 149 ----------------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV--------ELNHGCP 198 (487)
T ss_pred ----------------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE--------EecCCCc
Confidence 279999999999998654 67788 999999999996543332 2358899
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|..+.+-|.| .++++++. ..|++||+.++.... ..+. .|...|+++.+..++..|++++ |+
T Consensus 199 Ve~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll---~~~~-------------~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 199 VESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLL---TSMF-------------NHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceeh---hhhh-------------cccceEEEEEeecCCceEeeccccc
Confidence 9999999998 88888775 579999999764321 1111 2567899999999999999886 79
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.+++||+.+ -+.+..+...... .+++.+|+++.++.|..||.+.+=+...+
T Consensus 261 ~VKVfd~t~-~Kvv~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 261 HVKVFDTTN-YKVVHSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceEEEEccc-eEEEEeeecccce----------------eeEEecCCCceEEEecccceeeeehhhcc
Confidence 999999764 7888888755443 69999999999999999999887755444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=213.97 Aligned_cols=252 Identities=16% Similarity=0.235 Sum_probs=202.8
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCcee
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (501)
-|+..+.+. ......+|.+.|.+++|..-+.+|++|+.|.+++|||..+|++
T Consensus 232 ~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-------------------------- 283 (537)
T KOG0274|consen 232 LWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-------------------------- 283 (537)
T ss_pred EeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE--------------------------
Confidence 355544333 2233568999999999988789999999999999999998875
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
...+.+|. ..|.++... ...+++|+.|.+|++|++.++.+..+.
T Consensus 284 -~~~l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~------------------- 327 (537)
T KOG0274|consen 284 -THSLQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLL------------------- 327 (537)
T ss_pred -EEEecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEe-------------------
Confidence 48899999 889999863 457888899999999999988766554
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
.+|...|+++..+ +.++++| .|++|++||+. ..+
T Consensus 328 ------------------------------------------~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~ 362 (537)
T KOG0274|consen 328 ------------------------------------------RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGK 362 (537)
T ss_pred ------------------------------------------ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hce
Confidence 5699999999987 7799998 99999999999 667
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC-cccccccceeecccccCCCcceeeecccce
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
+++. +.+|...|.++.+.+. +.+++|+.|++|++||+++. +.. ..+.. |..-+
T Consensus 363 cl~s-------l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~----~tl~~-------------h~~~v 416 (537)
T KOG0274|consen 363 CLKS-------LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI----HTLQG-------------HTSLV 416 (537)
T ss_pred eeee-------ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh----hhhcC-------------Ccccc
Confidence 7764 8899999999988874 67999999999999999987 332 44444 55566
Q ss_pred eEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc-ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
..+.+ .+++|++++ |++|++||... +++++.+.++ ...+ +.+++. ...+++++.||++
T Consensus 417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 417 SSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSV 476 (537)
T ss_pred ccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCee
Confidence 55544 478888885 69999999986 8999999884 3332 455554 4678899999999
Q ss_pred EEEecCCCCcc
Q 010801 409 RIFSHGVGSAG 419 (501)
Q Consensus 409 ~iwd~~~~~~~ 419 (501)
++||+.++...
T Consensus 477 ~l~dl~~~~~~ 487 (537)
T KOG0274|consen 477 KLWDLRSGTLI 487 (537)
T ss_pred EEEecccCchh
Confidence 99999998554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=184.49 Aligned_cols=247 Identities=13% Similarity=0.121 Sum_probs=191.4
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec--CCCcEEEEEeCCCe
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGF 291 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~dg~ 291 (501)
..|...|..+...--|+.|+++ .|++|+|+.++..++...+ .++.+|.++|+.++|.. .| .+|++++.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgk 81 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDGK 81 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCce
Confidence 6888999988888889999999 9999999999866642222 24899999999999964 45 99999999999
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC--CCEEEEE-cCCcEEEEEeeCCCCc--eeEee
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR-DYMNLKLWDIRMDSTP--VATFK 366 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~~~-~~~~i~lwd~~~~~~~--~~~~~ 366 (501)
|.||.-.+++-. +..+ ...|...|++++|.|. |-.|+++ +||.|.|.+.+.++.- .....
T Consensus 82 VIiWke~~g~w~----k~~e-----------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 82 VIIWKEENGRWT----KAYE-----------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred EEEEecCCCchh----hhhh-----------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 999998877322 1111 1347889999999996 4566776 5799999999864222 22344
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCC---C-----------cEEEEEeCCCeEEEEecCCCCcc-eEEEecccCccc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGD---G-----------LHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENR 431 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~-----------~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~ 431 (501)
.|...+ ++++|.|. | +.|++|+.|..|+||+.+++... ..+|++|.+.|+
T Consensus 147 aH~~Gv---------------nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 147 AHEIGV---------------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred cccccc---------------ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 565554 78999985 4 56999999999999999987544 456999999999
Q ss_pred ceeeccCCccccCccceeeeecccce-eeccccCC-----cccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~-----~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
.+++.|.. +.- ...+|+++.|+. .||..+.. ...+..+...+..++||+.|+.||+++ ++.+.+|.
T Consensus 212 DVAwaP~~-gl~--~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 212 DVAWAPSV-GLP--KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhcccc-CCC--ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999973 322 334999999999 99944321 122446788899999999999999887 56688884
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=206.69 Aligned_cols=276 Identities=14% Similarity=0.177 Sum_probs=224.3
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
+...|.+.|..+++.+.. .++++++||++++|+-..++- .....+++|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~-------------------------l~~~~~~~~~----- 57 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY-------------------------LETHAFEGPK----- 57 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCccc-------------------------ccceecccCc-----
Confidence 345799999999988654 688999999999999765533 3445677777
Q ss_pred ccccccccceeE-EEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~-v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+-|.. +++.+ .++.++++|+.|.+|.+|...+.....+.
T Consensus 58 -------g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-------------------------------- 97 (745)
T KOG0301|consen 58 -------GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTL-------------------------------- 97 (745)
T ss_pred -------ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhh--------------------------------
Confidence 77777 88864 46667999999999999998876633322
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+|...|++++...++. +++| .|.++++|... ++.. .++
T Consensus 98 -----------------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~-------~l~ 137 (745)
T KOG0301|consen 98 -----------------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVY-------SLQ 137 (745)
T ss_pred -----------------------------hccccceeeeecCCcCc-eEecccccceEEecch---hhhc-------ccC
Confidence 79999999999888886 8888 99999999876 3332 378
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|+..|++++.-|++ .+++|+.|.+|++|.-.+ .. ++| .+|..-|..+++-|++.++-+
T Consensus 138 gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~l----~tf-------------~gHtD~VRgL~vl~~~~flSc 196 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT--LL----KTF-------------SGHTDCVRGLAVLDDSHFLSC 196 (745)
T ss_pred CcchheeeeeecCCC--cEEeccCcceeeeccCCc--hh----hhh-------------ccchhheeeeEEecCCCeEee
Confidence 999999999999985 899999999999997632 22 444 457899999999999888888
Q ss_pred EcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 345 ~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+.||.|++|++. +..+.++.+|...+ ++++..+++..++++++|++++||+.. ...+.+.
T Consensus 197 sNDg~Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~ 256 (745)
T KOG0301|consen 197 SNDGSIRLWDLD--GEVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVIT 256 (745)
T ss_pred cCCceEEEEecc--CceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEe
Confidence 888999999994 89999999999986 788877888899999999999999977 3446676
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
-..-.++++.+-+ +|. +++|+.||. ++|..
T Consensus 257 lPttsiWsa~~L~--NgD------Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 257 LPTTSIWSAKVLL--NGD------IVVGGSDGRVRVFTV 287 (745)
T ss_pred cCccceEEEEEee--CCC------EEEeccCceEEEEEe
Confidence 6677888888887 343 699999999 99933
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=198.44 Aligned_cols=279 Identities=13% Similarity=0.185 Sum_probs=214.2
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCC-CEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~-~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
++..+.||. ++|.+++=+ |+. ..+++|+.||.|++||+.+..+...+
T Consensus 58 Fv~~L~gHr------------dGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f------------------ 105 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTF------------------ 105 (433)
T ss_pred chhhccccc------------cccchhhcC--cchhhhhhccccCceEEEEehhhhhhhhee------------------
Confidence 456678998 999999987 443 57899999999999999887654433
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCe
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~ 251 (501)
..|.+.|..|++.. +..+.+|+|.+|+.|-++ . .
T Consensus 106 -------------------------------------------~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~-~-~ 139 (433)
T KOG0268|consen 106 -------------------------------------------KAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKID-G-P 139 (433)
T ss_pred -------------------------------------------ecccCceeeEEecc-cceEEecCCcceeeeecc-C-C
Confidence 78999999999976 444444599999999988 3 3
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
..+++. -...+..+.-+..+ +.++++++ .|.|||.+-.... +.+.- -...|.
T Consensus 140 p~~til--------g~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv----~smsw-------------G~Dti~ 191 (433)
T KOG0268|consen 140 PLHTIL--------GKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPV----SSMSW-------------GADSIS 191 (433)
T ss_pred cceeee--------cccccccccccccc-ccccccCc--eeeecccccCCcc----ceeec-------------CCCcee
Confidence 444321 22345666666666 78888876 5899998765443 33322 024689
Q ss_pred EEEEeeCCC-EEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 332 DIKFANDGQ-HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 332 ~~~~sp~~~-~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
++.|+|-.. .|+++ +|+.|.|||++. ..+++........ +.++|+|.+--+++|++|..++
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEeccc-CCccceeeeeccc----------------cceecCccccceeeccccccce
Confidence 999999765 45555 689999999997 7777665543332 5799999777788999999999
Q ss_pred EEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccC---CCeEEEEEccCC
Q 010801 410 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS---SKLLHLAWHPTT 485 (501)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~---~~i~~~~~sp~~ 485 (501)
.||+...+......++|.++|..+.|+| .|+- +++||.|.. +|+...+....-.-|+ +.|.++.||.|.
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp--tG~E-----fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP--TGQE-----FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCC--Ccch-----hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc
Confidence 9999988888889999999999999999 5665 899999999 9996664443333333 478999999999
Q ss_pred CEEEEeeCCe-EEEEeC
Q 010801 486 NLIACANGNS-LFFHYA 501 (501)
Q Consensus 486 ~~la~~~~~~-~~i~~~ 501 (501)
+++++|++++ +.+|.|
T Consensus 328 kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKA 344 (433)
T ss_pred cEEEecCCCcceeeeec
Confidence 9999999655 999975
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=191.84 Aligned_cols=243 Identities=16% Similarity=0.234 Sum_probs=194.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|+-.|+.+.|+|+...+++++.|..|+||........ .....|+
T Consensus 259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---------------------------~~~~~h~-------- 303 (506)
T KOG0289|consen 259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---------------------------TSSRPHE-------- 303 (506)
T ss_pred CcceEEEEEEeccchhheeecCCcceEEeeccccccCc---------------------------ccccccc--------
Confidence 68899999999999999999999999999997755432 5567788
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
++|+.+..+ |.|.||++++.|++..+.|++++........
T Consensus 304 ----~~V~~ls~h--~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~---------------------------------- 343 (506)
T KOG0289|consen 304 ----EPVTGLSLH--PTGEYLLSASNDGTWAFSDISSGSQLTVVSD---------------------------------- 343 (506)
T ss_pred ----ccceeeeec--cCCcEEEEecCCceEEEEEccCCcEEEEEee----------------------------------
Confidence 999999998 7899999999999999999999876543210
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
....-.+++++|+|||-+|.+| .|+.|+|||+..+.... .+++|++
T Consensus 344 -------------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--------~Fpght~ 390 (506)
T KOG0289|consen 344 -------------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--------KFPGHTG 390 (506)
T ss_pred -------------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc--------cCCCCCC
Confidence 1233468899999999999999 99999999999555332 4899999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~ 348 (501)
+|..++|+.+| .+|++++.|+.|++||+|..+.. +.+.. . ....+.++.|.+.|.+|+.++ .
T Consensus 391 ~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~----kt~~l-~-----------~~~~v~s~~fD~SGt~L~~~g-~ 452 (506)
T KOG0289|consen 391 PVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF----KTIQL-D-----------EKKEVNSLSFDQSGTYLGIAG-S 452 (506)
T ss_pred ceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc----ceeec-c-----------ccccceeEEEcCCCCeEEeec-c
Confidence 99999999999 99999999999999999986533 44433 1 023699999999999999874 4
Q ss_pred cEEEEEeeCC---CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 349 NLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 349 ~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
.++||-.... -..+..+..|.+.. +.+.|....++++++|.|..++++.+
T Consensus 453 ~l~Vy~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 DLQVYICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeEEEEEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence 5555555421 23444455555433 68999999999999999999988864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=199.17 Aligned_cols=277 Identities=17% Similarity=0.240 Sum_probs=193.9
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+.+.+.|+.++..| ++...+++.+..+.|.|||.....-....... +
T Consensus 119 ~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~---------------------------~--- 167 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGE---------------------------C--- 167 (422)
T ss_pred EeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCccccccc---------------------------C---
Confidence 3344558899999986 56677888889999999998753311110000 0
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+.-. +.+|...=++++|++.. ..+++| .|++|++||++.....-..+ .....+.+
T Consensus 168 --------------------~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-~p~~~~~~ 225 (422)
T KOG0264|consen 168 --------------------RPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-DPKTIFSG 225 (422)
T ss_pred --------------------CCceE-EEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-cceEEeec
Confidence 01111 16888777889998853 356666 99999999998544321111 11124688
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~ 344 (501)
|...|..++|++....+|++++.|+.+.|||+|++. .+..+. ..+|.+.|.+++|+|-+ ..||+
T Consensus 226 h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~-------------~~ah~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 226 HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHS-------------VKAHSAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred CCcceehhhccccchhhheeecCCCeEEEEEcCCCC--CCCccc-------------ccccCCceeEEEeCCCCCceEEe
Confidence 999999999999887899999999999999999731 111122 24578999999999955 45667
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
|+ |++|+|||+|...+++..+.+|...+ ..+.|+|. ...||+++.|+.+.|||+..-......
T Consensus 291 ~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 291 GSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred ccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 75 79999999998888999999999876 79999996 568899999999999999753222110
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEE-EEee-CCeEEEEe
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI-ACAN-GNSLFFHY 500 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~l-a~~~-~~~~~i~~ 500 (501)
..+.. ... +.+..--+|...|..++|+|...++ ++++ ++.+.||.
T Consensus 356 eda~d-gpp--------------------------------EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 356 EDAED-GPP--------------------------------ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hhhcc-CCc--------------------------------ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 00111 111 1222233677889999999999874 4555 45588886
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=186.73 Aligned_cols=314 Identities=12% Similarity=0.097 Sum_probs=195.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.|.+.|++++|+.||++|||++.|++|+||++..-+.. +.++++.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----------------------eHr~~R~------------ 128 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----------------------EHRCIRQ------------ 128 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----------------------hhhHhhc------------
Confidence 359999999999999999999999999999998864331 1111110
Q ss_pred ccccccceeEEEEeecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.++. +.-+.++|+ ||-+-++ +.-...++++|.+...+--...-.....+--.+. ..+.-.+...-......++.+
T Consensus 129 nve~-dhpT~V~Fa--pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~-~kh~v~~i~iGiA~~~k~ims 204 (420)
T KOG2096|consen 129 NVEY-DHPTRVVFA--PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFE-RKHQVDIINIGIAGNAKYIMS 204 (420)
T ss_pred cccC-CCceEEEEC--CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccc-hhcccceEEEeecCCceEEEE
Confidence 0011 335889998 5554444 4456678999976532210000000000000000 000001111111122222222
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC--CeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--DQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~ 264 (501)
.+.+..|.+|++. ++.+... ......-+..+.+|+|++++++ .--.|++|.+--+ +...... +..++.
T Consensus 205 --as~dt~i~lw~lk----Gq~L~~i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~--rvf~Lk 275 (420)
T KOG2096|consen 205 --ASLDTKICLWDLK----GQLLQSI-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK--RVFSLK 275 (420)
T ss_pred --ecCCCcEEEEecC----Cceeeee-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh--hhheec
Confidence 3458899999998 3444444 4445556678899999999998 8888999986422 2111110 112578
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|...|..++|+++. ..+++.+.||++++||..-.-...+..+++.. ...| +..-.+.-..+..+|+|+.||.
T Consensus 276 GH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~-g~~p-----l~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE-GSAP-----LHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred cchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhc-CCcc-----hhhcCCCceEEEeCCCCcEEEe
Confidence 999999999999998 99999999999999998754322222222222 0000 1111233448999999999998
Q ss_pred EcCCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 345 RDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 345 ~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+....+++|..++ ++...+++ .|...+ .+++|+++|++++++++ ..++++.-
T Consensus 349 s~gs~l~~~~se~-g~~~~~~e~~h~~~I---------------s~is~~~~g~~~atcGd-r~vrv~~n 401 (420)
T KOG2096|consen 349 SFGSDLKVFASED-GKDYPELEDIHSTTI---------------SSISYSSDGKYIATCGD-RYVRVIRN 401 (420)
T ss_pred ecCCceEEEEccc-CccchhHHHhhcCce---------------eeEEecCCCcEEeeecc-eeeeeecC
Confidence 8778999999986 55544443 444433 79999999999999875 67887763
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=181.19 Aligned_cols=311 Identities=16% Similarity=0.216 Sum_probs=214.9
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceee---EeeeccCCcchh
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY---KTEFQSHEPEFD 105 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~~~ 105 (501)
.|.+.|+++.+.+ .|+|+++|+.||.|.|||++..... ++ .+..+ ..++ ...-.+|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~------e~--s~li~-------k~~c~v~~~h~~~Hk---- 101 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY------EA--SGLIA-------KHKCIVAKQHENGHK---- 101 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccch------hh--cccee-------heeeeccccCCccce----
Confidence 4899999999998 7899999999999999999865311 00 00000 0001 01123555
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
-.|..+.|-| -|..+|.+++.|.++++||..+.+....+
T Consensus 102 --------y~iss~~WyP-~DtGmFtssSFDhtlKVWDtnTlQ~a~~F-------------------------------- 140 (397)
T KOG4283|consen 102 --------YAISSAIWYP-IDTGMFTSSSFDHTLKVWDTNTLQEAVDF-------------------------------- 140 (397)
T ss_pred --------eeeeeeEEee-ecCceeecccccceEEEeecccceeeEEe--------------------------------
Confidence 7899999997 56779999999999999999987654433
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC---CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
...+.|.+-+++|- ..++++| ++-.|++-|+. .+....+
T Consensus 141 ------------------------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~------ 183 (397)
T KOG4283|consen 141 ------------------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHT------ 183 (397)
T ss_pred ------------------------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceee------
Confidence 22345555566652 3467778 99999999999 4444443
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccc-cCCCcceeeecccceeEEEEeeCCC
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
+.+|...|.++.|+|...-.|++|+.||.|++||++...-+. .+++.|+. .+...+.-..|.+.+..++|+.++.
T Consensus 184 -LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf---~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 184 -LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF---RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred -eccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee---EEeecccCccCccccccccccceeeeeeecccch
Confidence 899999999999999986688999999999999999764432 55555432 1111123457899999999999999
Q ss_pred EEEEE-cCCcEEEEEeeCCCCceeEeec--cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 341 HLLSR-DYMNLKLWDIRMDSTPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 341 ~l~~~-~~~~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
++++. .|..+++|+...+...+..+-. |.... -+. ..+. +-+...++---.++.+.++++-+++
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-----------~~~-~~~~-~~~s~vfv~~p~~~~lall~~~sgs 326 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-----------SFA-VHIQ-SMDSDVFVLFPNDGSLALLNLLEGS 326 (397)
T ss_pred hhhhccCccceEEeecccCcccccccccccccccc-----------cce-EEEe-ecccceEEEEecCCeEEEEEccCce
Confidence 99975 5799999998764333333211 11110 000 1122 2233344444456888888888874
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
. ...+..|-..+.+.++.+ +-.. +.+|..|+. ..|..
T Consensus 327 ~-ir~l~~h~k~i~c~~~~~--~fq~-----~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 327 F-VRRLSTHLKRINCAAYRP--DFEQ-----CFTGDMNGNIYMWSP 364 (397)
T ss_pred E-EEeeecccceeeEEeecC--chhh-----hhccccCCccccccc
Confidence 4 478888877888888877 4444 678888888 88844
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=206.00 Aligned_cols=270 Identities=13% Similarity=0.158 Sum_probs=200.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|+..-+.|+|.|+|.+|.+++.||.|++|+....+.. . ..+.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------------P---~ti~~~g------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------------P---ETIDISG------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------------C---chhhccC-------
Confidence 468889999999999999999999999999996654211 0 0111133
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++- .+.+|++++.+++|.+|.+.+++...++
T Consensus 57 -----~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~iL----------------------------------- 92 (933)
T KOG1274|consen 57 -----ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTIL----------------------------------- 92 (933)
T ss_pred -----ceeEEEee----cccceEEeeccceEEEeeCCCCCcccee-----------------------------------
Confidence 66888875 4669999999999999999887633221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
....-++++++|+.+|++++.| +|-.|++-++....+... +.+|.
T Consensus 93 --------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~--------lrgh~ 138 (933)
T KOG1274|consen 93 --------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV--------LRGHD 138 (933)
T ss_pred --------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee--------ecccC
Confidence 2335688899999999999999 999999999885544332 78999
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~ 346 (501)
++|.++.|+|.+ ++||+.+-||.|++||+.++.+......+... .+ ......+..++|+|+ |++++.+.
T Consensus 139 apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-n~--------~~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 139 APVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-NE--------FILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred CceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCcc-cc--------ccccceeeeeeecCCCCeEEeecc
Confidence 999999999999 99999999999999999988655211111111 00 001356788999999 56666678
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++.|++|+... ......+....... . +..++|+|+|+|||+++.||.|.|||.++-.. ...
T Consensus 209 d~~Vkvy~r~~-we~~f~Lr~~~~ss-----------~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~ 269 (933)
T KOG1274|consen 209 DNTVKVYSRKG-WELQFKLRDKLSSS-----------K--FSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEF 269 (933)
T ss_pred CCeEEEEccCC-ceeheeeccccccc-----------c--eEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccc
Confidence 89999999875 66666665433221 0 16899999999999999999999999986211 222
Q ss_pred cCcccceeeccC
Q 010801 427 KNENRKPILQAA 438 (501)
Q Consensus 427 ~~~v~~~~~~~~ 438 (501)
...|.+++|.|.
T Consensus 270 ~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 270 KRAVCCEAWKPN 281 (933)
T ss_pred cceeEEEecCCC
Confidence 344555555554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=180.05 Aligned_cols=236 Identities=18% Similarity=0.284 Sum_probs=179.4
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
+.+++|. +.|.+|+|+ .+|..|++++.|+++.+|+++..+......
T Consensus 14 r~~~~~~------------~~v~Sv~wn--~~g~~lasgs~dktv~v~n~e~~r~~~~~~-------------------- 59 (313)
T KOG1407|consen 14 RELQGHV------------QKVHSVAWN--CDGTKLASGSFDKTVSVWNLERDRFRKELV-------------------- 59 (313)
T ss_pred HHhhhhh------------hcceEEEEc--ccCceeeecccCCceEEEEecchhhhhhhc--------------------
Confidence 4567787 889999998 899999999999999999998764322111
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
+ .+|.+.|-.++|+| ....++++ .|.+|++||++.++..
T Consensus 60 --------------------------------------~-~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 60 --------------------------------------Y-RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred --------------------------------------c-cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 1 68999999999977 45677787 9999999999955544
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
..+ ....+. .-+.|+|+| +++++++.|..|.+.|.++.+..... +. ...+..
T Consensus 101 ~~i--------~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~----~~--------------~~e~ne 152 (313)
T KOG1407|consen 101 ARI--------ETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE----QF--------------KFEVNE 152 (313)
T ss_pred EEe--------eccCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccceeehh----cc--------------cceeee
Confidence 432 112222 457899999 99999999999999999987544211 11 235788
Q ss_pred EEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEE
Q 010801 333 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 333 ~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iw 411 (501)
++|+.++.+++.. +.|+|.|..... -++++.++.|...- .++.|+|+|+++|+|+.|-.+.+|
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snC---------------icI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccc-cccccccccCCcce---------------EEEEECCCCceEeeccccceeecc
Confidence 8898777766654 449999999875 89999999998642 589999999999999999999999
Q ss_pred ecCCCCcceEEEecccCcccceeeccCCccccCccceeeeeccc
Q 010801 412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (501)
Q Consensus 412 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (501)
|++..-++ ..+..+.-+|+.+.|+. +|++ ||+++.|
T Consensus 217 D~~ELiC~-R~isRldwpVRTlSFS~--dg~~-----lASaSED 252 (313)
T KOG1407|consen 217 DVDELICE-RCISRLDWPVRTLSFSH--DGRM-----LASASED 252 (313)
T ss_pred ChhHhhhh-eeeccccCceEEEEecc--Ccce-----eeccCcc
Confidence 99866443 55556666666666665 5666 6666554
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-25 Score=193.85 Aligned_cols=248 Identities=15% Similarity=0.179 Sum_probs=190.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++.|+||+|||+|+.|..|.||+.++.+.. ..+.+|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv---------------------------~~~~ghr-------- 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV---------------------------KVFKGHR-------- 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh---------------------------hcccccc--------
Confidence 68899999999999999999999999999999987643 6689999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|- .....+++++.|++|++|+++....+.+.
T Consensus 245 ----~~V~~L~fr--~gt~~lys~s~Drsvkvw~~~~~s~vetl------------------------------------ 282 (479)
T KOG0299|consen 245 ----GAVSSLAFR--KGTSELYSASADRSVKVWSIDQLSYVETL------------------------------------ 282 (479)
T ss_pred ----cceeeeeee--cCccceeeeecCCceEEEehhHhHHHHHH------------------------------------
Confidence 999999996 55678999999999999999887654433
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|.+.|.+|....-++.+.+| .|+++++|++....+.+ +.++.+
T Consensus 283 -------------------------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~ 328 (479)
T KOG0299|consen 283 -------------------------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEG 328 (479)
T ss_pred -------------------------hCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCC
Confidence 6999999999988888888888 99999999997333332 567888
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceee-cccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
.+-|++|-.+ ..|++|+.+|.|.+|++...+.+. +.. .|...+.. ...+++.+|++++..|...++++|+
T Consensus 329 sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf----~~~~AHgv~~~~--~~~~~~~Witsla~i~~sdL~asGS~ 400 (479)
T KOG0299|consen 329 SIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLF----TSRLAHGVIPEL--DPVNGNFWITSLAVIPGSDLLASGSW 400 (479)
T ss_pred CeeeEEEecc--cceeeccCCceEEEeeecccCcee----EeeccccccCCc--cccccccceeeeEecccCceEEecCC
Confidence 9999999876 689999999999999998876431 111 11211211 1122346999999999999999997
Q ss_pred CCcEEEEEeeCCCCceeEeec--cccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEE
Q 010801 347 YMNLKLWDIRMDSTPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIF 411 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iw 411 (501)
+|.|++|-+..+.+.+..+.. ..+.+ ++++|+++|+.|++| +....+--|
T Consensus 401 ~G~vrLW~i~~g~r~i~~l~~ls~~GfV---------------Nsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 401 SGCVRLWKIEDGLRAINLLYSLSLVGFV---------------NSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CCceEEEEecCCccccceeeecccccEE---------------EEEEEccCCCEEEEeccccccccee
Confidence 599999999864333333221 22222 799999999966655 444444334
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=182.42 Aligned_cols=291 Identities=14% Similarity=0.204 Sum_probs=209.6
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCc-eeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE-YRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-...+.|||||.-|++-+.|..+.+|++...... ... ..+. ......++--+
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys------------~~~----~~~~~~~~~~~~r~~e---------- 103 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYS------------KKA----DGPLNFSKHLSYRYQE---------- 103 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcc------------cCC----CCccccccceeEEecc----------
Confidence 34567899999999999999999999997632110 000 0000 00001111111
Q ss_pred cccceeEEEEee-----cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 112 IEEKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 112 ~~~~V~~v~~~~-----~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
...|..-+|-+ +|+..++++.+.|.-|++||..+|+.......
T Consensus 104 -g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------- 151 (406)
T KOG2919|consen 104 -GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------- 151 (406)
T ss_pred -CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh-------------------------------
Confidence 15577777763 57788999999999999999999986654321
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCccc---ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..|.. ...+++|+|||..|++|...+|++||+...++...........-
T Consensus 152 ----------------------------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 152 ----------------------------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred ----------------------------hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence 12322 33589999999999999999999999954554433322221222
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+..+.|.+++|+|.....+++++....+-||.-..++.+ .++. +|.+.|+.+.|.++|+.|.
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~llg-------------gh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLLG-------------GHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----eeec-------------ccCCCeeeEEeccCcCeec
Confidence 3456788999999998679999999999988887766544 3332 4789999999999999999
Q ss_pred EEc--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 010801 344 SRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 344 ~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (501)
+|. +..|-.||++....++..+..|...... . .-+...|++++|++|+.||.|++||++.......
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQ--------R----I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALERHVGDTNQ--------R----ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhhhhccCccc--------e----EEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 985 5899999999877778788777652211 1 2466678999999999999999999998445557
Q ss_pred EEecccCcccceeeccC
Q 010801 422 TVEAGKNENRKPILQAA 438 (501)
Q Consensus 422 ~~~~~~~~v~~~~~~~~ 438 (501)
.+..+...++.+.+.|.
T Consensus 335 v~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPI 351 (406)
T ss_pred ccccccccccceecCcc
Confidence 77788888888888875
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=181.37 Aligned_cols=262 Identities=19% Similarity=0.277 Sum_probs=180.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.. ..|+.|++.|.+||+|+.||.|.|||+.+.. ..+.+.+|.
T Consensus 22 d~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---------------------------iar~lsaH~-------- 65 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---------------------------IARMLSAHV-------- 65 (405)
T ss_pred cCCc-cceEEeccCcceeeeeccCCcEEEEEccccc---------------------------hhhhhhccc--------
Confidence 3344 8999999999999999999999999998754 336789999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
.+|.+++|+ ++|+.|+++|.|..|++||+..|.+....
T Consensus 66 ----~pi~sl~WS--~dgr~LltsS~D~si~lwDl~~gs~l~ri------------------------------------ 103 (405)
T KOG1273|consen 66 ----RPITSLCWS--RDGRKLLTSSRDWSIKLWDLLKGSPLKRI------------------------------------ 103 (405)
T ss_pred ----cceeEEEec--CCCCEeeeecCCceeEEEeccCCCceeEE------------------------------------
Confidence 899999998 89999999999999999999988755432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
...++|+.+.|+|... .+++. .+..-.+-++......+-. .. .-...+
T Consensus 104 --------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp--~d--~d~dln 153 (405)
T KOG1273|consen 104 --------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP--KD--DDGDLN 153 (405)
T ss_pred --------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc--CC--Cccccc
Confidence 3357889999988543 33333 4444555555522211110 00 001112
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
....+..|.+.| +++++|...|.+.++|..+.+.... .++.. ...|..+.++..|++|+.. +
T Consensus 154 ~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas-~rits---------------~~~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 154 SSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVAS-FRITS---------------VQAIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred cccccccccCCC-CEEEEecCcceEEEEecchheeeee-eeech---------------heeeeEEEEeccCcEEEEecC
Confidence 223344688998 9999999999999999988754421 11111 1468899999999999886 5
Q ss_pred CCcEEEEEeeC---CCC--ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCCcce
Q 010801 347 YMNLKLWDIRM---DST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGG 420 (501)
Q Consensus 347 ~~~i~lwd~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~ 420 (501)
|..||.|+++. .++ .+....-....+.++ .. .+++|+.+|.|++.++. -..++||.-..| .++
T Consensus 217 DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~--------~W--k~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLV 285 (405)
T KOG1273|consen 217 DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL--------QW--KKCCFSGDGEYVCAGSARAHALYIWEKSIG-SLV 285 (405)
T ss_pred CceEEEEehhhhcccCccCCcChhHHHHHHHhhh--------hh--hheeecCCccEEEeccccceeEEEEecCCc-cee
Confidence 79999999862 011 000000001111100 00 47899999999998875 467999998888 555
Q ss_pred EEEeccc
Q 010801 421 ITVEAGK 427 (501)
Q Consensus 421 ~~~~~~~ 427 (501)
+.+.+.+
T Consensus 286 KILhG~k 292 (405)
T KOG1273|consen 286 KILHGTK 292 (405)
T ss_pred eeecCCc
Confidence 7776665
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=195.47 Aligned_cols=272 Identities=19% Similarity=0.279 Sum_probs=210.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|..+.|. ++...|++|+.|..|++|++..++.....
T Consensus 176 gev~~v~~l--~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~---------------------------------------- 213 (459)
T KOG0288|consen 176 GEVHDVEFL--RNSDTLATGGSDRIIKLWNVLGEKSELIS---------------------------------------- 213 (459)
T ss_pred cccceeEEc--cCcchhhhcchhhhhhhhhcccchhhhhh----------------------------------------
Confidence 889999997 66689999999999999999877622111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
+ +.+..+.|+++.|.++++.++++ .|+.+++|+++ ..+... ++.+|+..|++
T Consensus 214 ------------------t-LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~~~-------TLsGHtdkVt~ 266 (459)
T KOG0288|consen 214 ------------------T-LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRLRH-------TLSGHTDKVTA 266 (459)
T ss_pred ------------------h-hhccCCCcceeeecCCCceEEeecCCCceeeeecc-chhhhh-------hhcccccceee
Confidence 1 15667889999999999998888 99999999999 444444 38899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|.-.. ..+++|+.|.+|++||+....... .++.. ..+..+..+ ...+++|. |++|+
T Consensus 267 ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~k---t~l~~---------------S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 267 AKFKLSH-SRVVSGSADRTIKLWDLQKAYCSK---TVLPG---------------SQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred ehhhccc-cceeeccccchhhhhhhhhhheec---ccccc---------------ccccceEec--ceeeeecccccceE
Confidence 9998876 569999999999999999854331 22222 456667666 45666774 69999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc----c
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG----K 427 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~ 427 (501)
+||.+. ..+......+.. + +++..++++..|.+.+.|.++.+.|+.+. .+..++.+. .
T Consensus 326 fwD~Rs-~~~~~sv~~gg~-v---------------tSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 326 FWDIRS-ADKTRSVPLGGR-V---------------TSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCA 387 (459)
T ss_pred EEeccC-CceeeEeecCcc-e---------------eeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccc
Confidence 999996 778888877763 3 79999999999999999999999999876 444555432 2
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eeccccCCcc--ccc-ccC-CCeEEEEEccCCCEEEEeeCC-eEEEEe
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE--LSY-NLS-SKLLHLAWHPTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~--~~~-~~~-~~i~~~~~sp~~~~la~~~~~-~~~i~~ 500 (501)
...+.+.|+| ++.+ ++.|+.||. .||+...... ... .++ ..|++++|+|.|..|++++.+ .+.+|.
T Consensus 388 sDwtrvvfSp--d~~Y-----vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 388 SDWTRVVFSP--DGSY-----VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccceeEECC--CCce-----eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3478899999 7777 999999999 9995543222 222 222 269999999999999988844 477774
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-25 Score=194.62 Aligned_cols=250 Identities=16% Similarity=0.239 Sum_probs=194.0
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
..+.|.+-|.++.+|...+++.||+. |-|+|||+...... .++..+.
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLd-------- 460 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLD-------- 460 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------Ccccccc--------
Confidence 34679999999999999999999985 78999998743211 0111221
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
.+..+.-|.++..+ +||+-|++|+.-.++.|||+.........+
T Consensus 461 --cl~rdnyiRSckL~--pdgrtLivGGeastlsiWDLAapTprikae-------------------------------- 504 (705)
T KOG0639|consen 461 --CLNRDNYIRSCKLL--PDGRTLIVGGEASTLSIWDLAAPTPRIKAE-------------------------------- 504 (705)
T ss_pred --ccCcccceeeeEec--CCCceEEeccccceeeeeeccCCCcchhhh--------------------------------
Confidence 22223668888887 899999999999999999998654211100
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
+....-....++.+||.+..+++ .||.|.|||+. ....++ .+++
T Consensus 505 ---------------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vr-------qfqG 549 (705)
T KOG0639|consen 505 ---------------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVR-------QFQG 549 (705)
T ss_pred ---------------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeee-------cccC
Confidence 02223345678899999999998 99999999999 555555 3899
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...+.||.++++| ..|-+|+.|++||.||+++++...+ .-| ...|.++.++|++.+|+.|
T Consensus 550 htDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqq--hdF----------------~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 550 HTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQ--HDF----------------SSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred CCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhh--hhh----------------hhhheecccCCCccceeee
Confidence 99999999999999 9999999999999999999864421 111 3579999999999999999
Q ss_pred cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
-. +.+.|.... +.....+..|+..+ .++.|++-|+++++.+.|+.+..|.+.-|
T Consensus 611 Mens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 611 MENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred cccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccc
Confidence 64 888887764 45555666666654 79999999999999999999999998776
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=199.57 Aligned_cols=281 Identities=14% Similarity=0.132 Sum_probs=223.4
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
+.|+....+.||. ..|..++.. ++..++++|.||++++|+-..++......
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~-------------- 52 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHA-------------- 52 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCccccccee--------------
Confidence 3677888999999 778888874 56689999999999999987766443221
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEE-EEecC-CCCEEEEE-cCCeEEEEE
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS-ISNNS-DCETFVSA-DDLRINLWN 245 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~-~~~~l~~~-~d~~i~iwd 245 (501)
+.+|.+.|.. +++.+ ++..+++| .|.+|.+|.
T Consensus 53 ---------------------------------------------~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 53 ---------------------------------------------FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred ---------------------------------------------cccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 1456666655 77764 44467788 999999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
+. +..++.+ +.+|...|.+++...++ . +++||.|.++++|-...-. .. +.+
T Consensus 88 ~~-~~~P~~~-------LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------~~-------------l~g 138 (745)
T KOG0301|consen 88 LS-QAEPLYT-------LKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------YS-------------LQG 138 (745)
T ss_pred cC-CCCchhh-------hhccccceeeeecCCcC-c-eEecccccceEEecchhhh------cc-------------cCC
Confidence 98 4444443 89999999999988776 5 9999999999999775421 12 346
Q ss_pred cccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 326 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
|+..|++++.-|++.++-.+.|.+|++|.- ++.++++.+|.+.+ +.+++-+++ .+++++.|
T Consensus 139 H~asVWAv~~l~e~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~V---------------RgL~vl~~~-~flScsND 199 (745)
T KOG0301|consen 139 HTASVWAVASLPENTYVTGSADKTIKLWKG---GTLLKTFSGHTDCV---------------RGLAVLDDS-HFLSCSND 199 (745)
T ss_pred cchheeeeeecCCCcEEeccCcceeeeccC---Cchhhhhccchhhe---------------eeeEEecCC-CeEeecCC
Confidence 889999999999985444445799999984 78899999999876 789998775 46799999
Q ss_pred CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccC
Q 010801 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 406 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~ 484 (501)
|.|++|++ ++ ....+..+|.+.++++.... +... +++.+.|++ ++|+.++......-....|.++.+-+.
T Consensus 200 g~Ir~w~~-~g-e~l~~~~ghtn~vYsis~~~--~~~~-----Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 200 GSIRLWDL-DG-EVLLEMHGHTNFVYSISMAL--SDGL-----IVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLN 270 (745)
T ss_pred ceEEEEec-cC-ceeeeeeccceEEEEEEecC--CCCe-----EEEecCCceEEEeecCceEEEEecCccceEEEEEeeC
Confidence 99999999 45 34489999999999999665 4555 899999999 999888655555555668999999999
Q ss_pred CCEEEEeeCCeEEEEe
Q 010801 485 TNLIACANGNSLFFHY 500 (501)
Q Consensus 485 ~~~la~~~~~~~~i~~ 500 (501)
|.+++.++++-++||+
T Consensus 271 gDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 271 GDIVVGGSDGRVRVFT 286 (745)
T ss_pred CCEEEeccCceEEEEE
Confidence 9998888899999997
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-25 Score=183.85 Aligned_cols=277 Identities=16% Similarity=0.247 Sum_probs=209.4
Q ss_pred CCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCC-----ccchhhhhh---hcccc-----ccCCC
Q 010801 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN-----QHISRSELE---KQMDF-----TSTSH 88 (501)
Q Consensus 22 ~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~---~~~~~-----~~~~~ 88 (501)
.++.....+|.+.|++++|++.+.++++++.|++-.||...-.-..|. ...-..+++ ....+ ....+
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 345555668999999999999999999999999999997321111110 000000010 00000 11222
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
....++..|.+|. +.|.+..|. ..|+.+++++.|++..+||+++++.....
T Consensus 260 tiRvPl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~L--------------- 310 (481)
T KOG0300|consen 260 TIRVPLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNIL--------------- 310 (481)
T ss_pred eeeeeeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceeccc---------------
Confidence 3455778899999 889999998 78999999999999999999999866543
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
.+|....+-++-+|..++++++ .|.+.++||++
T Consensus 311 ----------------------------------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 311 ----------------------------------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred ----------------------------------------------cCcchhccccccCCcceEEEEeccCceeEeccch
Confidence 7999999999999999999998 99999999999
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
..-+.+.+ +++|...|+++.|.-+ ..+++|+.|.+|++||+++.+... ..+.. .
T Consensus 345 eaI~sV~V-------FQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRspl---ATIRt--------------d 398 (481)
T KOG0300|consen 345 EAIQSVAV-------FQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSPL---ATIRT--------------D 398 (481)
T ss_pred hhcceeee-------ecccccceeEEEEecC--CceeecCCCceEEEeeeccccCcc---eeeec--------------C
Confidence 44444443 7999999999999987 468999999999999999865332 33333 4
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEe-----eccccccccccccCCCCCcceeeEEEEcCCC--cEE
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LHF 399 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l 399 (501)
.+++.++.+..+..|+.-.| ..|++||+. +..+..+ ++|...+ ++++|..+. .-|
T Consensus 399 S~~NRvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRMV---------------~c~AW~eehp~cnL 461 (481)
T KOG0300|consen 399 SPANRVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRMV---------------TCCAWLEEHPACNL 461 (481)
T ss_pred CccceeEeecCCceEEeccCCceEEEEecC--CCccccCCcccccccceee---------------eeeeccccCccccc
Confidence 67999999988888888866 999999996 4444433 4666554 789998653 347
Q ss_pred EEEeCCCeEEEEecCCC
Q 010801 400 ATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~ 416 (501)
++++.|..+.-|++...
T Consensus 462 ftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 462 FTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccceeeeeEeccc
Confidence 89999999999998754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=207.03 Aligned_cols=246 Identities=19% Similarity=0.315 Sum_probs=193.4
Q ss_pred ceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
.+..|.|.. +.++|||++..|.|.+||+...- ..+.+..|..|+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------------rnk~l~~f~EH~----------- 133 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------------RNKLLTVFNEHE----------- 133 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc------------------------cchhhhHhhhhc-----------
Confidence 455677765 57899999999999999988521 111335688898
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..|+++.|++ ....+|++||.||+|++||++..+-+.+.
T Consensus 134 -Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S~~t~--------------------------------------- 172 (839)
T KOG0269|consen 134 -RSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKKSKSTF--------------------------------------- 172 (839)
T ss_pred -cceeeeeecc-CCccEEEecCCCceEEEEeeecccccccc---------------------------------------
Confidence 8999999994 55679999999999999999876633322
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+....|+.+.|+| .+..|+++ +.|.+++||++...++.. .+.+|.++|
T Consensus 173 ----------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~-------k~~AH~GpV 223 (839)
T KOG0269|consen 173 ----------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK-------KLTAHNGPV 223 (839)
T ss_pred ----------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-------HhhcccCce
Confidence 45667899999998 46678888 999999999996666554 378999999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE-EEEEc---
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD--- 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~~~~--- 346 (501)
.++.|+|++ .+||+|+.|+.|+|||+.+.+... ..++.. ..++..+.|-|+..+ ||+++
T Consensus 224 ~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 224 LCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINT--------------IAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred EEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEee--------------cceeeeeeeccCccchhhhhhccc
Confidence 999999988 999999999999999998764321 122222 368999999998765 45543
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|-.|+|||++.+--+..++..|...+ +.++|.. |...+.+++.||+|..-.++++
T Consensus 287 dtsV~VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cceEEEEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 58999999997777888999998876 6899976 4567889999999876655543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=185.68 Aligned_cols=261 Identities=18% Similarity=0.254 Sum_probs=193.4
Q ss_pred cccceEEEEEccCC--CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
|.++|++++|+|.. +.+|+|+.-|.|-+||+.+.+. ...-...+..|.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------------d~d~v~~f~~hs------- 234 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------------DKDGVYLFTPHS------- 234 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------ccCceEEeccCC-------
Confidence 68999999999965 5889999999999999964432 233345677888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|.+|.|+| .+...+++.|.||+|++-|++++....+...
T Consensus 235 -----~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~--------------------------------- 275 (498)
T KOG4328|consen 235 -----GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL--------------------------------- 275 (498)
T ss_pred -----ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhc---------------------------------
Confidence 9999999997 5667899999999999999988764333211
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
......+.++.|+.+...++.+ .=|...+||+++.+..+.. +.-|.
T Consensus 276 --------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~ 322 (498)
T KOG4328|consen 276 --------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHK 322 (498)
T ss_pred --------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhh
Confidence 1233456678888877777777 6669999999977664442 56688
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
..|.+++++|..+.+|++++.|++.+|||+|.-..... | .-....|...|.++.|||++-.|++. -
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p--~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------P--FLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------c--ceecccccceeeeeEEcCCCCceEeecc
Confidence 89999999999988999999999999999987532211 0 11124578899999999987667765 4
Q ss_pred CCcEEEEEee---CCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 YMNLKLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~~~i~lwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.|+|||.. ....+..++. |...... .+ ......|.|+..++++|-.-..|-|+|-..+
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~R--------wl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIP-HNNRTGR--------WL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred CCceEEeecccccccCCccceee-ccCcccc--------cc-cchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 7999999983 2244455554 2221100 00 0136889999999999999999999998766
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=193.71 Aligned_cols=334 Identities=16% Similarity=0.234 Sum_probs=227.8
Q ss_pred hhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEee
Q 010801 17 SQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE 96 (501)
Q Consensus 17 ~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (501)
.+.|-..+...-..|++.|.|++..|.|.+||+|+.||+|+||.+.+|.++ .+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv---------------------------r~ 437 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV---------------------------RT 437 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE---------------------------EE
Confidence 444554444445579999999999999999999999999999999998753 22
Q ss_pred eccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcccc
Q 010801 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (501)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (501)
++ ..+.|.+|+|+|.++-..||++-.+. +-+-+..=|..+... .
T Consensus 438 ~~-------------~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~--~-------------------- 481 (733)
T KOG0650|consen 438 VQ-------------FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG--P-------------------- 481 (733)
T ss_pred Ee-------------ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc--c--------------------
Confidence 22 12669999999777666666665555 555554333111000 0
Q ss_pred CCCCCCcccccc--eeccCcceEEEeccCceeee---eeEeecCCcccceEEEEecCCCCEEEEE----cCCeEEEEECC
Q 010801 177 HNPPSFAHGYHL--EWTENMATKIANVGNSVHAR---CQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLE 247 (501)
Q Consensus 177 ~~~~~~~~~~~~--~~~~~~~i~~w~~~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~----~d~~i~iwd~~ 247 (501)
....+..+ .-.++..+..|.-....+.+ |+. ..|...|..+.|+..|.+|++. ....|.|.++.
T Consensus 482 ----t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~---I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 482 ----TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV---IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred ----hhhhhhcCCCccCCcccceeechhhhhhhccceEEE---EecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 00000000 00123455667655322222 333 5788999999999999999984 34678888887
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
....+. .+....+.|.++.|+|.. .+|++++ ...|++||+..+.+.. +.+++ .
T Consensus 555 -K~~sQ~-------PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvK---kL~tg--------------~ 607 (733)
T KOG0650|consen 555 -KRKSQS-------PFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVK---KLLTG--------------S 607 (733)
T ss_pred -cccccC-------chhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHH---HHhcC--------------C
Confidence 332222 244556789999999998 6666665 4679999998876553 33333 4
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..|..++.+|.|.-|+.|+ |+.+..||+....++.+++..|...+ ++++|++.-.++++|+.||
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCC
Confidence 5899999999999888887 59999999998788999999998876 7999999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCC----CeEEEEEc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS----KLLHLAWH 482 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~----~i~~~~~s 482 (501)
++.|+.-.--.-+ ...|. ++ .+..+.+|.. .|.+..||
T Consensus 673 tv~Vfhg~VY~Dl--------------~qnpl----------iV--------------PlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 673 TVIVFHGMVYNDL--------------LQNPL----------IV--------------PLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred cEEEEeeeeehhh--------------hcCCc----------eE--------------eeeeccCceeecccceEeeccc
Confidence 9999853211000 00000 00 1111222222 47889999
Q ss_pred cCCCEEEEeeCC-eEEEEe
Q 010801 483 PTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 483 p~~~~la~~~~~-~~~i~~ 500 (501)
|...+|.+++.| .+.+|.
T Consensus 715 P~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCCceEEecCCCceEEeeC
Confidence 999999988865 688884
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=173.49 Aligned_cols=269 Identities=12% Similarity=0.221 Sum_probs=189.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.|.+-|.++.|++.|+.+|+++.|++|+|||...... .+......+.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~------- 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHD------- 59 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecC-------
Confidence 46889999999999999999999999999999765433 677888899999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|..|.|.+..=|+.+++++.|+++.||.-.......
T Consensus 60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~------------------------------------- 97 (361)
T KOG2445|consen 60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA------------------------------------- 97 (361)
T ss_pred -----CcEEEEEecCccccceEEEEecCCceeeeeeccccccc-------------------------------------
Confidence 99999999864558999999999999999754211100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecC------
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMK------ 259 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~------ 259 (501)
.-+ ....++.+......|+++.|.|. |-.|+++ .||.++||+..... .+..+.+.
T Consensus 98 ------~~~---------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 98 ------HGR---------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQWTLQHEIQNV 161 (361)
T ss_pred ------ccc---------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccchhhhhhhhc
Confidence 000 11112222566789999999884 6677888 99999999876322 11111111
Q ss_pred CCCCCCcccceEEEEEecCC--CcEEEEEeCC-----CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 260 PSNMDDLTEVITSAEFHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
......+..+..|+.|+|.. ..+|++|+.+ +.+.||....+..... + ...+.+|+.+|++
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~--k-----------va~L~d~~dpI~d 228 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL--K-----------VAELPDHTDPIRD 228 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee--e-----------ehhcCCCCCccee
Confidence 11123456677899999753 2478888776 5788887665432111 1 1123468899999
Q ss_pred EEEeeC-C---CEEEEEc-CCcEEEEEeeCCCC-------------------ceeEeeccccccccccccCCCCCcceee
Q 010801 333 IKFAND-G---QHLLSRD-YMNLKLWDIRMDST-------------------PVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 333 ~~~sp~-~---~~l~~~~-~~~i~lwd~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
++|.|+ | ..||+++ || |+||.+..... .+..+..|...+ +
T Consensus 229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V---------------W 292 (361)
T KOG2445|consen 229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV---------------W 292 (361)
T ss_pred eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce---------------E
Confidence 999996 2 3677775 57 99999873111 122333444433 8
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.+.|.-.|..|++.|.||.||+|...
T Consensus 293 rv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 293 RVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999999999999999999999864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=183.53 Aligned_cols=295 Identities=17% Similarity=0.195 Sum_probs=206.7
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|++|.|+|....|.+|+.||+++||.+++.... .++.+.--.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~---------- 257 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK---------- 257 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence 578999999999999999999999999998865431 112222122
Q ss_pred cccceeEEEEeecCCCC-EEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
-+|.+.+|. |+|. .+++++....++.||+.+.+..++......+ ...+.....+++..+++..+.
T Consensus 258 --fPi~~a~f~--p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e----------~~~~e~FeVShd~~fia~~G~ 323 (514)
T KOG2055|consen 258 --FPIQKAEFA--PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE----------EKSMERFEVSHDSNFIAIAGN 323 (514)
T ss_pred --Cccceeeec--CCCceEEEecccceEEEEeeccccccccccCCCCcc----------cchhheeEecCCCCeEEEccc
Confidence 668999998 7887 8889999999999999988766654222111 123333444555556555543
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.|.|.+....++ +.+..+ .-.+.|..++|+.+++.|+++ .+|.|.+||++ ...++..+ ...-.-.
T Consensus 324 --~G~I~lLhakT~---eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf------~D~G~v~ 389 (514)
T KOG2055|consen 324 --NGHIHLLHAKTK---ELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRF------VDDGSVH 389 (514)
T ss_pred --CceEEeehhhhh---hhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEE------eecCccc
Confidence 566766665543 222222 235788999999999998887 99999999999 44565543 1111112
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc---
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--- 346 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--- 346 (501)
-++++.++++ .+||+|+..|.|.|||..+-.. ...|.+...+......|+++.|+||+++||.++
T Consensus 390 gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-----------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 390 GTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-----------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred eeeeeecCCC-ceEEeccCcceEEEeccchhhc-----------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence 3677788998 9999999999999999765311 111222222333457899999999999999765
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.+.+++-.+.. ......+...... +.-+++++|||.+.+||.|..+|.|.+|.+.
T Consensus 458 knalrLVHvPS-~TVFsNfP~~n~~------------vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 458 KNALRLVHVPS-CTVFSNFPTSNTK------------VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccceEEEeccc-eeeeccCCCCCCc------------ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 28899998864 4444444433332 2334899999999999999999999999874
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=197.92 Aligned_cols=246 Identities=17% Similarity=0.228 Sum_probs=192.3
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
.+..+ .|++++|++|+.||.|++|++....-...
T Consensus 29 ~Lq~d-a~~~ryLfTgGRDg~i~~W~~~~d~~~~s--------------------------------------------- 62 (735)
T KOG0308|consen 29 ALQLD-APNGRYLFTGGRDGIIRLWSVTQDSNEPS--------------------------------------------- 62 (735)
T ss_pred hcccc-CCCCceEEecCCCceEEEeccccccCCcc---------------------------------------------
Confidence 34444 36788899999999999999875431100
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-eeeeeeecCCCCCCCcccceEEEEE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF 275 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~ 275 (501)
..+...+ ..|.+.|+.+....+++.|+++ .|-+|++|+..... -+.. .+..|...|.|+++
T Consensus 63 ---------~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-------tir~H~DYVkcla~ 125 (735)
T KOG0308|consen 63 ---------TPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-------TIRTHKDYVKCLAY 125 (735)
T ss_pred ---------cchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-------hhhcccchheeeee
Confidence 0011112 7899999999999999999999 99999999998544 2333 37889999999999
Q ss_pred -ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEE
Q 010801 276 -HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 353 (501)
Q Consensus 276 -~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lw 353 (501)
.++. .++|+|+.|+.|.+||+.++... ....+.. -...+...|+..+|.+++.++.|..|++|+ .+.+++|
T Consensus 126 ~ak~~-~lvaSgGLD~~IflWDin~~~~~--l~~s~n~----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 126 IAKNN-ELVASGGLDRKIFLWDINTGTAT--LVASFNN----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred cccCc-eeEEecCCCccEEEEEccCcchh--hhhhccc----cccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence 6776 89999999999999999987320 0011111 001111237788999999999998888885 5999999
Q ss_pred EeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccce
Q 010801 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 433 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 433 (501)
|.++ .+.+..+.||...+ ..+-.++||+.++++|.||+|++||+...+++ .++..|...|+++
T Consensus 199 Dprt-~~kimkLrGHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl-~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 199 DPRT-CKKIMKLRGHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL-ATYIVHKEGVWAL 261 (735)
T ss_pred cccc-ccceeeeeccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccccee-eeEEeccCceEEE
Confidence 9998 88888889999876 78999999999999999999999999877665 7899999999999
Q ss_pred eeccCCccccCccceeeeecccce
Q 010801 434 ILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
..+++ -.. +.+|++++.
T Consensus 262 ~~~~s--f~~-----vYsG~rd~~ 278 (735)
T KOG0308|consen 262 QSSPS--FTH-----VYSGGRDGN 278 (735)
T ss_pred eeCCC--cce-----EEecCCCCc
Confidence 99974 334 788988887
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=197.67 Aligned_cols=263 Identities=14% Similarity=0.175 Sum_probs=204.6
Q ss_pred ccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc
Q 010801 20 FGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS 99 (501)
Q Consensus 20 ~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (501)
..++.......-.-.+++++.||+|++||+|..-|.++||++..-+ +...+.+
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~---------------------------~~~~~eA 499 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE---------------------------YTCFMEA 499 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh---------------------------hhhheec
Confidence 3444444555567789999999999999999999999999998544 4467889
Q ss_pred CCcchhhccccccccceeEEEEee-cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCC
Q 010801 100 HEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (501)
Q Consensus 100 h~~~~~~~~~~~~~~~V~~v~~~~-~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
|+ ..|.|+.|+. .-..++|++++.|+-|.+||+..+-..
T Consensus 500 He------------sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---------------------------- 539 (1080)
T KOG1408|consen 500 HE------------SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---------------------------- 539 (1080)
T ss_pred cc------------ceeEEEeecCchhhhHhhhhccCCceEEEEecccccch----------------------------
Confidence 99 7799999982 223578999999999999998764311
Q ss_pred CCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeee
Q 010801 179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNI 255 (501)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (501)
+.++ .+|...|+++.|.-.| ..++++ .|+.|. |+.........+
T Consensus 540 -------------------------------~qtl-d~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 540 -------------------------------VQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRL 586 (1080)
T ss_pred -------------------------------hhhh-cccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCcee
Confidence 1112 7999999999997766 556666 776654 444421111111
Q ss_pred eecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEE
Q 010801 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (501)
Q Consensus 256 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 335 (501)
+ .. ..-.-....++.++..|.. +++++++.|+.|+|||+.+++.. +.|++ -.+|.+....+..
T Consensus 587 f-~r-~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~----k~FKg----------s~~~eG~lIKv~l 649 (1080)
T KOG1408|consen 587 F-PR-HTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQV----KSFKG----------SRDHEGDLIKVIL 649 (1080)
T ss_pred c-cc-cccccccceEEEeeeCCCc-ceEEEEecccceEEEecccccee----eeecc----------cccCCCceEEEEE
Confidence 0 00 0001113568999999998 99999999999999999999876 67776 1346788999999
Q ss_pred eeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 336 ANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 336 sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.|.|-||++. +|.++.++|..+ ++++.++.||...+ +.+.|.+|-+.|++.+.||.|.||.+.
T Consensus 650 DPSgiY~atScsdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CCCccEEEEeecCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceEEEEECc
Confidence 9999999976 689999999987 99999999999887 899999999999999999999999985
Q ss_pred C
Q 010801 415 V 415 (501)
Q Consensus 415 ~ 415 (501)
.
T Consensus 714 ~ 714 (1080)
T KOG1408|consen 714 L 714 (1080)
T ss_pred h
Confidence 4
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=190.89 Aligned_cols=376 Identities=10% Similarity=0.097 Sum_probs=261.1
Q ss_pred eEEEEEccC--CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 35 VSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 35 v~~v~~s~~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
|+++. +|. =+.++.|+.+|.+.||++.+++. +.+++++.
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~---------------------------v~~f~~~~----------- 202 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV---------------------------VYTFQEFF----------- 202 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcE---------------------------EEEecccc-----------
Confidence 66664 453 25578899999999999998875 47889998
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc-ccceec
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG-YHLEWT 191 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 191 (501)
..|+++.=+ |--+.++.|..+|+|.+++++.++.+..++.. .+.+...++..++.-+ +.+.
T Consensus 203 -s~IT~ieqs--PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-------------~g~VtslSFrtDG~p~las~~-- 264 (910)
T KOG1539|consen 203 -SRITAIEQS--PALDVVAIGLENGTVIIFNLKFDKILMSFKQD-------------WGRVTSLSFRTDGNPLLASGR-- 264 (910)
T ss_pred -cceeEeccC--CcceEEEEeccCceEEEEEcccCcEEEEEEcc-------------ccceeEEEeccCCCeeEEecc--
Confidence 889999876 55568999999999999999998877655322 3666777776666543 4443
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
+.|.+.+||++........+ ..|.+.|..+.|-|....++++ .|+.+++|=.+++...-+.+ ..-.+|..+.
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~---nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L----R~R~GHs~Pp 337 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTR---NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL----RSRGGHSAPP 337 (910)
T ss_pred CCceEEEEEcCCCeeeeeee---ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe----eeccCCCCCc
Confidence 47899999999754433333 6888999999999999999998 88999988665433222211 1247899999
Q ss_pred EEEEEe-cCCCcEEEEEeCCCeEEEEEccCCcccccccc-----------ee---------------------------e
Q 010801 271 TSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-----------IL---------------------------R 311 (501)
Q Consensus 271 ~~v~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----------~~---------------------------~ 311 (501)
.++.|. .+| ..+.+++.|++++.+++..........+ .+ .
T Consensus 338 ~~irfy~~~g-~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 338 SCIRFYGSQG-HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred hheeeeccCc-EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence 999998 555 9999999999999887754211000000 00 0
Q ss_pred cccc-----------cCCCcc-----eeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEe---eccccc
Q 010801 312 DAAE-----------SHGSKS-----FFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF---KIHEHL 371 (501)
Q Consensus 312 ~~~~-----------~~~~~~-----~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~---~~~~~~ 371 (501)
.|.. ....+. .++.....+.+++.++.|++.+.|.. |.|-+|+++. +-....+ ..|...
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGE 495 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-CeeecccccCccccCc
Confidence 0000 000000 01123367899999999999999864 9999999986 6666666 356665
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeee
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 451 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 451 (501)
+ ++++...-++.+++++.+|.+++||..+.. +...+.- ...+..+...- ...+ ++.
T Consensus 496 V---------------~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l-~~~~~~iv~hr--~s~l-----~a~ 551 (910)
T KOG1539|consen 496 V---------------TGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLRL-GSSITGIVYHR--VSDL-----LAI 551 (910)
T ss_pred e---------------eEEEecCCCceEEEccCcceEEEEecCCcc-eeeeecc-CCCcceeeeee--hhhh-----hhh
Confidence 5 789998889999999999999999998763 2233322 12222333322 1111 344
Q ss_pred ecccce-eecccc--CCcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 452 GLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 452 ~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
+-.+=. .+.+.. .......+|..+|++++|||||++|++++ +..+++|+
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 444434 444333 23445668999999999999999999999 56699997
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=190.12 Aligned_cols=305 Identities=19% Similarity=0.216 Sum_probs=213.3
Q ss_pred EEEEEcc---CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 36 SAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 36 ~~v~~s~---~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
.+..|++ ....||.+.+||.|.++|.....- .++-+-+..+..|.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------r~ee~~lk~~~aH~----------- 100 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------RLEERQLKKPLAHK----------- 100 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc---------------------chhhhhhccccccc-----------
Confidence 3367776 346799999999999999774321 11112234566788
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..|.++.|. |....|++++.|.++++||+.+.++....
T Consensus 101 -nAifDl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~~--------------------------------------- 138 (720)
T KOG0321|consen 101 -NAIFDLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGGR--------------------------------------- 138 (720)
T ss_pred -ceeEeeccC--CCceeEEEccCCceeeeeeeccceeecce---------------------------------------
Confidence 899999998 67778999999999999999988755321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCee------eee---eec---
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQC------FNI---VDM--- 258 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~------~~~---~~~--- 258 (501)
.+ .+|...|.+++|.|... .|++| .||.|.|||++..... ..+ ...
T Consensus 139 -------------------~~-~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 139 -------------------LN-LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred -------------------ee-cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 11 69999999999999654 56678 9999999999853300 000 000
Q ss_pred --CC-----CCCCCcccceEE---EEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeec-
Q 010801 259 --KP-----SNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI- 326 (501)
Q Consensus 259 --~~-----~~~~~~~~~v~~---v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h- 326 (501)
++ ..-..+...|.+ +.+..|. ..||+++. |+.|++||++...... .. .+.....+..|
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~------r~---ep~~~~~~~t~s 268 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAY------RQ---EPRGSDKYPTHS 268 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccccc------cc---CCCcccCccCcc
Confidence 00 011234445555 5556676 88998888 9999999999864321 11 11111111222
Q ss_pred --ccceeEEEEeeCCCEEE-EEcCCcEEEEEeeCCC-CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE
Q 010801 327 --IASISDIKFANDGQHLL-SRDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (501)
Q Consensus 327 --~~~i~~~~~sp~~~~l~-~~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 402 (501)
...+.++.....|.+|. ++.|+.|++|++.... .++..+.++.... .+ ..-..+||+.+|++|
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f~--vks~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------FY--VKSELSPDDCSLLSG 335 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------ee--eeeecCCCCceEecc
Confidence 34567777777777765 5678999999997532 3455555554321 11 345678999999999
Q ss_pred eCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 403 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 403 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+.|...++|.+.+.+.....+.+|.-.|..+++.|...... ++++.|.. ++|.+.
T Consensus 336 Ssd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v------~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPV------ATCSDDFRVKIWRLS 391 (720)
T ss_pred CCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCc------eeeccCcceEEEecc
Confidence 99999999999998777888999999999999999866654 66788888 999443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=194.33 Aligned_cols=289 Identities=16% Similarity=0.212 Sum_probs=210.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
....++|+.+++-..|+.++. ..++|+.+...... ..+...+++-. .
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~-----------------------~~~~~~~k~kq---------n 85 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFS-----------------------EKCNHRFKTKQ---------N 85 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCC-----------------------cceeeeccccc---------c
Confidence 466788889999888888875 47888887744321 01111111111 0
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..-.+..|+|. +-+.++|++++..|.|.+||+......+
T Consensus 86 ~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk---------------------------------------- 124 (839)
T KOG0269|consen 86 KFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNK---------------------------------------- 124 (839)
T ss_pred eeeehhhcccc-cchhhhheeecCCCcEEEEecCccccch----------------------------------------
Confidence 11456788998 5678899999999999999997621100
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+..| ..|...+.++.|++- ..+|++| .||+|++||++..+ ...+ +.+....
T Consensus 125 -----------------~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t-------~~~nSES 178 (839)
T KOG0269|consen 125 -----------------LLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKST-------FRSNSES 178 (839)
T ss_pred -----------------hhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-cccc-------ccccchh
Confidence 11112 789999999999874 5677888 99999999999443 3332 5567788
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|+.|+|+|..++.|+++...|.+++||+|....+. ..+ ..|.++|.++.|+|++.+||+|+ |+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~---~k~-------------~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE---KKL-------------TAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHH---HHh-------------hcccCceEEEeecCCCceeeecCCCc
Confidence 99999999877899999999999999999876442 222 45789999999999999999985 79
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcE-EEEEe--CCCeEEEEecCCCCcceEEEec
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGS--YSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~s~~--~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
.|+|||... .+.......+... ++..+.|-|+.++ ||+++ .|-.|+|||+.-..-...++..
T Consensus 243 ~vkiWd~t~-~~~~~~~tInTia--------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 243 MVKIWDMTD-SRAKPKHTINTIA--------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred cEEEEeccC-CCccceeEEeecc--------------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 999999973 3332222222221 2268999998654 66655 3889999999987677889999
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
|...+..+++... +... |-+++.|+.
T Consensus 308 H~~~vt~i~W~~~-d~~~-----l~s~sKD~t 333 (839)
T KOG0269|consen 308 HTDSVTGIAWDSG-DRIN-----LWSCSKDGT 333 (839)
T ss_pred cCccccceeccCC-Ccee-----eEeecCccH
Confidence 9999999999763 4434 788888887
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=179.16 Aligned_cols=279 Identities=16% Similarity=0.251 Sum_probs=206.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|++|.|+ |....+++|+.|+++++|.+.......+...
T Consensus 214 ~~I~sv~FH--p~~plllvaG~d~~lrifqvDGk~N~~lqS~-------------------------------------- 253 (514)
T KOG2055|consen 214 GGITSVQFH--PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-------------------------------------- 253 (514)
T ss_pred CCceEEEec--CCCceEEEecCCCcEEEEEecCccChhheee--------------------------------------
Confidence 889999998 7788999999999999999976542221100
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc-ccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v 270 (501)
.-...+|.+.+|.|+|. .++++ ....++.||+. ..+..++ + .+.++ ...+
T Consensus 254 ---------------------~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~---~--~~~g~e~~~~ 306 (514)
T KOG2055|consen 254 ---------------------HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKL---K--PPYGVEEKSM 306 (514)
T ss_pred ---------------------eeccCccceeeecCCCceEEEecccceEEEEeecc-ccccccc---c--CCCCcccchh
Confidence 12246888999999999 77777 89999999998 4443332 1 12333 3467
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
....++|++ ++|+..+..|.|.+.-..+++.+ ..+.. .+.|..++|+.|++.|++. ++|.
T Consensus 307 e~FeVShd~-~fia~~G~~G~I~lLhakT~eli----~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 307 ERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELI----TSFKI--------------EGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred heeEecCCC-CeEEEcccCceEEeehhhhhhhh----heeee--------------ccEEeeEEEecCCcEEEEEcCCce
Confidence 788999999 99999999999999998888665 44554 4689999999999877654 5799
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC-----CcceEEEe
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGGITVE 424 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~ 424 (501)
|++||++. ..++.++......- . +++|.++++.+||+|+..|.|.|||.++- ......+.
T Consensus 368 V~v~nl~~-~~~~~rf~D~G~v~-g-------------ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 368 VYVWNLRQ-NSCLHRFVDDGSVH-G-------------TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred EEEEecCC-cceEEEEeecCccc-e-------------eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 99999996 67888876544321 1 68999999999999999999999996542 22345566
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce---eecccc-----CCcccccccCCCeEEEEEccCCCEEEEeeCCe-
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA---HENSSS-----GHHELSYNLSSKLLHLAWHPTTNLIACANGNS- 495 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~---~iw~~~-----~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~- 495 (501)
.-...|..+.|++ ++.+ ||.++.-.. ++-... .........-..|++|+|||.+.+||+|.+.+
T Consensus 433 NLtt~Itsl~Fn~--d~qi-----LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 433 NLTTAITSLQFNH--DAQI-----LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred hhheeeeeeeeCc--chhh-----hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 6677889999998 6666 665554443 333111 11111223345889999999999999999655
Q ss_pred EEEEe
Q 010801 496 LFFHY 500 (501)
Q Consensus 496 ~~i~~ 500 (501)
+.+|.
T Consensus 506 v~l~k 510 (514)
T KOG2055|consen 506 VHLFK 510 (514)
T ss_pred eeeEe
Confidence 77774
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-23 Score=176.01 Aligned_cols=225 Identities=18% Similarity=0.212 Sum_probs=168.4
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.+.++.++-.+.++..+.++-+..|.|+||++...-. .+....
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~-~l~~~~----------------------------------- 193 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN-ALSEPG----------------------------------- 193 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhh-hhcCcc-----------------------------------
Confidence 34888888887555666667778899999999865321 000000
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
..++- ...+++.++ .+|...=+.|+|||- ...|++| --+.|++|...++.-.+ .+..+.+|+..
T Consensus 194 --~~~~~------s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~S 259 (440)
T KOG0302|consen 194 --LEVKD------SEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKS 259 (440)
T ss_pred --ccccc------cccCceEEe-cccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccc
Confidence 00000 124455555 789988899999993 2357888 78899999988533222 23357789999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-C
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~ 348 (501)
|-.++|+|....+|++|+-||+|+|||+|.+.... .++ .+.|.+.|+.+.|+.+-.+||+|+| |
T Consensus 260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~---~~~------------~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA---AVS------------TKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred hhhhccCCccCceEEeeecCceEEEEEecCCCccc---eeE------------eeccCCceeeEEccCCcceeeecCCCc
Confidence 99999999987899999999999999999874221 111 1357789999999998889999976 9
Q ss_pred cEEEEEeeC--CCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCC
Q 010801 349 NLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 349 ~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+++|||++. .++++..++.|..++ +++.|+|. ...|++++.|..|.|||+...
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999984 357889999999887 89999995 567888999999999999754
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=173.20 Aligned_cols=227 Identities=16% Similarity=0.223 Sum_probs=167.4
Q ss_pred ccccccceEEEEEccCC--CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 28 ELQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
.+.|.+.++.+.-++-| .+.|+=+..|.|.||++... .+.+..++. .......+++.++.+|.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~---------l~~l~~~~~--~~~~s~~~Pl~t~~ghk---- 211 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH---------LNALSEPGL--EVKDSEFRPLFTFNGHK---- 211 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhh---------hhhhcCccc--cccccccCceEEecccC----
Confidence 34578888888888865 45555568999999997632 222322222 12235677788899998
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..=+.|+|||.. ...|++|..-+.|++|...++....-.
T Consensus 212 --------~EGy~LdWSp~~-~g~LlsGDc~~~I~lw~~~~g~W~vd~-------------------------------- 250 (440)
T KOG0302|consen 212 --------GEGYGLDWSPIK-TGRLLSGDCVKGIHLWEPSTGSWKVDQ-------------------------------- 250 (440)
T ss_pred --------ccceeeeccccc-ccccccCccccceEeeeeccCceeecC--------------------------------
Confidence 667999999743 346788888889999999887643211
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
+ -+.+|...|..++|+|.. ..|++| .|++|+|||++...+.-.+. .
T Consensus 251 -------------------------~-Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------~ 298 (440)
T KOG0302|consen 251 -------------------------R-PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------T 298 (440)
T ss_pred -------------------------c-cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------e
Confidence 0 115799999999999954 466777 99999999999654333321 4
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--CE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QH 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~ 341 (501)
..|...|+.|.|+... .+|++|+.||+++|||+|+-+.. .+...|+-|..+|+++.|+|.. .+
T Consensus 299 kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~--------------~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG--------------QPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred eccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC--------------CcceeEEeccCCeeEEEeccccCceE
Confidence 7899999999999998 69999999999999999975432 1222355688999999999953 34
Q ss_pred EEEEcCCcEEEEEeeC
Q 010801 342 LLSRDYMNLKLWDIRM 357 (501)
Q Consensus 342 l~~~~~~~i~lwd~~~ 357 (501)
.++|.|.+|.+||+..
T Consensus 364 aasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSV 379 (440)
T ss_pred EeccCCCcEEEEEeec
Confidence 4456789999999865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=178.45 Aligned_cols=236 Identities=18% Similarity=0.291 Sum_probs=179.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.++|.|++-+|+|.||+.|+..|.|++|.+.+|..+ ..+.+|-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---------------------------~v~~aHY---------- 123 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---------------------------NVLSAHY---------- 123 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHH---------------------------HHHHhhc----------
Confidence 688999999999999999989999999999999764 5678888
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|+++.|+ .||.+|++|+.||.|.+|.+.+---
T Consensus 124 --Q~ITcL~fs--~dgs~iiTgskDg~V~vW~l~~lv~------------------------------------------ 157 (476)
T KOG0646|consen 124 --QSITCLKFS--DDGSHIITGSKDGAVLVWLLTDLVS------------------------------------------ 157 (476)
T ss_pred --cceeEEEEe--CCCcEEEecCCCccEEEEEEEeecc------------------------------------------
Confidence 889999998 8999999999999999998754210
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
........++..+ ..|.-+|+++...+. ...++++ .|.++++||+..+ ..+..+ ....
T Consensus 158 ---------a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti--------~fp~ 218 (476)
T KOG0646|consen 158 ---------ADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTI--------TFPS 218 (476)
T ss_pred ---------cccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEE--------ecCC
Confidence 0000012344444 799999999887654 4577777 9999999999944 444322 1345
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc--ceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~l~~~~ 346 (501)
.+.+++.+|.+ ..+++|+.+|.|.+.++.+......... .............+.||.+ .|++++++-||.+|++|+
T Consensus 219 si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 219 SIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred cceeEEEcccc-cEEEecCCcceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 78999999998 9999999999999998866432111111 0111222334445778888 999999999999999996
Q ss_pred -CCcEEEEEeeCCCCceeEeecccccc
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLR 372 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~ 372 (501)
||.++|||+.. .++++++....+++
T Consensus 297 ~dg~VcvWdi~S-~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 297 EDGKVCVWDIYS-KQCIRTLQTSKGPV 322 (476)
T ss_pred CCCCEEEEecch-HHHHHHHhhhcccc
Confidence 59999999986 78888777545554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=163.26 Aligned_cols=305 Identities=13% Similarity=0.172 Sum_probs=198.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|+.+..-+ ..|+++++|+.||.|.+||++.........+-.
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~------------------------------------ 86 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIA------------------------------------ 86 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhcccee------------------------------------
Confidence 8899999874 678999999999999999998643111100000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
..+++ ..+....+|.-.|.++.|-| |..++.++ .|.++++||.++.+... .+ ...+.|+
T Consensus 87 k~~c~----------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~-~F--------~me~~VY 147 (397)
T KOG4283|consen 87 KHKCI----------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV-DF--------KMEGKVY 147 (397)
T ss_pred heeee----------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE-Ee--------ecCceee
Confidence 00000 01111268899999999988 55567777 99999999999444333 22 1335677
Q ss_pred EEEEecCCC--cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-EEc-C
Q 010801 272 SAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-Y 347 (501)
Q Consensus 272 ~v~~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~~~-~ 347 (501)
+-+++|-.. -++++|..+-.|++.|+..+... +++ .||...|.++.|+|..++++ +|+ |
T Consensus 148 shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----H~L-------------sGHr~~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 148 SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----HTL-------------SGHRDGVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred hhhcChhhhcceEEEEecCCCcEEEEeccCCcce----eee-------------ccccCceEEEEeccCceeEEEecCCC
Confidence 777777541 47888889999999999998643 333 45889999999999998766 554 6
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccc--cCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe-
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE- 424 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 424 (501)
|.|++||++....+...+..|....+...+ ..+.. -+.+++|+.++.++++++.|..+++|+..+|+.....+-
T Consensus 211 g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g---kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~ 287 (397)
T KOG4283|consen 211 GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG---KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP 287 (397)
T ss_pred ceEEEEEeecccceeEEeecccCccCccccccccccc---eeeeeeecccchhhhhccCccceEEeecccCccccccccc
Confidence 999999999755778888777643322211 11122 237899999999999999999999999998854322221
Q ss_pred -cccCcc-cceeeccCCccccCccceeeeecccce-eecc--ccCCcccccccCCCeEEEEEccCCCEEEEee-CCeEEE
Q 010801 425 -AGKNEN-RKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 498 (501)
Q Consensus 425 -~~~~~v-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~--~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i 498 (501)
.|.... ..+..... +... ++.--.++. .+.+ .++.+.....|-+.|.+.++-|+=..+.++. +.+++.
T Consensus 288 ~~~n~~~~~~~~~~~~-~s~v-----fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 288 IIHNQTTSFAVHIQSM-DSDV-----FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM 361 (397)
T ss_pred ccccccccceEEEeec-ccce-----EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence 111100 00111100 1111 222222233 3331 1223344456677888999999988888877 555887
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|.
T Consensus 362 w~ 363 (397)
T KOG4283|consen 362 WS 363 (397)
T ss_pred cc
Confidence 75
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=162.75 Aligned_cols=246 Identities=17% Similarity=0.196 Sum_probs=184.3
Q ss_pred CCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 25 ~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
....+.|..++.+++|.++ ..+++|+.||.|+.+|+.++.. ..+..|.
T Consensus 47 l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~----------------------------~~igth~--- 94 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE----------------------------DQIGTHD--- 94 (323)
T ss_pred hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc----------------------------eeeccCC---
Confidence 3445679999999999974 4588999999999999998865 4567788
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
++|.+|.++ +....+++|+.|++|++||.+.......
T Consensus 95 ---------~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~-------------------------------- 131 (323)
T KOG1036|consen 95 ---------EGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGT-------------------------------- 131 (323)
T ss_pred ---------CceEEEEee--ccCCeEEEcccCccEEEEeccccccccc--------------------------------
Confidence 999999998 5667899999999999999986332111
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
......|.++..+ +..|+.| .+..|.+||++......+. .-
T Consensus 132 ------------------------------~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~------re 173 (323)
T KOG1036|consen 132 ------------------------------FDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR------RE 173 (323)
T ss_pred ------------------------------cccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh------cc
Confidence 1223377777654 5678887 9999999999965554422 12
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
....-.++++++-|++ .-+++++-||.|.+=.+............|..|........ .--+|++++|+|-...|+
T Consensus 174 S~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~----~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE----IIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred ccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce----EEEEeceeEeccccceEE
Confidence 3345678999999977 77999999999988766655333232345666543332221 124799999999988999
Q ss_pred EE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 344 SR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 344 ~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
+| +||.|.+||+.+ .+.+..+...+..+ ..++|+.||..||.++.
T Consensus 249 TgGsDG~V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecCCCceEEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence 87 579999999986 77777776654433 58999999999999875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-20 Score=172.67 Aligned_cols=290 Identities=8% Similarity=0.065 Sum_probs=190.9
Q ss_pred CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEee
Q 010801 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (501)
Q Consensus 44 g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (501)
++.+++++.|+.|++||+.+++. ...+..|. .+..++|+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------------~~~~~~~~-------------~~~~l~~~- 39 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV---------------------------TRTFPVGQ-------------RPRGITLS- 39 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce---------------------------EEEEECCC-------------CCCceEEC-
Confidence 35788999999999999987653 24455443 36779997
Q ss_pred cCCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 124 ~~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
++++.+ ++++.++.|++||..+++.....
T Consensus 40 -~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------------------------------------------------- 69 (300)
T TIGR03866 40 -KDGKLLYVCASDSDTIQVIDLATGEVIGTL------------------------------------------------- 69 (300)
T ss_pred -CCCCEEEEEECCCCeEEEEECCCCcEEEec-------------------------------------------------
Confidence 778776 56678899999999887644321
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 280 (501)
..+ ..+..++|+|+++.++++ .++.+++||+.. .+.+.. +. +...+.+++|+|++
T Consensus 70 ------------~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~-------~~-~~~~~~~~~~~~dg- 126 (300)
T TIGR03866 70 ------------PSG-PDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAE-------IP-VGVEPEGMAVSPDG- 126 (300)
T ss_pred ------------cCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeE-------ee-CCCCcceEEECCCC-
Confidence 111 124568899999977654 689999999984 444332 11 22345789999999
Q ss_pred cEEEEEeCCC-eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEEEEEeeC
Q 010801 281 NLLAYSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRM 357 (501)
Q Consensus 281 ~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~lwd~~~ 357 (501)
+++++++.++ .+.+||..+++.. ..... ......++|+|++++|+++ . ++.|++||+++
T Consensus 127 ~~l~~~~~~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTKTYEIV----DNVLV--------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred CEEEEEecCCCeEEEEeCCCCeEE----EEEEc--------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 8888888765 5677898776432 11111 1345678999999988654 3 59999999986
Q ss_pred CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE-EeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
++.+..+..+...... ... ....++|+|++++++. .+.++.|.+||+.+++.. ..+ .+...+..++++
T Consensus 189 -~~~~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~ 257 (300)
T TIGR03866 189 -RKVIKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFT 257 (300)
T ss_pred -ceeeeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-EeCCCcceEEEC
Confidence 6666655432211000 000 0146899999998654 455678999999877443 333 344578899999
Q ss_pred cCCccccCccceeeee-cccce-eeccccCCc-ccccccCCCeEEEEEcc
Q 010801 437 AAPRARRSSLSNLTRG-LYRQA-HENSSSGHH-ELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 437 ~~~~~~~~~~~~l~~~-~~~~~-~iw~~~~~~-~~~~~~~~~i~~~~~sp 483 (501)
| ++.. |+++ +.++. .+|+..... ..........+.++++|
T Consensus 258 ~--~g~~-----l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 258 P--DEKY-----LLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred C--CCCE-----EEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 8 6665 6665 45777 999555322 22223345557777665
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-24 Score=196.77 Aligned_cols=230 Identities=16% Similarity=0.253 Sum_probs=189.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.++..- ..++.+++|+.|..+.+|.+.....+.
T Consensus 29 aav~~lk~~--~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------------------------------ 64 (825)
T KOG0267|consen 29 AAVGCLKIR--KSSRSLVTGGEDEKVNLWAIGKPNAIT------------------------------------------ 64 (825)
T ss_pred hhhceeeee--ccceeeccCCCceeeccccccCCchhh------------------------------------------
Confidence 778888773 677889999999999999876433111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+ .+|..+|.++.|+++..+|++| .+|+|++||++ ....++ ++.+|...+.+
T Consensus 65 ------------------S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~s 117 (825)
T KOG0267|consen 65 ------------------SL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITS 117 (825)
T ss_pred ------------------ee-eccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcce
Confidence 12 7999999999999999999999 99999999999 555555 38899999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~ 351 (501)
+.|+|-+ .+++.|+.|+.+++||++..... +.+.+ |...+..+.|+|+|++++.|.+ ..++
T Consensus 118 v~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~----~~~~s-------------~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 118 VDFHPYG-EFFASGSTDTDLKIWDIRKKGCS----HTYKS-------------HTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred eeeccce-EEeccccccccceehhhhccCce----eeecC-------------CcceeEEEeecCCCceeeccCCcceee
Confidence 9999999 99999999999999999865433 34433 6788999999999999999865 9999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
|||... ++.+..|..|...+ ..+.|+|..-++++|+.|++|++||+++- .+....+.....|.
T Consensus 180 i~d~~a-gk~~~ef~~~e~~v---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 180 IWDLTA-GKLSKEFKSHEGKV---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVR 242 (825)
T ss_pred eecccc-cccccccccccccc---------------cccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCce
Confidence 999985 99999999998876 67889999999999999999999999976 44455666688899
Q ss_pred ceeeccCCccccCccceeeeecccc
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQ 456 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (501)
+..|.+ +++. +.+|-...
T Consensus 243 ~~~fn~--~~~~-----~~~G~q~s 260 (825)
T KOG0267|consen 243 SLAFNP--DGKI-----VLSGEQIS 260 (825)
T ss_pred eeeecC--Ccee-----eecCchhh
Confidence 999998 6665 55554443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=162.61 Aligned_cols=281 Identities=14% Similarity=0.149 Sum_probs=178.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+-|+++.|. +.|+++++|+.|++|+|||.....-..
T Consensus 14 DlihdVs~D--~~GRRmAtCSsDq~vkI~d~~~~s~~W------------------------------------------ 49 (361)
T KOG2445|consen 14 DLIHDVSFD--FYGRRMATCSSDQTVKIWDSTSDSGTW------------------------------------------ 49 (361)
T ss_pred ceeeeeeec--ccCceeeeccCCCcEEEEeccCCCCce------------------------------------------
Confidence 889999996 789999999999999999975433111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEec-C-CCCEEEEE-cCCeEEEEECCCCCeee-eeeecCCCCCCCcccc
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNN-S-DCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDDLTEV 269 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~-~~~~l~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~ 269 (501)
.+.... ..|.+.|..+.|. | -|+.++++ .|+++.||.-....... ..--.+...+......
T Consensus 50 --------------~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrss 114 (361)
T KOG2445|consen 50 --------------SCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSS 114 (361)
T ss_pred --------------EEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcc
Confidence 111111 6899999999994 4 48888888 99999999753111000 0000111235667788
Q ss_pred eEEEEEecCC-CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---CCEEEEE
Q 010801 270 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSR 345 (501)
Q Consensus 270 v~~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~~~ 345 (501)
|+.+.|.|.. +-+|++++.||.+|||+....-.. ..+..-++-.....++..+..+..++.|+|. ..+||.|
T Consensus 115 V~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 115 VTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred eeEEEecchhcceEEEEeccCcEEEEEecCCcccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE
Confidence 9999999864 258999999999999987653222 1111101111111122335567889999974 4688888
Q ss_pred cC------CcEEEEEeeCCCC---ceeEeeccccccccccccCCCCCcceeeEEEEcCC----CcEEEEEeCCCeEEEEe
Q 010801 346 DY------MNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGSYSNLLRIFS 412 (501)
Q Consensus 346 ~~------~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~s~~~dg~i~iwd 412 (501)
++ +.++||.....++ .+.++.+|..++ ++++|.|+ -.+||+++.|| |+||.
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI---------------~di~wAPn~Gr~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI---------------RDISWAPNIGRSYHLLAVATKDG-VRIFK 254 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcc---------------eeeeeccccCCceeeEEEeecCc-EEEEE
Confidence 65 4899998765442 244566677765 89999996 34799999999 99999
Q ss_pred cCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 413 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 413 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
+....... .-+. ...|...+++ . -+.+...-+|..+|..+.|+-.|..|++.+
T Consensus 255 v~~~~s~i-~~ee--------~~~~~~~~~l--------------~----v~~vs~~~~H~~~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 255 VKVARSAI-EEEE--------VLAPDLMTDL--------------P----VEKVSELDDHNGEVWRVRWNMTGTILSSTG 307 (361)
T ss_pred Eeeccchh-hhhc--------ccCCCCcccc--------------c----eEEeeeccCCCCceEEEEEeeeeeEEeecC
Confidence 98542211 0000 0001000001 0 012333446667777777777777777776
Q ss_pred CCe-EEEEe
Q 010801 493 GNS-LFFHY 500 (501)
Q Consensus 493 ~~~-~~i~~ 500 (501)
+|| +++|.
T Consensus 308 dDG~VRLWk 316 (361)
T KOG2445|consen 308 DDGCVRLWK 316 (361)
T ss_pred CCceeeehh
Confidence 555 66664
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=173.34 Aligned_cols=265 Identities=12% Similarity=0.135 Sum_probs=175.1
Q ss_pred ccccceEEEEEccCCCEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
++...+.+++|+|+|+.+ ++++.++.|++||..+++.. ..+..+.
T Consensus 28 ~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~------- 73 (300)
T TIGR03866 28 PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI---------------------------GTLPSGP------- 73 (300)
T ss_pred ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE---------------------------EeccCCC-------
Confidence 334557889999999977 56678899999998876531 2333332
Q ss_pred ccccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.+..++|+ ++++.++++ +.|+.|++||+.+++.....
T Consensus 74 ------~~~~~~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~---------------------------------- 111 (300)
T TIGR03866 74 ------DPELFALH--PNGKILYIANEDDNLVTVIDIETRKVLAEI---------------------------------- 111 (300)
T ss_pred ------CccEEEEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEe----------------------------------
Confidence 24567887 778777655 56899999999876543321
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC-CeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+...+.+++|+|+++.++++ .+ ..+.+||.++ ....... .
T Consensus 112 ----------------------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~------~-- 154 (300)
T TIGR03866 112 ----------------------------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNV------L-- 154 (300)
T ss_pred ----------------------------eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEE------E--
Confidence 112235679999999999988 54 4577889873 3333221 1
Q ss_pred cccceEEEEEecCCCcEEE-EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
....+..++|+|++ +.|+ ++..++.|++||+.+++.. +.+..+.... . ........++|+|++++++.
T Consensus 155 ~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~-~-----~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 155 VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV-H-----PEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeeccccc-c-----cccCCccceEECCCCCEEEE
Confidence 12245678999999 7665 4456999999999987543 2222100000 0 00112456889999998654
Q ss_pred E--cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCCCCcceE
Q 010801 345 R--DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 345 ~--~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~ 421 (501)
+ .++.+.+||+++ ++.+..+... ..+ .+++|+|+|++|+++ +.+|.|++||+.+++.+ .
T Consensus 224 ~~~~~~~i~v~d~~~-~~~~~~~~~~-~~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~ 285 (300)
T TIGR03866 224 ALGPANRVAVVDAKT-YEVLDYLLVG-QRV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-K 285 (300)
T ss_pred EcCCCCeEEEEECCC-CcEEEEEEeC-CCc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-E
Confidence 3 347899999975 6655544322 222 689999999999876 46899999999988443 5
Q ss_pred EEecccCcccceeecc
Q 010801 422 TVEAGKNENRKPILQA 437 (501)
Q Consensus 422 ~~~~~~~~v~~~~~~~ 437 (501)
.++.. ...+.++++|
T Consensus 286 ~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 286 SIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEcc-cccceeEeCC
Confidence 66554 4446666543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-22 Score=173.89 Aligned_cols=229 Identities=13% Similarity=0.082 Sum_probs=180.8
Q ss_pred cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
-.+.|.+++-+|+|.+++.| ..+.|++|.+. .+..+.+ +.+|-..|+++.|+-|| .+|++|+.||.|.+|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v-------~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNV-------LSAHYQSITCLKFSDDG-SHIITGSKDGAVLVW 150 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHH-------HHhhccceeEEEEeCCC-cEEEecCCCccEEEE
Confidence 35689999999999999999 99999999999 5555553 67899999999999999 999999999999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--CEEEEEc-CCcEEEEEeeCCCCceeEeecccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLR 372 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~ 372 (501)
++..-- .... ...+.+...|..|.-+|+++...+.| .+|++++ |.++++||+.. +..+.++.-....
T Consensus 151 ~l~~lv------~a~~--~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~fp~si- 220 (476)
T KOG0646|consen 151 LLTDLV------SADN--DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTITFPSSI- 220 (476)
T ss_pred EEEeec------cccc--CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEecCCcc-
Confidence 986421 1111 11455666788899999999988753 4666664 79999999986 8887777644432
Q ss_pred ccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC---------------cceEEEecccC--cccceee
Q 010801 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS---------------AGGITVEAGKN--ENRKPIL 435 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~--~v~~~~~ 435 (501)
.+++.+|-++.+..|+.+|.|.+.++.... .....+.+|.+ +|+++++
T Consensus 221 ---------------~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 221 ---------------KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ---------------eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 689999999999999999999998875422 11345778888 9999999
Q ss_pred ccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEccCCC
Q 010801 436 QAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
+. ||.+ |++|+.||+ .+|+.. +.+..+....++|+.+.+.|-..
T Consensus 286 s~--Dgtl-----LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 286 ST--DGTL-----LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ec--CccE-----EEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 98 8888 999999999 999554 34444444667888888876543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-20 Score=170.39 Aligned_cols=393 Identities=15% Similarity=0.106 Sum_probs=259.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.|++++.+|.++.++.||.||.+..++...++. .+...|.-.+
T Consensus 110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I-------------------------~~~r~l~rq~---------- 154 (691)
T KOG2048|consen 110 GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI-------------------------TYKRSLMRQK---------- 154 (691)
T ss_pred CcceeEEEeCCccceEEeecCCceEEEEecCCceE-------------------------EEEeeccccc----------
Confidence 68999999999999999999999777777665543 2444444444
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.|.+++|. +++..+++|+.||.|++||...+........+...- ......+++....-....+++|.
T Consensus 155 --sRvLslsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l------~k~~~~iVWSv~~Lrd~tI~sgD-- 222 (691)
T KOG2048|consen 155 --SRVLSLSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL------SKREPTIVWSVLFLRDSTIASGD-- 222 (691)
T ss_pred --ceEEEEEec--CCccEEEecccCceEEEEEcCCCceEEEeeeccccc------ccCCceEEEEEEEeecCcEEEec--
Confidence 889999997 889999999999999999999887665433322110 00011122222222333344443
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
+.|.+++||..... ..+.+ ..|.+.|.+++..+++..++++ .|+.|..+.....+...- .......|...|
T Consensus 223 S~G~V~FWd~~~gT---LiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv----~~~~r~~h~hdv 294 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGT---LIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWV----INSRRDLHAHDV 294 (691)
T ss_pred CCceEEEEcccCcc---hhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcccee----eeccccCCcccc
Confidence 37899999998643 33333 5789999999999998888887 999999888774443211 112356788889
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccc-------------------cccceeecccccCC-------------
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-------------------HSARILRDAAESHG------------- 318 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~-------------------~~~~~~~~~~~~~~------------- 318 (501)
++++..++ .+++|+.|..+.+-..+..+... +....+..|.....
T Consensus 295 rs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~ 371 (691)
T KOG2048|consen 295 RSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNY 371 (691)
T ss_pred eeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccCh
Confidence 99998865 68899999888876655421110 00011111111000
Q ss_pred --CcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 319 --SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 319 --~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
.......-...|.+.+.+|+|++|+.++-..+++|.+.... .+........+. ...++..+.|+-|+
T Consensus 372 ~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~----------~~~~a~~i~ftid~ 440 (691)
T KOG2048|consen 372 IHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPL----------ALLDASAISFTIDK 440 (691)
T ss_pred hhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchh----------hhccceeeEEEecC
Confidence 00011222457899999999999999877889999997533 333333222211 11122578888888
Q ss_pred cEEEEEe-CCCeEEEEecCCCCcc---eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCccccc-
Q 010801 397 LHFATGS-YSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSY- 470 (501)
Q Consensus 397 ~~l~s~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~- 470 (501)
..++.++ .+..+.++++++.... ...-++....+..++.++ +|.+ +|..+.++. .+|++.......+
T Consensus 441 ~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss--dG~y-----iaa~~t~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 441 NKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS--DGNY-----IAAISTRGQIFVYNLETLESHLLK 513 (691)
T ss_pred ceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC--CCCE-----EEEEeccceEEEEEcccceeecch
Confidence 8887777 6788888888765332 112224567788888888 7888 898888888 9997665443322
Q ss_pred -ccCCCeEEEEEccC-CCEEEEee-CCeEEEEe
Q 010801 471 -NLSSKLLHLAWHPT-TNLIACAN-GNSLFFHY 500 (501)
Q Consensus 471 -~~~~~i~~~~~sp~-~~~la~~~-~~~~~i~~ 500 (501)
.....|++++++|. .+.|+++. ++.+|=|+
T Consensus 514 ~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 514 VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred hccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 44578999999955 56677666 56677664
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=178.54 Aligned_cols=256 Identities=19% Similarity=0.292 Sum_probs=200.2
Q ss_pred chhhhhhhccCCCCCCccc---cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCC
Q 010801 12 LEWKCSQAFGERNPDEELQ---DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (501)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~---h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (501)
..|.++|. +++.++..+. ....|+++...|||+.|++|++-.++.|||+.....
T Consensus 443 KVWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---------------------- 499 (705)
T KOG0639|consen 443 KVWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---------------------- 499 (705)
T ss_pred EEeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc----------------------
Confidence 45888887 5555555543 578899999999999999999999999999885432
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
+...++.... -..++++.+ ||.+...++..||.|.|||+.+...+..+
T Consensus 500 ---rikaeltssa------------paCyALa~s--pDakvcFsccsdGnI~vwDLhnq~~Vrqf--------------- 547 (705)
T KOG0639|consen 500 ---RIKAELTSSA------------PACYALAIS--PDAKVCFSCCSDGNIAVWDLHNQTLVRQF--------------- 547 (705)
T ss_pred ---chhhhcCCcc------------hhhhhhhcC--CccceeeeeccCCcEEEEEcccceeeecc---------------
Confidence 2223333322 346777776 78889999999999999999986644432
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
.+|.+.+.||..++||..|-+| -|++|+.||++
T Consensus 548 ----------------------------------------------qGhtDGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 548 ----------------------------------------------QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred ----------------------------------------------cCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence 8999999999999999999999 99999999999
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
...+..+ ......|.++-++|.+ .++++|-+++.+.+......+. ..+ -.|.
T Consensus 582 egrqlqq---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yql-------------hlhe 633 (705)
T KOG0639|consen 582 EGRQLQQ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQL-------------HLHE 633 (705)
T ss_pred hhhhhhh---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eee-------------cccc
Confidence 5554332 2345789999999999 9999999999988877655421 111 1256
Q ss_pred cceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
.-|.++.|.+.|+++++. -|+-+..|.... +..+...+..... .++.+|.|.++|++|+.|.
T Consensus 634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~SsV----------------lsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSSV----------------LSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred cEEEEEEecccCceeeecCchhhhhhccCcc-ccceeeccccCcc----------------eeeeeccCceEEEecCCCc
Confidence 789999999999999975 479999999875 6655555433322 6899999999999999999
Q ss_pred eEEEEec
Q 010801 407 LLRIFSH 413 (501)
Q Consensus 407 ~i~iwd~ 413 (501)
...||.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 9888875
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=172.28 Aligned_cols=262 Identities=15% Similarity=0.145 Sum_probs=188.9
Q ss_pred cceeEEEEeecCCCCEEEEe--eCCCeEEEEecccc--ceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 114 EKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~--s~d~~i~lw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
-.+.+++|. . ...|+++ +.|+.+++|.-... +...+..... ....+........++.+|+
T Consensus 35 pg~~s~~w~--~-~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-------------d~~~Cv~~~s~S~y~~sgG 98 (673)
T KOG4378|consen 35 PGDFSFNWQ--R-RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-------------DNAFCVACASQSLYEISGG 98 (673)
T ss_pred Ccceeeecc--c-cceEEEeecCCceeEEEecccCCCCccceeecccc-------------chHHHHhhhhcceeeeccC
Confidence 559999996 2 3345555 47899999976543 2221111110 1111122222223444444
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC-cc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 267 (501)
. ++.+++||+.. ..+.+ ++.+|...|+++.++-...+|+++ ..|.|.|-.+.+... ... +.. ..
T Consensus 99 ~--~~~Vkiwdl~~---kl~hr-~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~-------f~~~sg 164 (673)
T KOG4378|consen 99 Q--SGCVKIWDLRA---KLIHR-FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTT-------FTIDSG 164 (673)
T ss_pred c--CceeeehhhHH---HHHhh-hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccc-------eecCCC
Confidence 3 77999999984 23334 348999999999999989999999 899999999884433 222 322 24
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-E-E
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S-R 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~-~ 345 (501)
..|+-+.|+|....+|.+++.+|.|.+||+...... ..+ ...|..+...++|+|....|+ + |
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~------------~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHA------------SEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cch------------hhhccCCcCcceecCCccceEEEec
Confidence 567799999988567888999999999999876533 111 234788999999999776554 3 3
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
-|..|++||++. .+....+...... ..++|+++|.+|+.|+..|.|..||+...+..+..+.+
T Consensus 229 ~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 229 YDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 579999999985 6666666543332 68999999999999999999999999998888899999
Q ss_pred ccCcccceeeccC
Q 010801 426 GKNENRKPILQAA 438 (501)
Q Consensus 426 ~~~~v~~~~~~~~ 438 (501)
|...|++++|.+.
T Consensus 292 h~~sVt~vafq~s 304 (673)
T KOG4378|consen 292 HDASVTRVAFQPS 304 (673)
T ss_pred cccceeEEEeeec
Confidence 9999999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=165.33 Aligned_cols=289 Identities=18% Similarity=0.217 Sum_probs=194.3
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~ 124 (501)
..+|++...|.|++||..+++.+ ..+++|. ..++.++|...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---------------------------~~fk~~~------------~~~N~vrf~~~ 81 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---------------------------EEFKGPP------------ATTNGVRFISC 81 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---------------------------heecCCC------------CcccceEEecC
Confidence 56899999999999999987653 7788888 88999999842
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
.....+.+|+.||+|++||++.......+..
T Consensus 82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~------------------------------------------------- 112 (376)
T KOG1188|consen 82 DSPHGVISCSSDGTVRLWDIRSQAESARISW------------------------------------------------- 112 (376)
T ss_pred CCCCeeEEeccCCeEEEEEeecchhhhheec-------------------------------------------------
Confidence 2456788999999999999987653332211
Q ss_pred eeeeeeEeecCCcc-cceEEEEecCCCCEEEEE-----cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC
Q 010801 205 VHARCQKVYPHAHD-FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (501)
Q Consensus 205 ~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 278 (501)
.++. .+..+++.+-.++.+++| .+-.|.+||++...+.+..+ .+.|...|+++.|+|.
T Consensus 113 ----------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 113 ----------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPS 176 (376)
T ss_pred ----------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCC
Confidence 2333 456677776677788876 37789999999766655543 6789999999999999
Q ss_pred CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--CEEEEEcCCcEEEEEee
Q 010801 279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 279 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~~~~~~~i~lwd~~ 356 (501)
.+++|++|+.||.|.+||+...........++.. ...|..+.|..++ +........+..+|+++
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999999999999999999876443333333333 5679999999888 53334456999999998
Q ss_pred CCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecC---CCC--cceEEEec-ccCc
Q 010801 357 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG---VGS--AGGITVEA-GKNE 429 (501)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~---~~~--~~~~~~~~-~~~~ 429 (501)
. +.+...+........... .......+.......++...+.++. -|...++-+. ++. .....+++ |..-
T Consensus 243 ~-~~~~~~~~~~~~~~~d~r---~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei 318 (376)
T KOG1188|consen 243 D-GSEETWLENPDVSADDLR---KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI 318 (376)
T ss_pred C-CChhhcccCccchhhhHH---hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH
Confidence 5 554444432211100000 0000000011111223444444443 5666666543 221 22455666 6677
Q ss_pred ccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 430 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
|+.+.|.. .+.+ +.+|+.||. .+|..
T Consensus 319 VR~i~~~~--~~~~-----l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 319 VRDILFDV--KNDV-----LYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHHhhhc--ccce-----eeccCCCceEEEEec
Confidence 77777765 4445 899999999 99963
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-23 Score=192.50 Aligned_cols=234 Identities=17% Similarity=0.289 Sum_probs=193.1
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.-|...|.|+..-..++.+++|+.|..+.+|....-. .+..|.+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------~i~S~~~he------- 70 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------AITSLTGHE------- 70 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCc---------------------------hhheeeccC-------
Confidence 3588999999997788999999999999999976432 335689999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
.+|.+|.|+ ++..+|++|+.+|+|++||++..+....+
T Consensus 71 -----spIeSl~f~--~~E~LlaagsasgtiK~wDleeAk~vrtL----------------------------------- 108 (825)
T KOG0267|consen 71 -----SPIESLTFD--TSERLLAAGSASGTIKVWDLEEAKIVRTL----------------------------------- 108 (825)
T ss_pred -----CcceeeecC--cchhhhcccccCCceeeeehhhhhhhhhh-----------------------------------
Confidence 999999997 67778889999999999999987644432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...+.++.|+|-+.++++| .|..+++||.+ ...+... +.+|.
T Consensus 109 --------------------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~-------~~s~~ 154 (825)
T KOG0267|consen 109 --------------------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHT-------YKSHT 154 (825)
T ss_pred --------------------------hccccCcceeeeccceEEeccccccccceehhhh-ccCceee-------ecCCc
Confidence 6999999999999999999998 99999999999 4445543 67799
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..+..+.|+|+| ++++.+++|..+++||+..++.. +.|. .|.+.+..+.|+|..-++++|+
T Consensus 155 ~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~----~ef~-------------~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 155 RVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS----KEFK-------------SHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred ceeEEEeecCCC-ceeeccCCcceeeeecccccccc----cccc-------------cccccccccccCchhhhhccCCC
Confidence 999999999999 99999999999999999988654 3444 4678999999999888888885
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
|+++++||+++ ...+.........+ .+..|+|+++.+.+|..+.
T Consensus 217 d~tv~f~dlet-fe~I~s~~~~~~~v---------------~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 217 DRTVRFWDLET-FEVISSGKPETDGV---------------RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred Cceeeeeccce-eEEeeccCCccCCc---------------eeeeecCCceeeecCchhh
Confidence 69999999986 45444444333332 7899999999988887653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-21 Score=164.88 Aligned_cols=252 Identities=17% Similarity=0.294 Sum_probs=169.6
Q ss_pred ccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+|..+.|.+++. .||||+.|..|+||.+..++.. ......++...+..|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------------------~~~~~V~y~s~Ls~H~--------- 65 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------------------GGDMKVEYLSSLSRHT--------- 65 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC------------------CCceeEEEeecccCCc---------
Confidence 46799999999776 9999999999999998866431 0113556778888998
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|++++|+ |+|..|++|+.+|.|.+|....-......+ ..
T Consensus 66 ---~aVN~vRf~--p~gelLASg~D~g~v~lWk~~~~~~~~~d~---e~------------------------------- 106 (434)
T KOG1009|consen 66 ---RAVNVVRFS--PDGELLASGGDGGEVFLWKQGDVRIFDADT---EA------------------------------- 106 (434)
T ss_pred ---ceeEEEEEc--CCcCeeeecCCCceEEEEEecCcCCccccc---hh-------------------------------
Confidence 899999998 899999999999999999876411100000 00
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
+-.- +...++..+.+|...|..++|+|++.+++++ .|+.+++||+. .++...+ +.+|...
T Consensus 107 --~~~k---------e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-------~~dh~~y 167 (434)
T KOG1009|consen 107 --DLNK---------EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-------LDDHEHY 167 (434)
T ss_pred --hhCc---------cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee-------ccccccc
Confidence 0000 0112222237899999999999999999999 99999999999 5666654 7889999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc-ceeecc--cccCCCc-ceee--ecccceeEEEEeeCCCEEE
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDA--AESHGSK-SFFT--EIIASISDIKFANDGQHLL 343 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~--~~~~~~~-~~~~--~h~~~i~~~~~sp~~~~l~ 343 (501)
+..++|.|.+ +++++-+.|...+.+.+...+...... ..+... .+..... +.+. ....-...++|+|||.+|+
T Consensus 168 vqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 168 VQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred cceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 9999999998 999999999877777766543332111 011110 0000000 0000 0123356788999999998
Q ss_pred EEc-----C-----CcEEEEEeeCCCCceeEeeccc
Q 010801 344 SRD-----Y-----MNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 344 ~~~-----~-----~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
+.. . +..++|+-....++...+....
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~ 282 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK 282 (434)
T ss_pred cccceeeeCCceeeceeEeeccccccCceeecCCCC
Confidence 642 1 3346665443345555554433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-21 Score=173.99 Aligned_cols=200 Identities=13% Similarity=0.139 Sum_probs=132.8
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~ 346 (501)
..|+.+.|+|-....|++++.||.|++|.+..+.+... ...+...+.+|...|+++.|+|= ...|++++
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~----------~~tPe~~lt~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN----------EMTPEKILTIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc----------cCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence 34677888886667899999999999999987654321 11223446678899999999994 45667665
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|.+|++||+++ .+....+.+|.+.+ .+++|||+|+.+|+.+.||+|++|+-..+.....+-++
T Consensus 698 yd~Ti~lWDl~~-~~~~~~l~gHtdqI---------------f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g 761 (1012)
T KOG1445|consen 698 YDSTIELWDLAN-AKLYSRLVGHTDQI---------------FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG 761 (1012)
T ss_pred ccceeeeeehhh-hhhhheeccCcCce---------------eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence 59999999996 88888999999865 79999999999999999999999998877554433333
Q ss_pred ccC-cccceeeccCCccccCccceeeeecccce-----eecccc----CCcc-cccccCCCeEEEEEccCCCEEEEee--
Q 010801 426 GKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-----HENSSS----GHHE-LSYNLSSKLLHLAWHPTTNLIACAN-- 492 (501)
Q Consensus 426 ~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~iw~~~----~~~~-~~~~~~~~i~~~~~sp~~~~la~~~-- 492 (501)
..+ .--.+.|.. +|++ ++..+.|+. .+++.. ..+. ..++....+.--.+.+|.+.|...+
T Consensus 762 pvgtRgARi~wac--dgr~-----viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 762 PVGTRGARILWAC--DGRI-----VIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred CccCcceeEEEEe--cCcE-----EEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCC
Confidence 222 111333333 7776 666655544 233111 1111 1112222233234556777666554
Q ss_pred CCeEEEEe
Q 010801 493 GNSLFFHY 500 (501)
Q Consensus 493 ~~~~~i~~ 500 (501)
+..+++|.
T Consensus 835 D~~v~~yE 842 (1012)
T KOG1445|consen 835 DRFVNMYE 842 (1012)
T ss_pred CceEEEEE
Confidence 34466664
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=158.85 Aligned_cols=321 Identities=14% Similarity=0.175 Sum_probs=211.1
Q ss_pred ccccceEEEEEcc-----CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec--cCCc
Q 010801 30 QDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEP 102 (501)
Q Consensus 30 ~h~~~v~~v~~s~-----~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 102 (501)
.|+.+|..++|++ +-+.+|+++. .++.||.....-. .+.+..+. .|+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------------ir~lq~y~D~d~~- 89 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------------IRLLQSYADEDHD- 89 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------------eeeeeeccCCCCC-
Confidence 5788999999995 3356677664 5788998764321 11222222 233
Q ss_pred chhhccccccccceeEEEEeecCC--CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCC
Q 010801 103 EFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (501)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~~~~--~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
+.-..++|+.+.. ..+++.++.-|.|+|.|+.++++....
T Consensus 90 -----------Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~--------------------------- 131 (385)
T KOG1034|consen 90 -----------ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY--------------------------- 131 (385)
T ss_pred -----------cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce---------------------------
Confidence 7788889985433 457888889999999999988755432
Q ss_pred CCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeec
Q 010801 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDM 258 (501)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 258 (501)
.+|...|+.+.+.|+. ++++++ .|..|++|+++ ...++.++
T Consensus 132 ----------------------------------~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf-- 174 (385)
T KOG1034|consen 132 ----------------------------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF-- 174 (385)
T ss_pred ----------------------------------eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe--
Confidence 6999999999999975 566777 99999999999 56666654
Q ss_pred CCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccccc-----CC---Cc---ceeeecc
Q 010801 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-----HG---SK---SFFTEII 327 (501)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~---~~---~~~~~h~ 327 (501)
..+++|...|.++.|+++| ..|++++.|.+|++|++...+........+.-.++. |. .. +.-.-|.
T Consensus 175 --GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 175 --GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred --cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence 3568999999999999999 899999999999999998654322111111110000 00 00 1123477
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..|.++.|- |.++++-+ ++.|..|....-.+.+............+..+.-..|-......+|.|-+++||.|...|
T Consensus 252 nyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 252 NYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred chHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 888888887 67888754 589999987211222222222222222222222222222224567777799999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCC
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
.|++||+++.+... +..... + ...+.|.+.+|+-|+.
T Consensus 330 ~v~vwdL~~~ep~~-----------~ttl~~---------------s-----------------~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPK-----------CTTLTH---------------S-----------------KSGSTVRQTSFSRDGS 366 (385)
T ss_pred cEEEEECCCCCCcc-----------CceEEe---------------c-----------------cccceeeeeeecccCc
Confidence 99999999774420 000000 0 1123688999999999
Q ss_pred EEEEeeCCe-EEEE
Q 010801 487 LIACANGNS-LFFH 499 (501)
Q Consensus 487 ~la~~~~~~-~~i~ 499 (501)
.|+..++++ +.-|
T Consensus 367 ~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRW 380 (385)
T ss_pred EEEEEeCCCcEEEE
Confidence 988888765 4444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=173.35 Aligned_cols=270 Identities=14% Similarity=0.114 Sum_probs=182.1
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
..|...|..+.|.|....|+++ .|.++++||++ +..+... ..+.+|...|.+++|.|..+..|++|+.||.|.
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 6899999999999966677888 99999999999 4444331 125789999999999999988999999999999
Q ss_pred EEEccCCcccc---cccceeecccccCCC-------cceeeecccceeE---EEEeeCCCEEEEEc--CCcEEEEEeeCC
Q 010801 294 LVDMRQSALCD---HSARILRDAAESHGS-------KSFFTEIIASISD---IKFANDGQHLLSRD--YMNLKLWDIRMD 358 (501)
Q Consensus 294 ~wd~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~h~~~i~~---~~~sp~~~~l~~~~--~~~i~lwd~~~~ 358 (501)
|||++-..... ...+....|+..+.+ ......+...|.+ +.+..|...||+++ |+.|+|||+++
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk- 249 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK- 249 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc-
Confidence 99998764110 001222222222211 1123445566666 66778888898764 69999999986
Q ss_pred CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc-ceEEEecccCcccceeecc
Q 010801 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA-GGITVEAGKNENRKPILQA 437 (501)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~ 437 (501)
........ .. ....-.+++..-.+++++.....|.+|.+.+.|+.|+.|++..... ....+.++...-..+.-..
T Consensus 250 ~~~~~r~e--p~--~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l 325 (720)
T KOG0321|consen 250 NYTAYRQE--PR--GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL 325 (720)
T ss_pred cccccccC--CC--cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeec
Confidence 32221111 00 0000112222233446788888889988888899999999986432 2344444444333333333
Q ss_pred CCccccCccceeeeecccce-eecccc---CCcccccccCCCeEEEEEccCCC-EEEEee-CCeEEEEe
Q 010801 438 APRARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLFFHY 500 (501)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~-~iw~~~---~~~~~~~~~~~~i~~~~~sp~~~-~la~~~-~~~~~i~~ 500 (501)
..++.+ +++|+.|.. .+|..+ .....+.+|...|++++|.|... -+|+++ +..+.||.
T Consensus 326 Spd~~~-----l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 326 SPDDCS-----LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCCce-----EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 347777 999999999 999444 45566789999999999988752 244446 45599986
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=163.26 Aligned_cols=268 Identities=14% Similarity=0.213 Sum_probs=185.1
Q ss_pred ccccceEEEEEccC----CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 30 ~h~~~v~~v~~s~~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
+|.+....++|+-+ ..+||.|+.-|.|+|.|+.+++.. ..+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~---------------------------~~~~ghG---- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS---------------------------KNYRGHG---- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc---------------------------cceeccC----
Confidence 46777889999764 347899999999999999987654 7788998
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|+.|+|+| .+.++++++|.|.+||+|++++..++.++...
T Consensus 136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~----------------------------- 177 (385)
T KOG1034|consen 136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV----------------------------- 177 (385)
T ss_pred --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEeccc-----------------------------
Confidence 8999999996 35579999999999999999999988776332
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe--eee---eeecC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFN---IVDMK 259 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~---~~~~~ 259 (501)
.+|.+.|.++.|+++|.+|+++ .|.++++|+++...- .+. .+..+
T Consensus 178 -----------------------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~ 228 (385)
T KOG1034|consen 178 -----------------------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN 228 (385)
T ss_pred -----------------------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC
Confidence 7999999999999999999998 999999999983210 000 00000
Q ss_pred -------------C--CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 260 -------------P--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 260 -------------~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
+ .+-.-|...|.|+.|- | +++++-+-++.|..|..-.-+.... .+... .........+.
T Consensus 229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~--~vkp~-es~~Ti~~~~~ 302 (385)
T KOG1034|consen 229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIH--NVKPP-ESATTILGEFD 302 (385)
T ss_pred CccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhh--ccCCC-ccceeeeeEec
Confidence 0 0123466677777775 4 6788888899999998732111000 00000 00000001112
Q ss_pred ecccceeEEEE--eeCCCEEEEEcC-CcEEEEEeeCCCCce-eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 325 EIIASISDIKF--ANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 325 ~h~~~i~~~~~--sp~~~~l~~~~~-~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
-....|.-+.| .|-++.||.|.. |.|++||++....+. .++..+.... .|...+|+.||.+|+
T Consensus 303 ~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~-------------tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 303 YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGS-------------TVRQTSFSRDGSILV 369 (385)
T ss_pred cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccc-------------eeeeeeecccCcEEE
Confidence 22344555544 566889999876 999999998633222 2222221111 127899999999999
Q ss_pred EEeCCCeEEEEecC
Q 010801 401 TGSYSNLLRIFSHG 414 (501)
Q Consensus 401 s~~~dg~i~iwd~~ 414 (501)
...+|++|.-||.-
T Consensus 370 ~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 370 LVCDDGTVWRWDRV 383 (385)
T ss_pred EEeCCCcEEEEEee
Confidence 99999999999853
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-22 Score=193.73 Aligned_cols=251 Identities=16% Similarity=0.164 Sum_probs=187.4
Q ss_pred ccceeEEEEeecCCC--CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 113 EEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~--~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+-+.++|.+..++ ..|+.|..||.|.+||...-..-.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~--------------------------------------- 104 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA--------------------------------------- 104 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCc---------------------------------------
Confidence 366889999842222 247778899999999987531000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
....+..+ ..|.+.|..+.|++.+. +|++| +||.|.|||++........ .-.....
T Consensus 105 ---------------~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~ 162 (1049)
T KOG0307|consen 105 ---------------SEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPS 162 (1049)
T ss_pred ---------------chHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcc
Confidence 00111122 68999999999999766 88899 9999999999954443321 0122457
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEE--
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-- 345 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~-- 345 (501)
.|.+++|+..-...|++++.+|.+.|||++..+.+. .+.. .+ -...+..++|+|+.. .|+++
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii----~ls~---~~--------~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII----KLSD---TP--------GRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCccc----cccc---CC--------CccceeeeeeCCCCceeeeeecC
Confidence 899999997765789999999999999999875432 1111 00 013578999999863 34443
Q ss_pred cC--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 346 DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 346 ~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
+| -.|.+||+|....+++++++|...+ .++.|++.+ .+|++++.|+.|.+|+.+++ +....
T Consensus 228 dd~~PviqlWDlR~assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~ 291 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGE 291 (1049)
T ss_pred CCCCceeEeecccccCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCc-eEeee
Confidence 34 6899999998788999999998876 799999965 89999999999999999998 55588
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
+....+++..+.|.|..++. ++..+.+|. .|+.
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~------~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSV------MAAASFDGKISIYS 325 (1049)
T ss_pred cCCCCcceeeeeecCCCcch------hhhheeccceeeee
Confidence 88899999999999975544 588888888 8883
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=151.53 Aligned_cols=208 Identities=16% Similarity=0.208 Sum_probs=156.9
Q ss_pred CCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCe-eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCe
Q 010801 215 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 215 ~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 291 (501)
..+.+++++..|+. +.+++.++ -|-+..|||++.+.. .+++ .+-.|...|..++|...+.++|++.+.||.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeEEEeccCccceEEEecCCCc
Confidence 45678999999976 66788888 899999999995411 1232 367899999999999977789999999999
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEE-cC-CcEEEEEeeCCCCceeEeecc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DY-MNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~-~~-~~i~lwd~~~~~~~~~~~~~~ 368 (501)
||+||+|..+.. .-+++. +. ...+...++|++. -+++|+- .| ..|.+.|++....++.++++|
T Consensus 221 vRmFDLR~leHS---TIIYE~-p~----------~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H 286 (364)
T KOG0290|consen 221 VRMFDLRSLEHS---TIIYED-PS----------PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH 286 (364)
T ss_pred EEEEEecccccc---eEEecC-CC----------CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence 999999975432 123333 11 1357888999974 4677764 34 899999999989999999999
Q ss_pred ccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccc
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS 447 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 447 (501)
...+ +.++|.|. ...|++++.|..+.|||+...-.. .-..++
T Consensus 287 ~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPi----------------- 329 (364)
T KOG0290|consen 287 QASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPI----------------- 329 (364)
T ss_pred cccc---------------cceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCch-----------------
Confidence 9977 79999996 568999999999999999854110 000000
Q ss_pred eeeeecccceeeccccCCcccccccCCCeEEEEEccC-CCEEEEeeCCeEEEE
Q 010801 448 NLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANGNSLFFH 499 (501)
Q Consensus 448 ~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~-~~~la~~~~~~~~i~ 499 (501)
|+ ......|+.++|+|. ..+++++..+.+-+.
T Consensus 330 -la-------------------y~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 330 -LA-------------------YTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred -hh-------------------hhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 11 123458999999965 689999998887664
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=165.16 Aligned_cols=267 Identities=17% Similarity=0.196 Sum_probs=181.2
Q ss_pred eEEEEEcc-------CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 35 VSAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 35 v~~v~~s~-------~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|++|-. .|+|+|.|+.|..|-|||+.--...-+.-.+...+..... -..+--..-++|+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~------k~~k~~~~~~gHT------ 243 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKK------KKGKRSNSASGHT------ 243 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhh------hhcccccccccch------
Confidence 35566543 3689999999999999998732221000000000000000 0000001234677
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.++.|+. --.+.|++||.|.+|++||+.++++...+
T Consensus 244 ------davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s~---------------------------------- 282 (463)
T KOG0270|consen 244 ------DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSSI---------------------------------- 282 (463)
T ss_pred ------HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCcceeh----------------------------------
Confidence 8899999973 34568999999999999999999876654
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..|...|.+++|+|. ...|++| .|++|.+.|.+.....-.. -.
T Consensus 283 ---------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--------wk 327 (463)
T KOG0270|consen 283 ---------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--------WK 327 (463)
T ss_pred ---------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--------EE
Confidence 578899999999885 5677888 9999999999843222211 12
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE-EEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~~ 344 (501)
..+.|-.++|+|.....++++..||+|+-+|+|+... .+|.. ..|..+|.++++++.-.. +++
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~-----------~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTL-----------KAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEE-----------EeccCCcceEEecCCCCcceee
Confidence 3567899999999877889999999999999998642 23333 558899999999987654 555
Q ss_pred E-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCCCcc
Q 010801 345 R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 345 ~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
+ +++.|++|++.. ..+ .....|.-....+ .++++.|+-. +|+.|+..+.++|||+.+....
T Consensus 392 ~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 5 469999999974 332 1222233222111 4677777643 5778888889999999887544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=174.65 Aligned_cols=270 Identities=13% Similarity=0.188 Sum_probs=205.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.+-+.|+|. ++|.+|++++.||.|++|+..... .-...
T Consensus 14 ~G~t~i~~d--~~gefi~tcgsdg~ir~~~~~sd~e~P~ti--------------------------------------- 52 (933)
T KOG1274|consen 14 GGLTLICYD--PDGEFICTCGSDGDIRKWKTNSDEEEPETI--------------------------------------- 52 (933)
T ss_pred CceEEEEEc--CCCCEEEEecCCCceEEeecCCcccCCchh---------------------------------------
Confidence 778999996 899999999999999999876542 10000
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
..++..|.+++.. +..|++| .+++|.+|.+..... -.+ +....-+++
T Consensus 53 ----------------------~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~-~~i-------L~Rftlp~r 100 (933)
T KOG1274|consen 53 ----------------------DISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE-DTI-------LARFTLPIR 100 (933)
T ss_pred ----------------------hccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc-cce-------eeeeeccce
Confidence 2255667776653 4478888 999999999884332 221 445667899
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
+++|+.+| ++++.|+.|-.|++-++...... +.+ .+|.++|.++.|+|++++||+.+ +|.|
T Consensus 101 ~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~----~~l-------------rgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 101 DLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQE----KVL-------------RGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred EEEEecCC-cEEEeecCceeEEEEeccccchh----eee-------------cccCCceeeeeEcCCCCEEEEEecCceE
Confidence 99999999 99999999999999998876533 333 45889999999999999999874 7999
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE--ecccC
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV--EAGKN 428 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~ 428 (501)
++||+.. +....++.+-....... ...+ +..++|+|+|..++....|+.|++|+..+.... ..+ +-+..
T Consensus 163 ~iw~~~~-~~~~~tl~~v~k~n~~~-----~s~i--~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-f~Lr~~~~ss 233 (933)
T KOG1274|consen 163 QIWDLQD-GILSKTLTGVDKDNEFI-----LSRI--CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-FKLRDKLSSS 233 (933)
T ss_pred EEEEccc-chhhhhcccCCcccccc-----ccce--eeeeeecCCCCeEEeeccCCeEEEEccCCceeh-eeeccccccc
Confidence 9999985 77766665432211000 0011 168999999888999999999999999887444 333 33444
Q ss_pred cccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
.+..+.|+| +|++ ||.+..++. .+|+.+.+.. ..+...|.+++|.|+.+.|-+-.
T Consensus 234 ~~~~~~wsP--nG~Y-----iAAs~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 234 KFSDLQWSP--NGKY-----IAASTLDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred ceEEEEEcC--CCcE-----EeeeccCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEe
Confidence 488899999 7999 999999999 9998877433 56778999999999999877654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=171.47 Aligned_cols=233 Identities=18% Similarity=0.285 Sum_probs=173.6
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
.|..++|-|||..|+.+. +..+.|||...|... .++++|.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll---------------------------qtLKgHK------------ 53 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL---------------------------QPLKGHK------------ 53 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccc---------------------------ccccccc------------
Confidence 799999999999888765 558999999977654 7899999
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|++++|+ .||+++++|+.|+.|.+|..+-....+
T Consensus 54 DtVycVAys--~dGkrFASG~aDK~VI~W~~klEG~Lk------------------------------------------ 89 (1081)
T KOG1538|consen 54 DTVYCVAYA--KDGKRFASGSADKSVIIWTSKLEGILK------------------------------------------ 89 (1081)
T ss_pred ceEEEEEEc--cCCceeccCCCceeEEEecccccceee------------------------------------------
Confidence 999999998 899999999999999999865433221
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
..|.+.|.|+.|+|-...|+++.=...-+|... .+...+ ......+.+.
T Consensus 90 ---------------------YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~-qK~V~K---------~kss~R~~~C 138 (1081)
T KOG1538|consen 90 ---------------------YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE-QKSVSK---------HKSSSRIICC 138 (1081)
T ss_pred ---------------------eccCCeeeEeecCchHHHhhhcchhhccccChh-hhhHHh---------hhhheeEEEe
Confidence 589999999999999999999855567788876 332221 2234678899
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-----CEEEEEcC-
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----QHLLSRDY- 347 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-----~~l~~~~~- 347 (501)
+|..|| ++|+.|-.||+|.+-+-.. +.. .++-.. .|...+|.+++|+|.. ..+++.+-
T Consensus 139 sWtnDG-qylalG~~nGTIsiRNk~g-Eek---~~I~Rp-----------gg~Nspiwsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 139 SWTNDG-QYLALGMFNGTISIRNKNG-EEK---VKIERP-----------GGSNSPIWSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred eecCCC-cEEEEeccCceEEeecCCC-Ccc---eEEeCC-----------CCCCCCceEEEecCCCCCCccceEEEEecc
Confidence 999999 9999999999999875332 211 122111 1235789999999963 34555543
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.++.+|.+. ++.+..-+.... +..++.+-++|.++..|+.|+.+++|--+
T Consensus 203 qTLSFy~Ls--G~~Igk~r~L~F---------------dP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 203 QTLSFYQLS--GKQIGKDRALNF---------------DPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred ceeEEEEec--ceeecccccCCC---------------CchhheeccCCcEEEEccCCCceEEEeec
Confidence 677777774 554432221111 11578999999999999999999999654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-19 Score=168.02 Aligned_cols=395 Identities=15% Similarity=0.124 Sum_probs=250.9
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 36 ~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
....||+|+++++..+ +..|.||...++++. +.+.+|. ++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i---------------------------~~l~~~~------------a~ 59 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECI---------------------------TSLEDHT------------AP 59 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhh---------------------------hhccccc------------Cc
Confidence 4567999999988765 568999999999875 6788999 88
Q ss_pred eeEEEEeecCCC-CEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc-----------Cccc---cCCCC
Q 010801 116 INRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-----------NFMN---EHNPP 180 (501)
Q Consensus 116 V~~v~~~~~~~~-~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~~~ 180 (501)
+..+.+.|.+.. .++.+++.||.|++||...+.+.++...+.+....-........ .+.. .+...
T Consensus 60 l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~ 139 (792)
T KOG1963|consen 60 LTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSK 139 (792)
T ss_pred cceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeeccccccc
Confidence 999999865544 57778999999999999999888776654433211110000000 0000 00000
Q ss_pred C-------------Ccccccc------eecc---------CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE
Q 010801 181 S-------------FAHGYHL------EWTE---------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET 232 (501)
Q Consensus 181 ~-------------~~~~~~~------~~~~---------~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 232 (501)
. ..++... .... +-.+.+|.........+.+.....|.-.+++.+++|++++
T Consensus 140 q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~ 219 (792)
T KOG1963|consen 140 QSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY 219 (792)
T ss_pred ceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce
Confidence 0 0000000 0011 1134566666544333444333567777899999999999
Q ss_pred EEEE-cCCeEEEEECCC-CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010801 233 FVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (501)
Q Consensus 233 l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 310 (501)
+++| .||.|.+|.--. ...... ...+.=|...|.+++|+++| .+|++|+..|.+-+|.+.+++. +.+
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t-----~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qfL 288 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSET-----CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QFL 288 (792)
T ss_pred EEEeccCCcEEEEecccccccccc-----ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----ccc
Confidence 9999 999999996431 111111 01245588899999999999 9999999999999999988762 111
Q ss_pred ecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeE-------------------------
Q 010801 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVAT------------------------- 364 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~------------------------- 364 (501)
+...++|..+.++||+.+.+.. .|+.|.+..... .....+
T Consensus 289 -------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 289 -------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred -------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEc
Confidence 2235789999999999887754 678998887532 111111
Q ss_pred -------eeccccccccccccCCCCCcc------------------eeeEEEEcCCCcEEEEEeC--------C--CeEE
Q 010801 365 -------FKIHEHLRPKLCDLYNNDSIF------------------DKFECSVSGDGLHFATGSY--------S--NLLR 409 (501)
Q Consensus 365 -------~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~s~~~~~l~s~~~--------d--g~i~ 409 (501)
+.+|...+ .+.++|.+..++ .++.++.+-.|.+++|+-. | -.++
T Consensus 355 pr~~~~vln~~~g~v-Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHV-QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred CCCCceeecCCCceE-EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 11222211 111122222221 2345555556777776542 2 2467
Q ss_pred EEecCCCCcc----eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcc----------ccccc
Q 010801 410 IFSHGVGSAG----GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHE----------LSYNL 472 (501)
Q Consensus 410 iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~----------~~~~~ 472 (501)
+|-......- ......|...+...++.+...... +++.+.++. ++|.. +.... ...-|
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~-----~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVR-----CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccce-----eEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 7866543221 234457888888888877544434 799999999 99932 11111 01125
Q ss_pred CCCeEEEEEccCCCEEEEeeCCeEEEEeC
Q 010801 473 SSKLLHLAWHPTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 501 (501)
..++++.+|+.||..||++.++.+.+|+.
T Consensus 509 k~~i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 509 KTPITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred cCcccchhhcCCCcEEEEecCCEEEEecC
Confidence 77999999999999999999999999973
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-20 Score=158.08 Aligned_cols=270 Identities=12% Similarity=0.075 Sum_probs=182.6
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcchh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD 105 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~ 105 (501)
...+|.+.|+++.||.++++||+|+.|..+++|+++.--. ....+++... ..|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------------~k~~KPI~~~~~~H~---- 105 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------------RKTPKPIGVMEHPHR---- 105 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh---------------------hcCCCCceeccCccc----
Confidence 3467999999999999999999999999999999873211 0011222222 2244
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.|++|. ....++.+|..+++|.+-|+++.+.+.+...
T Consensus 106 --------SNIF~L~F~--~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~------------------------------ 145 (609)
T KOG4227|consen 106 --------SNIFSLEFD--LENRFLYSGERWGTVIKHDIETKQSIYVANE------------------------------ 145 (609)
T ss_pred --------cceEEEEEc--cCCeeEecCCCcceeEeeecccceeeeeecc------------------------------
Confidence 789999996 6778899999999999999998775443211
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
....+.|+.+..+|-.+.|++. +++.|.+||.+........+ -+.
T Consensus 146 -----------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~A 191 (609)
T KOG4227|consen 146 -----------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----LPA 191 (609)
T ss_pred -----------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----eec
Confidence 2334589999999988888887 99999999998443233221 022
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
........+.|+|..+.+|++.+..+-+.+||++...........+.+ ++.....-+++.|+|+|..+.+
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----------L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----------LPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc----------CcccchhhhheeeCCCCCeehh
Confidence 344567889999999899999999999999999875432110011111 0111123477889999988876
Q ss_pred EcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 345 ~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
-.- ..-.+||+-...-++..+......- -+.+. +.+++|..|- -+++|+.+-.|++|.+..
T Consensus 262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY-------~N~~T--~KS~~F~~D~-~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQRCFVLKSDHNPNGY-------CNIKT--IKSMTFIDDY-TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred hhccCCCEEeeeecccceeEeccCCCCcc-------eeeee--eeeeeeecce-eeeccCcccceEEEecCC
Confidence 543 5566788874223333333111111 11111 1578887664 499999999999999854
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=156.14 Aligned_cols=292 Identities=16% Similarity=0.253 Sum_probs=194.6
Q ss_pred hhhhhhccCCCCCCccccccceEEEEEcc-----CCCEEEEE---ecCCcEEEEEec-CCcCCCCccchhhhhhhccccc
Q 010801 14 WKCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAVG---DRGGRVILFETV-GGKNTPNQHISRSELEKQMDFT 84 (501)
Q Consensus 14 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-----~g~~latg---~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (501)
-++.+.|+....-+.--..-+|+.++|.. +.+|||.- +..|...|.-+. +|+.
T Consensus 9 SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~------------------ 70 (472)
T KOG0303|consen 9 SKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRM------------------ 70 (472)
T ss_pred hhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeeccccccccc------------------
Confidence 46778888766554444455677777754 34555542 122233333222 1111
Q ss_pred cCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccc
Q 010801 85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (501)
Q Consensus 85 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~ 164 (501)
..-.-.+.||+ ++|..++|+| .++..+++||.|.+|.||++..+......
T Consensus 71 ------d~~~P~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~l----------- 120 (472)
T KOG0303|consen 71 ------DASYPLVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDL----------- 120 (472)
T ss_pred ------CCCCCCccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCc-----------
Confidence 11123467899 9999999997 57789999999999999999876543321
Q ss_pred cccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEE
Q 010801 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRIN 242 (501)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~ 242 (501)
.+++..+ .+|...|--++|+|.. +.|+++ .|++|.
T Consensus 121 ------------------------------------------tepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 121 ------------------------------------------TEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred ------------------------------------------ccceEEE-eecceeEEEEeecccchhhHhhccCCceEE
Confidence 1233333 7999999999999964 456666 999999
Q ss_pred EEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 243 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
+||+.++...+. +. |...|+++.|+.+| .+|++.+.|..|++||.++++..... ...++
T Consensus 158 iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-~~heG---------- 216 (472)
T KOG0303|consen 158 IWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEG---------- 216 (472)
T ss_pred EEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-ccccC----------
Confidence 999996665554 34 99999999999999 99999999999999999998755211 11111
Q ss_pred eeecccceeEEEEeeCCCEEEEE----cCCcEEEEEeeCCCCcee--EeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 323 FTEIIASISDIKFANDGQHLLSR----DYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~----~~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
..-..+.|-.+|.++.+| ++.++-|||...-.+++. ++....+. .---|.+|.
T Consensus 217 -----~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv----------------l~PFyD~dt 275 (472)
T KOG0303|consen 217 -----AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV----------------LLPFYDPDT 275 (472)
T ss_pred -----CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCce----------------EEeeecCCC
Confidence 345566788889966666 248999999876455532 23222221 223456776
Q ss_pred cEEE-EEeCCCeEEEEecCCCCcceEEEe--cccCcccceeeccC
Q 010801 397 LHFA-TGSYSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAA 438 (501)
Q Consensus 397 ~~l~-s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~ 438 (501)
+++. +|-.|+.||-|.+.+.......+. ....+-+.+.+.|.
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 6655 566799999999987654444443 23445555555553
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=173.96 Aligned_cols=308 Identities=12% Similarity=0.148 Sum_probs=205.1
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
....+.|+|-...+++++..-.|+|||.+.++.+ ..|..+.+. .
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l---------------------------~~F~n~~~~---------~ 1109 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL---------------------------NGFDNGAFP---------D 1109 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee---------------------------ccccCCCCC---------C
Confidence 5678999998889999987789999999987653 333333322 1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecccc---ceeeeeccCCCcccccccccccccCccccCCCC-CCcccccce
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLE 189 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (501)
..|+.+++....|..++++|+.||.||||+-... +...+.....-. +........+ .-+.+-. ++..+.+|.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls---~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLS---DQLPGARGTG-LVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccc---ccCccCCCCC-eeeehhhhCCeEEecCC
Confidence 7799999987777889999999999999975432 211111111000 0000000011 1111111 222233332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEec-CCCCEEEEE-cCCeEEEEECCCCCe--eeeeeecCCCCCCC
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD 265 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~ 265 (501)
-..|++||.+.. .+......+....|++++-+ ..|+.+++| .||.|++||.+.... .+. ....
T Consensus 1186 ---~r~IRIWDa~~E---~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~-------~~R~ 1252 (1387)
T KOG1517|consen 1186 ---VRSIRIWDAHKE---QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC-------VYRE 1252 (1387)
T ss_pred ---eeEEEEEecccc---eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce-------eecc
Confidence 348999999963 23333334566677777653 357899999 999999999985443 222 2456
Q ss_pred cccc--eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 266 LTEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 266 ~~~~--v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
|+.. |..+.+.+.|-..|++|+.||.|++||+|... ......+... ....+.++++..++....+|
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~-----------~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAH-----------WEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeec-----------cccCccceeeeeccCCCeee
Confidence 7766 99999999884569999999999999999852 1111111110 00123599999999999999
Q ss_pred EEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 344 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 344 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+|+.+.|+||++. ++.+..+..+..... ..+..+.+++|+|-.-+||+|+.|..|.||.....
T Consensus 1321 sGs~q~ikIy~~~--G~~l~~~k~n~~F~~--------q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1321 SGSAQLIKIYSLS--GEQLNIIKYNPGFMG--------QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecCcceEEEEecC--hhhhcccccCccccc--------CcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 9988999999996 666666664443321 12223379999999999999999999999988754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=165.06 Aligned_cols=223 Identities=14% Similarity=0.173 Sum_probs=177.7
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
+.-.|++......|+++|+..+.|+|||+....+ .+.+++|.
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~---------------------------hr~lkdh~----------- 121 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI---------------------------HRFLKDHQ----------- 121 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHH---------------------------hhhccCCc-----------
Confidence 3455666656668999999999999999984433 36688998
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..|++|.++ -.+.+|++++..|.|.|..+.++.....++
T Consensus 122 -stvt~v~YN--~~DeyiAsvs~gGdiiih~~~t~~~tt~f~-------------------------------------- 160 (673)
T KOG4378|consen 122 -STVTYVDYN--NTDEYIASVSDGGDIIIHGTKTKQKTTTFT-------------------------------------- 160 (673)
T ss_pred -ceeEEEEec--CCcceeEEeccCCcEEEEecccCcccccee--------------------------------------
Confidence 899999997 677899999999999999988876333221
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+....|+-+.|+|..+.+++ + ++|.|.+||+. +...+.. -...|..+.
T Consensus 161 ----------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~------~~~~HsAP~ 211 (673)
T KOG4378|consen 161 ----------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFH------ASEAHSAPC 211 (673)
T ss_pred ----------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccc------hhhhccCCc
Confidence 233456678899998887765 5 99999999999 4333322 257899999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-Cc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~ 349 (501)
..|+|+|..+.+|++.+.|..|.+||++..... ..+.. ..+...++|+++|.+|++|+. |.
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y--------------~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTY--------------SHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccccccc----ceeee--------------cCCcceeeecCCceEEEeecCCce
Confidence 999999998789999999999999999976544 23332 358999999999999999965 99
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
|..||++....++..+..|...+ ++++|-|..
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sV---------------t~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASV---------------TRVAFQPSP 305 (673)
T ss_pred EEEEecccCCCCceEeeecccce---------------eEEEeeecc
Confidence 99999998788999999998876 788887654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=169.52 Aligned_cols=274 Identities=13% Similarity=0.149 Sum_probs=191.6
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...|.+.|+.++|.|....|++++.||++++|+++... ....-..+++.+|++|.
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-------------------~s~~~~~epi~tfraH~------ 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-------------------KSAEKDVEPILTFRAHE------ 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-------------------CccccceeeeEEEeccc------
Confidence 44689999999999999999999999999999994321 11223667889999999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
++|.|++.. +++..+++|+-||+|+.|++.... ...-.+
T Consensus 345 ------gPVl~v~v~--~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds~-------------------------------- 383 (577)
T KOG0642|consen 345 ------GPVLCVVVP--SNGEHCYSGGIDGTIRCWNLPPNQ-DPDDSY-------------------------------- 383 (577)
T ss_pred ------CceEEEEec--CCceEEEeeccCceeeeeccCCCC-Cccccc--------------------------------
Confidence 999999997 789999999999999999876321 000000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
| ...+...+.||.+.|+.+++++....|+++ .||++++|+...... .++. .-..|
T Consensus 384 ------------d------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~----~~~e~ 439 (577)
T KOG0642|consen 384 ------------D------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFG----EPKEH 439 (577)
T ss_pred ------------C------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccC----Ccccc
Confidence 0 000111127999999999999998899999 999999999873333 1110 01122
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
+...++.+-.....+.++ +.....+++...+... ..+++.. ...+..+. ...+..+.++|.+.+.+++.
T Consensus 440 -g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s-~~~~~~s-~~~~~~~~-----~~~in~vVs~~~~~~~~~~h 508 (577)
T KOG0642|consen 440 -GYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVS-DLLIFES-SASPGPRR-----YPQINKVVSHPTADITFTAH 508 (577)
T ss_pred -CCcceEeeccchhHhhhh---hcccccccchhhhhhh-heeeccc-cCCCcccc-----cCccceEEecCCCCeeEecc
Confidence 233555555433122222 3334444443332221 1133333 22222211 24688899999998888874
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++.|+++|..+ +.++.....|...+ +++++.|+|.+|++|+.||.+++|.++...+
T Consensus 509 ed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 509 EDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cCCceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhccchhe
Confidence 59999999987 99999998888766 7999999999999999999999999976533
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=184.77 Aligned_cols=261 Identities=16% Similarity=0.244 Sum_probs=196.4
Q ss_pred CCCCccccccceEEEEEccCCCE----EEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc
Q 010801 24 NPDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS 99 (501)
Q Consensus 24 ~~~~~~~h~~~v~~v~~s~~g~~----latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (501)
.+...++-..+.+.++|.+.|.. ||.|.+||.|.+||...-.. ......+.....
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------NASEEVLATKSK 114 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------CcchHHHhhhcc
Confidence 34555666788999999998766 89999999999999775211 113345567788
Q ss_pred CCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCC
Q 010801 100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (501)
Q Consensus 100 h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
|+ +.|..+.|++ -.+++|++|+.||.|.|||+..-+.-....
T Consensus 115 h~------------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~------------------------- 156 (1049)
T KOG0307|consen 115 HT------------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG------------------------- 156 (1049)
T ss_pred cC------------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC-------------------------
Confidence 88 9999999985 345699999999999999998743111100
Q ss_pred CCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeee
Q 010801 180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (501)
...-...|.+++|+..- ..|+++ .+|.+.|||++..+..++
T Consensus 157 ----------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~--- 199 (1049)
T KOG0307|consen 157 ----------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK--- 199 (1049)
T ss_pred ----------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc---
Confidence 02346789999998754 455667 899999999996655554
Q ss_pred cCCCCCCCcc--cceEEEEEecCCCcEEEEEeCCC---eEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 258 MKPSNMDDLT--EVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 258 ~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
+..+. ..+..++|+|++...+++++.|. .|.+||+|...... ++++ +|...|.+
T Consensus 200 -----ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~---k~~~-------------~H~~Gils 258 (1049)
T KOG0307|consen 200 -----LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL---KILE-------------GHQRGILS 258 (1049)
T ss_pred -----cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch---hhhc-------------ccccceee
Confidence 33332 35789999999877888888754 59999998754321 3443 47889999
Q ss_pred EEEeeCC-CEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEE
Q 010801 333 IKFANDG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLR 409 (501)
Q Consensus 333 ~~~sp~~-~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~ 409 (501)
+.|++.+ .+|+++ -|+.|.+|+.++ ++.+..+....... +.+.|+|... .+++.+.||.|-
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhheecccee
Confidence 9999976 666665 579999999997 88888887755554 6899999765 788899999999
Q ss_pred EEecCCCC
Q 010801 410 IFSHGVGS 417 (501)
Q Consensus 410 iwd~~~~~ 417 (501)
|+.+.+..
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99998764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=158.88 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=151.9
Q ss_pred CCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeE
Q 010801 215 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 292 (501)
.+|+..|.+++|+..-+ .|++| .|.+|++||+. .+++..+ +..|...|.++.|+|..+..|++|+.|++|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-~g~p~~s-------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD-TGKPKSS-------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcC-CCCccee-------hhhcCCceeEEEecCCCceEEEeccccceE
Confidence 57999999999987654 56777 99999999999 5555543 678999999999999988999999999999
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE-EEEEc-CCcEEEEEeeCCCCceeEeecccc
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
.+.|.|...... +.|.. .+.|-.++|.|.... +++++ ||.|+-+|+|..++++.+++.|..
T Consensus 312 ~l~D~R~~~~s~---~~wk~--------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 312 ALKDCRDPSNSG---KEWKF--------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred EeeeccCccccC---ceEEe--------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC
Confidence 999999632221 34443 467999999997654 34554 599999999998899999999999
Q ss_pred ccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecccC---cccceeeccCCccccCcc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---ENRKPILQAAPRARRSSL 446 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~ 446 (501)
.+ .++++++. ..+|++++.|+.|++|++...... ....|.- ...+.++.|..+ ..
T Consensus 375 ~I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a-~~--- 433 (463)
T KOG0270|consen 375 EI---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVA-FT--- 433 (463)
T ss_pred Cc---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcc-eE---
Confidence 87 67888875 457899999999999999764331 1222221 133444445422 23
Q ss_pred ceeeeecccce-eecccc
Q 010801 447 SNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 447 ~~l~~~~~~~~-~iw~~~ 463 (501)
++.|+..+. ++|+..
T Consensus 434 --la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 434 --LAFGGEKAVLRVWDIF 449 (463)
T ss_pred --EEecCccceEEEeecc
Confidence 788888887 999443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=147.91 Aligned_cols=248 Identities=14% Similarity=0.140 Sum_probs=173.8
Q ss_pred CCcccceEEEEecCCCC-EEEEE-c---C----CeEEEEECCCCCeeeeeeecC-CCCCC-CcccceEEEEEecCCCcEE
Q 010801 215 HAHDFNINSISNNSDCE-TFVSA-D---D----LRINLWNLEISDQCFNIVDMK-PSNMD-DLTEVITSAEFHPIYCNLL 283 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~-~l~~~-~---d----~~i~iwd~~~~~~~~~~~~~~-~~~~~-~~~~~v~~v~~~p~~~~~l 283 (501)
..|.+.|+.++-+|-.+ .|+++ . | -.+.||.+...........+. ...+. .+-+.|.|+.|.|++ ..+
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~kl 138 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DKL 138 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-Cee
Confidence 56778899999888544 45554 3 1 257799887432221000000 01122 344589999999998 777
Q ss_pred EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee--CCCEEEEEcCCcEEEEEeeCCCCc
Q 010801 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDYMNLKLWDIRMDSTP 361 (501)
Q Consensus 284 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~~~~~~~i~lwd~~~~~~~ 361 (501)
++-. |..|.+|++..+.........-.. .+|....++-+|+| ||..+++.+++++..||+++..+.
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~ss~s-----------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLSSES-----------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred EEec-cCceEEEEcccCcchheeeccccc-----------ccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 7655 889999999887643211111111 12456788889998 789999999999999999984444
Q ss_pred eeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCc
Q 010801 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440 (501)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 440 (501)
...-..|...+ ..+.|.|+.+ +|++++.||.|+|||....+..++++.+|..+++++.|.|.-
T Consensus 207 ~sI~dAHgq~v---------------rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h- 270 (370)
T KOG1007|consen 207 NSIEDAHGQRV---------------RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH- 270 (370)
T ss_pred cchhhhhccee---------------eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc-
Confidence 44445666554 7899999865 578999999999999998888899999999999999999974
Q ss_pred cccCccceeeeecccce-eec---ccc----------------------------CCcccccccCCCeEEEEEccCCCEE
Q 010801 441 ARRSSLSNLTRGLYRQA-HEN---SSS----------------------------GHHELSYNLSSKLLHLAWHPTTNLI 488 (501)
Q Consensus 441 ~~~~~~~~l~~~~~~~~-~iw---~~~----------------------------~~~~~~~~~~~~i~~~~~sp~~~~l 488 (501)
..+ +.+|+.|.. .+| ... +.+....+|+..|.+++||....++
T Consensus 271 dqL-----iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 271 DQL-----ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ceE-----EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 344 678888877 777 111 1112345789999999999999886
Q ss_pred E-EeeCCeE
Q 010801 489 A-CANGNSL 496 (501)
Q Consensus 489 a-~~~~~~~ 496 (501)
+ +-+.||-
T Consensus 346 FASLSYDGR 354 (370)
T KOG1007|consen 346 FASLSYDGR 354 (370)
T ss_pred EEEeccCce
Confidence 5 4456663
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-18 Score=138.05 Aligned_cols=262 Identities=15% Similarity=0.158 Sum_probs=179.2
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..|.+-+++|.+++|+.|..+|.|.++.+..-... ....+.-..+..+++|+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----------------sa~~~gk~~iv~eqahd----------- 62 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----------------SAEPPGKLKIVPEQAHD----------- 62 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----------------ccCCCCCcceeeccccC-----------
Confidence 44667789999999999999999999998743221 01112223445568999
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
++|+.++|. +.+|++|+ ||.|+-|..+.....
T Consensus 63 -gpiy~~~f~----d~~Lls~g-dG~V~gw~W~E~~es------------------------------------------ 94 (325)
T KOG0649|consen 63 -GPIYYLAFH----DDFLLSGG-DGLVYGWEWNEEEES------------------------------------------ 94 (325)
T ss_pred -CCeeeeeee----hhheeecc-CceEEEeeehhhhhh------------------------------------------
Confidence 999999995 34666665 599999987654321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
.+.-++|.+....... ...--.|+++...|..+-++.+ .|+.++-||++ .++..+. +.+|+..|.
T Consensus 95 ~~~K~lwe~~~P~~~~------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~-------~rGHtDYvH 160 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVD------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE-------YRGHTDYVH 160 (325)
T ss_pred ccchhhhhhcCccccC------cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE-------EcCCcceee
Confidence 1222344444321110 1123467888888866656555 99999999999 5555554 799999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec-ccceeEEEEeeCCCEEEEEcCCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDYMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~~~~~~~i 350 (501)
++.-.... ..+++|++||++|+||.++++.. ++++....+. .++.| ..+|.+++.+ ..+|++|....+
T Consensus 161 ~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~yk~~~----~lRp~~g~wigala~~--edWlvCGgGp~l 229 (325)
T KOG0649|consen 161 SVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPYKNPN----LLRPDWGKWIGALAVN--EDWLVCGGGPKL 229 (325)
T ss_pred eeeecccC-cceeecCCCccEEEEecccccee----EEeccccChh----hcCcccCceeEEEecc--CceEEecCCCce
Confidence 99985554 67999999999999999998654 4444311111 11112 2456666654 679999988899
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.+|.++. .++...+...... ..+.|.. ..+++++..+.|.-|.+.
T Consensus 230 slwhLrs-se~t~vfpipa~v----------------~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 230 SLWHLRS-SESTCVFPIPARV----------------HLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEeccC-CCceEEEecccce----------------eEeeeec--ceEEEeccccceeeeeec
Confidence 9999996 7777776644332 4577753 467788887889989875
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=147.10 Aligned_cols=199 Identities=16% Similarity=0.256 Sum_probs=148.1
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
..++.|+ +.|.+|++|+.||.|.+||+.+....+++
T Consensus 26 a~~~~Fs--~~G~~lAvGc~nG~vvI~D~~T~~iar~l------------------------------------------ 61 (405)
T KOG1273|consen 26 AECCQFS--RWGDYLAVGCANGRVVIYDFDTFRIARML------------------------------------------ 61 (405)
T ss_pred cceEEec--cCcceeeeeccCCcEEEEEccccchhhhh------------------------------------------
Confidence 6889998 78999999999999999999887643332
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEE
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 274 (501)
.+|..+|.+++|++||+.|+++ .|..|.+||+..+. +++.+ ....+|+.+.
T Consensus 62 -------------------saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~ri--------rf~spv~~~q 113 (405)
T KOG1273|consen 62 -------------------SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRI--------RFDSPVWGAQ 113 (405)
T ss_pred -------------------hccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEE--------EccCccceee
Confidence 7899999999999999999999 99999999999554 44432 2457899999
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 353 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lw 353 (501)
|+|...+..++.-.+..-.+-++..+.. ..+.. . .... ....-.+..|.+.|++|++|+. |.+.++
T Consensus 114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~-d-~d~d------ln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 114 WHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPK-D-DDGD------LNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred eccccCCeEEEEEecCCcEEEEecCCce-----eeccC-C-Cccc------cccccccccccCCCCEEEEecCcceEEEE
Confidence 9998755555554454455555544321 11211 0 0000 0112233468899999999976 999999
Q ss_pred EeeCCCCceeEeeccc-cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 354 DIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
|..+ .+++..++... .. +..+.++..|++|+..+.|..||.|+++.
T Consensus 181 ~a~t-~e~vas~rits~~~---------------IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 181 DAET-LECVASFRITSVQA---------------IKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred ecch-heeeeeeeechhee---------------eeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 9987 77777776544 22 26789999999999999999999999873
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=143.70 Aligned_cols=258 Identities=19% Similarity=0.239 Sum_probs=174.9
Q ss_pred cccceEEEEEcc-CCCEEEEEecC-------CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCC
Q 010801 31 DVDIVSAIEFDK-TGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHE 101 (501)
Q Consensus 31 h~~~v~~v~~s~-~g~~latg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 101 (501)
|.+.|+.++-+| +.+.|+|+..+ -.+.||.+...... +.....+.+..+. .+-
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------------S~~~tlE~v~~Ldteav 123 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------------SNSSTLECVASLDTEAV 123 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------------------cccchhhHhhcCCHHHh
Confidence 678999999999 45666665442 24678987754220 0000111111121 122
Q ss_pred cchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 102 ~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
+.|.||.|. |++..+++-. |..|.+|+++.+..+.. .....
T Consensus 124 ------------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~va-ev~ss----------------------- 164 (370)
T KOG1007|consen 124 ------------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVA-EVLSS----------------------- 164 (370)
T ss_pred ------------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchhe-eeccc-----------------------
Confidence 689999998 6788887776 78899999987653210 00000
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEEcCCeEEEEECCCCCeeeeeeecC
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
...++....++-+|+| +|+.+++..|+++..||+++..+...+
T Consensus 165 -------------------------------~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 165 -------------------------------ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI---- 209 (370)
T ss_pred -------------------------------ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch----
Confidence 0034566778889988 788888889999999999966655543
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
-..|...|+.+.|+|+...+|++|+.||.|++||.|..+.. +.+ +.+|..++.++.|+|.-
T Consensus 210 ---~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p-----v~e-----------l~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 210 ---EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP-----VQE-----------LPGHSHWVWAVRFNPEH 270 (370)
T ss_pred ---hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-----ccc-----------cCCCceEEEEEEecCcc
Confidence 46788999999999998568999999999999999875432 111 35688999999999964
Q ss_pred -CEEEEE-cCCcEEEEEeeCCCC----------------------------ceeEeeccccccccccccCCCCCcceeeE
Q 010801 340 -QHLLSR-DYMNLKLWDIRMDST----------------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (501)
Q Consensus 340 -~~l~~~-~~~~i~lwd~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (501)
++|++| +|..|.+|....-.. .+.++..|+ +++ ++
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE------------DSV---Y~ 335 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE------------DSV---YA 335 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc------------cce---EE
Confidence 455565 578999997543110 111222222 233 79
Q ss_pred EEEcCCCcE-EEEEeCCCeEEEEecC
Q 010801 390 CSVSGDGLH-FATGSYSNLLRIFSHG 414 (501)
Q Consensus 390 ~~~s~~~~~-l~s~~~dg~i~iwd~~ 414 (501)
++||.-..+ +|+-++||++.|=.+.
T Consensus 336 ~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 336 LAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EeeccCCCeeEEEeccCceEEeecCC
Confidence 999986655 5678999999987665
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-20 Score=172.26 Aligned_cols=260 Identities=16% Similarity=0.193 Sum_probs=191.0
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.+.|..+|+|+.|...|.++++|+.|..++||..+++.++ ...+||.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l---------------------------As~rGhs------ 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL---------------------------ASCRGHS------ 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh---------------------------ccCCCCc------
Confidence 4569999999999999999999999999999998887664 7899999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|+.++.+ .+..++++++.|..|++|.+.++..+.++
T Consensus 233 ------~ditdlavs--~~n~~iaaaS~D~vIrvWrl~~~~pvsvL---------------------------------- 270 (1113)
T KOG0644|consen 233 ------GDITDLAVS--SNNTMIAAASNDKVIRVWRLPDGAPVSVL---------------------------------- 270 (1113)
T ss_pred ------cccchhccc--hhhhhhhhcccCceEEEEecCCCchHHHH----------------------------------
Confidence 889999997 67788999999999999999988755443
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|++.|++++|+|-. .++.||++++||.+ -... ++...+..+. ..
T Consensus 271 ---------------------------rghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~--~y~prp~~~~-~~ 316 (1113)
T KOG0644|consen 271 ---------------------------RGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPR--IYVPRPLKFT-EK 316 (1113)
T ss_pred ---------------------------hccccceeeeccCccc---cCCCCCceEecccc-cccc--ccCCCCCCcc-cc
Confidence 7999999999999965 33499999999988 1111 1111121222 22
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEE-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR- 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~- 345 (501)
.-+.++.|...+ .-+++++.|+.-..|.+..-. + +...+.-+..+.|- .+.+++
T Consensus 317 ~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~--------~---------------~~~~lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 317 DLVDSILFENNG-DRFLTGSRDGEARNHEFEQLA--------W---------------RSNLLIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred cceeeeeccccc-cccccccCCcccccchhhHhh--------h---------------hccceEEEeccccccccceeee
Confidence 456677788887 889999999988887664321 1 01122222233222 344444
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
.+-.+.+|++.+ +...+.+.+|...+ ..+.++|- .+...+++.||...|||+-.|..+.....
T Consensus 373 ~~~~~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~ 436 (1113)
T KOG0644|consen 373 NDHRLCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI 436 (1113)
T ss_pred eeeEeeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence 457899999986 88888888888876 57899995 45556899999999999998866655554
Q ss_pred cccCcccceeecc
Q 010801 425 AGKNENRKPILQA 437 (501)
Q Consensus 425 ~~~~~v~~~~~~~ 437 (501)
+| ..+..-.|++
T Consensus 437 gh-~kl~d~kFSq 448 (1113)
T KOG0644|consen 437 GH-GKLVDGKFSQ 448 (1113)
T ss_pred cc-ceeeccccCC
Confidence 43 3333445554
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=148.67 Aligned_cols=218 Identities=13% Similarity=0.138 Sum_probs=162.3
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+|+++|..++|+| +...||+|++|.+|.||++..+... .+-.++...+.||.
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~------- 131 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ------- 131 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc-------
Confidence 5999999999999 6678999999999999998865442 23345778899999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.-|+|+| .-.+.|++++.|.+|.+|++.+++....
T Consensus 132 -----rrVg~V~wHP-tA~NVLlsag~Dn~v~iWnv~tgeali~------------------------------------ 169 (472)
T KOG0303|consen 132 -----RRVGLVQWHP-TAPNVLLSAGSDNTVSIWNVGTGEALIT------------------------------------ 169 (472)
T ss_pred -----eeEEEEeecc-cchhhHhhccCCceEEEEeccCCceeee------------------------------------
Confidence 8999999997 3457899999999999999999874432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..|...|++++|+.||.+|++. .|..|+|||.+ .+..+.. -.+|.
T Consensus 170 --------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e-------~~~he 215 (472)
T KOG0303|consen 170 --------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSE-------GVAHE 215 (472)
T ss_pred --------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeee-------ccccc
Confidence 2489999999999999999998 99999999999 4444432 23454
Q ss_pred c-ceEEEEEecCCCcEEEEEeC---CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 268 E-VITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 268 ~-~v~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
+ .-..+.|-.++ .++-+|.. +..+-+||..+-+... ....++. .+.|.---|.||...+.
T Consensus 216 G~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDt--------------SnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 216 GAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDT--------------SNGVLLPFYDPDTSIVY 279 (472)
T ss_pred CCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc-eeEEecc--------------CCceEEeeecCCCCEEE
Confidence 3 34556688888 75555533 7889999987643321 0122222 35677777888888776
Q ss_pred E-E-cCCcEEEEEeeCCCCceeEee
Q 010801 344 S-R-DYMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 344 ~-~-~~~~i~lwd~~~~~~~~~~~~ 366 (501)
. | +|+.||-|.+..+...+..+.
T Consensus 280 l~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred EEecCCcceEEEEecCCCceeEEec
Confidence 4 4 579999999975333344443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-16 Score=152.54 Aligned_cols=325 Identities=21% Similarity=0.348 Sum_probs=223.4
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...|...+.++.|.+.+..++.++.|+.+.+|+...+.. ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~----- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD----- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence 356899999999999999999999999999999886631 2244444330
Q ss_pred cccccccceeEEEEeecCCCC-EEEEeeC-CCeEEEEeccc-cceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~-~l~s~s~-d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..+..+.+. .+++. .++..+. |+.+++|+... .......
T Consensus 110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------------------------- 151 (466)
T COG2319 110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL------------------------------- 151 (466)
T ss_pred ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEE-------------------------------
Confidence 256777774 46776 4555444 99999999987 3322211
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-CCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
..|...|..++|+|++..++++ . ++.+++|++.. ......
T Consensus 152 ------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------- 193 (466)
T COG2319 152 ------------------------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLST------- 193 (466)
T ss_pred ------------------------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEe-------
Confidence 5888899999999999988887 5 99999999994 333332
Q ss_pred CCCcccceEEEEEecCCCc-EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 263 MDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+.+|...|.+++|+|++ . .+++++.|+.|++||...+..... .+ .+|.... ...|+|++.+
T Consensus 194 ~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---~~-------------~~~~~~~-~~~~~~~~~~ 255 (466)
T COG2319 194 LAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---TL-------------SGHSDSV-VSSFSPDGSL 255 (466)
T ss_pred eccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---ec-------------CCCCcce-eEeECCCCCE
Confidence 55689999999999998 6 555558999999998875433210 12 2234443 3389999988
Q ss_pred EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce
Q 010801 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (501)
+++++ ++.+++|++......+..+.+|...+ .++.|.|++..+++++.|+.+.+|+..+.....
T Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred EEEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 87664 59999999986333244444454433 678999988888889999999999888774442
Q ss_pred EEE-ecccCcccceeeccCCccccCccceeeee-cccce-eeccccCCccc-ccccCCCeEEEEEccCCCEEEE-e-eCC
Q 010801 421 ITV-EAGKNENRKPILQAAPRARRSSLSNLTRG-LYRQA-HENSSSGHHEL-SYNLSSKLLHLAWHPTTNLIAC-A-NGN 494 (501)
Q Consensus 421 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~iw~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~-~-~~~ 494 (501)
... ..|...+..+.+ . .++.. ++.+ ..++. .+|........ .......+..+.+++ ...+.. + ...
T Consensus 321 ~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 321 SLTLKGHEGPVSSLSF-S-PDGSL-----LVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred EeeecccCCceEEEEE-C-CCCCE-----EEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCC
Confidence 222 477777888888 5 23222 3444 56666 66855543311 112222288999999 633333 2 355
Q ss_pred eEEEEe
Q 010801 495 SLFFHY 500 (501)
Q Consensus 495 ~~~i~~ 500 (501)
.+.+|.
T Consensus 393 ~~~~~~ 398 (466)
T COG2319 393 TVRLWD 398 (466)
T ss_pred ceEEEe
Confidence 677775
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=140.03 Aligned_cols=300 Identities=13% Similarity=0.144 Sum_probs=190.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~ 108 (501)
.|.+.|+++.|..+++ |.+|..-|.|.+|++.+.... ..+++ |.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------~~~r~~g~------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------PLIRLFGR------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc---------------------------hhhhhhcc-------
Confidence 5788999999998776 888999999999999976542 34553 34
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCc-ccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP-FVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|+.+.-. |+ ..+.+-+.|+.+.+|++..+..+.+....... .+|-++-.............++..
T Consensus 57 -----~~it~lq~~--p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg---- 124 (323)
T KOG0322|consen 57 -----LFITNLQSI--PN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG---- 124 (323)
T ss_pred -----ceeeceeec--CC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcc----
Confidence 668887765 43 67889999999999999886655433211100 000000000000000000000000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEec-CCCC--EEEEE-cCCeEEEEECCCCCeeeeeeecCC--C
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP--S 261 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~ 261 (501)
.....+-|.....+.+....-..+..+.+.+..+. .++. ++++| .+|.+.+||+..+...+..-...+ .
T Consensus 125 -----sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~ 199 (323)
T KOG0322|consen 125 -----SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES 199 (323)
T ss_pred -----cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence 00111111111100000000013445667776652 2343 34567 999999999996543332110000 1
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc--ccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA--LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
....|..+|.++.+.+.- ..=++|+.+..+..|++.... +.......++ ...+..+..-||+
T Consensus 200 ~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk---------------npGv~gvrIRpD~ 263 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLK---------------NPGVSGVRIRPDG 263 (323)
T ss_pred chhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEec---------------CCCccceEEccCC
Confidence 245688999999999875 666778888889999886542 2111111222 2468999999999
Q ss_pred CEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 340 ~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+.+|+++ |+.||||..++ .+++..++.|...+ .+++|+|+..++|+++.|++|.+|++
T Consensus 264 KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence 9999875 79999999997 99999999999766 79999999999999999999999986
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=156.55 Aligned_cols=252 Identities=13% Similarity=0.164 Sum_probs=182.9
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.+...++||+ +.|.+|... +.|.+|++|+.||+|+||.+.+++++....+
T Consensus 391 ~~~lvyrGHt------------g~Vr~iSvd--p~G~wlasGsdDGtvriWEi~TgRcvr~~~~---------------- 440 (733)
T KOG0650|consen 391 RCALVYRGHT------------GLVRSISVD--PSGEWLASGSDDGTVRIWEIATGRCVRTVQF---------------- 440 (733)
T ss_pred eeeeeEeccC------------CeEEEEEec--CCcceeeecCCCCcEEEEEeecceEEEEEee----------------
Confidence 3456789999 999999996 7899999999999999999999987765422
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC--EEEEEcCCeEEEEECCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSADDLRINLWNLEIS 249 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~d~~i~iwd~~~~ 249 (501)
.+.|.|++|+|.+. .|+++.+..+.|-+..-+
T Consensus 441 ----------------------------------------------d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 441 ----------------------------------------------DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred ----------------------------------------------cceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 23566666666443 333332222333332211
Q ss_pred Cee--------ee-------------eeecC---C-----CCCCCcccceEEEEEecCCCcEEEEEeCC---CeEEEEEc
Q 010801 250 DQC--------FN-------------IVDMK---P-----SNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDM 297 (501)
Q Consensus 250 ~~~--------~~-------------~~~~~---~-----~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~~wd~ 297 (501)
.+. +. ++.-. . ...-.|...|..+.|+..| .+|++...+ ..|.|+++
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEec
Confidence 000 00 00000 0 0012467889999999999 999987664 56888888
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
..+... .-| ..-.+.+.++.|+|...+|++++...|++||+.. ...+..+......+
T Consensus 554 SK~~sQ----~PF-------------~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi----- 610 (733)
T KOG0650|consen 554 SKRKSQ----SPF-------------RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI----- 610 (733)
T ss_pred cccccc----Cch-------------hhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee-----
Confidence 765432 111 1124679999999999999999989999999975 66666655444444
Q ss_pred cCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce
Q 010801 378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 378 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
..++.+|.|.-|+.|+.|+.+..+|++-.....+++.-|...++.+++.+. ++.+++|+.|+.
T Consensus 611 ----------S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-------yPLfas~sdDgt 673 (733)
T KOG0650|consen 611 ----------SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-------YPLFASGSDDGT 673 (733)
T ss_pred ----------eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-------cceeeeecCCCc
Confidence 689999999999999999999999999887888999999999999999984 445999999999
Q ss_pred -eec
Q 010801 458 -HEN 460 (501)
Q Consensus 458 -~iw 460 (501)
.++
T Consensus 674 v~Vf 677 (733)
T KOG0650|consen 674 VIVF 677 (733)
T ss_pred EEEE
Confidence 776
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-17 Score=158.88 Aligned_cols=293 Identities=16% Similarity=0.216 Sum_probs=188.0
Q ss_pred ccccchhhhhhhccCCCCCCccccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccC
Q 010801 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (501)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (501)
.+++++|+....+. ....+|...|..++.++.. .++++|+.||+|+||+...-... +
T Consensus 1028 ~~p~~gW~p~G~lV----AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------~----- 1085 (1431)
T KOG1240|consen 1028 GSPPPGWNPRGILV----AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------G----- 1085 (1431)
T ss_pred CCCCCCCCccceEe----ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------c-----
Confidence 46778899987655 3456789999999998865 99999999999999998743321 0
Q ss_pred CCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccc
Q 010801 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (501)
Q Consensus 87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 166 (501)
..++...++.--. ..+.++..+ ++++.+|.++.||.|++.+++.....+..
T Consensus 1086 --~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~------------- 1136 (1431)
T KOG1240|consen 1086 --GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRV------------- 1136 (1431)
T ss_pred --ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccce-------------
Confidence 1222223332222 678899888 78899999999999999998763211111
Q ss_pred cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEee-cCCcccceEEEEecC-CCC-EEEEE-cCCeEE
Q 010801 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNS-DCE-TFVSA-DDLRIN 242 (501)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~-~~~-~l~~~-~d~~i~ 242 (501)
..+.+.. ......-|..-+|.. .+. .++.+ ..+.|.
T Consensus 1137 ----------------------------------------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1137 ----------------------------------------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred ----------------------------------------eeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 0011100 011222233334422 233 66677 899999
Q ss_pred EEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 243 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.||+++....... +.....+.|++++.+|.+ +.+++|+..|.+.+||+|-+... ..|..
T Consensus 1177 ~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i----~sw~~---------- 1235 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI----LSWEH---------- 1235 (1431)
T ss_pred EecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee----ecccC----------
Confidence 9999954433321 234456789999999998 99999999999999999987544 33332
Q ss_pred eeecccceeEEEEeeC---CCEEEEE-c-C-CcEEEEEeeCCCCceeEeeccccccccccccCCCC-----CcceeeEEE
Q 010801 323 FTEIIASISDIKFAND---GQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND-----SIFDKFECS 391 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~---~~~l~~~-~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 391 (501)
.+..+++.+..+|- ....+++ . . +.|.+|++.+ +.....+..... .+.+......+ ........+
T Consensus 1236 --P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~-~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1236 --PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDG-APILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred --cccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCC-CcchhhhcccccCCCCCcccceeee
Confidence 12357777777763 3455544 3 3 8999999986 555555544311 11111111111 111112344
Q ss_pred EcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 392 VSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 392 ~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+...+.++.+|+.|..|+.||....
T Consensus 1312 ~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCCceeeecCCccceeeccCCCc
Confidence 5555678999999999999998765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-18 Score=151.63 Aligned_cols=271 Identities=14% Similarity=0.208 Sum_probs=187.3
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~ 124 (501)
..++.++.||.+.|.+-... +.....+|. +.|.+-+|+
T Consensus 76 d~~~i~s~DGkf~il~k~~r----------------------------VE~sv~AH~------------~A~~~gRW~-- 113 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR----------------------------VERSISAHA------------AAISSGRWS-- 113 (737)
T ss_pred ceEEEEcCCceEEEecccch----------------------------hhhhhhhhh------------hhhhhcccC--
Confidence 45777788999888874322 335678898 999999998
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
++|.-|++++.||.|++|.-.+ .+..+
T Consensus 114 ~dGtgLlt~GEDG~iKiWSrsG-MLRSt---------------------------------------------------- 140 (737)
T KOG1524|consen 114 PDGAGLLTAGEDGVIKIWSRSG-MLRST---------------------------------------------------- 140 (737)
T ss_pred CCCceeeeecCCceEEEEeccc-hHHHH----------------------------------------------------
Confidence 8999999999999999998543 21111
Q ss_pred eeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
+......|.|++|.|+.+.++.+..+.+.|=-+......++ ...|.+-|.++.|++.. ++++
T Consensus 141 ---------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL~~~W~~~s-~lI~ 202 (737)
T KOG1524|consen 141 ---------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVLSLSWSTQS-NIIA 202 (737)
T ss_pred ---------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEEEeecCccc-ccee
Confidence 13446789999999999988888777777766664444443 67899999999999998 9999
Q ss_pred EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeE
Q 010801 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 285 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~ 364 (501)
+|++|-..++||-.... .|.. ..|..+|++++|+|+ +.++.++.+++|+=..+
T Consensus 203 sgGED~kfKvWD~~G~~-------Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~-------- 255 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQGAN-------LFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFSSPR-------- 255 (737)
T ss_pred ecCCceeEEeecccCcc-------cccC-----------Chhccceeeeeeccc-cceeeeeeeeeeecCCC--------
Confidence 99999999999987653 2332 235679999999999 77777776776621111
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 444 (501)
.+. + ..++||+||..+++|...|.+.+=-+-..+.....++....+-..+
T Consensus 256 ----~GS------------i---fnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I----------- 305 (737)
T KOG1524|consen 256 ----VGS------------I---FNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSI----------- 305 (737)
T ss_pred ----ccc------------e---EEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceE-----------
Confidence 111 1 6899999999999999999886644433322211111111110011
Q ss_pred ccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 445 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 445 ~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.+-+........+++.+.|...+ -.-.+|++++...+|+|+
T Consensus 306 -------------~vrdV~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys 346 (737)
T KOG1524|consen 306 -------------TVRDVATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYS 346 (737)
T ss_pred -------------EeehhhhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEe
Confidence 11111122334556666665555 445678888888888886
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=157.79 Aligned_cols=262 Identities=16% Similarity=0.220 Sum_probs=178.1
Q ss_pred EccCCCEEEE--EecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 40 FDKTGDYLAV--GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 40 ~s~~g~~lat--g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
|..+..++|+ ++..|.|-||++...-. .|+...-..+++ ..|+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGr---------------------LPDgv~p~l~Ng--------------t~vt 631 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGR---------------------LPDGVMPGLFNG--------------TLVT 631 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCC---------------------CCcccccccccC--------------ceee
Confidence 4445566665 35578999999874322 234433344444 4599
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
++.|.| -|..+|++++.||.|++|.+..+......
T Consensus 632 Dl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~-------------------------------------------- 666 (1012)
T KOG1445|consen 632 DLHWDP-FDDERLAVATDDGQINLWRLTANGLPENE-------------------------------------------- 666 (1012)
T ss_pred ecccCC-CChHHeeecccCceEEEEEeccCCCCccc--------------------------------------------
Confidence 999987 47789999999999999999865432211
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 275 (501)
..+...+ ..|...|+++.|+|- ...|+++ .|-+|++||+....... .+.+|++.|..++|
T Consensus 667 ---------~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~--------~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 667 ---------MTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS--------RLVGHTDQIFGIAW 728 (1012)
T ss_pred ---------CCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh--------eeccCcCceeEEEE
Confidence 1122223 789999999999994 4567777 99999999999554433 37899999999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-----CCcE
Q 010801 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----YMNL 350 (501)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-----~~~i 350 (501)
+|+| +.+++.+.||+|++|..+.++. .+.++ +..- ...-..+.|.-||+++++.+ ..+|
T Consensus 729 SpdG-r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg-~gpv---------gtRgARi~wacdgr~viv~Gfdk~SeRQv 792 (1012)
T KOG1445|consen 729 SPDG-RRIATVCKDGTLRVYEPRSREQ-----PVYEG-KGPV---------GTRGARILWACDGRIVIVVGFDKSSERQV 792 (1012)
T ss_pred CCCC-cceeeeecCceEEEeCCCCCCC-----ccccC-CCCc---------cCcceeEEEEecCcEEEEecccccchhhh
Confidence 9999 9999999999999999988754 23333 1100 12345678888999887542 2789
Q ss_pred EEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 351 KLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 351 ~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
.+||.++- ..++.+..-..... . .--.+.+|. -++++|-.|..|++|.+-..+.....+..|..
T Consensus 793 ~~Y~Aq~l~~~pl~t~~lDvaps-~-------------LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~s 858 (1012)
T KOG1445|consen 793 QMYDAQTLDLRPLYTQVLDVAPS-P-------------LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMS 858 (1012)
T ss_pred hhhhhhhccCCcceeeeecccCc-c-------------ccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccC
Confidence 99998752 23443332111111 0 112345554 45678889999999998765554445544443
Q ss_pred c
Q 010801 429 E 429 (501)
Q Consensus 429 ~ 429 (501)
+
T Consensus 859 p 859 (1012)
T KOG1445|consen 859 P 859 (1012)
T ss_pred C
Confidence 3
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-18 Score=148.37 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=179.1
Q ss_pred CCcccceEEEEecCCCC--EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCe
Q 010801 215 HAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 291 (501)
.-+..+|++++|+|..+ ++++| ..|.|=+||+.+.++...-+ .-+..|..+|.++.|+|.....+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 46788999999999654 67778 89999999996222211100 0257799999999999998789999999999
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeecccc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
|++-|+..+... .++.. . .-...+..+.|+.+..-++.+++ |...+||+++++.....+..|..
T Consensus 259 iR~~D~~~~i~e----~v~s~-~----------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 259 IRLQDFEGNISE----EVLSL-D----------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred eeeeeecchhhH----HHhhc-C----------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 999999876322 11111 0 01346788888888877777766 99999999997777777777877
Q ss_pred ccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcc---eEEEecccCcccceeeccCCccccCcc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSL 446 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~ 446 (501)
.+ ++++++|- ..+|||+|.|++.+|||+...... ....-.|...|.+..|+|. .|.
T Consensus 324 KI---------------~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-~gt---- 383 (498)
T KOG4328|consen 324 KI---------------TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-GGT---- 383 (498)
T ss_pred cc---------------ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-CCc----
Confidence 55 78999996 457899999999999999764322 2456689999999999995 333
Q ss_pred ceeeeecccce-eecccc-----CCcccccccC----C--CeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 447 SNLTRGLYRQA-HENSSS-----GHHELSYNLS----S--KLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 447 ~~l~~~~~~~~-~iw~~~-----~~~~~~~~~~----~--~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
|++.+.|.. ++|+.. ........|. . ....-+|.|+.+++++|. .+.|-||+
T Consensus 384 --l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 384 --LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred --eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 688888888 999653 1111111221 2 223568999999999997 44466654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-17 Score=142.39 Aligned_cols=268 Identities=16% Similarity=0.265 Sum_probs=175.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
-.|...|+++.|+|+|+.||+|+.+|.|.+|....-... ..+. + .....+.+...+.+.+|.
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~--~~d~--e-------~~~~ke~w~v~k~lr~h~------- 123 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF--DADT--E-------ADLNKEKWVVKKVLRGHR------- 123 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc--cccc--h-------hhhCccceEEEEEecccc-------
Confidence 369999999999999999999999999999986631110 0000 0 112244678888999999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|..++|+ +++.++++++.|..+++||+..|+.....
T Consensus 124 -----~diydL~Ws--~d~~~l~s~s~dns~~l~Dv~~G~l~~~~----------------------------------- 161 (434)
T KOG1009|consen 124 -----DDIYDLAWS--PDSNFLVSGSVDNSVRLWDVHAGQLLAIL----------------------------------- 161 (434)
T ss_pred -----cchhhhhcc--CCCceeeeeeccceEEEEEeccceeEeec-----------------------------------
Confidence 889999998 89999999999999999999999866653
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeee--cCCCCC--
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNM-- 263 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~-- 263 (501)
..|...+..++|.|.++++++= .|...+.+.+...+ ....+. ..+...
T Consensus 162 --------------------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~-~~~~~~~~~m~~~~~~ 214 (434)
T KOG1009|consen 162 --------------------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ-VIKRHGLDIMPAKAFN 214 (434)
T ss_pred --------------------------cccccccceeecchhhhhhhhhccCcccceeeeeeee-eeeeeeeeEeeecccC
Confidence 6788888888898888888874 66656665555222 111111 000000
Q ss_pred CC--------c----ccceEEEEEecCCCcEEEEEeC----CCeE-----EEEEccCCcccccccceeecccccCCCcce
Q 010801 264 DD--------L----TEVITSAEFHPIYCNLLAYSSS----RGFV-----RLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 264 ~~--------~----~~~v~~v~~~p~~~~~l~~~~~----dg~i-----~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.+ | ....+.++|+|+| .+|++.+. .+.+ ++|+-. ...+....+
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk---~l~rP~~~l------------ 278 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRK---DLKRPAARL------------ 278 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccc---cccCceeec------------
Confidence 00 1 1234677899999 88887543 2222 223221 111111111
Q ss_pred eeecccceeEEEEee------------------CCCEEEEEcCCcEEEEEeeCCCCceeEee-ccccccccccccCCCCC
Q 010801 323 FTEIIASISDIKFAN------------------DGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDS 383 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp------------------~~~~l~~~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 383 (501)
+....+...+.|+| -+-.+|.++.+.|++||.++ ..++.... .|-..+
T Consensus 279 -p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~-~~P~~~v~nihy~~i----------- 345 (434)
T KOG1009|consen 279 -PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT-LEPLAVVDNIHYSAI----------- 345 (434)
T ss_pred -CCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-ccceEEEeeeeeeee-----------
Confidence 11122334444433 23345566779999999986 55655543 344443
Q ss_pred cceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 384 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 384 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
++++|++||..|+..|.||...+-.++..
T Consensus 346 ----TDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 346 ----TDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ----cceeecCCCcEEEEeccCCceEEEEEcch
Confidence 79999999999999999998877776654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=150.26 Aligned_cols=205 Identities=15% Similarity=0.192 Sum_probs=156.9
Q ss_pred EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010801 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (501)
Q Consensus 232 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 310 (501)
.|+.+ .||.+.|.+-. ++.-+ .+..|.+.+.+-.|+|+| .-|+++++||.|++|.-... +. .+.
T Consensus 77 ~~~i~s~DGkf~il~k~--~rVE~-------sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGM-LR----Stl 141 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS--ARVER-------SISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGM-LR----STV 141 (737)
T ss_pred eEEEEcCCceEEEeccc--chhhh-------hhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccch-HH----HHH
Confidence 45555 89998887655 23222 368899999999999999 99999999999999985432 11 111
Q ss_pred ecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEE
Q 010801 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (501)
. ....+|.+++|.|+.+-++.+..+.+.+=.+.. ...+-.++.|++.+ .++
T Consensus 142 ~-------------Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGii---------------L~~ 192 (737)
T KOG1524|consen 142 V-------------QNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLV---------------LSL 192 (737)
T ss_pred h-------------hcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEE---------------EEe
Confidence 1 113689999999999888777668888888875 55666788999876 799
Q ss_pred EEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCccccc
Q 010801 391 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY 470 (501)
Q Consensus 391 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~ 470 (501)
.|++.+.++++|++|-..+|||-. | .....-.+|..++++++|.|. +. ++.++..-. ....
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~-G-~~Lf~S~~~ey~ITSva~npd---~~-----~~v~S~nt~---------R~~~ 253 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQ-G-ANLFTSAAEEYAITSVAFNPE---KD-----YLLWSYNTA---------RFSS 253 (737)
T ss_pred ecCccccceeecCCceeEEeeccc-C-cccccCChhccceeeeeeccc---cc-----eeeeeeeee---------eecC
Confidence 999999999999999999999976 3 344777899999999999995 22 455544322 1222
Q ss_pred ccCCCeEEEEEccCCCEEEEeeCCeEEEE
Q 010801 471 NLSSKLLHLAWHPTTNLIACANGNSLFFH 499 (501)
Q Consensus 471 ~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 499 (501)
...+.|..++|||||..+++|+..|..++
T Consensus 254 p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 254 PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CCccceEEEEEcCCCceeeccccCceEEE
Confidence 34568999999999999999998876554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=138.86 Aligned_cols=294 Identities=15% Similarity=0.197 Sum_probs=210.4
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
-.....|+ |||..|++-+.|..+++|++...-...-.. ....+..
T Consensus 51 f~kgckWS--PDGSciL~~sedn~l~~~nlP~dlys~~~~-----------------~~~~~~~---------------- 95 (406)
T KOG2919|consen 51 FLKGCKWS--PDGSCILSLSEDNCLNCWNLPFDLYSKKAD-----------------GPLNFSK---------------- 95 (406)
T ss_pred hhccceeC--CCCceEEeecccCeeeEEecChhhcccCCC-----------------Ccccccc----------------
Confidence 34567898 899999999999999999986432111000 0000000
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEec-------CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNN-------SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-------~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
...++ ......|...+|- |+..+++++ .+.-|++||.-+++ ....+ ....|
T Consensus 96 ------------~~~~r---~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~-lraSy-----~~ydh 154 (406)
T KOG2919|consen 96 ------------HLSYR---YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGK-LRASY-----RAYDH 154 (406)
T ss_pred ------------ceeEE---eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccc-cccch-----hhhhh
Confidence 00001 2334455655553 677788888 99999999988443 32221 12223
Q ss_pred cc---ceEEEEEecCCCcEEEEEeCCCeEEEEEc-cCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCE
Q 010801 267 TE---VITSAEFHPIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQH 341 (501)
Q Consensus 267 ~~---~v~~v~~~p~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~ 341 (501)
.. ...+++|+||| ..|+. +..+.|+++|+ |.++.+........+ -.+..+-|.+++|+|- .+.
T Consensus 155 ~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~----------k~gq~giisc~a~sP~~~~~ 222 (406)
T KOG2919|consen 155 QDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKG----------KFGQKGIISCFAFSPMDSKT 222 (406)
T ss_pred HHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhhcc----------cccccceeeeeeccCCCCcc
Confidence 32 34689999999 77765 56789999999 666544322122221 0123567899999995 458
Q ss_pred EEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCCcc
Q 010801 342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAG 419 (501)
Q Consensus 342 l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~ 419 (501)
++.|+. .++-||.-.. ..++..+-+|.+.+ +.++|.++|+.|.+|.. |-.|..||+...+..
T Consensus 223 ~a~gsY~q~~giy~~~~-~~pl~llggh~gGv---------------ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 223 LAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGV---------------THLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeecccceeeeEecCC-CCceeeecccCCCe---------------eeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 888886 7777887764 88999999999877 89999999999999876 789999999988778
Q ss_pred eEEEecccC-cccceeeccCCccccCccceeeeecccce-eecccc---CCcccccccCCCeEEEEEccCCCEEEEeeCC
Q 010801 420 GITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 420 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~---~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
+..+..|.. ....+.|-...++.+ |++|+.+|. .+|+.. ........++..++.++++|.=.++|++++.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~-----LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEI-----LASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCce-----eeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 888999988 666777877778888 999999999 999554 3445566788899999999999999999877
Q ss_pred eEE
Q 010801 495 SLF 497 (501)
Q Consensus 495 ~~~ 497 (501)
.+|
T Consensus 362 r~f 364 (406)
T KOG2919|consen 362 RIF 364 (406)
T ss_pred eee
Confidence 555
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=152.24 Aligned_cols=284 Identities=17% Similarity=0.208 Sum_probs=182.7
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCce
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (501)
.|.+++. ..+...+.-...|+|+.|+| +..+||.|+.+|.|.+||+..+...+ ..
T Consensus 226 vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------~s 281 (555)
T KOG1587|consen 226 VWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------PS 281 (555)
T ss_pred EEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------Cc
Confidence 4665554 12333344578999999999 66888999999999999998775420 01
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceee-eeccCCCcccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (501)
........|. .+++.+.|..++.+.-|++++.||.|..|+++.-.... .......
T Consensus 282 ~ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~------------ 337 (555)
T KOG1587|consen 282 GLSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK------------ 337 (555)
T ss_pred ccccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc------------
Confidence 1112233465 89999999865555679999999999999776433211 0000000
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~ 248 (501)
...... ..-...+++++|.+ +...++.| ++|.|.--+...
T Consensus 338 ------------------------------------~~~~~~--~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 338 ------------------------------------KHKGQQ--SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ------------------------------------cccccc--cccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 000000 12244678899976 45567888 999988744331
Q ss_pred CCeeeeeeecCC-CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc-CCcccccccceeecccccCCCcceeeec
Q 010801 249 SDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEI 326 (501)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (501)
........ .+. .....|.++|+++.++|-+.+.|++++ |.+++||... ..... ..+.. +
T Consensus 380 ~~~~~~~~-~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl----~~~~~-------------~ 440 (555)
T KOG1587|consen 380 YTPAPEVS-YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPL----LSLDS-------------S 440 (555)
T ss_pred Cccccccc-ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcc----hhhhh-------------c
Confidence 11111000 011 135668899999999999855566655 9999999876 32221 22222 2
Q ss_pred ccceeEEEEeeCCC-EEEEEc-CCcEEEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 327 IASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 327 ~~~i~~~~~sp~~~-~l~~~~-~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
...+.+++|||-.. .+++++ +|.|.+||+... ..++.+........ +.+.|+++|+.|++|.
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVGD 505 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccc---------------ceeecCCCCcEEEEec
Confidence 45699999999754 455565 599999999741 23444443332221 5789999999999999
Q ss_pred CCCeEEEEecCCC
Q 010801 404 YSNLLRIFSHGVG 416 (501)
Q Consensus 404 ~dg~i~iwd~~~~ 416 (501)
..|.+++|++...
T Consensus 506 ~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 506 ANGTTHILKLSES 518 (555)
T ss_pred CCCcEEEEEcCch
Confidence 9999999999743
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-15 Score=130.87 Aligned_cols=240 Identities=15% Similarity=0.197 Sum_probs=166.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...++.+.|+.+...|..|+.|| -++|+.+..+.. +..-.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-----------------------------~~~~~---------- 44 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-----------------------------FSKDT---------- 44 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-----------------------------hcccC----------
Confidence 34577888999999999999998 577876633210 11011
Q ss_pred cccceeEEEEeecCCCCEEEEeeCC--CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d--~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
....|--+-|+ ..+++..+.+ +.+++.+...+..++..
T Consensus 45 ~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~------------------------------------ 84 (391)
T KOG2110|consen 45 EGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKKKTTICEI------------------------------------ 84 (391)
T ss_pred CCeEEEEeecc----cceeEEEecCCCceEEEEEcccCceEEEE------------------------------------
Confidence 01334444554 3466666543 45788877766544432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.....|.++.++. +.|+++-...|+|||++ .-+.+.+++ ..+.+...
T Consensus 85 --------------------------~fpt~IL~VrmNr--~RLvV~Lee~IyIydI~-~MklLhTI~----t~~~n~~g 131 (391)
T KOG2110|consen 85 --------------------------FFPTSILAVRMNR--KRLVVCLEESIYIYDIK-DMKLLHTIE----TTPPNPKG 131 (391)
T ss_pred --------------------------ecCCceEEEEEcc--ceEEEEEcccEEEEecc-cceeehhhh----ccCCCccc
Confidence 2245788888865 46777733349999999 444555432 12345556
Q ss_pred eEEEEEecCCCcEEEEEeC--CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 270 ITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
+.++.+++.+ .+++.-+. .|.|.+||..+-+.. ..+ ..|.+.+.+++|+++|.+||++++
T Consensus 132 l~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v----~~I-------------~aH~~~lAalafs~~G~llATASe 193 (391)
T KOG2110|consen 132 LCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPV----NTI-------------NAHKGPLAALAFSPDGTLLATASE 193 (391)
T ss_pred eEeeccCCCC-ceEEecCCCCCceEEEEEcccceee----eEE-------------EecCCceeEEEECCCCCEEEEecc
Confidence 7777777776 67776543 699999999875432 333 347899999999999999999987
Q ss_pred -C-cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 348 -M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 348 -~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
| .|||+.+.. ++.+.+|+-....+. +.+++|+|++++|++.|..++|+||.++..
T Consensus 194 KGTVIRVf~v~~-G~kl~eFRRG~~~~~-------------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 194 KGTVIRVFSVPE-GQKLYEFRRGTYPVS-------------IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CceEEEEEEcCC-ccEeeeeeCCceeeE-------------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 4 589999985 888888875544431 279999999999999999999999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-15 Score=141.64 Aligned_cols=266 Identities=13% Similarity=0.119 Sum_probs=163.2
Q ss_pred CccccccceEEEEEccCCCEEEEEe-cCCcEEEEEecC-CcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
..+.+.+....++++|++++|++++ .++.|.+|++.. ++. ....... ..
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-------------------------~~~~~~~-~~--- 79 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-------------------------TFAAESP-LP--- 79 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------------------EEeeeec-CC---
Confidence 3344556788999999999987765 578899999862 221 1111111 11
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccc-cceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
+....++|+ |+++++++++ .++.|.+|++.+ +......
T Consensus 80 ---------~~p~~i~~~--~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~----------------------------- 119 (330)
T PRK11028 80 ---------GSPTHISTD--HQGRFLFSASYNANCVSVSPLDKDGIPVAPI----------------------------- 119 (330)
T ss_pred ---------CCceEEEEC--CCCCEEEEEEcCCCeEEEEEECCCCCCCCce-----------------------------
Confidence 345678887 8898888876 588999999864 2211100
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
.. ..+.....+++++|++++++++ .++.|.+||++..+...... ...
T Consensus 120 ----------------------------~~--~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~ 168 (330)
T PRK11028 120 ----------------------------QI--IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAE 168 (330)
T ss_pred ----------------------------ee--ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCc
Confidence 00 0112235568899999988665 78999999998533221100 000
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.... .......++|+|++ ++++++.. ++.|.+||+............+... +.. .. +......+.++|++
T Consensus 169 ~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~---p~~---~~-~~~~~~~i~~~pdg 239 (330)
T PRK11028 169 VTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM---PAD---FS-DTRWAADIHITPDG 239 (330)
T ss_pred eecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC---CCc---CC-CCccceeEEECCCC
Confidence 0111 12345789999999 88877766 8999999997421111111111110 000 00 11234568999999
Q ss_pred CEEEEEc--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecC
Q 010801 340 QHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 414 (501)
Q Consensus 340 ~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 414 (501)
++++++. ++.|.+|++...+..+ .+.++..... . ...+.++|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~---------~---p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTET---------Q---PRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEeccc---------c---CCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999874 3899999997533322 2222211000 0 057999999999998775 8999999885
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=151.67 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=179.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|+|++|+.||+.+|+|+.|..|.||...-.- ..--.|.
T Consensus 51 gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-----------------------------~LkYSH~-------- 93 (1081)
T KOG1538|consen 51 GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-----------------------------ILKYSHN-------- 93 (1081)
T ss_pred cccceEEEEEEccCCceeccCCCceeEEEecccccc-----------------------------eeeeccC--------
Confidence 599999999999999999999999999999854221 1123577
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.|+.|+ |-...|++++-. ..-+|........+
T Consensus 94 ----D~IQCMsFN--P~~h~LasCsLs-dFglWS~~qK~V~K-------------------------------------- 128 (1081)
T KOG1538|consen 94 ----DAIQCMSFN--PITHQLASCSLS-DFGLWSPEQKSVSK-------------------------------------- 128 (1081)
T ss_pred ----CeeeEeecC--chHHHhhhcchh-hccccChhhhhHHh--------------------------------------
Confidence 899999997 677889998753 36688776544222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
......+.+++|..||++++.| .+|+|.|-+-. +.+...+- .-.+.+.
T Consensus 129 -------------------------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~-----Rpgg~Ns 177 (1081)
T KOG1538|consen 129 -------------------------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE-----RPGGSNS 177 (1081)
T ss_pred -------------------------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe-----CCCCCCC
Confidence 2335678899999999999999 99999998765 44444331 2345778
Q ss_pred ceEEEEEecCCC----cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 269 VITSAEFHPIYC----NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 269 ~v~~v~~~p~~~----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+|++++|+|... ..+++.....++.+|.+...... +. +.+ .-...++.+.++|+|++.
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-k~-r~L----------------~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-KD-RAL----------------NFDPCCISYFTNGEYILL 239 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-cc-ccC----------------CCCchhheeccCCcEEEE
Confidence 999999998741 36888888888888887653211 00 111 224578899999999987
Q ss_pred E-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 345 R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 345 ~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
| +++.+++|--+ +..+.+....+..+ +.++..|++++++.|+.||+|..|++.
T Consensus 240 GGsdk~L~~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCCceEEEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhhH
Confidence 7 57999999754 66676666555554 899999999999999999999999873
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-14 Score=141.17 Aligned_cols=317 Identities=23% Similarity=0.338 Sum_probs=220.0
Q ss_pred cceEEEEE-ccCCC-EEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 33 DIVSAIEF-DKTGD-YLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 33 ~~v~~v~~-s~~g~-~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
..+..+.+ ++++. +++..+ .|+.+.+|+.... ......+..|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~-------- 155 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP--------------------------GKLIRTLEGHS-------- 155 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCC--------------------------CeEEEEEecCc--------
Confidence 36777777 88887 555444 4899999998851 12446788888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|..++|+ +++..+++++. |+.+++|++..+......
T Consensus 156 ----~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 194 (466)
T COG2319 156 ----ESVTSLAFS--PDGKLLASGSSLDGTIKLWDLRTGKPLSTL----------------------------------- 194 (466)
T ss_pred ----ccEEEEEEC--CCCCEEEecCCCCCceEEEEcCCCceEEee-----------------------------------
Confidence 889999998 77778888875 999999999875433322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|.+++|+|++. .++++ .|+.|++||.. .+..... .+..|
T Consensus 195 --------------------------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~------~~~~~ 241 (466)
T COG2319 195 --------------------------AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRS------TLSGH 241 (466)
T ss_pred --------------------------ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEee------ecCCC
Confidence 56889999999999998 66665 89999999887 4444331 15667
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.... ...|+|++ ..+++++.|+.+++||++..... .... .+|...+.++.|+|++..+++++
T Consensus 242 ~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 242 SDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTL-------------SGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred Ccce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEE-------------ecCCccEEEEEECCCCCEEEEee
Confidence 6664 33899998 89999999999999999876431 0111 23467899999999888888764
Q ss_pred -CCcEEEEEeeCCCCceeEee--ccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCCCCcceEE
Q 010801 347 -YMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 422 (501)
++.+.+||... ........ .|...+ ..+.|.+++..++.+ ..|+.+.+|++.... ....
T Consensus 304 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 366 (466)
T COG2319 304 SDGTVRLWDLET-GKLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKT 366 (466)
T ss_pred CCCcEEEEEcCC-CceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEE
Confidence 57899998875 44444443 444422 567774343455555 688999999998775 2122
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eeccccCCccccc-ccC-CCeEEEEEccCCCEEEEee-CCeEEE
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSY-NLS-SKLLHLAWHPTTNLIACAN-GNSLFF 498 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~-~~~-~~i~~~~~sp~~~~la~~~-~~~~~i 498 (501)
.... ..+..+.+.+ . ... ...+..++. .+|.......... ... ..+....+++++..++.++ ++.+.+
T Consensus 367 ~~~~-~~~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
T COG2319 367 LEGH-SNVLSVSFSP-D-GRV-----VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438 (466)
T ss_pred ecCC-ceEEEEEECC-C-CCE-----EEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEE
Confidence 2222 2266777766 4 433 334677777 8995543332222 112 6889999999999998865 555777
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|.
T Consensus 439 ~~ 440 (466)
T COG2319 439 WD 440 (466)
T ss_pred Ee
Confidence 75
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=153.87 Aligned_cols=213 Identities=14% Similarity=0.157 Sum_probs=144.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+..++|+ |+|+.|+.++.+ ..|++||+.+++......
T Consensus 204 ~~v~~p~wS--PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------------------------------ 245 (429)
T PRK01742 204 QPLMSPAWS--PDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS------------------------------------ 245 (429)
T ss_pred CccccceEc--CCCCEEEEEEecCCCcEEEEEeCCCCceEEEec------------------------------------
Confidence 779999998 899999988643 479999998775433210
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEE--ECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~ 266 (501)
+ .++ ...++|+|||+.|+.+ .++.+.|| |+. .+.... +..+
T Consensus 246 ----------------------~-~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~ 290 (429)
T PRK01742 246 ----------------------F-RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQ--------LTSG 290 (429)
T ss_pred ----------------------C-CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEe--------eccC
Confidence 0 232 2357999999988875 57766665 554 333322 3445
Q ss_pred ccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
...+..+.|+|+| +.|+.++ .+|...+|++....... ..+.. .. ....|+|||++|+..
T Consensus 291 ~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~--------------~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 291 AGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGGA---SLVGG--------------RG--YSAQISADGKTLVMI 350 (429)
T ss_pred CCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCe---EEecC--------------CC--CCccCCCCCCEEEEE
Confidence 5667889999999 7665544 57888999875432111 11111 22 357899999999877
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC--CCCcceEEE
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG--VGSAGGITV 423 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~ 423 (501)
....+.+||+.+ ++.......... ..+.|+|||++|+.++.++.+.+|.+. ++ .....+
T Consensus 351 ~~~~i~~~Dl~~-g~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l 411 (429)
T PRK01742 351 NGDNVVKQDLTS-GSTEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARL 411 (429)
T ss_pred cCCCEEEEECCC-CCeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEc
Confidence 655677799875 443322122111 358899999999999999988888763 34 345778
Q ss_pred ecccCcccceeeccC
Q 010801 424 EAGKNENRKPILQAA 438 (501)
Q Consensus 424 ~~~~~~v~~~~~~~~ 438 (501)
..|...+...+|+|.
T Consensus 412 ~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCCCCCCCcccCCC
Confidence 888888888888874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-15 Score=140.88 Aligned_cols=238 Identities=10% Similarity=-0.000 Sum_probs=147.5
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~w 295 (501)
.....++++|++++|+++ .++.|.+|+++..+.. .... .. ........++++|++ ++|++++. ++.|.+|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~----~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~ 107 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA----ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVS 107 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee----ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEE
Confidence 445678999999988765 6899999999733322 1110 01 122345789999999 77776654 8999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCcee------Eeec
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA------TFKI 367 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~------~~~~ 367 (501)
|+.+............. ......++++|+|+++++++ ++.|.+||+.+.+.... ....
T Consensus 108 ~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEG--------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred EECCCCCCCCceeeccC--------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 99743222111111111 13457788999999987654 49999999975332211 1111
Q ss_pred cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCC--CCc-ceEEEeccc------Ccccceeecc
Q 010801 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV--GSA-GGITVEAGK------NENRKPILQA 437 (501)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~--~~~-~~~~~~~~~------~~v~~~~~~~ 437 (501)
...+ ..+.|+|+|++++++.. ++.|.+|+++. +.. ....+.... .....+.++|
T Consensus 174 g~~p----------------~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 174 GAGP----------------RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CCCC----------------ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 1111 57999999999988876 89999999974 211 122332211 1122466777
Q ss_pred CCccccCccceeeeecc-cce-eecccc--CCccccccc---CCCeEEEEEccCCCEEEEee--CCeEEEEe
Q 010801 438 APRARRSSLSNLTRGLY-RQA-HENSSS--GHHELSYNL---SSKLLHLAWHPTTNLIACAN--GNSLFFHY 500 (501)
Q Consensus 438 ~~~~~~~~~~~l~~~~~-~~~-~iw~~~--~~~~~~~~~---~~~i~~~~~sp~~~~la~~~--~~~~~i~~ 500 (501)
++++ +..+.. ++. .+|+.+ +.......+ .....+++++|||++|++++ ++.+.+|.
T Consensus 238 --dg~~-----lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 238 --DGRH-----LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred --CCCE-----EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 6666 555543 455 888543 211122221 22456899999999999887 55688874
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=145.62 Aligned_cols=223 Identities=13% Similarity=0.145 Sum_probs=152.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++|+| -+..+++.|+.+|+|-+||+..+......
T Consensus 243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s---------------------------------------- 281 (555)
T KOG1587|consen 243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPS---------------------------------------- 281 (555)
T ss_pred CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCc----------------------------------------
Confidence 6799999996 45678888899999999999887632111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC----CCCc
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDL 266 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~ 266 (501)
++......|...++.+.|..+. .-++++ .||.|..|+++.-............. -...
T Consensus 282 ---------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~ 346 (555)
T KOG1587|consen 282 ---------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK 346 (555)
T ss_pred ---------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence 0001115788999999995543 447777 99999999887433322221111000 0112
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~ 345 (501)
...+++++|.+..++.|++|+.+|.|.--+....+.... ..++. ...+..|.++|..+.++|-+. +++++
T Consensus 347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~~~~-------~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VSYKG-------HSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--ccccc-------cccccccCcceEeeecCCCccceeeee
Confidence 346799999998888999999999988744333221110 11122 222345788999999999765 44556
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 416 (501)
.|.+++||.-.....++..+..+...+ ++++|||.. ..++++..||.|.|||+...
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 689999999873367777776666543 799999975 56778888999999999754
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=132.93 Aligned_cols=209 Identities=9% Similarity=0.160 Sum_probs=157.3
Q ss_pred cccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.++..++++..|+. +-++|.+.+-|-+..|||++++. .+.+.+.+-+|.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~------------------------~~~vkTQLIAHD------ 196 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV------------------------SGTVKTQLIAHD------ 196 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeecc------------------------ccceeeEEEecC------
Confidence 35688999999998 67899999999999999999873 233557788999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.+|+|.. ..-+.|++.+.||.+|+||++..+...+.-..
T Consensus 197 ------KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~------------------------------- 238 (364)
T KOG0290|consen 197 ------KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYED------------------------------- 238 (364)
T ss_pred ------cceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecC-------------------------------
Confidence 7799999982 34578999999999999999876533221000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.....+...++|++. .+++++ + +...|.|-|++.....+. ++.
T Consensus 239 ---------------------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva-------~L~ 284 (364)
T KOG0290|consen 239 ---------------------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA-------RLR 284 (364)
T ss_pred ---------------------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee-------hhh
Confidence 122456778899874 556666 4 788999999996665554 489
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcc--cccccceeecccccCCCcceeeecccceeEEEEee-CCCE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQH 341 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~ 341 (501)
+|.+.|++++|.|..+..|++++.|..+.+||+.+.-. ....+..+.. .+.|+.+.|+| .+.+
T Consensus 285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--------------~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--------------GGEVNQIQWSSSQPDW 350 (364)
T ss_pred cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--------------cceeeeeeecccCCCE
Confidence 99999999999999888999999999999999986422 1111112222 46799999996 5678
Q ss_pred EEEEcCCcEEEE
Q 010801 342 LLSRDYMNLKLW 353 (501)
Q Consensus 342 l~~~~~~~i~lw 353 (501)
|+.+..+++.+.
T Consensus 351 iai~~~kkleiL 362 (364)
T KOG0290|consen 351 IAICFGKKLEIL 362 (364)
T ss_pred EEEEecCeeeEE
Confidence 888766655543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=131.37 Aligned_cols=226 Identities=15% Similarity=0.232 Sum_probs=166.4
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+|+|.+|++|+..+|++.....|-||...+.+ .++...+++.|+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd---------- 55 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD---------- 55 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence 4789999999999999999999999999987664 266778899999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEec-cccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|+.|+|+ |..+.|++++.|+.-++|.. .+++.+...
T Consensus 56 --~~vtgvdWa--p~snrIvtcs~drnayVw~~~~~~~Wkptl------------------------------------- 94 (361)
T KOG1523|consen 56 --KIVTGVDWA--PKSNRIVTCSHDRNAYVWTQPSGGTWKPTL------------------------------------- 94 (361)
T ss_pred --cceeEEeec--CCCCceeEccCCCCccccccCCCCeeccce-------------------------------------
Confidence 999999998 78889999999999999998 555544332
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+ ..+...++++.|+|.++.|++| ....|.+|-++. +...-+ ....-..+...
T Consensus 95 ---------------------vL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdWWV---sKhikkPirSt 148 (361)
T KOG1523|consen 95 ---------------------VL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDWWV---SKHIKKPIRST 148 (361)
T ss_pred ---------------------eE-EEeccceeeEeecCcCceEEeccCccEEEEEEEec-ccceeh---hhhhCCccccc
Confidence 11 4667789999999999999999 888999998883 322210 00112446778
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcc-------eeeecccceeEEEEeeCCCEE
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS-------FFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~i~~~~~sp~~~~l 342 (501)
|.+++|+|++ -+|+.|+.|+..+++..--.....+. . +.+.+..- .+..-.+.+..+.|+|+|..|
T Consensus 149 v~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekp-----a-p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l 221 (361)
T KOG1523|consen 149 VTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKP-----A-PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL 221 (361)
T ss_pred eeeeeccCCc-ceecccccCcceeEEEEeeeccccCC-----C-CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence 9999999998 89999999999999975432211100 0 00111111 112335789999999999999
Q ss_pred EE-EcCCcEEEEEeeCCCCceeEe
Q 010801 343 LS-RDYMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 343 ~~-~~~~~i~lwd~~~~~~~~~~~ 365 (501)
+- +.|..+.+-|...+.+.+...
T Consensus 222 awv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred eEecCCCceEEeecCCCchhccch
Confidence 95 467999999886433334433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=143.64 Aligned_cols=241 Identities=20% Similarity=0.273 Sum_probs=159.6
Q ss_pred CCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 26 ~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
.+..+|++.|+|++|+.+|.+||+|+.|-++.|||.-..+. ....-.||.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--------------------------lhsI~TgHt---- 93 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--------------------------LHSISTGHT---- 93 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--------------------------eeeeecccc----
Confidence 34557999999999999999999999999999999774332 123346899
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|.+++|.|..++..+++|+.|..|+++|+...+....- .
T Consensus 94 --------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d---~---------------------------- 134 (758)
T KOG1310|consen 94 --------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD---H---------------------------- 134 (758)
T ss_pred --------cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc---c----------------------------
Confidence 9999999999888899999999999999999863311100 0
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecC--CC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMK--PS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~ 261 (501)
+ .....+.+ ..|...|..++-.|++ ..+.++ .||+|+-+|++....+-..-+.. ..
T Consensus 135 --------~-----------~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 135 --------G-----------MEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred --------C-----------ccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 0 00111111 6788999999999988 677777 99999999998432221100000 00
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccC----CCcceeeecc----------
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEII---------- 327 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~---------- 327 (501)
++...--...++..+|..+.+|++|+.|--.++||.+.............. .+| ..+.+-++|-
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGHLKNSQGNLDRY 272 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC--CCCcccchhheecCccccCcccccccc
Confidence 011111345789999998889999999999999996532111100011000 000 0011111221
Q ss_pred -cceeEEEEeeCCCEEEEE-cCCcEEEEEeeC
Q 010801 328 -ASISDIKFANDGQHLLSR-DYMNLKLWDIRM 357 (501)
Q Consensus 328 -~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~ 357 (501)
..++-++|+|+|.-|+.. +...|+++|+..
T Consensus 273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 235778899999877765 347899999875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=139.51 Aligned_cols=307 Identities=15% Similarity=0.228 Sum_probs=206.3
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|+-.++|.++||+++++|+|..||+|.+|.--..+. .-...+.++=|-
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------- 251 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------- 251 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc-------
Confidence 45777799999999999999999999999997433111 111335677787
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|+ ++|.+|++|+..+.+-+|.+.+++ .+
T Consensus 252 -----~~V~~L~fS--~~G~~LlSGG~E~VLv~Wq~~T~~-kq------------------------------------- 286 (792)
T KOG1963|consen 252 -----DEVNSLSFS--SDGAYLLSGGREGVLVLWQLETGK-KQ------------------------------------- 286 (792)
T ss_pred -----cccceeEEe--cCCceEeecccceEEEEEeecCCC-cc-------------------------------------
Confidence 789999998 899999999999999999999877 22
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC---CCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS---NMD 264 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~~ 264 (501)
|++.-.++|..+.++||+.+.+.. .|+.|.+-..........+-.+++. .-.
T Consensus 287 ------------------------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~ 342 (792)
T KOG1963|consen 287 ------------------------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT 342 (792)
T ss_pred ------------------------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccc
Confidence 225667899999999999999888 9999999876422221111111111 012
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
...+-.+.++++|.- +.++..+..|.|.+||+.+.+...+. ++... +...+. ..+...+++++.+-.|.++++
T Consensus 343 ~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~-~v~~~-n~~~~~----~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 343 RPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKL-QVCDE-NYSDGD----VNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred cccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeE-EEEee-cccCCc----ceeEEeeeeehhhccceEEEE
Confidence 234567888999965 78888899999999999887655321 22221 111111 023456888888888999998
Q ss_pred Ec---------C--CcEEEEEeeCCCCc---eeEe-eccccccccccccCCCCCcceeeEEE-EcCCCc-EEEEEeCCCe
Q 010801 345 RD---------Y--MNLKLWDIRMDSTP---VATF-KIHEHLRPKLCDLYNNDSIFDKFECS-VSGDGL-HFATGSYSNL 407 (501)
Q Consensus 345 ~~---------~--~~i~lwd~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~-~l~s~~~dg~ 407 (501)
.. + -.+++|......+. ...+ ..|.... ...+ .++... ..++++.||.
T Consensus 416 ~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~---------------vat~~~~~~rs~~~vta~~dg~ 480 (792)
T KOG1963|consen 416 LEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF---------------VATIFLNPTRSVRCVTASVDGD 480 (792)
T ss_pred eeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee---------------EEEEEecCcccceeEEeccCCe
Confidence 52 1 35788977532221 1111 2333322 2333 333333 7899999999
Q ss_pred EEEEecCCCCcc---------eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC
Q 010801 408 LRIFSHGVGSAG---------GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 408 i~iwd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
++||-+...+.. ...-.-|+.++...+|+. +|.. ...+.++. .+|+...
T Consensus 481 ~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~--dGsl------la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 481 FKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ--DGSL------LAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEEEecccccCcCccceEEeeeeccccCcccchhhcC--CCcE------EEEecCCEEEEecCCC
Confidence 999998432211 111113788999999988 6654 56666677 9995553
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=142.01 Aligned_cols=306 Identities=16% Similarity=0.190 Sum_probs=215.2
Q ss_pred CccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
..-.|.+.|+.|.|+..|..|++|+.|..|.+||+..+... ..-..||.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~----- 185 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHC----- 185 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--------------------------cccccccc-----
Confidence 34469999999999999999999999999999999977542 22345788
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccc-ceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|..-+|.|..+..-+++++.||.+++=.+... .+..+.
T Consensus 186 -------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~-------------------------------- 226 (559)
T KOG1334|consen 186 -------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK-------------------------------- 226 (559)
T ss_pred -------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecce--------------------------------
Confidence 7788889998888889999999999998765432 221111
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.+..|.+.|..++.-|+.. .|.++ .|+.+.-+|++......... . .
T Consensus 227 ---------------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-c----r 274 (559)
T KOG1334|consen 227 ---------------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-C----R 274 (559)
T ss_pred ---------------------------ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-e----e
Confidence 0157888999999988654 45566 99999999998443222211 1 1
Q ss_pred CCccc---ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc--cceeecccccCCCcceeeecccceeEEEEeeC
Q 010801 264 DDLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS--ARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 264 ~~~~~---~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~ 338 (501)
..+.. ....++.+|...+.+++++.|-.+++||.+.-...... +..+.. ..........|++++|+.+
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p-------~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP-------HHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC-------ccccccCcccceeEEecCC
Confidence 22222 56788999988679999999999999998764321100 011111 0111122457999999965
Q ss_pred C-CEEEEEcCCcEEEEEeeCC-C----------CceeE-eeccccccccccccCCCCCcceeeEEE-EcCCCcEEEEEeC
Q 010801 339 G-QHLLSRDYMNLKLWDIRMD-S----------TPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHFATGSY 404 (501)
Q Consensus 339 ~-~~l~~~~~~~i~lwd~~~~-~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l~s~~~ 404 (501)
+ .+|++-.|-.|+++.-... + ..+.. +++|.....+ ..+- |-|...|+++||.
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV-------------KgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV-------------KGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc-------------ceeeeccCccceEEecCc
Confidence 4 5666667788999954321 1 12223 6777765421 3443 6678899999999
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
-|.|.||+-.++ .+...+++...-|.|+.-.|- .+.||+.+-+.- +||..
T Consensus 415 CGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~-------~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 415 CGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPH-------LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cceEEEEecchh-HHHHHhhcccceEeccCCCCC-------CchhhccCCccceeeecC
Confidence 999999998887 555777888778888888774 233899999988 99944
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-16 Score=128.33 Aligned_cols=289 Identities=9% Similarity=0.053 Sum_probs=175.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|+++.|- ...+|.+|..-|.|++|++++.+-....... +...+.+....+.......+. +
T Consensus 15 ~~v~s~~fq---a~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~------------g~~~it~lq~~p~d~l~tqgR---d 76 (323)
T KOG0322|consen 15 SSVTSVLFQ---ANERLMSGLSVGIVKMWVLQTERDLPLIRLF------------GRLFITNLQSIPNDSLDTQGR---D 76 (323)
T ss_pred chheehhhc---cchhhhcccccceEEEEEeecCccchhhhhh------------ccceeeceeecCCcchhhcCC---C
Confidence 889999994 4567999999999999999987755443211 112223333333333333333 6
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecC-----CCC---EEEE--E-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DCE---TFVS--A-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~---~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
..+.+|++...... ..|.-.++++.|.+ .++ .++. + ....+.+-|... ...+.+ ....
T Consensus 77 ~~L~lw~ia~s~~i-------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~-~tqv~i---~dd~ 145 (323)
T KOG0322|consen 77 PLLILWTIAYSAFI-------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGD-TTQVQI---ADDS 145 (323)
T ss_pred ceEEEEEccCcceE-------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCc-cceeEc---cCch
Confidence 68889998863221 23333444454432 221 1222 1 111122223221 111111 1112
Q ss_pred CCCcccceEEEEEecC-CC-cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 263 MDDLTEVITSAEFHPI-YC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~-~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
-.+..+.+.+..+.-+ +. -+++.|.++|.+.+||+.++.... .. +....-......|..++.++.|.+.-.
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~------~~-~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII------QL-PQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee------cc-ccccccccchhhccCcceeeeechhhc
Confidence 2334456777765432 21 256777889999999999874332 22 222222223345788999999987544
Q ss_pred EEEEEc-CCcEEEEEeeCCCCcee---EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 341 HLLSRD-YMNLKLWDIRMDSTPVA---TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.=++|+ +..+..|++......++ ++...... +..+.+-||++.+|+++.|++||||+-++.
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG---------------v~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG---------------VSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred CCcCCCccccceeeeeccccCcccccceEEecCCC---------------ccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 444443 47888998864211111 11111111 157899999999999999999999999998
Q ss_pred CcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 417 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
..+ ..++-|...+.+++|+| +..+ +|.++.|.. .+|+
T Consensus 284 ~pL-AVLkyHsagvn~vAfsp--d~~l-----mAaaskD~rISLWk 321 (323)
T KOG0322|consen 284 NPL-AVLKYHSAGVNAVAFSP--DCEL-----MAAASKDARISLWK 321 (323)
T ss_pred Cch-hhhhhhhcceeEEEeCC--CCch-----hhhccCCceEEeee
Confidence 555 89999999999999999 4445 899999999 9994
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=142.37 Aligned_cols=268 Identities=16% Similarity=0.146 Sum_probs=181.8
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
.++..|. +.|..++|. +....|++++.|++|++|+++... ...
T Consensus 288 ~tl~s~~------------d~ir~l~~~--~sep~lit~sed~~lk~WnLqk~~--~s~--------------------- 330 (577)
T KOG0642|consen 288 FTLRSHD------------DCIRALAFH--PSEPVLITASEDGTLKLWNLQKAK--KSA--------------------- 330 (577)
T ss_pred eeeecch------------hhhhhhhcC--CCCCeEEEeccccchhhhhhcccC--Ccc---------------------
Confidence 3667777 889999997 566789999999999999994311 000
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 253 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 253 (501)
....+++.+| .+|.++|.|+++.++++.+++| -||+|+.|++.......
T Consensus 331 -----------------------------~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ 380 (577)
T KOG0642|consen 331 -----------------------------EKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD 380 (577)
T ss_pred -----------------------------ccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc
Confidence 0012344444 7999999999999999999999 99999999776333333
Q ss_pred eeeecC--CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 254 NIVDMK--PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 254 ~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
...+.. ...+.+|...|+.+++++.. ..|++++.||++++|+...... .+|.... . .+.-.
T Consensus 381 ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~----------e-~g~Pl 443 (577)
T KOG0642|consen 381 DSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGEPK----------E-HGYPL 443 (577)
T ss_pred cccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCCcc----------c-cCCcc
Confidence 222111 12478999999999999987 8899999999999999876543 1222200 0 12233
Q ss_pred EEEEeeCCCEEEEE--cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 332 DIKFANDGQHLLSR--DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 332 ~~~~sp~~~~l~~~--~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
.+.+-...-.+..+ ..+.--+++... ...+..+.......+ ..... +..+.++|.+.+.+++..|+.|+
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~-----~~~~~---in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGP-----RRYPQ---INKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcc-----cccCc---cceEEecCCCCeeEecccCCcee
Confidence 44443222111111 113333344433 222333322211110 00011 15788999999999999999999
Q ss_pred EEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 410 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
++|..++ .+.....+|...+.++++.| +|-+ |.+|+.|+. .+|+..
T Consensus 515 ~~dn~~~-~~l~s~~a~~~svtslai~~--ng~~-----l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 515 FFDNKTG-KILHSMVAHKDSVTSLAIDP--NGPY-----LMSGSHDGSVRLWKLD 561 (577)
T ss_pred ccccccc-ccchheeeccceecceeecC--CCce-----EEeecCCceeehhhcc
Confidence 9999998 45588899999999999999 6767 999999999 999554
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-16 Score=133.82 Aligned_cols=229 Identities=17% Similarity=0.191 Sum_probs=160.6
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
+.+.+.+|. +.|++|.|+ .++++|++|+.|..+++|+++.....++
T Consensus 48 ~qKD~~~H~------------GCiNAlqFS--~N~~~L~SGGDD~~~~~W~~de~~~~k~-------------------- 93 (609)
T KOG4227|consen 48 CQKDVREHT------------GCINALQFS--HNDRFLASGGDDMHGRVWNVDELMVRKT-------------------- 93 (609)
T ss_pred hhhhhhhhc------------cccceeeec--cCCeEEeecCCcceeeeechHHHHhhcC--------------------
Confidence 345577888 999999998 7899999999999999999876432221
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
.+++...-..|...|.|++|...+..+.+| .+++|.+-|++ .++
T Consensus 94 ----------------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-t~q 138 (609)
T KOG4227|consen 94 ----------------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-TKQ 138 (609)
T ss_pred ----------------------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc-cce
Confidence 112222214677899999999999999999 99999999999 444
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.+.+. .-....+.|+.+..+|.. +.|++.+.++.|.+||.+...... ..+-. . .......
T Consensus 139 si~V~-----~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-A----------N~~~~F~ 198 (609)
T KOG4227|consen 139 SIYVA-----NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-A----------NSGKNFY 198 (609)
T ss_pred eeeee-----cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-c----------CCCccce
Confidence 44431 112234589999999997 999999999999999998764221 11111 1 1134577
Q ss_pred EEEEeeCCC-EEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 332 DIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 332 ~~~~sp~~~-~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
.+-|+|... +|++.+. +-+.+||.+....++....+....... ..+. .++-|+|+|..+.+--....-.
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-----~~~~----M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE-----NTEW----MGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-----chhh----hheeeCCCCCeehhhhccCCCE
Confidence 888999754 5556655 889999998766666555443332110 0011 3688999999988776666666
Q ss_pred EEecCCCCcc
Q 010801 410 IFSHGVGSAG 419 (501)
Q Consensus 410 iwd~~~~~~~ 419 (501)
+||+.+.++.
T Consensus 270 ~~D~~S~R~~ 279 (609)
T KOG4227|consen 270 YFDFISQRCF 279 (609)
T ss_pred Eeeeecccce
Confidence 7888765443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=130.05 Aligned_cols=220 Identities=19% Similarity=0.278 Sum_probs=144.1
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 37 ~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
-++|||+|+|+|+.+. -++.|-|.++-+.. ..+.. - +.|
T Consensus 13 ~c~fSp~g~yiAs~~~-yrlviRd~~tlq~~---------------------------qlf~c-l------------dki 51 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-YRLVIRDSETLQLH---------------------------QLFLC-L------------DKI 51 (447)
T ss_pred ceeECCCCCeeeeeee-eEEEEeccchhhHH---------------------------HHHHH-H------------HHh
Confidence 5789999999999875 48888887765431 11111 1 558
Q ss_pred eEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 117 NRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
..|.|. .+..+++.+ ..|+.|.+|++...+....+
T Consensus 52 ~yieW~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckI------------------------------------------ 87 (447)
T KOG4497|consen 52 VYIEWK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKI------------------------------------------ 87 (447)
T ss_pred hheeee--ccceeeeeeeeccceEEEEEeecceeEEEe------------------------------------------
Confidence 889997 666666655 57889999999877644432
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
....+++.+++|+|||+.++ ++ .+-.|.+|.+.++. ... ++-....+..+
T Consensus 88 -------------------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~~--------~~~pK~~~kg~ 139 (447)
T KOG4497|consen 88 -------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-GYL--------LPHPKTNVKGY 139 (447)
T ss_pred -------------------ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-eEE--------ecccccCceeE
Confidence 45567889999999996655 46 89999999999443 332 23334456889
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC---CcE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNL 350 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~---~~i 350 (501)
+|+|+| ++.+.++.-.....+.+..-+.- ...+.+.. .+-..+.+.|+|||..||+=+. -.|
T Consensus 140 ~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W-~ll~~f~~-------------dT~DltgieWsPdg~~laVwd~~Leykv 204 (447)
T KOG4497|consen 140 AFHPDG-QFCAILSRRDCKDYVQISSCKAW-ILLKEFKL-------------DTIDLTGIEWSPDGNWLAVWDNVLEYKV 204 (447)
T ss_pred EECCCC-ceeeeeecccHHHHHHHHhhHHH-HHHHhcCC-------------CcccccCceECCCCcEEEEecchhhhee
Confidence 999999 88887765322211122111000 00011111 1345788999999988876431 223
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
+.|... .+. ..++|+|.+++|+.|+.|+.+||.+
T Consensus 205 ~aYe~~------------lG~----------------k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 205 YAYERG------------LGL----------------KFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eeeeec------------cce----------------eEEEeccccceEEeeccchhhhhhc
Confidence 322221 111 4799999999999999999998854
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=129.92 Aligned_cols=268 Identities=12% Similarity=0.092 Sum_probs=172.6
Q ss_pred CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceee
Q 010801 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (501)
Q Consensus 128 ~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~ 207 (501)
..++++.+.|.|++||..+++....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f------------------------------------------------------ 66 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF------------------------------------------------------ 66 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee------------------------------------------------------
Confidence 46888888999999999987654433
Q ss_pred eeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc-cceEEEEEecCCCcEE
Q 010801 208 RCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLL 283 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l 283 (501)
.++...++.+.|.. ....+.+| .||+|++||++..++..++ ....+. .+..+++.+-.+ +++
T Consensus 67 -------k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~------~~~~~~~~~f~~ld~nck~-~ii 132 (376)
T KOG1188|consen 67 -------KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI------SWTQQSGTPFICLDLNCKK-NII 132 (376)
T ss_pred -------cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe------eccCCCCCcceEeeccCcC-CeE
Confidence 45666666777754 45567777 9999999999966654432 134444 456777777666 788
Q ss_pred EEEeC----CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc-CCcEEEEEeeC
Q 010801 284 AYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNLKLWDIRM 357 (501)
Q Consensus 284 ~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~-~~~i~lwd~~~ 357 (501)
++|+. +-.|.+||+|..+... ..+. ..|...|+++.|+|. -+.|++|+ ||-|.|||+..
T Consensus 133 ~~GtE~~~s~A~v~lwDvR~~qq~l---~~~~------------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 133 ACGTELTRSDASVVLWDVRSEQQLL---RQLN------------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred EeccccccCceEEEEEEeccccchh---hhhh------------hhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 88765 6789999999875321 2222 237789999999995 46788886 79999999975
Q ss_pred CCC---ceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCcceEEEecccC-----
Q 010801 358 DST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKN----- 428 (501)
Q Consensus 358 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----- 428 (501)
+.. ++.++. +.. +| ..+.|..++ +.|.+-+..+...+|+++.+++....-+..-.
T Consensus 198 d~EeDaL~~viN-~~s------------SI---~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 198 DNEEDALLHVIN-HGS------------SI---HLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred CcchhhHHHhhc-ccc------------ee---eeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 321 122222 111 12 578998876 45888999999999999988654221111000
Q ss_pred ----ccccee-eccCCccccCccceeeeecc-cce-eecccc--------CCccccc-ccCCCeEEEEEccCCCEEEEee
Q 010801 429 ----ENRKPI-LQAAPRARRSSLSNLTRGLY-RQA-HENSSS--------GHHELSY-NLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 429 ----~v~~~~-~~~~~~~~~~~~~~l~~~~~-~~~-~iw~~~--------~~~~~~~-~~~~~i~~~~~sp~~~~la~~~ 492 (501)
--+-+- ..|. ++.. ++.++. -++ .++... .....+. +|..-|+++.|...+.++.+|+
T Consensus 262 ~~~~~dY~I~~~~~~-~~~~-----~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG 335 (376)
T KOG1188|consen 262 KEDNCDYVINEHSPG-DKDT-----CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG 335 (376)
T ss_pred hhhhhhheeecccCC-Ccce-----EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence 000000 1121 2222 333433 333 555111 2222233 3667889999999999999999
Q ss_pred CCe-EEEEe
Q 010801 493 GNS-LFFHY 500 (501)
Q Consensus 493 ~~~-~~i~~ 500 (501)
+|+ +.+|.
T Consensus 336 EDG~l~~Wk 344 (376)
T KOG1188|consen 336 EDGLLQAWK 344 (376)
T ss_pred CCceEEEEe
Confidence 777 77875
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-15 Score=125.87 Aligned_cols=288 Identities=13% Similarity=0.146 Sum_probs=165.7
Q ss_pred ccceEEEEEccCCCEEEEE-ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
-+.|.-+.|..|..++..+ ..|+.|.+|++...+ ....+....
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------------w~ckIdeg~--------- 91 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------------WYCKIDEGQ--------- 91 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------------eEEEeccCC---------
Confidence 3668889999988777654 678899999988442 334444444
Q ss_pred ccccceeEEEEeecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+++.+++|+ |+|+.++ +...|-.|.+|.+.+.+...+.- ...++....+.+++.+.+-..
T Consensus 92 ---agls~~~WS--PdgrhiL~tseF~lriTVWSL~t~~~~~~~~--------------pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 92 ---AGLSSISWS--PDGRHILLTSEFDLRITVWSLNTQKGYLLPH--------------PKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred ---CcceeeeEC--CCcceEeeeecceeEEEEEEeccceeEEecc--------------cccCceeEEECCCCceeeeee
Confidence 889999998 7886555 55689999999998866443321 112222333344444333222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.. ......++........++.+ .-.+-..+.+.|+|||..|++= -+-.|..|...
T Consensus 153 Rr--DCkdyv~i~~c~~W~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~------------------- 210 (447)
T KOG4497|consen 153 RR--DCKDYVQISSCKAWILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG------------------- 210 (447)
T ss_pred cc--cHHHHHHHHhhHHHHHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeeec-------------------
Confidence 10 00000000000001111222 2334456678888888766542 22233322221
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc---------------------------cceee-----cc-
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS---------------------------ARILR-----DA- 313 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------------------------~~~~~-----~~- 313 (501)
-.+..++|+|.+ ++|++|+.|+.+|+.+--+-+..... .-.+. .|
T Consensus 211 -lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~ 288 (447)
T KOG4497|consen 211 -LGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI 288 (447)
T ss_pred -cceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence 245677888887 88888888888887554332110000 00000 00
Q ss_pred ----------cccC------CCcceeeecccceeEEEEeeCCCEEEEEcC---CcEEEEEeeCCCCceeEeecccccccc
Q 010801 314 ----------AESH------GSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 314 ----------~~~~------~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~---~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
...+ .+...+......+.-++|++|..|+++..| +.+-+||++. .+....+. ...++
T Consensus 289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLi-Qk~pi-- 364 (447)
T KOG4497|consen 289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVLI-QKHPI-- 364 (447)
T ss_pred cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhhh-hccce--
Confidence 0000 000011223456888999999999999865 8999999984 44433332 22332
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
....|+|....|+.+.....+++|....
T Consensus 365 -------------raf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 365 -------------RAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred -------------eEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 6899999988888887778899998764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=144.63 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=144.3
Q ss_pred ccccceEEEEEccCCCEEEEEecC---CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.|...+.+.+|||||+.||.++.+ ..|++||+.+++. +.+..+.+|.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------------------~~l~~~~g~~----- 250 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------------------KVVASFRGHN----- 250 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-------------------------EEEecCCCcc-----
Confidence 467789999999999999987643 3699999987743 1223344443
Q ss_pred ccccccccceeEEEEeecCCCCEEEEee-CCCeEEEE--eccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..++|+ |||+.|+.++ .+|.+.|| |+.++....+
T Consensus 251 ----------~~~~wS--PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------- 287 (429)
T PRK01742 251 ----------GAPAFS--PDGSRLAFASSKDGVLNIYVMGANGGTPSQL------------------------------- 287 (429)
T ss_pred ----------CceeEC--CCCCEEEEEEecCCcEEEEEEECCCCCeEee-------------------------------
Confidence 467897 8999888765 67776665 5444442221
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
..+...+...+|+|||+.|+.+ .++...||+++..+.....
T Consensus 288 -------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~------ 330 (429)
T PRK01742 288 -------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL------ 330 (429)
T ss_pred -------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE------
Confidence 2344557789999999987754 6788899887643332222
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+ .+.. ....|+|+| +.|+..+.++ +.+||+.+++.. .+.. ......+.|+|||++
T Consensus 331 -l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~--------------~~~~~~~~~sPdG~~ 385 (429)
T PRK01742 331 -V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSS--------------TFLDESPSISPNGIM 385 (429)
T ss_pred -e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecC--------------CCCCCCceECCCCCE
Confidence 1 1222 357899999 8888877765 556999877532 1111 012346789999999
Q ss_pred EEEEc-CCcEEEEEee-CCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 342 LLSRD-YMNLKLWDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
|+.++ ++.+.+|++. ..++....+..+...+ ...+|+|-
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~ 426 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV---------------KFPAWSPY 426 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence 99875 4777777653 2477788887776543 56888874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-14 Score=123.24 Aligned_cols=268 Identities=14% Similarity=0.128 Sum_probs=166.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-.+..++|++--.-+|++..|-.|+||+-..... ..++.-.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p----------------------------t~Lks~s---------- 139 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP----------------------------TKLKSVS---------- 139 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC----------------------------ceecchh----------
Confidence 45688899999666688899999999999665221 2233222
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEecccccee-eeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+..|++++|-|. .+..|+.|+..| |.+|.....-.. ....+-.
T Consensus 140 -QrnvtclawRPl-saselavgCr~g-IciW~~s~tln~~r~~~~~s--------------------------------- 183 (445)
T KOG2139|consen 140 -QRNVTCLAWRPL-SASELAVGCRAG-ICIWSDSRTLNANRNIRMMS--------------------------------- 183 (445)
T ss_pred -hcceeEEEeccC-Ccceeeeeecce-eEEEEcCccccccccccccc---------------------------------
Confidence 266999999852 345777777655 999976532111 1000000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.. ..+..+ . .+| ..|++|.|++||..++++ .|..|.|||.. .+..+.+ .....+
T Consensus 184 --~~-----------~~qvl~-~-pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL-------~~~glg 239 (445)
T KOG2139|consen 184 --TH-----------HLQVLQ-D-PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPL-------IPKGLG 239 (445)
T ss_pred --cc-----------chhhee-C-CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCcccc-------cccCCC
Confidence 00 001111 1 455 789999999999999997 89999999999 4444432 112345
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~ 348 (501)
.+.-+.|+||+ .+|..++-|+..++|...+.--.. +-.-+ .+.|...+|+|+|++|+-...+
T Consensus 240 g~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~e---rw~lg--------------sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 240 GFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKE---RWILG--------------SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ceeeEEEcCCC-CEEEEecccceeeeehhcccceec---ceecc--------------CCceeeeeecCCCCEEEEEEcC
Confidence 67899999999 999999999999999655432111 11111 3589999999999998877667
Q ss_pred cEEEEEeeCCCCceeEe-eccccccccccccCC-----C--CCcceeeEEEEcCCCcEEEEEeCCC--------eEEEEe
Q 010801 349 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYN-----N--DSIFDKFECSVSGDGLHFATGSYSN--------LLRIFS 412 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~s~~~~~l~s~~~dg--------~i~iwd 412 (501)
.-++|.+...++..... .+....+..+.++.+ + -+-....+++|+|.|.+||+.-..+ .|.+||
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 78888876544332111 000000000111100 0 0111236899999999999765433 355666
Q ss_pred cCC
Q 010801 413 HGV 415 (501)
Q Consensus 413 ~~~ 415 (501)
...
T Consensus 382 tr~ 384 (445)
T KOG2139|consen 382 TRK 384 (445)
T ss_pred ccc
Confidence 553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-14 Score=121.77 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=109.5
Q ss_pred ceEEEEecCCCCEEEE-E--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 220 NINSISNNSDCETFVS-A--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
.|..+-|+.+ ++|. + .-+.+++.++......... .....|.+|.++.+ + |+++=++ .|.|||
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~---------~fpt~IL~VrmNr~--R-LvV~Lee-~IyIyd 112 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEI---------FFPTSILAVRMNRK--R-LVVCLEE-SIYIYD 112 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEE---------ecCCceEEEEEccc--e-EEEEEcc-cEEEEe
Confidence 4444555533 4443 3 3457899998843333322 13457899999865 3 4444433 499999
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C-CcEEEEEeeCCCCceeEeeccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~-~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
+++.++. +.++. .+.+...+.++++++.+.++|.-+ + |.|.|||+.+ -+++..+..|.+.+
T Consensus 113 I~~MklL----hTI~t----------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~l- 176 (391)
T KOG2110|consen 113 IKDMKLL----HTIET----------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPL- 176 (391)
T ss_pred cccceee----hhhhc----------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCce-
Confidence 9998765 33332 011245677788888888999642 3 9999999986 88999999999976
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe-EEEEecCCCCcc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-LRIFSHGVGSAG 419 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~ 419 (501)
-+++|+++|.+||++|+.|+ |||+.+.+|+.+
T Consensus 177 --------------Aalafs~~G~llATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 177 --------------AALAFSPDGTLLATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred --------------eEEEECCCCCEEEEeccCceEEEEEEcCCccEe
Confidence 68999999999999999998 599999988443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-14 Score=140.28 Aligned_cols=241 Identities=15% Similarity=0.204 Sum_probs=159.4
Q ss_pred CCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccc
Q 010801 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (501)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (501)
+|.+..++.+..|. ..|..++.+ ++++.+|++||.||+|++|+...-.....
T Consensus 1035 ~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------- 1086 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------- 1086 (1431)
T ss_pred CccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc---------------
Confidence 55666777777787 788899988 36779999999999999999875321100
Q ss_pred ccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEEC
Q 010801 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (501)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~ 246 (501)
..++..+| ......+.++.+.+.+..+|+| .||.|++.++
T Consensus 1087 --------------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1087 --------------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred --------------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence 12333344 3356788999999999999999 9999999998
Q ss_pred CCC-CeeeeeeecCCCCCCCcccceEEEEEecCCCc-EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 247 EIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
+.. ..........-.........|..-+|...... .++.+...+.|..||++.............
T Consensus 1128 d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1128 DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred cccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence 841 11111110111122222333444445433324 788889999999999998653321111111
Q ss_pred ecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC---CCcEEE
Q 010801 325 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFA 400 (501)
Q Consensus 325 ~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~ 400 (501)
.+.|++++.+|.+.+++.|+. |.+.+||++. +.++..+....... +..+..+| .....+
T Consensus 1195 --hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~--------------i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1195 --HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAP--------------IRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred --ccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccCC--------------cceEEeeccCCCCceEE
Confidence 368999999999999999976 9999999996 88887776433211 13455544 334555
Q ss_pred EE-e-CCCeEEEEecCCCCcceEEEecc
Q 010801 401 TG-S-YSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 401 s~-~-~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++ + ..+.|.+|++.+|.+. ..+...
T Consensus 1258 s~~~~~~nevs~wn~~~g~~~-~vl~~s 1284 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQ-TVLWAS 1284 (1431)
T ss_pred EecccCCCceeeeecccCcce-EEEEcC
Confidence 44 4 4788999999998443 555444
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=133.99 Aligned_cols=203 Identities=15% Similarity=0.153 Sum_probs=139.8
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 36 ~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
.+++|+.+|..||+|+.||.+|||++...+. +.....|. +.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------~l~e~~~~------------~e 188 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------ILEEIAHH------------AE 188 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---------------------------hhhhHhhc------------Cc
Confidence 8899999999999999999999999775443 24566677 88
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC--ccc-ccceecc
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF--AHG-YHLEWTE 192 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 192 (501)
|.++.|+ |||+.|++.+.| ..+||+++++......+.. ++. -.+..+-+..+. ..+ ..+...+
T Consensus 189 V~DL~FS--~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~--------~k~---~~~~~cRF~~d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 189 VKDLDFS--PDGKFLASIGAD-SARVWSVNTGAALARKTPF--------SKD---EMFSSCRFSVDNAQETLRLAASQFP 254 (398)
T ss_pred cccceeC--CCCcEEEEecCC-ceEEEEeccCchhhhcCCc--------ccc---hhhhhceecccCCCceEEEEEecCC
Confidence 9999998 899999999999 8999999998544333210 001 111111121111 111 1111223
Q ss_pred CcceEEEeccCceeeee--eEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 193 NMATKIANVGNSVHARC--QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+.+..|++........ .+.. ..-...|.+++.+++|++++.| .||.|.|++.. .-+.+..+ -+.|...
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~~v------k~aH~~~ 326 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQYV------KEAHLGF 326 (398)
T ss_pred CCceeEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-eeeeeEee------hhhheee
Confidence 34444444433211111 1111 1223579999999999999999 99999999988 33444432 4679999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
|+.+.|+|+. +.+++.+.+....+..+...
T Consensus 327 VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 327 VTGLTFSPDS-RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence 9999999998 99999999999998887653
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.1e-15 Score=124.67 Aligned_cols=242 Identities=11% Similarity=0.082 Sum_probs=167.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
++|+|.+|+ ++...++.+.....|.||.......
T Consensus 11 ~pitchAwn--~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 11 EPITCHAWN--SDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred Cceeeeeec--CCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 789999998 8899999999999999998876651
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+...++ ..|...|+.+.|+|..+.|+++ .|..-++|....++.-..+. .+..++...++
T Consensus 45 -------------w~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl-----vLlRiNrAAt~ 105 (361)
T KOG1523|consen 45 -------------WEPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL-----VLLRINRAATC 105 (361)
T ss_pred -------------ceeceeh-hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce-----eEEEeccceee
Confidence 1122222 6899999999999999999999 99999999985344322211 24568889999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
+.|+|.+ +.|++|+.-..|.+|-....+.-.-. +.+. +.+...|.++.|+|++-+|++|+ |+..|
T Consensus 106 V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs-Khik------------kPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 106 VKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS-KHIK------------KPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred EeecCcC-ceEEeccCccEEEEEEEecccceehh-hhhC------------CccccceeeeeccCCcceecccccCccee
Confidence 9999998 99999999999999987764321000 0011 12356899999999999999985 79999
Q ss_pred EEEeeCCCCceeEeecccc-----ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 352 LWDIRMDSTPVATFKIHEH-----LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
||..-- +.+.+-..... +-..++.-+. ..-..+..+.|+|+|..|+-.+.|..+.+=|.....+....+...
T Consensus 172 VfSayI--K~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 172 VFSAYI--KGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred EEEEee--eccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 997531 11111110000 0000000000 111123789999999999999999999999987765444555444
Q ss_pred cCcccceeecc
Q 010801 427 KNENRKPILQA 437 (501)
Q Consensus 427 ~~~v~~~~~~~ 437 (501)
.-+...+.+..
T Consensus 249 ~lP~ls~~~is 259 (361)
T KOG1523|consen 249 QLPLLSVSWIS 259 (361)
T ss_pred cCCceeeEeec
Confidence 45555555543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-15 Score=133.58 Aligned_cols=290 Identities=17% Similarity=0.215 Sum_probs=184.6
Q ss_pred CccccccceEEEEEccCCCEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 27 EELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 27 ~~~~h~~~v~~v~~s~~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
.+++|...-+.|..+|||+|+ |||.+--.|++||+..-.. .|.-|...
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlDa-- 94 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLDA-- 94 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----------------------------eeeecccc--
Confidence 356688899999999999986 7788999999999886432 24444310
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.-.-.+ .|-..++.-..|++|.+-...+.. ..+...... .-+..+...+ ...
T Consensus 95 --------e~V~feiLs--DD~SK~v~L~~DR~IefHak~G~h-y~~RIP~~G-------------RDm~y~~~sc-Dly 149 (703)
T KOG2321|consen 95 --------EVVDFEILS--DDYSKSVFLQNDRTIEFHAKYGRH-YRTRIPKFG-------------RDMKYHKPSC-DLY 149 (703)
T ss_pred --------cceeEEEec--cchhhheEeecCceeeehhhcCee-eeeecCcCC-------------ccccccCCCc-cEE
Confidence 222222222 333445555566776654433221 111110000 0000000000 000
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..| .+..+.-++++. ++.+.-| ......++++..++...+|++| .+|.|..||.+ .+..+.+++.... +.
T Consensus 150 ~~g---sg~evYRlNLEq---GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~~-v~ 220 (703)
T KOG2321|consen 150 LVG---SGSEVYRLNLEQ---GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAASS-VN 220 (703)
T ss_pred Eee---cCcceEEEEccc---ccccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeecccc-cC
Confidence 111 122333334442 3334433 4456889999999999999999 89999999999 4444444433321 23
Q ss_pred Ccc-----cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-
Q 010801 265 DLT-----EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND- 338 (501)
Q Consensus 265 ~~~-----~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~- 338 (501)
.|. ..|+++.|+.+| -.+++|+.+|.+.|||++..+... ...|. ..-+|..+.|.+.
T Consensus 221 s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~-----~kdh~-----------~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLL-----VKDHG-----------YELPIKKLDWQDTD 283 (703)
T ss_pred CCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCcee-----ecccC-----------CccceeeecccccC
Confidence 333 349999999998 999999999999999999976532 22211 1357888999775
Q ss_pred -CCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 339 -GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 339 -~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+..+++.+...++|||-.+ +++...+...... ..+|+-|++.+++++-.++.+..|=+..
T Consensus 284 ~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 284 QQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCCCcceeEEccc
Confidence 4567676669999999986 8888777654442 6899999999999999998888776654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-14 Score=113.66 Aligned_cols=257 Identities=14% Similarity=0.207 Sum_probs=162.7
Q ss_pred CCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCC
Q 010801 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (501)
Q Consensus 22 ~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (501)
+.....+..|.++|+.++|. ..+|.+|+ ||.|+=|.+...+.. ..+++ -++...-. |.
T Consensus 52 k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es---~~~K~--------------lwe~~~P~--~~ 109 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES---LATKR--------------LWEVKIPM--QV 109 (325)
T ss_pred CcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh---ccchh--------------hhhhcCcc--cc
Confidence 33444556799999999998 45677765 699999988754331 00000 01110001 11
Q ss_pred cchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 102 ~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..++. -.|+++-.. |..+-++.++.|+.++-||+++|++....
T Consensus 110 ------~~~ev-PeINam~ld--P~enSi~~AgGD~~~y~~dlE~G~i~r~~---------------------------- 152 (325)
T KOG0649|consen 110 ------DAVEV-PEINAMWLD--PSENSILFAGGDGVIYQVDLEDGRIQREY---------------------------- 152 (325)
T ss_pred ------CcccC-CccceeEec--cCCCcEEEecCCeEEEEEEecCCEEEEEE----------------------------
Confidence 00011 348888776 55566777779999999999999876654
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCC
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
.+|++-|.++.-......+++| .||++++||.+ +++.++++....
T Consensus 153 ---------------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk 198 (325)
T KOG0649|consen 153 ---------------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-TQKHVSMIEPYK 198 (325)
T ss_pred ---------------------------------cCCcceeeeeeecccCcceeecCCCccEEEEecc-ccceeEEecccc
Confidence 7999999999985555678888 99999999999 555666543321
Q ss_pred --CCCCCc-ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 261 --SNMDDL-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 261 --~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
.-+..| ...|.+++.+. ..|++| ....+.+|.++..+.. .+|.. ...+..+.|..
T Consensus 199 ~~~~lRp~~g~wigala~~e---dWlvCG-gGp~lslwhLrsse~t----~vfpi--------------pa~v~~v~F~~ 256 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVNE---DWLVCG-GGPKLSLWHLRSSEST----CVFPI--------------PARVHLVDFVD 256 (325)
T ss_pred ChhhcCcccCceeEEEeccC---ceEEec-CCCceeEEeccCCCce----EEEec--------------ccceeEeeeec
Confidence 122333 45677777664 346654 4567999999987654 56655 45788888864
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEe
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFS 412 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd 412 (501)
+.+++++ .+.|.-|.+. +............. ++..|+.. -++|-.++..+.+.|+.
T Consensus 257 --d~vl~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c---------------~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 257 --DCVLIGGEGNHVQSYTLN--GVLQANIPVESTAC---------------YSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred --ceEEEeccccceeeeeec--cEEEEeccCCccce---------------eeecccCCceEEEEecccceeeeeee
Confidence 3444444 5899999884 44443333322221 34555443 24555667777777763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=132.65 Aligned_cols=212 Identities=15% Similarity=0.158 Sum_probs=138.1
Q ss_pred cceeEEEEeecCCCCEEEEee---CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s---~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |||+.|+..+ .+..|.+|++.+++...+.
T Consensus 199 ~~~~~p~wS--PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------------------------------------- 239 (429)
T PRK03629 199 QPLMSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQVA------------------------------------- 239 (429)
T ss_pred CceeeeEEc--CCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-------------------------------------
Confidence 668899998 8999988764 3457888998877643321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.....+...+|+|||+.|+.. .++ .|++||++ .+.... +..+
T Consensus 240 -------------------------~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~--------lt~~ 285 (429)
T PRK03629 240 -------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDG 285 (429)
T ss_pred -------------------------CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEE--------ccCC
Confidence 111223457899999988764 344 58889998 343333 2233
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CCeEEEE--EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RGFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
...+....|+|+| +.|+..+. ++...+| |+.+++. +.+.. +........|+|||++|+
T Consensus 286 ~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~-------------~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 286 RSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEE
Confidence 3456789999999 87776665 3444555 5555432 11111 123456788999999988
Q ss_pred EEc-C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe---EEEEecCCC
Q 010801 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVG 416 (501)
Q Consensus 344 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~---i~iwd~~~~ 416 (501)
... + ..|++||+.+ +. ...+..... . ....|+|||++|+..+.++. +.+++++..
T Consensus 347 ~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~-~---------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLAT-GG-VQVLTDTFL-D---------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEccCCCceEEEEECCC-CC-eEEeCCCCC-C---------------CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 643 2 4688889874 43 333432111 1 35789999999999887764 677777533
Q ss_pred CcceEEEecccCcccceeecc
Q 010801 417 SAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~ 437 (501)
....+.+|...+...+|+|
T Consensus 409 --~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 --FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --CeEECccCCCCcCCcccCC
Confidence 3366777888888888876
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=132.13 Aligned_cols=188 Identities=16% Similarity=0.121 Sum_probs=139.1
Q ss_pred EEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
..++|+++|..++++ .||++|+|+........ ....|...|.++.|+||| ++|++.+.| ..++|+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 679999999999999 99999999976343333 256789999999999999 999999999 8999999998
Q ss_pred cccccccceeecccccCCCcceeeecccceeEEEEeeCC---CE-EEEE-cC-CcEEEEEeeCCCC-----ceeEeeccc
Q 010801 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QH-LLSR-DY-MNLKLWDIRMDST-----PVATFKIHE 369 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~---~~-l~~~-~~-~~i~lwd~~~~~~-----~~~~~~~~~ 369 (501)
....... -++. ......+.|+.|+ .+ +++. .. +.|+.||+..... ..+.+..+.
T Consensus 218 ~~~a~~t-~~~k--------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 218 AALARKT-PFSK--------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred chhhhcC-Cccc--------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 4332110 0111 2457788888776 33 3332 33 7888888754222 111111121
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCcccee
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
. +.+++.+++|+++|.|+.||.|.|++..+.+.....-++|...|+.+.|+| +.+. +
T Consensus 283 -------------s---iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P--dsr~-----~ 339 (398)
T KOG0771|consen 283 -------------S---ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP--DSRY-----L 339 (398)
T ss_pred -------------c---ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC--CcCc-----c
Confidence 1 279999999999999999999999999988788788889999999999999 5555 5
Q ss_pred eeecccce
Q 010801 450 TRGLYRQA 457 (501)
Q Consensus 450 ~~~~~~~~ 457 (501)
++.+.+..
T Consensus 340 ~svSs~~~ 347 (398)
T KOG0771|consen 340 ASVSSDNE 347 (398)
T ss_pred cccccCCc
Confidence 55554444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=134.88 Aligned_cols=248 Identities=13% Similarity=0.126 Sum_probs=159.7
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
+++.||+ +.|++++|+ .+|.+|++||.|-.+.|||....+....+
T Consensus 44 ~eL~GH~------------GCVN~LeWn--~dG~lL~SGSDD~r~ivWd~~~~KllhsI--------------------- 88 (758)
T KOG1310|consen 44 AELTGHT------------GCVNCLEWN--ADGELLASGSDDTRLIVWDPFEYKLLHSI--------------------- 88 (758)
T ss_pred hhhcccc------------ceecceeec--CCCCEEeecCCcceEEeecchhcceeeee---------------------
Confidence 6689999 999999997 89999999999999999999865543322
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCCe
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
-.+|...|.++.|-| +.+++++| .|..|+++|+...+.
T Consensus 89 ---------------------------------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 89 ---------------------------------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred ---------------------------------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 169999999999987 45678888 999999999984211
Q ss_pred ee--eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 252 CF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 252 ~~--~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
-- .-......-...|...|..++..|++++.+.++++||+|+-+|++....+......... ... +...--.
T Consensus 130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~------l~n-y~~~lie 202 (758)
T KOG1310|consen 130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI------LVN-YNPQLIE 202 (758)
T ss_pred cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH------HHH-hchhhhe
Confidence 00 00000001245688899999999999999999999999999999986544221100000 000 0001134
Q ss_pred eeEEEEeeCC-CEEEEE-cCCcEEEEEeeCCCCceeEeecccc-------ccccccccC-------CCCCcceeeEEEEc
Q 010801 330 ISDIKFANDG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEH-------LRPKLCDLY-------NNDSIFDKFECSVS 393 (501)
Q Consensus 330 i~~~~~sp~~-~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~-------~~~~~~~~~-------~~~~~~~~~~~~~s 393 (501)
..++..+|.. .+|++| ++--.++||.+...+....-..+.. .+...++.. ...-+.-.+-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 6788899864 567776 4688999995431111110000000 011111100 01111123678999
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCCcceEEE
Q 010801 394 GDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 394 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
|+|.-|...-..-.|+++|+..++.....+
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 998766655555689999998876654433
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-16 Score=136.48 Aligned_cols=264 Identities=12% Similarity=0.123 Sum_probs=199.7
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.-+.+.+. .+|.+++.++..|.|-.+|..++++...+
T Consensus 131 GPY~~~yt--rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----------------------------------------- 167 (545)
T KOG1272|consen 131 GPYHLDYT--RNGRHLLLGGRKGHLAAFDWVTKKLHFEI----------------------------------------- 167 (545)
T ss_pred CCeeeeec--CCccEEEecCCccceeeeecccceeeeee-----------------------------------------
Confidence 45667776 79999999999999999999998866543
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEE
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 274 (501)
.-...|.++.|-.+.+++|++....++|||-. +.+... +.. ...|..+.
T Consensus 168 ---------------------~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHC--------lk~-~~~v~rLe 216 (545)
T KOG1272|consen 168 ---------------------NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHC--------LKR-HIRVARLE 216 (545)
T ss_pred ---------------------ehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEee--------hhh-cCchhhhc
Confidence 12346778888888889999988899999977 333322 232 35688999
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 353 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lw 353 (501)
|-|.. -+|++++..|.++.-|+.+|+++. ..... .+.+..|.-+|-+..+-.|. .|+|.+|
T Consensus 217 FLPyH-fLL~~~~~~G~L~Y~DVS~GklVa---~~~t~--------------~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 217 FLPYH-FLLVAASEAGFLKYQDVSTGKLVA---SIRTG--------------AGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ccchh-heeeecccCCceEEEeechhhhhH---HHHcc--------------CCccchhhcCCccceEEEcCCCceEEec
Confidence 99998 899999999999999999997653 11122 35678888888877777884 5999999
Q ss_pred EeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccce
Q 010801 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 433 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 433 (501)
.... ..++..+..|.+++ .++++.++|+|+||.+.|..++|||+.+...+ .++.. ..+...+
T Consensus 279 SP~s-kePLvKiLcH~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 279 SPNS-KEPLVKILCHRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPASNL 340 (545)
T ss_pred CCCC-cchHHHHHhcCCCc---------------ceEEECCCCcEEeecccccceeEeeecccccc-ceeec-CCCcccc
Confidence 9986 77888888898877 78999999999999999999999999987544 33333 4456667
Q ss_pred eeccCCccccCccceeeeecccceeecccc-----C--CcccccccCCCeEEEEEccCCCEEEEeeCCeE
Q 010801 434 ILQAAPRARRSSLSNLTRGLYRQAHENSSS-----G--HHELSYNLSSKLLHLAWHPTTNLIACANGNSL 496 (501)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~-----~--~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~ 496 (501)
+++.. | + ||.+-.+...+|... . ..........+|..+.|+|-+..|.+|...|+
T Consensus 341 s~Sqk--g-l-----LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 341 SLSQK--G-L-----LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ccccc--c-c-----eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 77652 2 2 677777777999211 1 11112234569999999999999999876553
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-14 Score=137.05 Aligned_cols=296 Identities=14% Similarity=0.135 Sum_probs=177.6
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCC--CCCCcccccceeccC
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAHGYHLEWTEN 193 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 193 (501)
-..+.|+| =...++++...-.|++||.+.++...-+.... .....+....+ ..+...+..+ +.+
T Consensus 1067 pk~~~~hp--f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----------~~~t~Vs~l~liNe~D~aLlLta--s~d 1132 (1387)
T KOG1517|consen 1067 PKTLKFHP--FEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----------FPDTRVSDLELINEQDDALLLTA--SSD 1132 (1387)
T ss_pred CceeeecC--CCceeEEcCCcceEEEEecccCceeccccCCC----------CCCCccceeeeecccchhheeee--ccC
Confidence 45567763 34578888767789999999887644332111 11122222222 1222333333 358
Q ss_pred cceEEEeccCce--eeeeeEee------cCCcccceEEEEecCCCCEEEE-EcCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 194 MATKIANVGNSV--HARCQKVY------PHAHDFNINSISNNSDCETFVS-ADDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 194 ~~i~~w~~~~~~--~~~~~~~~------~~~~~~~v~~l~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
|.|++|+--... ..+.+... +.+..+.=.-+.|......|++ |+-..|+|||.. ..+.+.-+ ..
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~-~E~~~~di------P~ 1205 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH-KEQVVADI------PY 1205 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc-cceeEeec------cc
Confidence 999999865432 11222111 1111111134567665555555 588999999999 44444332 23
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc--eeEEEEeeCCCE-
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQH- 341 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~sp~~~~- 341 (501)
+.+..|+++.-+-.++++++.|..||.|++||.|..... ..+..+.. |... |..+.+-+.|--
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~-------------h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYRE-------------HNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecc-------------cCCcccceeEEeecCCCcc
Confidence 345567777665444499999999999999999875431 22233433 4444 999999987654
Q ss_pred EEEEc-CCcEEEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 342 LLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
|++|+ +|.|++||++.. ......+..|..... +.+++..+++...+|+|+. +.|+||++... .+
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs------------~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l 1337 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS------------ALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QL 1337 (1387)
T ss_pred eeeeccCCeEEEEecccCcccccceeeeccccCc------------cceeeeeccCCCeeeecCc-ceEEEEecChh-hh
Confidence 77775 699999999962 111222222221100 0178999999999999999 99999998744 22
Q ss_pred eEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCC-eEEE
Q 010801 420 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF 498 (501)
Q Consensus 420 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i 498 (501)
..++.+ + +.+ -.-...+.+++|||-.-+||+|+.| .+.|
T Consensus 1338 -~~~k~n----------~---~F~--------------------------~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1338 -NIIKYN----------P---GFM--------------------------GQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred -cccccC----------c---ccc--------------------------cCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 222211 1 111 0011255899999999999999855 4777
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|.
T Consensus 1378 Ys 1379 (1387)
T KOG1517|consen 1378 YS 1379 (1387)
T ss_pred ee
Confidence 75
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-13 Score=115.91 Aligned_cols=266 Identities=13% Similarity=0.109 Sum_probs=158.2
Q ss_pred ccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
+..|+|++|-| .++.||+|+..| |.||..+..... .+.++.+ .. ....+..-.||
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~---~r~~~~~-s~---------~~~qvl~~pgh---------- 195 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA---NRNIRMM-ST---------HHLQVLQDPGH---------- 195 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCccccc---ccccccc-cc---------cchhheeCCCC----------
Confidence 56899999999 457889998755 899987632211 0000000 00 00001112334
Q ss_pred ccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|++++|. +||..+++++ .|..|+|||+.++..+.+.
T Consensus 196 ---~pVtsmqwn--~dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------------------------ 234 (445)
T KOG2139|consen 196 ---NPVTSMQWN--EDGTILVTASFGSSSIMIWDPDTGQKIPLI------------------------------------ 234 (445)
T ss_pred ---ceeeEEEEc--CCCCEEeecccCcceEEEEcCCCCCccccc------------------------------------
Confidence 569999997 7899999998 6789999999998865543
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..-.+.+.-+.|+|||..|.++ -|+..++|+........+ -.-..+
T Consensus 235 -------------------------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--------w~lgsg 281 (445)
T KOG2139|consen 235 -------------------------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--------WILGSG 281 (445)
T ss_pred -------------------------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc--------eeccCC
Confidence 1224567789999999999999 999999997663332222 111234
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccc--c------ccc-eeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--H------SAR-ILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--~------~~~-~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.|...+|+|+|..+|++.+.. -++|.+.-..... . ... +.+. ++... ...-.--.+.+.+++|.|.|
T Consensus 282 rvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL-~e~ti-~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADL-QEVTI-CAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccc-hhhhh-hcCcccccCccceeeECCCC
Confidence 899999999994455555443 3445443221110 0 000 0000 00000 00001123678999999999
Q ss_pred CEEEEE---c----C--CcEEEEEeeCCCCceeEee--ccccccccccccCCCCCcceeeEEEEcC---CCcEEEEEeCC
Q 010801 340 QHLLSR---D----Y--MNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYS 405 (501)
Q Consensus 340 ~~l~~~---~----~--~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~s~~~d 405 (501)
.+||+. . + ..|.+||.+. .+...+. +...... . .-++|+| ++.+|..+-..
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~--sp~vels~cg~i~ge~----------P---~~IsF~pl~n~g~lLsiaWsT 422 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRK--SPPVELSYCGMIGGEY----------P---AYISFGPLKNEGRLLSIAWST 422 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccc--cCceEEEecccccCCC----------C---ceEEeeecccCCcEEEEEecc
Confidence 999974 1 1 5677888873 3333332 1111100 0 2466665 57777777777
Q ss_pred CeEEEEecC
Q 010801 406 NLLRIFSHG 414 (501)
Q Consensus 406 g~i~iwd~~ 414 (501)
|.+.-|++.
T Consensus 423 Griq~ypl~ 431 (445)
T KOG2139|consen 423 GRIQRYPLT 431 (445)
T ss_pred CceEeeeeE
Confidence 888777654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-12 Score=108.35 Aligned_cols=163 Identities=16% Similarity=0.227 Sum_probs=115.2
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC-cEEEEEe-CCCeEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSS-SRGFVR 293 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~-~dg~i~ 293 (501)
....+|.++.+.++ .|++.-.+.|++|.....-+.+..++.. .......+ ..|... .+||.-+ .-|.|+
T Consensus 92 ~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~-----~NPkGlC~--~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR-----SNPKGLCS--LCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc-----cCCCceEe--ecCCCCceEEEcCCCccceEE
Confidence 34568888888765 6777778899999988544444443221 11112233 333321 4555544 368999
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-C-cEEEEEeeCCCCceeEeeccccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~-~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
|-|+...... ....+..|...|.+++.+-+|..+|+++. | -|||||..+ +.++++++-....
T Consensus 163 i~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 163 IVDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDR 226 (346)
T ss_pred EEEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCch
Confidence 9998765321 12234568999999999999999999975 4 589999996 8888888644433
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
. ++.+++|||++.+||+.|+.|+|+||.+...
T Consensus 227 A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 227 A-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred h-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2 1279999999999999999999999998764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=130.11 Aligned_cols=305 Identities=12% Similarity=0.101 Sum_probs=210.6
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.....|.+|. +.|+.|.|+ ..|..|++++.|..|.+||...+..+...
T Consensus 133 ~l~~kL~~H~------------GcVntV~FN--~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------------------ 180 (559)
T KOG1334|consen 133 RLQKKLNKHK------------GCVNTVHFN--QRGDVLASGSDDLQVVVWDWVSGSPKLSF------------------ 180 (559)
T ss_pred hhhhcccCCC------------Cccceeeec--ccCceeeccCccceEEeehhhccCccccc------------------
Confidence 3445677888 999999997 78999999999999999999877643321
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..+|...|....|-| +...++++ .||.+++=.+..
T Consensus 181 ------------------------------------------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 181 ------------------------------------------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred ------------------------------------------ccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 258888888877866 34566666 999999987764
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
.+.+..+ ..+..|.++|.-++..|+.+..|++++.|+.+.-+|++.+....... .. ...... .-
T Consensus 219 t~~~e~t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---cr-~~~~~~-------~v 282 (559)
T KOG1334|consen 219 TGYVENT-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---CR-EADEKE-------RV 282 (559)
T ss_pred ccceecc-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee---ee-ccCCcc-------ce
Confidence 5544332 24678999999999999998899999999999999999875432111 11 000000 12
Q ss_pred ceeEEEEeeCCC-EEEEE-cCCcEEEEEeeCCCC-----ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 329 SISDIKFANDGQ-HLLSR-DYMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 329 ~i~~~~~sp~~~-~l~~~-~~~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
....++..|... .+++| .|.-+++||.+.-.+ .+..+..+.. - .+....|++++++.++.-|.+
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl--------~-~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL--------V-EDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc--------c-ccCcccceeEEecCCccceee
Confidence 578888998665 56665 468899999864111 1222221111 0 133344589999977655555
Q ss_pred EeCCCeEEEEecCC--C----------CcceEEEecccCc--ccceeeccCCccccCccceeeeecccce-eec--cccC
Q 010801 402 GSYSNLLRIFSHGV--G----------SAGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG 464 (501)
Q Consensus 402 ~~~dg~i~iwd~~~--~----------~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~~ 464 (501)
.-.|-.|+++.-.- | ......+++|.+. |..+-|.-. ...+ +++|+.-|. -+| +.++
T Consensus 354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEy-----VvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEY-----VVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccce-----EEecCccceEEEEecchhH
Confidence 55667789984322 2 1122347888764 666666653 3344 788888888 999 5556
Q ss_pred CcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEeC
Q 010801 465 HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 465 ~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 501 (501)
++..+.+-..-|+||.=||--.+||+++ +-.|.||..
T Consensus 428 ii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 428 IIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred HHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 6666666666899999999999999988 555999973
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=126.26 Aligned_cols=211 Identities=12% Similarity=0.045 Sum_probs=133.6
Q ss_pred cceeEEEEeecCCCCEEEEeeC---CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~---d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |||+.|+..+. +..|.+||+.+++...+
T Consensus 202 ~~v~~p~wS--pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-------------------------------------- 241 (435)
T PRK05137 202 SLVLTPRFS--PNRQEITYMSYANGRPRVYLLDLETGQRELV-------------------------------------- 241 (435)
T ss_pred CCeEeeEEC--CCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence 779999998 78999888763 46899999987764332
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCC--eEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
..+...+...+|+|||+.|+. . .++ .|.+||+. ++.... +..+
T Consensus 242 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------Lt~~ 288 (435)
T PRK05137 242 ------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTR--------LTDS 288 (435)
T ss_pred ------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEE--------ccCC
Confidence 123345567899999998764 3 454 47777887 343333 3344
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
........|+|+| +.|+..+. +| .|.++|+..++.. ++... ...+....|+|||++|+
T Consensus 289 ~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~--------------~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 289 PAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR----RISFG--------------GGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE----EeecC--------------CCcccCeEECCCCCEEE
Confidence 4556778999999 77776664 33 5777887665332 11111 23466788999999998
Q ss_pred EEc-C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC------CeEEEEec
Q 010801 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSH 413 (501)
Q Consensus 344 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~ 413 (501)
... + ..|.+||+. +.....+.... .. ....|+|||++|+..+.+ ..++++|+
T Consensus 350 ~~~~~~~~~~i~~~d~~--~~~~~~lt~~~-~~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPD--GSGERILTSGF-LV---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred EEEcCCCceEEEEEECC--CCceEeccCCC-CC---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 653 2 367788875 33333332211 11 468999999998765543 25777887
Q ss_pred CCCCcceEEEecccCcccceeecc
Q 010801 414 GVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 414 ~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
..+.. ..+.. ...+...+|+|
T Consensus 412 ~g~~~--~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 412 TGRNE--REVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCce--EEccC-CCCccCcccCC
Confidence 65532 33332 23344555554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-13 Score=127.72 Aligned_cols=214 Identities=13% Similarity=0.130 Sum_probs=132.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+.+.+|+ |+|+.|+..+.+ ..|.+||+.+++...+.
T Consensus 196 ~~v~~p~wS--PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------------------------------------- 236 (427)
T PRK02889 196 EPIISPAWS--PDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------------------------------------- 236 (427)
T ss_pred CCcccceEc--CCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------------------------------------
Confidence 678899998 789999887642 46999999887644321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.....+...+|+|||+.|+. . .++...||.++........ +..+..
T Consensus 237 -------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~ 284 (427)
T PRK02889 237 -------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSG 284 (427)
T ss_pred -------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCC
Confidence 11233457899999998875 4 6777666655422222221 333444
Q ss_pred ceEEEEEecCCCcEEEEEeC-CCeEEEEEcc--CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
......|+||| +.|+..+. +|...+|.+. +++. +.+.. +........|+|||++|+..
T Consensus 285 ~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~-------------~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 285 IDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAA-----QRVTF-------------TGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCce-----EEEec-------------CCCCcCceEECCCCCEEEEE
Confidence 55678899999 77665554 5666777654 3321 11111 01234467899999999865
Q ss_pred c-C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC-e--EEEEecCCCCc
Q 010801 346 D-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-L--LRIFSHGVGSA 418 (501)
Q Consensus 346 ~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~--i~iwd~~~~~~ 418 (501)
+ + ..|++||+.+ ++. ..+...... ....|+|||++|+..+.++ . +.+.++. + .
T Consensus 346 s~~~g~~~I~v~d~~~-g~~-~~lt~~~~~----------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~ 405 (427)
T PRK02889 346 SRVGGAFKLYVQDLAT-GQV-TALTDTTRD----------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-R 405 (427)
T ss_pred EccCCcEEEEEEECCC-CCe-EEccCCCCc----------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-C
Confidence 4 2 3699999875 443 333322111 3689999999988777543 3 4555553 3 3
Q ss_pred ceEEEecccCcccceeecc
Q 010801 419 GGITVEAGKNENRKPILQA 437 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~~ 437 (501)
....+..+.+.+...+++|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 3455555666666667766
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-13 Score=127.15 Aligned_cols=216 Identities=12% Similarity=0.131 Sum_probs=136.3
Q ss_pred CcccceEEEEecCCCCEEEEE----cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE-eCCC
Q 010801 216 AHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRG 290 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg 290 (501)
.+...+.+.+|+|||+.|+.. .+..|.+|++.. ++...+. .+.+ .+..++|+||| +.|+.. +.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~l~-----~~~~---~~~~~~~SPDG-~~La~~~~~~g 265 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQVA-----SFPR---HNGAPAFSPDG-SKLAFALSKTG 265 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEEcc-----CCCC---CcCCeEECCCC-CEEEEEEcCCC
Confidence 345678899999999988863 245799999984 4333221 1223 34468999999 766654 4455
Q ss_pred --eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEee
Q 010801 291 --FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 291 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~ 366 (501)
.|.+||+.+++.. +.... ...+....|+|||+.|+..++ +...||.+...+.....+.
T Consensus 266 ~~~I~~~d~~tg~~~----~lt~~--------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 266 SLNLYVMDLASGQIR----QVTDG--------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CcEEEEEECCCCCEE----EccCC--------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 5888999876432 22111 235678999999998886643 4555554432233344443
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
...... ....|+|||++|+..+.+ ..|.+||+.++.. ..+... .......++| +|+.
T Consensus 328 ~~~~~~---------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt~~-~~~~~p~~Sp--DG~~ 387 (429)
T PRK03629 328 WEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLTDT-FLDETPSIAP--NGTM 387 (429)
T ss_pred cCCCCc---------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEeCCC-CCCCCceECC--CCCE
Confidence 322211 368999999998876543 3588899987743 333322 2234667877 8887
Q ss_pred Cccceeeeecccce--eec--cccC-CcccccccCCCeEEEEEccC
Q 010801 444 SSLSNLTRGLYRQA--HEN--SSSG-HHELSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 444 ~~~~~l~~~~~~~~--~iw--~~~~-~~~~~~~~~~~i~~~~~sp~ 484 (501)
++..+.++. .++ ..++ ....+..+...+...+|+|-
T Consensus 388 -----i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 388 -----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -----EEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 777777665 333 4433 34445567778889999983
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=116.38 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=103.2
Q ss_pred EEEEecCCCCEEEEE-c---C-------CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE--eC
Q 010801 222 NSISNNSDCETFVSA-D---D-------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SS 288 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~-~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~--~~ 288 (501)
..+.|+++|..|+.- . | +...+|.++........+. + ...++|.+++|+|+| +.|++. ..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l-~~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----L-KKEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----c-cCCCceEEEEECcCC-CEEEEEEccC
Confidence 357899999888763 2 1 3456666643333333221 2 134569999999999 665544 45
Q ss_pred CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----CCcEEEEEeeCCCCceeE
Q 010801 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 289 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~~~i~lwd~~~~~~~~~~ 364 (501)
++.|.+||++.. .. ..+. ...++.+.|+|+|++|++++ .|.|.+||++. .+.+..
T Consensus 82 ~~~v~lyd~~~~-~i----~~~~---------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 82 PAKVTLYDVKGK-KI----FSFG---------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred CcccEEEcCccc-Ee----Eeec---------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 789999999632 11 2222 25678999999999999864 27899999984 666666
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC------CCeEEEEecC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG 414 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 414 (501)
..... . +.++|+|||++|+++.. |+.++||+..
T Consensus 141 ~~~~~-~----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 141 FEHSD-A----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cccCc-E----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 54322 2 68999999999998874 7889999986
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.6e-13 Score=127.33 Aligned_cols=212 Identities=15% Similarity=0.118 Sum_probs=133.8
Q ss_pred cceeEEEEeecCCCCEEEEeeC---CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~---d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |+|+.|+..+. +..|.+|++.+++...+.
T Consensus 204 ~~v~~p~wS--pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------------------------------------- 244 (433)
T PRK04922 204 EPILSPAWS--PDGKKLAYVSFERGRSAIYVQDLATGQRELVA------------------------------------- 244 (433)
T ss_pred CccccccCC--CCCCEEEEEecCCCCcEEEEEECCCCCEEEec-------------------------------------
Confidence 668899998 78999998763 346999999877643321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCC--eEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.......+.+|+|||+.++. . .++ .|++||+. .+.... +..+
T Consensus 245 -------------------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~--------lt~~ 290 (433)
T PRK04922 245 -------------------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTR--------LTNH 290 (433)
T ss_pred -------------------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEE--------CccC
Confidence 11223346799999998764 3 444 69999998 344332 3334
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CCe--EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
......++|+|+| +.|+..+. +|. |.++|+.+++.. + +.. +......++|+|||++|+
T Consensus 291 ~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~----~-lt~-------------~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAE----R-LTF-------------QGNYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeE----E-eec-------------CCCCccCEEECCCCCEEE
Confidence 4445678999999 77776654 454 556666555321 1 111 012345689999999998
Q ss_pred EEc-C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCC
Q 010801 344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG 416 (501)
Q Consensus 344 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~ 416 (501)
..+ + ..|.+||+.+ ++.. .+.... .. ....|+|||++|+..+.+ +.|.++++..+
T Consensus 352 ~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~-~~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLST-GSVR-TLTPGS-LD---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEECCCCceeEEEEECCC-CCeE-ECCCCC-CC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 653 2 3699999874 4433 333211 11 357999999988876653 45777777543
Q ss_pred CcceEEEecccCcccceeecc
Q 010801 417 SAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~ 437 (501)
....+..+...+...+++|
T Consensus 414 --~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --ceEEcccCCCCCCCCccCC
Confidence 3345555555555555554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-11 Score=113.58 Aligned_cols=313 Identities=11% Similarity=0.125 Sum_probs=190.7
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...++..++|++|+++|.+. +..++|++..+++. .+....
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~--------------------------~lt~~~------------- 73 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV--------------------------VLCVEL------------- 73 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE--------------------------EEEecc-------------
Confidence 34578899999999998865 67899999887632 111111
Q ss_pred cccceeEEEEeecCCCCEEEEe-----eC-----CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 112 IEEKINRVRWCAAPNGSMFILS-----TN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~-----s~-----d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..++++.|+ |-+.+|.+- .. ...+++|+++++.....+ .+....+ ....++.+
T Consensus 74 --~~~~~L~fS--P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~-----------q~k~Q~~--W~~qfs~d 136 (566)
T KOG2315|consen 74 --KKTYDLLFS--PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQI-----------QKKMQNG--WVPQFSID 136 (566)
T ss_pred --ceeeeeeec--ccccccccccccccccCCCCCCCceeeeeeccceehhhe-----------ehhhhcC--cccccccc
Confidence 237888997 677777662 12 235779999884322211 1111112 12222222
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEE---E---cCCeEEEEECCCCCeee
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVS---A---DDLRINLWNLEISDQCF 253 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~---~---~d~~i~iwd~~~~~~~~ 253 (501)
....+ ....+.+.+++...- ..... .-|...|..+.++|.+ ..+++ + .-..|+||.....+ ..
T Consensus 137 Esl~a---rlv~nev~f~~~~~f--~~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~ 207 (566)
T KOG2315|consen 137 ESLAA---RLVSNEVQFYDLGSF--KTIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QH 207 (566)
T ss_pred hhhhh---hhhcceEEEEecCCc--cceee---eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-cc
Confidence 22211 123667888888761 11222 2356788888998863 34444 1 34679999877222 11
Q ss_pred eeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC--C---------CeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--R---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
..+..+ ++ ....-..+.|++-|..+|+.++. | .++++.++...+. ....
T Consensus 208 ~~~a~k--sF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------~V~L---------- 267 (566)
T KOG2315|consen 208 QPVANK--SF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV------SVPL---------- 267 (566)
T ss_pred chhhhc--cc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE------EEec----------
Confidence 111000 11 11223467899887445555443 2 3577777763221 1111
Q ss_pred eeecccceeEEEEeeCCCEEEEE-c-C-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 323 FTEIIASISDIKFANDGQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~-~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
.-.++|.++.|+|+|+-+++. + . -.+.|||++ +.++..+..... +++-|+|.|++|
T Consensus 268 --~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~egpR-----------------N~~~fnp~g~ii 326 (566)
T KOG2315|consen 268 --LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEGPR-----------------NTAFFNPHGNII 326 (566)
T ss_pred --CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCCCc-----------------cceEECCCCCEE
Confidence 014799999999999877765 3 3 899999997 788777653333 579999999999
Q ss_pred EEEeC---CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCe
Q 010801 400 ATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKL 476 (501)
Q Consensus 400 ~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i 476 (501)
+.+|- -|.|-|||+.+.+.+ ..+++. .-
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i-~~~~a~------------------------------------------------~t 357 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLI-AKFKAA------------------------------------------------NT 357 (566)
T ss_pred EEeecCCCCCceEEEeccchhhc-cccccC------------------------------------------------Cc
Confidence 88776 488999999985333 111100 22
Q ss_pred EEEEEccCCCEEEEee-------CCeEEEEe
Q 010801 477 LHLAWHPTTNLIACAN-------GNSLFFHY 500 (501)
Q Consensus 477 ~~~~~sp~~~~la~~~-------~~~~~i~~ 500 (501)
+-..|+|||.++.+++ +|++.||.
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 4679999999998887 67888885
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=117.96 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=170.7
Q ss_pred cccceEEEEEccCCC--EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g~--~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
....|+.++|.-+++ .|...+.|..+..+.+...... + +..-........
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-------s--------------~~~~~~~~~l~~------- 105 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-------S--------------SLDDAKTVSLGT------- 105 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccc-------c--------------cccccccccccc-------
Confidence 457788888887653 3333336667777776655432 0 000011222223
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|..++.. +..|++|-.+|.+.+|....+.....
T Consensus 106 -----~~I~gl~~~----dg~Litc~~sG~l~~~~~k~~d~hss------------------------------------ 140 (412)
T KOG3881|consen 106 -----KSIKGLKLA----DGTLITCVSSGNLQVRHDKSGDLHSS------------------------------------ 140 (412)
T ss_pred -----ccccchhhc----CCEEEEEecCCcEEEEeccCCccccc------------------------------------
Confidence 677777763 45778888899999999885431100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEE-EEE-cC--CeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DD--LRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+.. ..-...+..+.-++....+ ++| .. ..+++||++...+...--.++...+.
T Consensus 141 --------------------~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 141 --------------------KLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG 198 (412)
T ss_pred --------------------ccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccc
Confidence 0000 0112344455555544444 446 66 88999999954333322111111111
Q ss_pred -CcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 265 -DLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 265 -~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
.-.-+++++.|-+. . +.|++++.-+.+++||.+.++... ..+.. -..+++++...|+|++
T Consensus 199 LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV---~~fd~-------------~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPV---AQFDF-------------LENPISSTGLTPSGNF 261 (412)
T ss_pred ceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcce---eEecc-------------ccCcceeeeecCCCcE
Confidence 11235678888776 5 899999999999999999775432 33332 1468999999999999
Q ss_pred EEEEcC-CcEEEEEeeCCCCceeE-eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 342 LLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 342 l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
|++|.. +.+..||++. ++.... +.+-.+.+ +++..+|.+++|+++|-|..|||+|+++.+.+
T Consensus 262 Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred EEEecccchhheecccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 999976 9999999996 666555 66666654 78999999999999999999999999985433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-12 Score=126.28 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=133.0
Q ss_pred CcccceEEEEecCCCCEEEEE--cC--CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCC
Q 010801 216 AHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG 290 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg 290 (501)
.+...+.+.+|+|||+.|+.. .+ ..|.+||+.. ++...+ ......+...+|+|+| +.|+ +.+.+|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~~l--------~~~~g~~~~~~~SPDG-~~la~~~~~~g 262 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRRVV--------ANFKGSNSAPAWSPDG-RTLAVALSRDG 262 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEEEe--------ecCCCCccceEECCCC-CEEEEEEccCC
Confidence 455678889999999998875 32 4699999984 433322 2222345678999999 6665 567788
Q ss_pred eEEEEEcc--CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEee
Q 010801 291 FVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 291 ~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~ 366 (501)
...+|.+. .+.. +.+.. +........|+|||+.|+..++ +...+|.+...+.....+.
T Consensus 263 ~~~Iy~~d~~~~~~-----~~lt~-------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 263 NSQIYTVNADGSGL-----RRLTQ-------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CceEEEEECCCCCc-----EECCC-------------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 77776553 3321 12211 1234566789999998886543 6677776653233333332
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---eEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
...... ...+|+|||++|+..+.++ .|.+||+.+++.. .+... .......|+| +++.
T Consensus 325 ~~g~~~---------------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~sp--dg~~ 384 (427)
T PRK02889 325 FTGSYN---------------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAP--NGRY 384 (427)
T ss_pred cCCCCc---------------CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECC--CCCE
Confidence 221111 3588999999998777654 6999999887432 33222 2346778888 7776
Q ss_pred Cccceeeeecccce--eec--cccCCcc-cccccCCCeEEEEEccC
Q 010801 444 SSLSNLTRGLYRQA--HEN--SSSGHHE-LSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 444 ~~~~~l~~~~~~~~--~iw--~~~~~~~-~~~~~~~~i~~~~~sp~ 484 (501)
|+..+.++. .++ ..++... ....+...+...+|+|-
T Consensus 385 -----l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 385 -----ILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -----EEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 666665554 455 2233222 23334566777888874
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-13 Score=128.80 Aligned_cols=206 Identities=12% Similarity=0.088 Sum_probs=130.7
Q ss_pred ccccceEEEEEccCCCEEEEEecC---CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.|...+.+.+|+|||+.||..+.+ ..|.+||+.+++. ..+..+.
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----------------------------~~l~~~~----- 247 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----------------------------ELVASFR----- 247 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE----------------------------EEeccCC-----
Confidence 466789999999999999987633 4699999987643 1222222
Q ss_pred ccccccccceeEEEEeecCCCCEEEE-eeCCC--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s-~s~d~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+....++|+ |+|+.++. .+.++ .|.+||+.+++...+
T Consensus 248 -------g~~~~~~~S--pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------------------------------- 287 (433)
T PRK04922 248 -------GINGAPSFS--PDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------------------------------- 287 (433)
T ss_pred -------CCccCceEC--CCCCEEEEEEeCCCCceEEEEECCCCCeEEC-------------------------------
Confidence 334577897 78887764 45554 588888887764332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCe--EEEEECCCCCeeeeeeecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~ 259 (501)
..+.......+|+|||+.|+.+ .++. |.++++. ++....+.
T Consensus 288 -------------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~lt--- 332 (433)
T PRK04922 288 -------------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERLT--- 332 (433)
T ss_pred -------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEee---
Confidence 2233334567999999988765 4554 6666665 33332221
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCC---eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
. +......++|+|+| +.|+..+.++ .|.+||+.+++.. .+.. ........|+
T Consensus 333 ---~--~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~--------------~~~~~~p~~s 387 (433)
T PRK04922 333 ---F--QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTP--------------GSLDESPSFA 387 (433)
T ss_pred ---c--CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-----ECCC--------------CCCCCCceEC
Confidence 1 22234568999999 8777765433 6899999776432 2211 1133456899
Q ss_pred eCCCEEEEEc-C---CcEEEEEeeCCCCceeEeecccc
Q 010801 337 NDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 337 p~~~~l~~~~-~---~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
|||++|+..+ + ..|+++++. +.....+..+..
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g 423 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG 423 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence 9999887653 2 457777764 555566654433
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-11 Score=114.34 Aligned_cols=322 Identities=12% Similarity=0.086 Sum_probs=173.4
Q ss_pred CEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEee
Q 010801 45 DYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (501)
Q Consensus 45 ~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (501)
+++ ++-..+|.|.|.|..+.+. +..+.... +.-..+.|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~---------------------------~~~i~~~~------------~~h~~~~~s- 45 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV---------------------------VARIPTGG------------APHAGLKFS- 45 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE---------------------------EEEEE-ST------------TEEEEEE-T-
T ss_pred cEEEEEecCCCEEEEEECCCCeE---------------------------EEEEcCCC------------CceeEEEec-
Confidence 444 4455689999999887653 34554432 222345675
Q ss_pred cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccC
Q 010801 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (501)
Q Consensus 124 ~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 203 (501)
+||+++++++.||.|.++|+.+++......
T Consensus 46 -~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~------------------------------------------------- 75 (369)
T PF02239_consen 46 -PDGRYLYVANRDGTVSVIDLATGKVVATIK------------------------------------------------- 75 (369)
T ss_dssp -T-SSEEEEEETTSEEEEEETTSSSEEEEEE-------------------------------------------------
T ss_pred -CCCCEEEEEcCCCeEEEEECCcccEEEEEe-------------------------------------------------
Confidence 899999999999999999999988665431
Q ss_pred ceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
-.....++++++||++++++ ..+.+.++|.+ ..+.++.+.............+.++..+|..+.
T Consensus 76 -------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 76 -------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp --------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred -------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCE
Confidence 12345779999999999886 79999999998 444555443221112224556788888888723
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCC
Q 010801 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDS 359 (501)
Q Consensus 282 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~ 359 (501)
+++..-+.+.|.+.|....+... .+.+.. ........|+|+++|++++. .+.|-++|.++ +
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~ 204 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLK--VTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-G 204 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEE--EEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-T
T ss_pred EEEEEccCCeEEEEEeccccccc--eeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-c
Confidence 44444455888888876653211 122222 34577889999999987763 38999999875 6
Q ss_pred CceeEeecccccccc-ccccCCCCCcceeeEEEEcC--CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 360 TPVATFKIHEHLRPK-LCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
+.+..+.....+-+. ...+.+.. ....|.. .+...++.-....+.+||..+. ...++++....+ .-+..+
T Consensus 205 k~v~~i~~g~~p~~~~~~~~php~-----~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 205 KLVALIDTGKKPHPGPGANFPHPG-----FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp EEEEEEE-SSSBEETTEEEEEETT-----TEEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE-SSSS---EE--
T ss_pred eEEEEeeccccccccccccccCCC-----cceEEeeccccceecccccCCccccchhhcC-eEEEEEECCCCc-ceeecC
Confidence 665554322111000 00000000 1122322 2233322222335567887766 344777766555 555666
Q ss_pred cCCccccCccceeeee----cccce-eeccccCCcc--cc-cccCCCeEEEEEccCCCEEEEee--CC-eEEEEeC
Q 010801 437 AAPRARRSSLSNLTRG----LYRQA-HENSSSGHHE--LS-YNLSSKLLHLAWHPTTNLIACAN--GN-SLFFHYA 501 (501)
Q Consensus 437 ~~~~~~~~~~~~l~~~----~~~~~-~iw~~~~~~~--~~-~~~~~~i~~~~~sp~~~~la~~~--~~-~~~i~~~ 501 (501)
| ++++ +... ...+. .+++...... .. ......+.++.|++||+.+-++. .+ .+.||++
T Consensus 278 P--~s~~-----vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 278 P--DSRY-----VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp T--T-SE-----EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred C--CCcc-----EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 6 5554 3333 22233 5554443211 11 12233589999999999765554 44 6888864
|
... |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=126.15 Aligned_cols=256 Identities=16% Similarity=0.199 Sum_probs=181.5
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
-..+.+.++.+|+.|+.|+..|.|..+|+.+++.. ..+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------------~Ei~v------------- 169 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------------FEINV------------- 169 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceee---------------------------eeeeh-------------
Confidence 34678999999999999999999999999988653 22222
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.+.|.++.|. .+.++|+++ ..+.+.|||-.+-++.++.
T Consensus 170 ~Etv~Dv~~L--Hneq~~AVA-QK~y~yvYD~~GtElHClk--------------------------------------- 207 (545)
T KOG1272|consen 170 METVRDVTFL--HNEQFFAVA-QKKYVYVYDNNGTELHCLK--------------------------------------- 207 (545)
T ss_pred hhhhhhhhhh--cchHHHHhh-hhceEEEecCCCcEEeehh---------------------------------------
Confidence 2679999997 666677666 4578999997765544432
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
. ...|..+.|-|..-+|+++ ..|.++.-|+.. ++.+.. +..-.+.+.
T Consensus 208 -----------------------~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa~-------~~t~~G~~~ 255 (545)
T KOG1272|consen 208 -----------------------R-HIRVARLEFLPYHFLLVAASEAGFLKYQDVST-GKLVAS-------IRTGAGRTD 255 (545)
T ss_pred -----------------------h-cCchhhhcccchhheeeecccCCceEEEeech-hhhhHH-------HHccCCccc
Confidence 1 2467788999988777887 899999999994 444432 444566778
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
.++-+|-+ ..+-+|..+|+|.+|.....+... ++ ..|.++|.++++.++|+|+++.+ |..+
T Consensus 256 vm~qNP~N-aVih~GhsnGtVSlWSP~skePLv---Ki--------------LcH~g~V~siAv~~~G~YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 256 VMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLV---KI--------------LCHRGPVSSIAVDRGGRYMATTGLDRKV 317 (545)
T ss_pred hhhcCCcc-ceEEEcCCCceEEecCCCCcchHH---HH--------------HhcCCCcceEEECCCCcEEeecccccce
Confidence 88889988 899999999999999988765442 22 23578999999999999999864 7999
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec-CCCC-cceEEEec--c
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH-GVGS-AGGITVEA--G 426 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~-~~~~-~~~~~~~~--~ 426 (501)
+|||+++ ...+.++... ... ..+++|..| +|| .+....|.||.- -.+. .....+-. .
T Consensus 318 kIWDlR~-~~ql~t~~tp-~~a---------------~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~ 378 (545)
T KOG1272|consen 318 KIWDLRN-FYQLHTYRTP-HPA---------------SNLSLSQKG-LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRC 378 (545)
T ss_pred eEeeecc-ccccceeecC-CCc---------------ccccccccc-cee-eecCCeeeeehhhhcCCCCCCcchhhhcc
Confidence 9999997 4444444431 111 468888665 333 344457899953 2211 11122222 2
Q ss_pred cCcccceeeccCC
Q 010801 427 KNENRKPILQAAP 439 (501)
Q Consensus 427 ~~~v~~~~~~~~~ 439 (501)
..+|..+.|.|-.
T Consensus 379 ~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 379 GGPVEDLRFCPYE 391 (545)
T ss_pred CcccccceeccHH
Confidence 3477777777753
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-15 Score=138.96 Aligned_cols=277 Identities=16% Similarity=0.187 Sum_probs=200.7
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
++.+.||. ..|+|+.|. ..|.++++|+.|..++||..+++.+....
T Consensus 183 ikrLlgH~------------naVyca~fD--rtg~~Iitgsdd~lvKiwS~et~~~lAs~-------------------- 228 (1113)
T KOG0644|consen 183 IKRLLGHR------------NAVYCAIFD--RTGRYIITGSDDRLVKIWSMETARCLASC-------------------- 228 (1113)
T ss_pred HHHHHhhh------------hheeeeeec--cccceEeecCccceeeeeeccchhhhccC--------------------
Confidence 34567777 889999995 78999999999999999998887755433
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.||.+.|+.++.+.+..+++++ .|..|++|.+. .+..
T Consensus 229 -----------------------------------------rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~p 266 (1113)
T KOG0644|consen 229 -----------------------------------------RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAP 266 (1113)
T ss_pred -----------------------------------------CCCccccchhccchhhhhhhhcccCceEEEEecC-CCch
Confidence 7999999999999888888888 99999999999 5555
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
+.+ +.+|++.|++++|+|-. +.+.||++++||.+-.. ..+.. .++... -...+.+
T Consensus 267 vsv-------LrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~p--rp~~~~-----~~~~~~s 321 (1113)
T KOG0644|consen 267 VSV-------LRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVP--RPLKFT-----EKDLVDS 321 (1113)
T ss_pred HHH-------HhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCC--CCCCcc-----cccceee
Confidence 554 78999999999999963 66889999999998211 11111 000000 0245777
Q ss_pred EEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEE
Q 010801 333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRI 410 (501)
Q Consensus 333 ~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~i 410 (501)
+.|..++.-++++++ +.-..|.... +..+.... .-+.++.+ ..+.+++-.+-.+.+
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~l---------------if~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQ-------LAWRSNLL---------------IFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred eeccccccccccccCCcccccchhhH-------hhhhccce---------------EEEeccccccccceeeeeeeEeee
Confidence 778888888888864 7777776542 11111110 01222222 246667778889999
Q ss_pred EecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCccc--ccccCCCeEEEEEccCCCE
Q 010801 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHEL--SYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~--~~~~~~~i~~~~~sp~~~~ 487 (501)
|++.+| .+.+.+.+|...+..+.+.|- +.++ .-+.+.||+ .||+..+.... .......+.+-+||+||..
T Consensus 380 wnl~~g-~l~H~l~ghsd~~yvLd~Hpf-n~ri-----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 380 WNLYTG-QLLHNLMGHSDEVYVLDVHPF-NPRI-----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTS 452 (1113)
T ss_pred eecccc-hhhhhhcccccceeeeeecCC-CcHh-----hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCce
Confidence 999999 555899999999999999996 6666 688899999 99955433222 1222456668899999998
Q ss_pred EEEee-CCeEEEEe
Q 010801 488 IACAN-GNSLFFHY 500 (501)
Q Consensus 488 la~~~-~~~~~i~~ 500 (501)
++..- .+.+||+.
T Consensus 453 ~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 453 IALSDDHGQLYILG 466 (1113)
T ss_pred EecCCCCCceEEec
Confidence 88766 45688764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-10 Score=105.14 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=106.5
Q ss_pred ccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecC------CCCCCCcccceEEEEEecCCCcEEEEEeC-
Q 010801 218 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPIYCNLLAYSSS- 288 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~- 288 (501)
......++++|++++|+++ .+|.|.++++...+......... +...........++.++|++ +++++...
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG 164 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLG 164 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecC
Confidence 3455678999999999988 79999999998655443332111 00111223456889999999 76666543
Q ss_pred CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCcee---
Q 010801 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA--- 363 (501)
Q Consensus 289 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~--- 363 (501)
...|.+|++............+.. .....-..++|+|+++++.+.. .+.|.++++......+.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 568999999776421111111111 0135678999999999987764 39999999983222222
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCC
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 415 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~ 415 (501)
.+....... ... .....++++|||++|.+.. .++.|.+|+++.
T Consensus 233 ~~~~~~~~~-------~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 233 TISTLPEGF-------TGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEESCETTS-------CSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred Eeeeccccc-------ccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 222111100 000 0126899999999887655 578899999943
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-13 Score=121.24 Aligned_cols=94 Identities=11% Similarity=0.198 Sum_probs=77.5
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
...|...+|+|||++||+. .||.++|||.. ....+.+ +...-+...|++|+||| ++|++|++|..|.||.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWS 360 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccceEEEEEcCCc-cEEEecCCcceEEEEE
Confidence 3488999999999999998 99999999999 3333332 33445678999999999 9999999999999999
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
+..++++ -.+ .+|..+|+.++|.|
T Consensus 361 f~erRVV------ARG-----------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVV------ARG-----------QGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEE------Eec-----------cccccceeeEeecc
Confidence 9887543 223 46889999999997
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-12 Score=120.84 Aligned_cols=215 Identities=13% Similarity=0.054 Sum_probs=132.3
Q ss_pred CCcccceEEEEecCCCCEEEEE-c---CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEE-EEEeCC
Q 010801 215 HAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSR 289 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~d 289 (501)
..+...+.+.+|+|||+.|+.. . +..|.+||+.+ ++... +..+...+...+|+|+| +.| ++.+.+
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~~~--------l~~~~g~~~~~~~SPDG-~~la~~~~~~ 267 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQREL--------VGNFPGMTFAPRFSPDG-RKVVMSLSQG 267 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcEEE--------eecCCCcccCcEECCCC-CEEEEEEecC
Confidence 3566788999999999988774 2 46899999984 43332 23344566788999999 655 455656
Q ss_pred Ce--EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC----CcEEEEEeeCCCCcee
Q 010801 290 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA 363 (501)
Q Consensus 290 g~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~----~~i~lwd~~~~~~~~~ 363 (501)
+. |.+||+.++... .+.. +........|+|||+.|+..++ ..|+++|+. +....
T Consensus 268 g~~~Iy~~d~~~~~~~-----~Lt~-------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~ 327 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT-----RLTD-------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPR 327 (435)
T ss_pred CCceEEEEECCCCceE-----EccC-------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeE
Confidence 55 677788776432 1221 1234567899999999886643 367777875 33344
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCCCcceEEEecccCcccceeeccCCc
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 440 (501)
.+....... ....|+|||++|+..+.+ ..|.+||+..+.. ..+.. ...+....|+| +
T Consensus 328 ~lt~~~~~~---------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~~~~~p~~sp--D 387 (435)
T PRK05137 328 RISFGGGRY---------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GFLVEGPTWAP--N 387 (435)
T ss_pred EeecCCCcc---------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CCCCCCCeECC--C
Confidence 444332221 468899999999876643 3688888865532 22322 23466778888 6
Q ss_pred cccCccceeeeecccc-----eeec--cccCCcccccccCCCeEEEEEccC
Q 010801 441 ARRSSLSNLTRGLYRQ-----AHEN--SSSGHHELSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 441 ~~~~~~~~l~~~~~~~-----~~iw--~~~~~~~~~~~~~~~i~~~~~sp~ 484 (501)
|+. ++....++ ..+| +.+............+...+|+|-
T Consensus 388 G~~-----i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 388 GRV-----IMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CCE-----EEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 766 55543322 2455 333222222223344666778774
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=123.15 Aligned_cols=190 Identities=14% Similarity=0.065 Sum_probs=131.5
Q ss_pred cCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc--
Q 010801 227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-- 303 (501)
Q Consensus 227 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~-- 303 (501)
.+.+--++.| .-|.|.+.|... ....+.+... ..-....|+++.|-|.++.+++++-.+|.+.+||.......
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne~---r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEE---RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhhc---ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 4567778888 889999988763 3322221111 11123679999999988788999999999999987331100
Q ss_pred --cc---c---cceeecc-cccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccc
Q 010801 304 --DH---S---ARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 304 --~~---~---~~~~~~~-~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
.. . ..+.... .....+...+.--.+.|...+|+|||++||+.+ ||.+||||..+ .+++..++.--+..
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL- 335 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL- 335 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence 00 0 0011110 000011111122245899999999999999875 69999999986 66665555433332
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
.+++|||||+||++|++|..|.||.+... .++..=++|+++|..++|-|
T Consensus 336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --------------EEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 69999999999999999999999999877 56688899999999999985
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-12 Score=108.97 Aligned_cols=117 Identities=14% Similarity=0.292 Sum_probs=87.2
Q ss_pred cccceEEEEecCCCCEEEE--E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC---CC
Q 010801 217 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG 290 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg 290 (501)
..+.|.+++|+|+|+.|++ | .++.|.+||++ ...... + +...+..+.|+|+| ++|++++. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence 3456999999999998765 5 67899999997 333322 2 24567889999999 99988864 47
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-------CCcEEEEEeeCCCCcee
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA 363 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-------~~~i~lwd~~~~~~~~~ 363 (501)
.|.+||.++.+.. ...+. ..++.++|+|||++|+++. |+.++||+.. ++.+.
T Consensus 126 ~l~~wd~~~~~~i----~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~ 184 (194)
T PF08662_consen 126 DLEFWDVRKKKKI----STFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY 184 (194)
T ss_pred EEEEEECCCCEEe----ecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence 7999999976543 22221 3578999999999999762 5889999985 66665
Q ss_pred Eee
Q 010801 364 TFK 366 (501)
Q Consensus 364 ~~~ 366 (501)
...
T Consensus 185 ~~~ 187 (194)
T PF08662_consen 185 KKP 187 (194)
T ss_pred ecc
Confidence 543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-10 Score=99.28 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=114.2
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc----------eEEEEEecCCCcEEEEEe
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV----------ITSAEFHPIYCNLLAYSS 287 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------v~~v~~~p~~~~~l~~~~ 287 (501)
+-+.++++++|++++++ ..|.|.++-++..+.....+. +..|.+. +....+.|++ ++|++.+
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~D 163 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPD 163 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeecCCCCCCccccCCccceeeeCCCC-CEEEEee
Confidence 33778999999999998 789999999975554443322 1122222 7888999999 8888776
Q ss_pred C-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeE
Q 010801 288 S-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 288 ~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~ 364 (501)
. --.|.+|++..+.+.......+.. ...-..|.|+|++++...-. +++|-+|........+..
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred cCCceEEEEEcccCccccccccccCC--------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 5 357999999987655322222222 35678999999999887664 499999999753344444
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 416 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~ 416 (501)
++.+..... ++..... .-.+..++||++|.+... ...|.+|.+...
T Consensus 230 lQ~i~tlP~---dF~g~~~---~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 230 LQTIDTLPE---DFTGTNW---AAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred eeeeccCcc---ccCCCCc---eeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 443322110 0111111 157899999999987654 457888888754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-11 Score=111.68 Aligned_cols=269 Identities=12% Similarity=0.145 Sum_probs=155.6
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccc
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (501)
-..+.|+|||+++++++.||.|.++|+.+++. +.+++.. .
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---------------------------v~~i~~G-------------~ 78 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV---------------------------VATIKVG-------------G 78 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE---------------------------EEEEE-S-------------S
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccE---------------------------EEEEecC-------------C
Confidence 34578999999999999999999999997764 2444432 3
Q ss_pred ceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 115 KINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
....++++ +||++++++. .++.+.++|.++.+..+........
T Consensus 79 ~~~~i~~s--~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~---------------------------------- 122 (369)
T PF02239_consen 79 NPRGIAVS--PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP---------------------------------- 122 (369)
T ss_dssp EEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----------------------------------
T ss_pred CcceEEEc--CCCCEEEEEecCCCceeEeccccccceeeccccccc----------------------------------
Confidence 35778887 8999998876 7899999999998766544211000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
.......+..+..+|....++.+ +.+.|.+-|...... +... .........
T Consensus 123 --------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~------~i~~g~~~~ 175 (369)
T PF02239_consen 123 --------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKVT------TIKVGRFPH 175 (369)
T ss_dssp --------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EEEE------EEE--TTEE
T ss_pred --------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-ccee------eeccccccc
Confidence 01234567778788888866665 568898889774332 2211 111234567
Q ss_pred EEEEecCCCcEEEE-EeCCCeEEEEEccCCcccccc-----cc--------------eeec-cc---------ccCC---
Q 010801 272 SAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHS-----AR--------------ILRD-AA---------ESHG--- 318 (501)
Q Consensus 272 ~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~-----~~--------------~~~~-~~---------~~~~--- 318 (501)
...|+|++ ++++. ...++.|-++|..++++.... .. .|.. |. ..+.
T Consensus 176 D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 176 DGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred ccccCccc-ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 88999999 76655 455778999998886543100 00 0000 00 0000
Q ss_pred ------CcceeeecccceeEEEEeeCCCEEEEE----cC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 319 ------SKSFFTEIIASISDIKFANDGQHLLSR----DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 319 ------~~~~~~~h~~~i~~~~~sp~~~~l~~~----~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
....+.....+ .-+..+|+++++.+. .+ +.|.++|.++ .+.+..+....... +
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~--------------~ 318 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKR--------------V 318 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT----------------E
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCc--------------E
Confidence 00011222233 567789999999876 34 8999999986 55556665333311 1
Q ss_pred eEEEEcCCCcEEEEEeC--CCeEEEEecCCCCcceEEEe
Q 010801 388 FECSVSGDGLHFATGSY--SNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~ 424 (501)
..+.|++||+.+..... ++.|.+||..+.+.+ ..++
T Consensus 319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~-~~i~ 356 (369)
T PF02239_consen 319 VHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK-KRIP 356 (369)
T ss_dssp EEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE-EEEE
T ss_pred eccEECCCCCEEEEEEecCCCEEEEEECCCcEEE-EEEE
Confidence 58999999997654433 447999999988444 4443
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-10 Score=105.61 Aligned_cols=271 Identities=12% Similarity=0.137 Sum_probs=160.3
Q ss_pred ccceEEEEEccCCCEEEEEec----CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
....+.++++|++++|.+..+ +|.|..|++....- ....+.......
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------ 86 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------ 86 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence 456788999999999998876 57899999885311 112222222111
Q ss_pred cccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccc-cceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
.....++++ +++++|+++. .+|.|.++++.. +.+.....
T Consensus 87 ------~~p~~i~~~--~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~------------------------------- 127 (345)
T PF10282_consen 87 ------SSPCHIAVD--PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ------------------------------- 127 (345)
T ss_dssp ------SCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-------------------------------
T ss_pred ------CCcEEEEEe--cCCCEEEEEEccCCeEEEEEccCCcccceeee-------------------------------
Confidence 334567776 8899999887 689999999986 44333210
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeee-eecCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI-VDMKPSN 262 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~ 262 (501)
++... ...... .........++.++|+++++++. ....|.+|+++.....+.. -.+ .
T Consensus 128 ------------~~~~~----g~g~~~-~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~---~ 187 (345)
T PF10282_consen 128 ------------TVRHE----GSGPNP-DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI---K 187 (345)
T ss_dssp ------------EEESE----EEESST-TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE---E
T ss_pred ------------ecccC----CCCCcc-cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc---c
Confidence 00000 000000 01234556789999999988876 5679999999854422211 101 1
Q ss_pred CCCcccceEEEEEecCCCcEEEE-EeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
+ ......+.++|+|++ +++++ ...++.|.++++................+.. +.+ ......++++|||++
T Consensus 188 ~-~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~------~~~-~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 188 V-PPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG------FTG-ENAPAEIAISPDGRF 258 (345)
T ss_dssp C-STTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT------SCS-SSSEEEEEE-TTSSE
T ss_pred c-ccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc------ccc-cCCceeEEEecCCCE
Confidence 2 233456999999999 65554 4558899999998322111111111110000 000 136789999999999
Q ss_pred EEEEc--CCcEEEEEeeCCCCceeE---eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecC
Q 010801 342 LLSRD--YMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (501)
Q Consensus 342 l~~~~--~~~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 414 (501)
|.++. .+.|.+|++......+.. +...... + +.++++|+|++|+++. .++.|.+|+++
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-P--------------r~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-P--------------RHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-E--------------EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-c--------------cEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 98764 489999999532223322 2221111 1 6899999999999877 46899999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-10 Score=99.20 Aligned_cols=290 Identities=11% Similarity=0.157 Sum_probs=180.6
Q ss_pred hhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEec---CCcEEEEEecC--CcCCCCccchhhhhhhccccccCC
Q 010801 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTSTS 87 (501)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 87 (501)
.|++...-++....+.+.+.+.++-|+|+|+++.|.++-. +|.|..|.++. |+..
T Consensus 20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-------------------- 79 (346)
T COG2706 20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-------------------- 79 (346)
T ss_pred EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------------------
Confidence 4776654556666666778899999999999999988764 47788888774 3321
Q ss_pred CCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccc-cceeeeeccCCCccccccc
Q 010801 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSEN 165 (501)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~ 165 (501)
..-...+.+ .+-..|+++ +++++++++. .-|.|.++-++. |.+..........
T Consensus 80 ---~ln~~~~~g--------------~~p~yvsvd--~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~------ 134 (346)
T COG2706 80 ---FLNRQTLPG--------------SPPCYVSVD--EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT------ 134 (346)
T ss_pred ---EeeccccCC--------------CCCeEEEEC--CCCCEEEEEEccCceEEEEEcccCCccccceeeeecC------
Confidence 001111222 224778886 8899999987 568999998865 4432221000000
Q ss_pred ccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEE
Q 010801 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINL 243 (501)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~i 243 (501)
... ... ......+.+..+.|+++++++. .-..|.+
T Consensus 135 ------------------------------------g~~--p~~-----rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 135 ------------------------------------GSG--PHE-----RQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred ------------------------------------CCC--CCc-----cccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 000 000 1112236678899999999886 5568999
Q ss_pred EECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
|++. .+..... .+..+ ......+.+.|+|++ ++.++.++ +++|.+|...........++.... -|. .
T Consensus 172 y~~~-dg~L~~~---~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t---lP~---d 239 (346)
T COG2706 172 YDLD-DGKLTPA---DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT---LPE---D 239 (346)
T ss_pred EEcc-cCccccc---ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeecc---Ccc---c
Confidence 9999 4432221 11123 334456999999999 77666555 999999998874211111111111 110 0
Q ss_pred eeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeecccc-ccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
|.+ ..+..++..+|||++|.++. ...|-+|.+...+..+........ .. .. +.+.|++.|++|
T Consensus 240 F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~----------~P---R~F~i~~~g~~L 305 (346)
T COG2706 240 FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ----------FP---RDFNINPSGRFL 305 (346)
T ss_pred cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc----------CC---ccceeCCCCCEE
Confidence 111 35788999999999999874 378999998764444433322111 11 00 589999999999
Q ss_pred EEEeCC-CeEEEEecCCC
Q 010801 400 ATGSYS-NLLRIFSHGVG 416 (501)
Q Consensus 400 ~s~~~d-g~i~iwd~~~~ 416 (501)
+++..+ ..|.+|..+..
T Consensus 306 iaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 306 IAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEccCCCcEEEEEEcCC
Confidence 988874 56899987643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-12 Score=119.58 Aligned_cols=256 Identities=13% Similarity=0.170 Sum_probs=170.0
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
......|++|+....|+|+|+.||.++|-.+.+.... +... .+........-+++.||.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d---------~~~~---glaa~snLsmNQtLeGH~--------- 71 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD---------LNKS---GLAAASNLSMNQTLEGHN--------- 71 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCc---------cccc---ccccccccchhhhhccCc---------
Confidence 4567899999999999999999999999988754321 0000 011222344557789999
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|.-+.|+ .+.+.|-++..+|.|.+|-+..+........
T Consensus 72 ---~sV~vvTWN--e~~QKLTtSDt~GlIiVWmlykgsW~EEMiN----------------------------------- 111 (1189)
T KOG2041|consen 72 ---ASVMVVTWN--ENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN----------------------------------- 111 (1189)
T ss_pred ---ceEEEEEec--cccccccccCCCceEEEEeeecccHHHHHhh-----------------------------------
Confidence 999999997 6677888888999999999887763322100
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
....+.|.+++|+.||..++.. .||.|.+=.++ +.+.... .+.+ ..
T Consensus 112 ------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK------eLkg--~~ 158 (1189)
T KOG2041|consen 112 ------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK------ELKG--QL 158 (1189)
T ss_pred ------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch------hcch--he
Confidence 3456788999999999999999 99999888777 4444321 1222 22
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc-ceeecccccCCCcceeeecccceeEEEEe--------eCCC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFA--------NDGQ 340 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--------p~~~ 340 (501)
...+.|++|. +.++.+-.+|.+++||.+..=...-+. ..... ...+......|..+.|. ||..
T Consensus 159 l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------tg~~s~~~~kia~i~w~~g~~~~v~pdrP 230 (1189)
T KOG2041|consen 159 LAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNG-------TGIFSNFPTKIAEIEWNTGPYQPVPPDRP 230 (1189)
T ss_pred ccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEee-------eeeecCCCccccceeeccCccccCCCCCC
Confidence 3578899998 888888899999999976531110000 00111 00011112234445543 4667
Q ss_pred EEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 341 ~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
.|+.+-+ |.+.+..-.++..++-.-.+- . +..+.|+++|..||.++.+
T Consensus 231 ~lavcy~nGr~QiMR~eND~~Pvv~dtgm-~----------------~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 231 RLAVCYANGRMQIMRSENDPEPVVVDTGM-K----------------IVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred EEEEEEcCceehhhhhcCCCCCeEEeccc-E----------------eecceecCCCcEEEEccCc
Confidence 7887744 888777655434443332221 1 1589999999999998875
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-12 Score=109.55 Aligned_cols=281 Identities=13% Similarity=0.145 Sum_probs=192.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|..++|.-++....++..+.|..+..+.+....+...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----------------------------------------- 94 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----------------------------------------- 94 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccc-----------------------------------------
Confidence 668888887445555566665777777777766543321
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
+|+.... ......|..++.. ++ .|++| .+|.+.+|....+...-. +...+. ....+..
T Consensus 95 ----~~~~~~~----------~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss----~l~~la-~g~g~~~ 153 (412)
T KOG3881|consen 95 ----LDDAKTV----------SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSS----KLIKLA-TGPGLYD 153 (412)
T ss_pred ----ccccccc----------ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccc----cceeee-cCCceee
Confidence 1222210 2334556555543 44 67777 999999999883321100 000111 2244566
Q ss_pred EEEecCCCcEEEEEeCC--CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC--CCEEEEEcC-
Q 010801 273 AEFHPIYCNLLAYSSSR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY- 347 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~~~~~- 347 (501)
+.-++..+.++++|+.. ..+.+||+.+.+ ++|.. .+.+...--+ .-+-+++++.|-|. ...||+++-
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~------qiw~a-KNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~ 225 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSK------QIWSA-KNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRY 225 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccce------eeeec-cCCCCccccc-eeeeeeccceecCCCCCceEEEEecc
Confidence 66667665678889998 889999998874 66766 3322211100 11357889999987 788888875
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.+++||.+...+|+..+...+.++ +++...|.+++|++|..-|.+..||+..++.....+++-.
T Consensus 226 hqvR~YDt~~qRRPV~~fd~~E~~i---------------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 226 HQVRLYDTRHQRRPVAQFDFLENPI---------------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred eeEEEecCcccCcceeEeccccCcc---------------eeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 9999999998888999988777665 7899999999999999999999999999977777799999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eeccccCCccc-ccccCCCeEEEEEccCCC
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHEL-SYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~-~~~~~~~i~~~~~sp~~~ 486 (501)
+.++.+...| ..++ ++++|-|.- +|++....... ..-..+.++.+-+.++-+
T Consensus 291 Gsirsih~hp--~~~~-----las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 291 GSIRSIHCHP--THPV-----LASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred CCcceEEEcC--CCce-----EEeeccceeEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence 9999999998 5566 999999999 99966542211 122334566666655543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-11 Score=114.83 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=121.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |+|++|+.++.+ ..|++||+.+++.....
T Consensus 190 ~~~~~p~~S--pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------------------------------------- 230 (417)
T TIGR02800 190 EPILSPAWS--PDGQKLAYVSFESGKPEIYVQDLATGQREKVA------------------------------------- 230 (417)
T ss_pred CceecccCC--CCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-------------------------------------
Confidence 557888897 899999887643 47999999877543321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cC--CeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+...+.+++|+|||+.|+.. .+ ..|++||+.. +.... +..+
T Consensus 231 -------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~-~~~~~--------l~~~ 276 (417)
T TIGR02800 231 -------------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG-KQLTR--------LTNG 276 (417)
T ss_pred -------------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC-CCEEE--------CCCC
Confidence 223345568899999977653 33 3688889883 33332 2233
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
........|+|+| +.|+..+. ++ .|.++|+.+++.. .+.. +......+.|+|+|++|+
T Consensus 277 ~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 277 PGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR-----RLTF-------------RGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE-----Eeec-------------CCCCccCeEECCCCCEEE
Confidence 3444567899999 77766554 33 5777777665321 1111 124567789999999988
Q ss_pred EEcC-C---cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---eEEEEecC
Q 010801 344 SRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHG 414 (501)
Q Consensus 344 ~~~~-~---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd~~ 414 (501)
.+.. + .|.+||+.+ + ....+...... ....|+|||++|+..+.++ .+++.+..
T Consensus 338 ~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDG-G-GERVLTDTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEccCCceEEEEEeCCC-C-CeEEccCCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7642 2 688888764 3 33333322111 3578999999888777654 35555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=112.47 Aligned_cols=211 Identities=15% Similarity=0.192 Sum_probs=125.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |||+.|+..+.+ ..|.+||+.+++...+.
T Consensus 218 ~~~~~p~wS--PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt------------------------------------- 258 (448)
T PRK04792 218 EPLMSPAWS--PDGRKLAYVSFENRKAEIFVQDIYTQVREKVT------------------------------------- 258 (448)
T ss_pred CcccCceEC--CCCCEEEEEEecCCCcEEEEEECCCCCeEEec-------------------------------------
Confidence 668889998 899998877532 25788888776543321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCe--EEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.........+|+|||+.|+.. .++. |+++|+. +++... +..+
T Consensus 259 -------------------------~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~--------lt~~ 304 (448)
T PRK04792 259 -------------------------SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTR--------ITRH 304 (448)
T ss_pred -------------------------CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEE--------CccC
Confidence 011122357899999988753 5664 7777877 333332 3334
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccce-eecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
.......+|+|+| +.|+..+. ++ .|.++|+.+++.. ++ +.. ......+|+|||++|
T Consensus 305 ~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~~~----~Lt~~g---------------~~~~~~~~SpDG~~l 364 (448)
T PRK04792 305 RAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGKVS----RLTFEG---------------EQNLGGSITPDGRSM 364 (448)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EEecCC---------------CCCcCeeECCCCCEE
Confidence 4455778999999 76665543 44 4666677665432 11 111 223456899999998
Q ss_pred EEEc--CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CC--eEEEEecCC
Q 010801 343 LSRD--YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN--LLRIFSHGV 415 (501)
Q Consensus 343 ~~~~--~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~ 415 (501)
+..+ .+ .|.++|+.+ ++ ...+...... ....|+|||++|+..+. +| .+++++.+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~~d----------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~- 425 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLET-GA-MQVLTSTRLD----------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID- 425 (448)
T ss_pred EEEEecCCceEEEEEECCC-CC-eEEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 8653 24 455566653 33 3333322111 24689999998876554 33 36677764
Q ss_pred CCcceEEEecccCcccceeecc
Q 010801 416 GSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
+. ....+..+...+...+|+|
T Consensus 426 G~-~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GR-FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CC-ceEECcCCCCCcCCCccCC
Confidence 32 3345555555556666665
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-11 Score=100.64 Aligned_cols=233 Identities=12% Similarity=0.091 Sum_probs=154.6
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCC------Ce
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR------GF 291 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~d------g~ 291 (501)
....+++|+.|...+++|.|.-.+||+.+.-++.... ....-.-.+..+-|.. ++|+ +|+.+ ..
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r------~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNk 76 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASR------QFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNK 76 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhh------ccccCchhhhhHhhhh---ceEEEecCCCCCCCCCce
Confidence 3455699999999999997778999998832221110 0111112223333332 3343 34332 57
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
|.|||=...+.. ..++- ..+|.++.+.+ ..|++.-.+.|+||....+-+.++.+.....+
T Consensus 77 viIWDD~k~~~i----~el~f--------------~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 77 VIIWDDLKERCI----IELSF--------------NSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred EEEEecccCcEE----EEEEe--------------ccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCC
Confidence 999993332211 22222 46899999885 46777777999999997656777777655543
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEE-EeCCCeEEEEecCCCCc-ceEEEecccCcccceeeccCCccccCcccee
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSA-GGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
.. + .+++-..+..+||. |-.-|.|.|-|+...+. ....+++|.+.|.+++... +|.+ +
T Consensus 137 kG-l------------C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~--~Gt~-----v 196 (346)
T KOG2111|consen 137 KG-L------------CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL--QGTL-----V 196 (346)
T ss_pred Cc-e------------EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC--CccE-----E
Confidence 21 1 12333334556665 44569999999986644 3589999999999999998 8888 9
Q ss_pred eeecccce--eeccc--cCCcccccc--cCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 450 TRGLYRQA--HENSS--SGHHELSYN--LSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 450 ~~~~~~~~--~iw~~--~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
|++|..|+ +||++ ++.+.+... -...|.+|+|||+..+||++++.+ +.||.
T Consensus 197 ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 99999999 99943 344444332 235899999999999999999765 88875
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-10 Score=106.66 Aligned_cols=284 Identities=15% Similarity=0.174 Sum_probs=180.0
Q ss_pred cccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+++...-+.|..+ |||+++++. ...-.|++||+.+-.++.....
T Consensus 48 fe~p~ast~ik~s--~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--------------------------------- 92 (703)
T KOG2321|consen 48 FEMPTASTRIKVS--PDGQYLLATGTYKPQIKVYDLANLSLKFERHL--------------------------------- 92 (703)
T ss_pred cCCccccceeEec--CCCcEEEEecccCCceEEEEcccceeeeeecc---------------------------------
Confidence 3344777888887 899987654 5788999999987654432211
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
....|.-.-.+.|-..++.= .|.+|.+-.-- +.-..+ .++
T Consensus 93 ----------------------------Dae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy~~------RIP--- 133 (703)
T KOG2321|consen 93 ----------------------------DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHYRT------RIP--- 133 (703)
T ss_pred ----------------------------cccceeEEEeccchhhheEeecCceeeehhhc--Ceeeee------ecC---
Confidence 01122222234343333333 56666654322 221111 011
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..-+.++++.-.+.+++ ++....|.-+++..|... ..+.. ..+.++.|..++-..+|++|+
T Consensus 134 ~~GRDm~y~~~scDly~-~gsg~evYRlNLEqGrfL----~P~~~-------------~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFL----NPFET-------------DSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred cCCccccccCCCccEEE-eecCcceEEEEccccccc----ccccc-------------ccccceeeeecCccceEEeccc
Confidence 12245666644424444 445557888899988644 22322 136799999999999999997
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
+|.|..||.+. ...+.++..... +.... ..+....|+++.|+-+|-.+++|+.+|.|.|||+.+.+.+...-.+-
T Consensus 196 ~g~VEfwDpR~-ksrv~~l~~~~~-v~s~p---g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 196 DGVVEFWDPRD-KSRVGTLDAASS-VNSHP---GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred CceEEEecchh-hhhheeeecccc-cCCCc---cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence 59999999986 555555554333 11000 11122234899999999999999999999999999887665555555
Q ss_pred cCcccceeeccCCccccCccceeeeecccceeec-cccCCcccccccCCCeEEEEEccCCCEEEEeeCCe
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 495 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw-~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~ 495 (501)
.-++..+.|.+...... +++....-.+|| ...+......+.+..++.+++-|++.++.+|.++.
T Consensus 271 e~pi~~l~~~~~~~q~~-----v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNK-----VVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred ccceeeecccccCCCce-----EEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 66788888877533333 555444333999 33344455667777899999999999999998665
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-11 Score=113.82 Aligned_cols=204 Identities=15% Similarity=0.163 Sum_probs=124.9
Q ss_pred ccccceEEEEEccCCCEEEEEecC---CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+.+.+...+|||||+.||..+.+ ..|.+|++.+++.. .+....
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~----------------------------~l~~~~----- 242 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE----------------------------QITNFE----- 242 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----------------------------EccCCC-----
Confidence 567789999999999999876533 36888999877531 122122
Q ss_pred ccccccccceeEEEEeecCCCCEEEEe-eCCC--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+.+...+|+ |+|+.|+.. +.++ .|.+||+.+++...+
T Consensus 243 -------g~~~~~~~S--pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------- 282 (430)
T PRK00178 243 -------GLNGAPAWS--PDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------------------------------- 282 (430)
T ss_pred -------CCcCCeEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEEc-------------------------------
Confidence 334568897 788888754 4444 577778877664332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+........|+|||+.++.. .++ .|+++++.. ++...+.
T Consensus 283 -------------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~~~~lt--- 327 (430)
T PRK00178 283 -------------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GRAERVT--- 327 (430)
T ss_pred -------------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CCEEEee---
Confidence 1222334557899999987764 444 577777763 3333221
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCC-C--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
..+ .......|+|+| +.|+..+.+ + .|.+||+.+++. +.+.. ........|+
T Consensus 328 ---~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~--------------~~~~~~p~~s 382 (430)
T PRK00178 328 ---FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD--------------TSLDESPSVA 382 (430)
T ss_pred ---cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC--------------CCCCCCceEC
Confidence 111 223456899999 777766543 3 578889887643 22221 0112345899
Q ss_pred eCCCEEEEEc-C-C--cEEEEEeeCCCCceeEeecc
Q 010801 337 NDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 337 p~~~~l~~~~-~-~--~i~lwd~~~~~~~~~~~~~~ 368 (501)
|||+.++..+ + + .|+++++. +.....+..+
T Consensus 383 pdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~ 416 (430)
T PRK00178 383 PNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA 416 (430)
T ss_pred CCCCEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence 9999988653 2 3 45666653 5555555433
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-10 Score=109.28 Aligned_cols=212 Identities=16% Similarity=0.152 Sum_probs=129.2
Q ss_pred cceeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+...+|+ |+|+.|+..+.+ ..|.+|++.+++...+.
T Consensus 199 ~~~~~p~wS--pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------------------------------------- 239 (430)
T PRK00178 199 EPILSPRWS--PDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------------------------------------- 239 (430)
T ss_pred CceeeeeEC--CCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------------------------------
Confidence 668889998 789998877643 36888898877644321
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.....+...+|+|||+.|+.. .++ .|++||+.+ +.... +..+
T Consensus 240 -------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~~~~--------lt~~ 285 (430)
T PRK00178 240 -------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQLSR--------VTNH 285 (430)
T ss_pred -------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CCeEE--------cccC
Confidence 111233458899999988753 444 688889883 33332 2334
Q ss_pred ccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
........|+|+| +.|+..+. +| .|.++|+.+++.. ++... ........|+|||++|+
T Consensus 286 ~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~~----~lt~~--------------~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRAE----RVTFV--------------GNYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EeecC--------------CCCccceEECCCCCEEE
Confidence 4445677899999 76665553 33 5667777665432 11111 12234578999999998
Q ss_pred EEc--C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCC
Q 010801 344 SRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG 416 (501)
Q Consensus 344 ~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~ 416 (501)
... + ..|.++|+.+ ++ ...+... ... ....|+|||++|+..+.+ ..|.++++...
T Consensus 347 ~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~~---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQR-GS-VRILTDT-SLD---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEccCCceEEEEEECCC-CC-EEEccCC-CCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 653 2 3578888874 33 3333221 111 246899999998876653 34666676533
Q ss_pred CcceEEEecccCcccceeecc
Q 010801 417 SAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~ 437 (501)
....+..+...+...+++|
T Consensus 409 --~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 409 --VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred --ceEECcCCCCCcCCCccCC
Confidence 2234444445555556655
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-11 Score=113.67 Aligned_cols=206 Identities=14% Similarity=0.124 Sum_probs=122.7
Q ss_pred ccccceEEEEEccCCCEEEEEec-CC--cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDR-GG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+...+.+.+|||||+.||..+. ++ .|.+||+.+++.. .+..+.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------------------~lt~~~-------- 261 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------------------KVTSFP-------- 261 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EecCCC--------
Confidence 44667889999999999987653 33 5888888776431 112222
Q ss_pred ccccccccceeEEEEeecCCCCEEEEe-eCCCe--EEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~--i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+.....+|+ |||+.|+.. +.++. |.++|+.+++...+
T Consensus 262 -------g~~~~~~wS--PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------------------------------- 301 (448)
T PRK04792 262 -------GINGAPRFS--PDGKKLALVLSKDGQPEIYVVDIATKALTRI------------------------------- 301 (448)
T ss_pred -------CCcCCeeEC--CCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-------------------------------
Confidence 223467897 788888754 55564 66677776654332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+.......+|+|||+.|+.. .++ .|.++|+. +++...+.
T Consensus 302 -------------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt--- 346 (448)
T PRK04792 302 -------------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLT--- 346 (448)
T ss_pred -------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEe---
Confidence 1223344567899999988764 444 45556666 33333221
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
..+. .....+|+|+| +.|+..+. ++ .|.++|+.++... .+.. ........|+
T Consensus 347 ---~~g~--~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-----~lt~--------------~~~d~~ps~s 401 (448)
T PRK04792 347 ---FEGE--QNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-----VLTS--------------TRLDESPSVA 401 (448)
T ss_pred ---cCCC--CCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-----EccC--------------CCCCCCceEC
Confidence 1222 22456899999 77766554 44 4555677765431 1211 0112234799
Q ss_pred eCCCEEEEEc--CC--cEEEEEeeCCCCceeEeecccc
Q 010801 337 NDGQHLLSRD--YM--NLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 337 p~~~~l~~~~--~~--~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
|||+.|+... ++ .+++++.. ++....+..+..
T Consensus 402 pdG~~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g 437 (448)
T PRK04792 402 PNGTMVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG 437 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence 9999887643 23 46666763 666666655433
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-10 Score=110.95 Aligned_cols=187 Identities=15% Similarity=0.106 Sum_probs=117.0
Q ss_pred CcccceEEEEecCCCCEEEEE-cC---CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCC
Q 010801 216 AHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG 290 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg 290 (501)
.+...+.+.+|+|||+.|+.+ .+ ..|++||+.++. ... +..+...+.+++|+|+| +.|+ +.+.++
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~--------~~~~~~~~~~~~~spDg-~~l~~~~~~~~ 256 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REK--------VASFPGMNGAPAFSPDG-SKLAVSLSKDG 256 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEE--------eecCCCCccceEECCCC-CEEEEEECCCC
Confidence 344567788999999999876 32 579999998433 222 22234456678999999 6555 444444
Q ss_pred --eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--C--cEEEEEeeCCCCceeE
Q 010801 291 --FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVAT 364 (501)
Q Consensus 291 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~--~i~lwd~~~~~~~~~~ 364 (501)
.|.+||+.++... + +.. +........|+|||+.|+..++ + .|+++|+.. ++ ...
T Consensus 257 ~~~i~~~d~~~~~~~----~-l~~-------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~ 316 (417)
T TIGR02800 257 NPDIYVMDLDGKQLT----R-LTN-------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRR 316 (417)
T ss_pred CccEEEEECCCCCEE----E-CCC-------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 5888888776432 1 111 1223456789999998876543 3 577777753 33 334
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---eEEEEecCCCCcceEEEecccCcccceeeccCCcc
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 441 (501)
+..+.... ....|+|+|++|+..+.++ .|.+||+.++.. ..+... .......++| ++
T Consensus 317 l~~~~~~~---------------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~-~~~~~p~~sp--dg 376 (417)
T TIGR02800 317 LTFRGGYN---------------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTDT-GLDESPSFAP--NG 376 (417)
T ss_pred eecCCCCc---------------cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccCC-CCCCCceECC--CC
Confidence 43232221 4689999999999888775 788999887532 223222 2234556777 66
Q ss_pred ccCccceeeeecccce
Q 010801 442 RRSSLSNLTRGLYRQA 457 (501)
Q Consensus 442 ~~~~~~~l~~~~~~~~ 457 (501)
+. |+....++.
T Consensus 377 ~~-----l~~~~~~~~ 387 (417)
T TIGR02800 377 RM-----ILYATTRGG 387 (417)
T ss_pred CE-----EEEEEeCCC
Confidence 65 566555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-10 Score=102.40 Aligned_cols=294 Identities=11% Similarity=0.119 Sum_probs=170.2
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.-++..++|||.|.+|++.... -|.+|.......+ ..+..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l---------------------------~~~~~------------ 71 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKL---------------------------VRFRH------------ 71 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchhhe---------------------------eeeec------------
Confidence 5689999999999999987655 5889986654321 22322
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCC---------------eEEEEeccccceeeeeccCCCccccc-ccccccccCccc
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDK---------------TIKLWKVRDQKVKKIKEMDHFPFVSS-ENTLLAEKNFMN 175 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~---------------~i~lw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 175 (501)
..|..+.|+ |++++|.+-+... .+.+||+.++.+...........+-- +.+...+.....
T Consensus 72 --~~V~~~~fS--P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 72 --PDVKYLDFS--PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred --CCceecccC--cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh
Confidence 448888897 7888988855433 48999999998776654433221100 000000000000
Q ss_pred cCC---------CCCCccc------ccc----eeccC---cceEEEeccCceeeeeeEeecCCcccce----------EE
Q 010801 176 EHN---------PPSFAHG------YHL----EWTEN---MATKIANVGNSVHARCQKVYPHAHDFNI----------NS 223 (501)
Q Consensus 176 ~~~---------~~~~~~~------~~~----~~~~~---~~i~~w~~~~~~~~~~~~~~~~~~~~~v----------~~ 223 (501)
-.. ..+.... +.+ .+++. ..+..|-.+........+.+.......+ ..
T Consensus 148 Rvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 148 RVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred hhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 000 0000000 011 11111 1356666665444333333211111111 14
Q ss_pred EEecCCCCEEEEE--c----------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE--eCC
Q 010801 224 ISNNSDCETFVSA--D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SSR 289 (501)
Q Consensus 224 l~~~~~~~~l~~~--~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~--~~d 289 (501)
+.|.+.|+++++= . ...+.|+++. +..+.. ..+..++|...+|.|.+ +.+++. -.+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~~i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~p 297 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ERSIPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYMP 297 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeec--ccccce-------eccccccceeeeecccC-CceeEEecccc
Confidence 5666777766541 1 1345566655 222211 11457899999999998 655554 458
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C--CcEEEEEeeCCCCceeEe
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~--~~i~lwd~~~~~~~~~~~ 365 (501)
-.+.++|++.+ +. ..+. ...=+.+.|+|.+++++.++ . |.+-+||.......+..+
T Consensus 298 a~~s~~~lr~N-l~----~~~P---------------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~ 357 (561)
T COG5354 298 ASVSVFDLRGN-LR----FYFP---------------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF 357 (561)
T ss_pred cceeecccccc-eE----EecC---------------CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe
Confidence 88999999876 21 1111 23457788999999988753 2 899999987423334455
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC------CCeEEEEecCCC
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVG 416 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~ 416 (501)
.+... .-+.|+||++++.+... |..|.|||+...
T Consensus 358 ~~~n~-----------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 358 NGLNT-----------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ecCCc-----------------eEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 55443 34789999999886643 788999998744
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-09 Score=102.58 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=100.2
Q ss_pred eEEEEecCCCCEEEEE--cCC----eEEEEECCCC--CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-CCCe
Q 010801 221 INSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGF 291 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~ 291 (501)
....+|+|||+.|+.. .+| .+.+|++... +....+ ...........+|+||| +.|+..+ .+|.
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~ 304 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGR 304 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCC
Confidence 3457899999988864 233 3444666532 222222 11122334567999999 7666655 4665
Q ss_pred EEEEEc--cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C---CcEEEEEeeCCCCceeEe
Q 010801 292 VRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 292 i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~---~~i~lwd~~~~~~~~~~~ 365 (501)
..+|.+ ...... .+.+.. +...+....|+|||+.|+... . ..|++||+.+ ++. ..+
T Consensus 305 ~~ly~~~~~~~g~~---~~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~L 366 (428)
T PRK01029 305 PRIYIMQIDPEGQS---PRLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQL 366 (428)
T ss_pred ceEEEEECcccccc---eEEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEc
Confidence 555543 221100 011211 124567889999999988653 2 5799999874 443 333
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC---CCeEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
....... ....|+|||++|+.... ...|+++++.+++. ..+......+...+++|
T Consensus 367 t~~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 367 TTSPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred cCCCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecC
Confidence 3222111 46899999998875433 35688889887643 33333344455566665
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-09 Score=104.60 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=70.3
Q ss_pred eEEEEecCCCCEEEEE--cCCeEEEEE--CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC---CeEE
Q 010801 221 INSISNNSDCETFVSA--DDLRINLWN--LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVR 293 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~ 293 (501)
....+|+|||+.|+.. .++...+|. +...+..... +..+...+....|+|+| +.|+..+.+ ..|.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQIC 354 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEEE
Confidence 3567999999987764 566555554 4311211111 22333456788999999 877766543 4689
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c---CCcEEEEEeeC
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---YMNLKLWDIRM 357 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~---~~~i~lwd~~~ 357 (501)
+||+.+++.. .+.. ....+....|+|||+.|+.. . ...|+++|+..
T Consensus 355 v~dl~~g~~~-----~Lt~-------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 355 VYDLATGRDY-----QLTT-------------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEECCCCCeE-----EccC-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9999887542 2221 01245678999999988743 2 26788888864
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-09 Score=94.26 Aligned_cols=145 Identities=13% Similarity=0.171 Sum_probs=105.9
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCC-eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 292 (501)
.+|...|.-..+..+++-++.| .|| .+-|+|.+ +++..+ +...-+.|.++..+|+| +.++++.....|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-~~e~kr--------~e~~lg~I~av~vs~dG-K~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-GGEVKR--------IEKDLGNIEAVKVSPDG-KKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecC-CceEEE--------eeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence 3666778878887788888888 777 99999999 444333 34556789999999999 999999999999
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE---cC--CcEEEEEeeCCCCceeEeec
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY--MNLKLWDIRMDSTPVATFKI 367 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~---~~--~~i~lwd~~~~~~~~~~~~~ 367 (501)
.+.|+.+++. +..+. . ..+-|+..+|||+++++|-+ +. ..|+++|+.. ++.. ....
T Consensus 426 ~vididngnv-----~~idk-S-----------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy-~vTT 486 (668)
T COG4946 426 WVIDIDNGNV-----RLIDK-S-----------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIY-DVTT 486 (668)
T ss_pred EEEEecCCCe-----eEecc-c-----------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEE-EecC
Confidence 9999999865 33332 1 13579999999999999976 21 7899999974 4433 2222
Q ss_pred cccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
....- .+-+|.||+++|.--+
T Consensus 487 ~ta~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 PTAYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred Ccccc---------------cCcccCCCCcEEEEEe
Confidence 22211 4678889998876443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=112.68 Aligned_cols=150 Identities=15% Similarity=0.270 Sum_probs=121.2
Q ss_pred EEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 38 v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
+.++++.-++++|+.-+.|.+|++...... ..+.||+ +.|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------------~~l~GHe------------G~iF 179 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP---------------------------IRLKGHE------------GSIF 179 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCc---------------------------ceecccC------------CceE
Confidence 345677788999999999999998833221 1588999 9999
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
++.|+ .+|.++++.|.|+++|+|++++.+.....
T Consensus 180 ~i~~s--~dg~~i~s~SdDRsiRlW~i~s~~~~~~~-------------------------------------------- 213 (967)
T KOG0974|consen 180 SIVTS--LDGRYIASVSDDRSIRLWPIDSREVLGCT-------------------------------------------- 213 (967)
T ss_pred EEEEc--cCCcEEEEEecCcceeeeecccccccCcc--------------------------------------------
Confidence 99998 79999999999999999999987633200
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc-ccceEEEEE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEF 275 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~ 275 (501)
.-+|...|+.+.|.|+ .++++ .|.+.++|+.+ ..+ +.. +.+| ...|+.++.
T Consensus 214 ----------------~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~-l~~-------y~~h~g~~iw~~~~ 266 (967)
T KOG0974|consen 214 ----------------GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQ-LEV-------YDEHSGKGIWKIAV 266 (967)
T ss_pred ----------------cccccceeEEEEeccc--eeEEeccceEEEEEecc-cce-ehh-------hhhhhhcceeEEEE
Confidence 0499999999999998 77777 99999999877 333 222 4455 457899999
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 276 HPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
.+.. ..+++++.|+.+++||+...
T Consensus 267 ~~~~-~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 267 PIGV-IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cCCc-eEEEeeccCcchhhhhhhcc
Confidence 9987 89999999999999998764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=99.78 Aligned_cols=251 Identities=14% Similarity=0.131 Sum_probs=144.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccce---eeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+-|.+|.|. ..|.+|++|..+|.|.++.-....- ......+..+ +.
T Consensus 26 diis~vef~--~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe--------------------pE--------- 74 (433)
T KOG1354|consen 26 DIISAVEFD--HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE--------------------PE--------- 74 (433)
T ss_pred cceeeEEee--cccceEeecCCCCeEEEeecccccccceeeeeeeeccC--------------------cc---------
Confidence 558899997 8899999999999999996543221 1111000000 00
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC---EEEEEcCCeEEEEECCCCCeee--------------
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSADDLRINLWNLEISDQCF-------------- 253 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~---~l~~~~d~~i~iwd~~~~~~~~-------------- 253 (501)
...++. ..-...|..+.|.++++ +|+++.|.+|++|-+...+...
T Consensus 75 ----------------FDYLkS--leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~ 136 (433)
T KOG1354|consen 75 ----------------FDYLKS--LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI 136 (433)
T ss_pred ----------------cchhhh--hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcc
Confidence 000111 12245678889987654 3444599999999876322111
Q ss_pred ---eeeecC---------CC--CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCC
Q 010801 254 ---NIVDMK---------PS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (501)
Q Consensus 254 ---~~~~~~---------~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
+...+. +. .-.+|...|.++.++.|+ +.++++ .|=.|.+|++.-..... .+.+. .|..
T Consensus 137 ~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sF---nIVDI---KP~n 208 (433)
T KOG1354|consen 137 TSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSF---NIVDI---KPAN 208 (433)
T ss_pred ceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCce---eEEEc---cccC
Confidence 010011 11 124578889999999998 777765 47789999886543221 22221 0000
Q ss_pred cceeeecccceeEEEEeeCC-CEEEEE-cCCcEEEEEeeCCCCc---eeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 320 KSFFTEIIASISDIKFANDG-QHLLSR-DYMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 320 ~~~~~~h~~~i~~~~~sp~~-~~l~~~-~~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
......-|++..|+|.. ..++.. +-|+|++-|++...-+ -..+.....+... ..-.+.|..|..+.|++
T Consensus 209 ---mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r---sffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 209 ---MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR---SFFSEIISSISDVKFSH 282 (433)
T ss_pred ---HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch---hhHHHHhhhhhceEEcc
Confidence 11123468899999964 444444 4599999999831110 0111111111100 00011222346899999
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
+|+++++-+. -+|++||+.-......+.+.|..
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 9999998876 68999999655455566766654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=92.46 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=116.6
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
...++.|++.+..++++ .+|.+.+-+.. .....+ .+..+.|...++..+|+...++++++|+.|+.+..||+|
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~-----vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEK-----VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecc-eeeeee-----cccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 34578899999999999 99999965544 222221 124688999999999998887899999999999999999
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEcC-CcEEEEEeeCCCCceeEeecccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
..+. .+|.. ..-|...|.++.-+| .+.+|++|+. ..|++||.++-++++..-....+
T Consensus 197 ~p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG------ 255 (339)
T KOG0280|consen 197 IPKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG------ 255 (339)
T ss_pred CCcc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccc------
Confidence 4321 33332 133677899998886 5779999985 99999999976787765543322
Q ss_pred ccCCCCCcceeeEEEEcCC--CcEEEEEeCCCeEEEEecCCC
Q 010801 377 DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.+.++|. ++.|+++..+| .+|-+++.+
T Consensus 256 ----------VWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 256 ----------VWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred ----------eEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 288999985 55677777766 466676654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-09 Score=95.50 Aligned_cols=316 Identities=16% Similarity=0.209 Sum_probs=183.3
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccc
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (501)
=+-+.|||-|.||+|--..| |.+|--++-.. ++.| .| .
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------------~~RF-~H-------------p 250 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------------IQRF-YH-------------P 250 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH---------------------------HHhc-cC-------------C
Confidence 46799999999999987665 78896442211 1111 24 4
Q ss_pred ceeEEEEeecCCCCEEEEeeCC-----------CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 115 KINRVRWCAAPNGSMFILSTND-----------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d-----------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
.|.-+.|| |+.++|++=+.. ..++|||+.+|..++.....
T Consensus 251 ~Vq~idfS--P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--------------------------- 301 (698)
T KOG2314|consen 251 GVQFIDFS--PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--------------------------- 301 (698)
T ss_pred CceeeecC--CccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc---------------------------
Confidence 48889998 788999986522 46788888887765543110
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceE-EEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN-SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.....++ -..||.|++++|.-....|.||+..+ ...++.++.
T Consensus 302 --------------------------------~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps----f~lld~Ksl- 344 (698)
T KOG2314|consen 302 --------------------------------KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS----FMLLDKKSL- 344 (698)
T ss_pred --------------------------------CCCccccceEEeccCCceeEEeccceEEEEecCc----eeeeccccc-
Confidence 0111222 35789999998876557899998773 222222221
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeC-----CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
....|....|+|.+ ++||.=.. -..+.+..+.+++.+ +.-.. |.-.=..+-|-.
T Consensus 345 ---ki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nl-------------fnVsDckLhWQk 403 (698)
T KOG2314|consen 345 ---KISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNL-------------FNVSDCKLHWQK 403 (698)
T ss_pred ---CCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCcccee----eeccc-------------eeeeccEEEecc
Confidence 23457888999997 88875433 234555555544322 11111 111223455667
Q ss_pred CCCEEEEEcC-----------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC--
Q 010801 338 DGQHLLSRDY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-- 404 (501)
Q Consensus 338 ~~~~l~~~~~-----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-- 404 (501)
+|.+|+.-.| ..+.|+.++...-++......... ...+|-|.|..+++-+.
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccc
Confidence 8888875321 235566665323344444333222 68999999987775543
Q ss_pred -CCeEEEEecCC-CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC--Cc-ccccccCCCeEE
Q 010801 405 -SNLLRIFSHGV-GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--HH-ELSYNLSSKLLH 478 (501)
Q Consensus 405 -dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~--~~-~~~~~~~~~i~~ 478 (501)
..++.+|.+++ .........-.+...+.+-++| .|++ ....+.+|..+. ...+++- .. ....+|. ..+.
T Consensus 468 ~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsP--kG~f--vvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~ 542 (698)
T KOG2314|consen 468 VKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSP--KGRF--VVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATE 542 (698)
T ss_pred cccceeEEEeecCCCchhhhhhhcccccceEEEcC--CCcE--EEEEEecccccceEEEecchhhhhhccCcccc-cccc
Confidence 46789998883 3222122222234556777888 6777 222233344444 4444431 11 1112222 3467
Q ss_pred EEEccCCCEEEEee-------CCeEEEEe
Q 010801 479 LAWHPTTNLIACAN-------GNSLFFHY 500 (501)
Q Consensus 479 ~~~sp~~~~la~~~-------~~~~~i~~ 500 (501)
+-|.|.|.++++++ ++|..||+
T Consensus 543 veWDPtGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 543 VEWDPTGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred ceECCCCCEEEEeeehhhhccccceEEEE
Confidence 89999999999887 56677765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-09 Score=97.21 Aligned_cols=276 Identities=14% Similarity=0.168 Sum_probs=159.1
Q ss_pred cceEEEEEccCCCEEEEEe-----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCC
Q 010801 33 DIVSAIEFDKTGDYLAVGD-----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~-----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 101 (501)
..|.-+.|||+.+||+|=+ +...++|||+.+|... +.|..-.
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk---------------------------rsF~~~~ 302 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK---------------------------RSFPVIK 302 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh---------------------------cceeccC
Confidence 3589999999999999854 2257999999998753 2222211
Q ss_pred cchhhccccccccceeE-EEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCC
Q 010801 102 PEFDYLKSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (501)
Q Consensus 102 ~~~~~~~~~~~~~~V~~-v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
. ...++. .+|| .|++++|--.. .+|.||+.....+....... -.++....++|
T Consensus 303 ~----------~~~~WP~frWS--~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk-------------i~gIr~FswsP 356 (698)
T KOG2314|consen 303 S----------PYLKWPIFRWS--HDDKYFARMTG-NSISIYETPSFMLLDKKSLK-------------ISGIRDFSWSP 356 (698)
T ss_pred C----------CccccceEEec--cCCceeEEecc-ceEEEEecCceeeecccccC-------------CccccCcccCC
Confidence 0 022333 4787 78899887766 46999987764433221111 12344444444
Q ss_pred CCcccccceeccCcceEEEeccCcee-----------eeeeEeecCCcccceEEEEecCCCCEEEEE-c----C------
Q 010801 181 SFAHGYHLEWTENMATKIANVGNSVH-----------ARCQKVYPHAHDFNINSISNNSDCETFVSA-D----D------ 238 (501)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~w~~~~~~~-----------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d------ 238 (501)
.... +..|..+.+.. .+.+++. .-+.-.=..+-|-.+|.+|+.- + .
T Consensus 357 ~~~l-----------lAYwtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 357 TSNL-----------LAYWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred Ccce-----------EEEEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 4332 23333332211 1111111 1111111245677788888763 1 1
Q ss_pred CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC---CCeEEEEEccCCcccccccceeecccc
Q 010801 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAE 315 (501)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~ 315 (501)
..+.|+.++...-.+..+ .....|...+|.|.| +.+++-+. ..++.+|-+.+.......++.++.
T Consensus 425 ~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--- 492 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--- 492 (698)
T ss_pred eeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc---
Confidence 124566665333333322 234678899999999 66655443 367888888753322223333333
Q ss_pred cCCCcceeeecccceeEEEEeeCCCEEEEEc----CCcEEEEEeeCCCCcee-EeeccccccccccccCCCCCcceeeEE
Q 010801 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (501)
Q Consensus 316 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (501)
...+.+.|+|.|++++.+. .|.+.++|... ..... ....|... +.+
T Consensus 493 ------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~a----------------t~v 543 (698)
T KOG2314|consen 493 ------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFAA----------------TEV 543 (698)
T ss_pred ------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCcccccc----------------ccc
Confidence 4578899999999998652 38999999863 12111 11223322 679
Q ss_pred EEcCCCcEEEEEeCC------CeEEEEecC
Q 010801 391 SVSGDGLHFATGSYS------NLLRIFSHG 414 (501)
Q Consensus 391 ~~s~~~~~l~s~~~d------g~i~iwd~~ 414 (501)
.|.|.|+|+++++.- .--+||++.
T Consensus 544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eECCCCCEEEEeeehhhhccccceEEEEee
Confidence 999999999998863 334555554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-09 Score=99.41 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=96.1
Q ss_pred CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE--EeCCCeEEEEEccCCcccccccceeeccccc
Q 010801 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (501)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 316 (501)
.++++.+++ +..+.-. + ...++|.++.|+|++ +.|++ |-.-..+.+||++.. -+++- .
T Consensus 251 q~Lyll~t~-g~s~~V~-------L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~-------~v~df-~-- 310 (566)
T KOG2315|consen 251 QTLYLLATQ-GESVSVP-------L-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGK-------PVFDF-P-- 310 (566)
T ss_pred ceEEEEEec-CceEEEe-------c-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCC-------EeEeC-C--
Confidence 367777777 3322211 1 246899999999999 65554 445788999999864 23332 1
Q ss_pred CCCcceeeecccceeEEEEeeCCCEEEEEc--C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 317 HGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 317 ~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.++-+.+-|+|.|++|+.++ . |.|.+||+.+ .+++..+..... +-+.|
T Consensus 311 ----------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~t-----------------t~~eW 362 (566)
T KOG2315|consen 311 ----------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANT-----------------TVFEW 362 (566)
T ss_pred ----------CCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCc-----------------eEEEE
Confidence 36778999999999988653 3 9999999986 888888876665 45999
Q ss_pred cCCCcEEEEEeC------CCeEEEEecCC
Q 010801 393 SGDGLHFATGSY------SNLLRIFSHGV 415 (501)
Q Consensus 393 s~~~~~l~s~~~------dg~i~iwd~~~ 415 (501)
+|||++++|++. |+.++||+...
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 999999998875 78899999864
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=97.75 Aligned_cols=205 Identities=10% Similarity=0.150 Sum_probs=135.5
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+++++.+.++...|++|-.+|++.-+.+...-. ...+.+....|.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~---------- 114 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ---------- 114 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh----------
Confidence 67899999999999999999999998887653211 122334556677
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|..+-|+ ....++++.+.|..+.---.+.+....-..+. ....... .+..+.+.|..
T Consensus 115 --~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--------------~~~t~~~--~d~~~~fvGd~- 173 (404)
T KOG1409|consen 115 --ARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--------------TPASALQ--FDALYAFVGDH- 173 (404)
T ss_pred --cceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEee--------------ccCCCCc--eeeEEEEeccc-
Confidence 889999997 45679999999987754444433311110000 0000000 00001222221
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+.+....+.... -..+.++ .+|.+.+.+++|.+....+.+| .|..+.+||+. ..+-... .+.+|...|
T Consensus 174 -~gqvt~lr~~~~~-~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~------el~gh~~kV 243 (404)
T KOG1409|consen 174 -SGQITMLKLEQNG-CQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY------ELQGHNDKV 243 (404)
T ss_pred -ccceEEEEEeecC-CceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee------eeccchhhh
Confidence 2233333322211 1223333 8999999999999999999999 99999999998 4433322 378899999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 301 (501)
..+...+.- +.+.+++.||.|-+||+....
T Consensus 244 ~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 244 QALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 999888887 899999999999999997653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-08 Score=103.09 Aligned_cols=354 Identities=12% Similarity=0.093 Sum_probs=187.9
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEE----EecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILF----ETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.+.|.++.|-++...|+.+..+|.|.+. +..+.+ .+....+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-------------------------~E~VG~v---------- 119 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-------------------------IEIVGSV---------- 119 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-------------------------eEEEEEE----------
Confidence 5789999999999999999999999999 433322 1122222
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.+|.+++|| ||+..|+.++.++++.+... +...+........ .......+..-++...+- +.
T Consensus 120 -----d~GI~a~~WS--PD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~--------~~~~~~~VsVGWGkKeTQ-F~ 182 (928)
T PF04762_consen 120 -----DSGILAASWS--PDEELLALVTGEGNLLLMTR-DFDPISEVPLDSD--------DFGESKHVSVGWGKKETQ-FH 182 (928)
T ss_pred -----cCcEEEEEEC--CCcCEEEEEeCCCEEEEEec-cceEEEEeecCcc--------ccCCCceeeeccCcccCc-cC
Confidence 2789999998 89999999999998887642 2222222211100 011111222222111100 00
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c----C--CeEEEEECCCCCeeeeeeecCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----D--LRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d--~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
|.......-++-+.... ....... . ....-..++|..||+++|++ - + ..+++|+.+ +....+
T Consensus 183 Gs~gK~aa~~~~~p~~~--~~d~~~~-s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~st----- 251 (928)
T PF04762_consen 183 GSAGKAAARQLRDPTVP--KVDEGKL-S-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQST----- 251 (928)
T ss_pred cchhhhhhhhccCCCCC--ccccCcc-c-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEec-----
Confidence 00000000000000000 0000001 2 44456689999999999985 2 2 579999988 333221
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeC---CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
.+.-.+--.+++|.|.| ++||+... ...|.+|.-..-+. .-|.. .. ......|..+.|++
T Consensus 252 --SE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrh-----geF~l-~~--------~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 252 --SEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRH-----GEFTL-RF--------DPEEEKVIELAWNS 314 (928)
T ss_pred --cccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEe-----eeEec-CC--------CCCCceeeEEEECC
Confidence 12222223578999999 99988765 34566665332211 11222 00 01235789999999
Q ss_pred CCCEEEEEcCCcEEEEEeeCCCC--ceeEeeccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecC
Q 010801 338 DGQHLLSRDYMNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 338 ~~~~l~~~~~~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 414 (501)
|+..||..-...|.+|-..+ .. ..+++....... + ..+.|+|. ...|...+.+|.+..++..
T Consensus 315 ds~iLAv~~~~~vqLWt~~N-YHWYLKqei~~~~~~~-----------~---~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 315 DSEILAVWLEDRVQLWTRSN-YHWYLKQEIRFSSSES-----------V---NFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCEEEEEecCCceEEEeeC-CEEEEEEEEEccCCCC-----------C---CceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 99999987656699998764 32 222333222211 0 35999995 4457777776777666543
Q ss_pred CCCcceEEEecccCcccceeeccCCccccCccceeeeecccce--ee--ccccC----CcccccccCCCeEEEEEccCCC
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HE--NSSSG----HHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~i--w~~~~----~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
-.-.. .. ...|...+ ..+--||. .+ +...- .......+...|.+++|++++.
T Consensus 380 ~~v~~-----s~-------~~~~~D~g--------~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~ 439 (928)
T PF04762_consen 380 WDVSR-----SP-------GSSPNDNG--------TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS 439 (928)
T ss_pred EEEEe-----cC-------CCCccCce--------EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence 11000 00 00000000 11111222 11 11110 0112235678999999999998
Q ss_pred EEEEeeCCe-EEEEe
Q 010801 487 LIACANGNS-LFFHY 500 (501)
Q Consensus 487 ~la~~~~~~-~~i~~ 500 (501)
.+|+-..++ +.+|.
T Consensus 440 ~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYE 454 (928)
T ss_pred eEEEEECCCCEEEEE
Confidence 777666555 88775
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-09 Score=101.27 Aligned_cols=194 Identities=17% Similarity=0.279 Sum_probs=141.3
Q ss_pred ccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEE
Q 010801 41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120 (501)
Q Consensus 41 s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 120 (501)
.|-+.|+|....||.++||+..+++.. -++.+...+. +...+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~---------------------~e~~p~~~~s---------------~t~~~~~ 45 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQ---------------------QEFAPIASLS---------------GTCTYTK 45 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceee---------------------eeeccchhcc---------------CcceeEE
Confidence 456789999999999999999987652 1122222222 2223333
Q ss_pred Eee------------------cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 121 WCA------------------APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 121 ~~~------------------~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
|.- ..+...++-|...|.|.+|++..+++......
T Consensus 46 w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st--------------------------- 98 (541)
T KOG4547|consen 46 WGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLST--------------------------- 98 (541)
T ss_pred EEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEec---------------------------
Confidence 320 12334566677888888888888776544311
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
..|.+.|.++.++.+-..|.++ .|+.+..|+.. ..+..+.
T Consensus 99 --------------------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~------ 139 (541)
T KOG4547|consen 99 --------------------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI------ 139 (541)
T ss_pred --------------------------------CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee------
Confidence 5889999999999998899998 99999999998 5556654
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--- 338 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--- 338 (501)
...-...+.+++.+||+ .++++++ +.|++||+.+.+.. ..| .||.++|..+.|.-+
T Consensus 140 -~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kevv----~~f-------------tgh~s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 140 -WKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEVV----ITF-------------TGHGSPVRTLSFTTLIDG 198 (541)
T ss_pred -eccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceEE----EEe-------------cCCCcceEEEEEEEeccc
Confidence 34455678899999998 9998876 58999999998654 444 458899999999987
Q ss_pred --CCEEEEEcC--CcEEEEEeeC
Q 010801 339 --GQHLLSRDY--MNLKLWDIRM 357 (501)
Q Consensus 339 --~~~l~~~~~--~~i~lwd~~~ 357 (501)
|++++++.. .-+.+|-++.
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccceeeeccccccceeEEEEEc
Confidence 788887643 6788887764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-10 Score=102.70 Aligned_cols=208 Identities=14% Similarity=0.124 Sum_probs=145.2
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
+...++|....||.+++|+...++....+..... ....++--.|.+...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-------------------------------~s~t~~~~~w~L~~~ 51 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-------------------------------LSGTCTYTKWGLSAD 51 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchh-------------------------------ccCcceeEEEEEEec
Confidence 4567899999999999999998876554321110 111112223332211
Q ss_pred eeeeeeEeecCCcccceEEEEe----cCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC
Q 010801 205 VHARCQKVYPHAHDFNINSISN----NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 279 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~----~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 279 (501)
..|+ ...++.+ +.+...++-| ..|.|.+|++. .++....+ .-..|.+.|.++.++.+-
T Consensus 52 --~s~~---------k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~ 114 (541)
T KOG4547|consen 52 --YSPM---------KWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL 114 (541)
T ss_pred --cchH---------HHHhHHHHhhccCCceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc
Confidence 0111 1112211 2344466678 89999999999 44443322 246799999999999887
Q ss_pred CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCC
Q 010801 280 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 359 (501)
Q Consensus 280 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~ 359 (501)
..|.+++.|+.+..|+....... +.+.. -...+.+++.+|||+.+++++ ++|++||+.+ .
T Consensus 115 -~ciyS~~ad~~v~~~~~~~~~~~----~~~~~-------------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-k 174 (541)
T KOG4547|consen 115 -GCIYSVGADLKVVYILEKEKVII----RIWKE-------------QKPLVSSLCISPDGKILLTAS-RQIKVLDIET-K 174 (541)
T ss_pred -CceEecCCceeEEEEecccceee----eeecc-------------CCCccceEEEcCCCCEEEecc-ceEEEEEccC-c
Confidence 89999999999999999887554 44444 235689999999999999887 8999999996 9
Q ss_pred CceeEeeccccccccccccCCCCCcceeeEEEEcCC-----CcEEEE-EeCCCeEEEEecCC
Q 010801 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GLHFAT-GSYSNLLRIFSHGV 415 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~~l~s-~~~dg~i~iwd~~~ 415 (501)
+.+..|.+|..++ .+++|..+ |.++.+ ...+.-+.+|-+..
T Consensus 175 evv~~ftgh~s~v---------------~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 175 EVVITFTGHGSPV---------------RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEecCCCcce---------------EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999999987 56777655 566554 45567788887764
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-10 Score=110.25 Aligned_cols=148 Identities=12% Similarity=0.101 Sum_probs=120.3
Q ss_pred EecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 225 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 225 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
-++++.-++++| .-+.|.+|+........ .+.+|.+.|.++.++-+| .++++.|.|+++++|++.+++..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI--------RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcc--------eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence 346667788888 89999999988333333 378999999999999999 99999999999999999987643
Q ss_pred ccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCC
Q 010801 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 382 (501)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (501)
. . ..-+|+..+..+.|.|+ .++++ .|-+.++|+.. +..+..+.+|...-
T Consensus 211 ~-------~---------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~---------- 260 (967)
T KOG0974|consen 211 G-------C---------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKG---------- 260 (967)
T ss_pred C-------c---------ccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhcc----------
Confidence 1 0 12458899999999998 66665 57999999875 67777888876642
Q ss_pred CcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 383 ~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+..++..++...++|++.||.+++|++..
T Consensus 261 ----iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 261 ----IWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ----eeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 27899999999999999999999999864
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-09 Score=88.29 Aligned_cols=266 Identities=14% Similarity=0.070 Sum_probs=162.9
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecC---CCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.|.+.++++....... +..+.....+.+..+.|.. +|. .++-+ ..|.|.++........... .+.......
T Consensus 45 ~Gkl~Lys~~d~~~~~-l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L---~~ls~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL---RGLSSKKIS 120 (339)
T ss_pred ccceEEEeecccccCc-cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee---cccchhhhh
Confidence 4556666666543222 2222123345566677742 444 34446 7899999987632222221 111111111
Q ss_pred c-ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEE
Q 010801 268 E-VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 345 (501)
Q Consensus 268 ~-~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~ 345 (501)
. ...++.|++.+ ..++++..+|.+.+-+.....+. ..+.+ +.|.-.++.+.|+... +.+.+|
T Consensus 121 ~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le--~vq~w-------------k~He~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 121 VVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLE--KVQTW-------------KVHEFEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred heeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeee--ecccc-------------cccceeeeeeecccCCCceEEec
Confidence 1 24678899988 88999999999986555443221 11233 3467788888888644 566788
Q ss_pred cC-CcEEEEEeeCCCCceeE-eeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 346 DY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 346 ~~-~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
+| +.+..||++.+++.+.. .+.|...+ .++.-+| .+.+|++|+.|-.|++||..+-.+....
T Consensus 185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV---------------~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~ 249 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGV---------------VSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK 249 (339)
T ss_pred CCCceEEEEEecCCcceeeecceeeecce---------------EEEecCCCCCceEEEeccccceeeeehhcccCcccc
Confidence 65 99999999954554443 44555544 5666665 5779999999999999999864333222
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccceeecccc----C---CcccccccCCCeEEEEEccCCCEEEEee--C
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS----G---HHELSYNLSSKLLHLAWHPTTNLIACAN--G 493 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~----~---~~~~~~~~~~~i~~~~~sp~~~~la~~~--~ 493 (501)
- .-.+.|+.+...|....++ |+.+..+|.++-+.. + .......|.+-+..-.|......||+++ +
T Consensus 250 ~-~v~GGVWRi~~~p~~~~~l-----L~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYD 323 (339)
T KOG0280|consen 250 A-KVGGGVWRIKHHPEIFHRL-----LAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYD 323 (339)
T ss_pred C-ccccceEEEEecchhhhHH-----HHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccc
Confidence 1 2237899999999766666 788888877555222 2 1222345666666778866667788876 4
Q ss_pred CeEE-EE
Q 010801 494 NSLF-FH 499 (501)
Q Consensus 494 ~~~~-i~ 499 (501)
+.++ +|
T Consensus 324 k~~~~~W 330 (339)
T KOG0280|consen 324 KKIRQLW 330 (339)
T ss_pred cceeeee
Confidence 4434 55
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-07 Score=96.44 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=98.7
Q ss_pred EEEecCCCCEEEEE-c---CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 223 SISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
+++|.|.|++||+. . ...|.+|..+ +.....+.++ +......|..+.|++++ ..|+....|. |.+|-..
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~---~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLR---FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecC---CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEee
Confidence 58999999999996 3 4567777766 3333323222 33456688999999998 9999977665 9999887
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc-CCcEEEEEee----CC-------CCceeEe
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIR----MD-------STPVATF 365 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~-~~~i~lwd~~----~~-------~~~~~~~ 365 (501)
+-.--.+..-.+.. ...+..+.|+|.. ..|...+ .+.+..++.. .. ...+..+
T Consensus 334 NYHWYLKqei~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVI 399 (928)
T PF04762_consen 334 NYHWYLKQEIRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVI 399 (928)
T ss_pred CCEEEEEEEEEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEE
Confidence 64211000011111 1334558888853 3344333 2555544432 10 0112222
Q ss_pred ecccc--------ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 366 KIHEH--------LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 366 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.|..- .++.-+..+.-.....+.+++|++++..+++-..||.|.+|....
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 22211 111111112222222447999999998899999999999998644
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-09 Score=100.36 Aligned_cols=381 Identities=13% Similarity=0.099 Sum_probs=211.8
Q ss_pred cccceEEEEEccC------------CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec
Q 010801 31 DVDIVSAIEFDKT------------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ 98 (501)
Q Consensus 31 h~~~v~~v~~s~~------------g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (501)
|+..|+.+.|.|- .-+||++...|.|.+||+..+... ..++
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~---------------------------~~l~ 106 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI---------------------------NWLS 106 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh---------------------------hhhc
Confidence 7899999999873 125788889999999999876542 5577
Q ss_pred cCCcchhhccccccccceeEEEEeecCCC--CEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc-----
Q 010801 99 SHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK----- 171 (501)
Q Consensus 99 ~h~~~~~~~~~~~~~~~V~~v~~~~~~~~--~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 171 (501)
.|. ++|.+++|-+..+. ..|++-....++.+|+..+|+...-..+.. +.+.|+...+-+.
T Consensus 107 ~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 107 HSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred CCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEE
Confidence 777 88999999975444 355566677899999998887544332211 1111111110000
Q ss_pred -----CccccC-------------------------------------CCCCCcccccc--e------------eccCcc
Q 010801 172 -----NFMNEH-------------------------------------NPPSFAHGYHL--E------------WTENMA 195 (501)
Q Consensus 172 -----~~~~~~-------------------------------------~~~~~~~~~~~--~------------~~~~~~ 195 (501)
.+.... ..+....++.- . ..-...
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 000000 00000000000 0 011235
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC-CCccc---
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTE--- 268 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~--- 268 (501)
+-++|++. ..|+... .-..+.+.-+.+-|++ ..|.+. .||.+.+|-.+......+.- ...+ .....
T Consensus 254 llv~dle~---~~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~---~~~l~~dl~~Q~~ 326 (1062)
T KOG1912|consen 254 LLVFDLEY---ECCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP---NASLSMDLGEQVH 326 (1062)
T ss_pred eEEEcchh---hceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc---chhhccccccceE
Confidence 56666665 3344433 2334445556666654 467788 99999999766322211110 0000 00111
Q ss_pred --------ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc-------eeecccccCCC--------cceeee
Q 010801 269 --------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-------ILRDAAESHGS--------KSFFTE 325 (501)
Q Consensus 269 --------~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~~~~~~~~~--------~~~~~~ 325 (501)
.+......|..++.++.--.+|.+.+|.+++++....... .|.- ...+.. .+...+
T Consensus 327 ~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f-~~~~~~v~k~~l~~LS~dg~ 405 (1062)
T KOG1912|consen 327 VVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDF-NLSTKLVGKTSLISLSDDGS 405 (1062)
T ss_pred EEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccc-cCceeehhhccccchhhcCC
Confidence 1222233454335555556688899999987643210000 0000 000000 001123
Q ss_pred cccceeEEEEee-----------CCC-------EEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcce
Q 010801 326 IIASISDIKFAN-----------DGQ-------HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 386 (501)
Q Consensus 326 h~~~i~~~~~sp-----------~~~-------~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (501)
|..........| .|+ ++|.|+. |+|.++|+.+ +.....+..|...+
T Consensus 406 h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst-~~v~~~fsvht~~V-------------- 470 (1062)
T KOG1912|consen 406 HSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST-NAVAASFSVHTSLV-------------- 470 (1062)
T ss_pred CCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc-hhhhhhhcccccce--------------
Confidence 555544444332 222 4566765 9999999986 77778888888876
Q ss_pred eeEEEEcCCCcEEE---------EEeCCCeEEEEecCCCCcceEE--EecccCcccceeeccCCccccCccceeeeeccc
Q 010801 387 KFECSVSGDGLHFA---------TGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (501)
Q Consensus 387 ~~~~~~s~~~~~l~---------s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (501)
.++.|-...+++- +|+.-+.+.|-|+.+|...... -+....+|+.+..+. .+++ |+..-++
T Consensus 471 -kgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~--~~~y-----Lai~Fr~ 542 (1062)
T KOG1912|consen 471 -KGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS--SGRY-----LAILFRR 542 (1062)
T ss_pred -eeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc--cCce-----EEEEecc
Confidence 5677766554432 3444456788899988554332 345667888888887 6777 8888888
Q ss_pred ce-eecccc-CCcccccccCCC-eEEEEEc
Q 010801 456 QA-HENSSS-GHHELSYNLSSK-LLHLAWH 482 (501)
Q Consensus 456 ~~-~iw~~~-~~~~~~~~~~~~-i~~~~~s 482 (501)
.- .+|+.. ..........-+ |+.+.|+
T Consensus 543 ~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 543 EPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred cchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 88 999663 222222222334 8899998
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-07 Score=83.25 Aligned_cols=253 Identities=11% Similarity=0.065 Sum_probs=142.1
Q ss_pred EeecCCCCEEEEeeC----------CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 121 WCAAPNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 121 ~~~~~~~~~l~s~s~----------d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
++ ||++.|+++.. +..|.+||..+.+..........++ ...-........++++++++...+
T Consensus 53 ~s--pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~------~~~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 53 VA--SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR------FLVGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred EC--CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch------hhccCccceEEECCCCCEEEEecC
Confidence 65 78888887754 7899999999998877664432211 001112335566778888887777
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCC-----
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD----- 265 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----- 265 (501)
.++..+.+.|+........+.. . ....-...+ +...++-+.||......+...++.. .-..+ -+..
T Consensus 125 ~p~~~V~VvD~~~~kvv~ei~v---p--~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~--vf~~~~~~v 195 (352)
T TIGR02658 125 SPSPAVGVVDLEGKAFVRMMDV---P--DCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPK-IKPTE--VFHPEDEYL 195 (352)
T ss_pred CCCCEEEEEECCCCcEEEEEeC---C--CCcEEEEec-CCccEEEeecCceEEEEecCCCceE-Eeeee--eecCCcccc
Confidence 7788999999886433222221 1 111111111 1222222333333333333222211 00000 0000
Q ss_pred cccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccc-cceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 266 LTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 266 ~~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
...+ .|.+ +| .++.+..+ |.|.+.|+......... ...+.. ....... ..+.+.-++++|+++.+.
T Consensus 196 ~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~~w-----rP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 196 INHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKADGW-----RPGGWQQVAYHRARDRIY 263 (352)
T ss_pred ccCC----ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccc-ccccccc-----CCCcceeEEEcCCCCEEE
Confidence 0112 4455 66 66655555 99999997654322111 111111 0000000 123455599999998877
Q ss_pred EEc---------C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEe-CCCeEEE
Q 010801 344 SRD---------Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRI 410 (501)
Q Consensus 344 ~~~---------~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~i 410 (501)
... + +.|.++|..+ .+.+..+...... ..++++||++ +|++.. .++.|.+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCcEEE
Confidence 631 1 5799999987 7878777654433 6899999999 777665 5788999
Q ss_pred EecCCCCcc
Q 010801 411 FSHGVGSAG 419 (501)
Q Consensus 411 wd~~~~~~~ 419 (501)
+|..+++.+
T Consensus 327 iD~~t~k~i 335 (352)
T TIGR02658 327 FDAETGKEL 335 (352)
T ss_pred EECcCCeEE
Confidence 999988544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-08 Score=84.63 Aligned_cols=168 Identities=12% Similarity=0.024 Sum_probs=105.8
Q ss_pred eEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
+.++++++|++++++. +...|..|.+......+.-+. ....+..=.+..|+... ..+|++.+||++.|||+|.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-----~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-----EAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-----ecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence 7789999999999886 899999999885444322111 22333344678899887 9999999999999999998
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCC--EEEEEc-CCcEEEEEeeCCCCceeEeecccccccccc
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
...... ... . .-+.|.+.+..+.|++-|. +|.... .+.+.+.|+++ .+..+.+...+...
T Consensus 235 ~~tpm~----~~s-s-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~---- 297 (344)
T KOG4532|consen 235 MATPMA----EIS-S-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVE---- 297 (344)
T ss_pred cccchh----hhc-c-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCcccc----
Confidence 643211 111 0 0123789999999998664 344443 48999999996 66555554333320
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
..++.. .++...|+.++.-+.+.+++ .+.=|++..
T Consensus 298 -~~~~tq--~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 298 -RKHNTQ--HIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred -cccccc--ccccccccCCCcccccccch-hhheeeccc
Confidence 000101 11456676666555554443 234455543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=116.07 Aligned_cols=194 Identities=14% Similarity=0.188 Sum_probs=140.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~ 109 (501)
|-..|.++.=+|...+-+||+.||.|++|....++.. ..++ +-.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v---------------------------~~~rt~g~-------- 2251 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV---------------------------VCFRTAGN-------- 2251 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE---------------------------EEeeccCc--------
Confidence 4577889999999999999999999999998766532 2222 222
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|+.+.|+ ..|+.+..+..||.+.+|.+...-. ... .-++....+..+.. ..++...
T Consensus 2252 ----s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~pk~~---~s~-----------qchnk~~~Df~Fi~--s~~~tag 2309 (2439)
T KOG1064|consen 2252 ----SRVTRSRFN--HQGNKFGIVDGDGDLSLWQASPKPY---TSW-----------QCHNKALSDFRFIG--SLLATAG 2309 (2439)
T ss_pred ----chhhhhhhc--ccCCceeeeccCCceeecccCCcce---ecc-----------ccCCccccceeeee--hhhhccc
Confidence 679999998 7889999999999999999873211 111 11111222222222 3333333
Q ss_pred -eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 -WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 -~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+.++.+.+||........++. ..|...++++++.|..++|++| .+|.|++||++ ..+..+.
T Consensus 2310 ~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r-qrql~h~------------ 2373 (2439)
T KOG1064|consen 2310 RSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR-QRQLRHT------------ 2373 (2439)
T ss_pred cCCCCCcccchhcccCcccceee---eecCCCceEEEEcCcceEEEecCCcCcEEEeehH-HHHHHHH------------
Confidence 3456699999998877777776 6899999999999999999999 99999999999 5554432
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
-+. ++ .. .+|++|+..|.++||++....+.
T Consensus 2374 ~~~----~~-~~-~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2374 FQA----LD-TR-EYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred hhh----hh-hh-heeeccCcccceEEEEccccchh
Confidence 111 44 34 78999999999999999886544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-08 Score=86.53 Aligned_cols=148 Identities=14% Similarity=0.245 Sum_probs=113.2
Q ss_pred ccccccceEEEEEccCCCEEEEEecCC-cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+.|.+.|.-..+.-+++-++.|..|| .+-|+|..+++. +.+.+.-
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------------------------kr~e~~l----- 401 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------------------------KRIEKDL----- 401 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE----------------------------EEeeCCc-----
Confidence 456788899999999998999999999 899999998864 3344444
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.+++.+ ++|++++.+-....+.+.|+.++.....-
T Consensus 402 -------g~I~av~vs--~dGK~~vvaNdr~el~vididngnv~~id--------------------------------- 439 (668)
T COG4946 402 -------GNIEAVKVS--PDGKKVVVANDRFELWVIDIDNGNVRLID--------------------------------- 439 (668)
T ss_pred -------cceEEEEEc--CCCcEEEEEcCceEEEEEEecCCCeeEec---------------------------------
Confidence 779999997 89999999988888989999988754432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC----CeEEEEECCCCCeeeeeeecCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
....+-|+.++|+|+++++|-+ -+ ..|+++|+. +++.....
T Consensus 440 ----------------------------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~vT----- 485 (668)
T COG4946 440 ----------------------------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYDVT----- 485 (668)
T ss_pred ----------------------------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEEec-----
Confidence 3456789999999999999987 44 579999999 66665531
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeC
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSS 288 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~ 288 (501)
...+.=.+-+|.|++ ++|..-+.
T Consensus 486 ---T~ta~DfsPaFD~d~-ryLYfLs~ 508 (668)
T COG4946 486 ---TPTAYDFSPAFDPDG-RYLYFLSA 508 (668)
T ss_pred ---CCcccccCcccCCCC-cEEEEEec
Confidence 122223466899998 77765543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=95.01 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=68.5
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
.+|-+.++.++|+||+++++++ .|..|++-... ..-.+..+ .-+|...|..++.-++ ..|++++.|++|+
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 5999999999999999999999 99999998877 33333332 5689999999999887 5699999999999
Q ss_pred EEEccCCccc
Q 010801 294 LVDMRQSALC 303 (501)
Q Consensus 294 ~wd~~~~~~~ 303 (501)
+||+++++..
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999999765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-07 Score=98.61 Aligned_cols=187 Identities=13% Similarity=0.121 Sum_probs=106.1
Q ss_pred eEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCC--CCCCC------cccceEEEEEecCCCcEEEEEeCCC
Q 010801 221 INSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMDD------LTEVITSAEFHPIYCNLLAYSSSRG 290 (501)
Q Consensus 221 v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~------~~~~v~~v~~~p~~~~~l~~~~~dg 290 (501)
.+.++++|+ +.++++. .++.|++||... +... .+.... ....+ .-.....++++|++..++++-+.++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~-g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISD-GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCC-CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence 357899994 5555555 789999999873 3222 111000 00111 1134578999999833566666789
Q ss_pred eEEEEEccCCcccccccceeec-ccccCCCccee--------eecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCC
Q 010801 291 FVRLVDMRQSALCDHSARILRD-AAESHGSKSFF--------TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 360 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~ 360 (501)
.|++||+.++... ...+ ....+.....+ ...-.....++++++|+++++-. ++.|++||..+ +.
T Consensus 763 ~Irv~D~~tg~~~-----~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~ 836 (1057)
T PLN02919 763 SIRALDLKTGGSR-----LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR 836 (1057)
T ss_pred eEEEEECCCCcEE-----EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence 9999999876421 1110 00000000000 00012346889999998777665 49999999874 33
Q ss_pred ceeEeecccccccccccc-CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 361 PVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+..+.+...... .+. ...........++++++|+++++-+.++.|++||+.++..
T Consensus 837 -v~tiaG~G~~G~--~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 -VTTLAGTGKAGF--KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -EEEEeccCCcCC--CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 333332211000 000 0000000126899999999999999999999999988743
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-08 Score=87.22 Aligned_cols=250 Identities=10% Similarity=0.073 Sum_probs=173.1
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccc-cceeeeeccCCCcccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.++..++||. +.|++.... |...-+.+++.|.++|+|--.+ ++.-..+
T Consensus 15 ~ll~~~eG~~------------d~vn~~~l~--~~e~gv~~~s~drtvrv~lkrds~q~wpsI----------------- 63 (404)
T KOG1409|consen 15 ELLSKIEGSQ------------DDVNAAILI--PKEEGVISVSEDRTVRVWLKRDSGQYWPSI----------------- 63 (404)
T ss_pred hhhhhhcCch------------hhhhhheec--cCCCCeEEccccceeeeEEeccccccCchh-----------------
Confidence 3556677887 778877765 5556788999999999995443 3311110
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
+ .....+++++++.++...|++| ++|++.-+.+...
T Consensus 64 ------------------------------------------~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 64 ------------------------------------------Y-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred ------------------------------------------h-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 0 2345678899999999999999 9999998876522
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
-..... +.....|...+..+.|+-.. +.+++.+.|..+.---.+.+..... ..+.. .
T Consensus 101 fnkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~--Y~~~~----------------~ 157 (404)
T KOG1409|consen 101 FNKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGG--YNFET----------------P 157 (404)
T ss_pred hhhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccc--eEeec----------------c
Confidence 211111 11346789999999999776 8899999888765544444432210 11111 1
Q ss_pred eeEEEEeeCCCEEEEEcC-CcEEEEEeeC-CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 330 ISDIKFANDGQHLLSRDY-MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~~-~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
-+++.+.-. +...|.. |.|.+-.+.. .-.++.++.+|...+ ++++|.|..+.|++|..|..
T Consensus 158 ~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~---------------~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 158 ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV---------------TCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccce---------------EEEEEcCCCcEEEeccccCc
Confidence 122222111 3334432 6666555432 245678888888876 79999999999999999999
Q ss_pred EEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 408 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
+.+||+...+.....+.+|.+.|..+...+ -.+. |.+.+.|+. .+|+.
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~--~t~~-----l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQ--HTRQ-----LISCGEDGGIVVWNM 269 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhh--hhee-----eeeccCCCeEEEEec
Confidence 999999988788899999999999988876 3344 889999999 99943
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.1e-07 Score=82.48 Aligned_cols=252 Identities=11% Similarity=0.123 Sum_probs=138.6
Q ss_pred EccCCCEEEEEec----------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhcc
Q 010801 40 FDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLK 108 (501)
Q Consensus 40 ~s~~g~~latg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~ 108 (501)
+||||+.|+++.. +..|.|||..+.+.. ..+.- -.|+|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~---------------------------~~i~~p~~p~~~--- 102 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI---------------------------ADIELPEGPRFL--- 102 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE---------------------------eEEccCCCchhh---
Confidence 9999999887755 689999999987642 22221 111100
Q ss_pred ccccccceeEEEEeecCCCCEEEEee-C-CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s-~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
....-..++++ +||++++... . +..|.+.|+.+++............++ ..+.-. ......
T Consensus 103 ---~~~~~~~~~ls--~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy------~t~e~~------~~~~~~ 165 (352)
T TIGR02658 103 ---VGTYPWMTSLT--PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF------PTANDT------FFMHCR 165 (352)
T ss_pred ---ccCccceEEEC--CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE------EecCCc------cEEEee
Confidence 00123356676 8999988775 3 799999999999887765432111100 000000 000001
Q ss_pred cceeccCcceEEEeccCcee--eeeeEeecCCcccceEEE-EecC-CCCEEEEEcCCeEEEEECCCCC----eeeeeeec
Q 010801 187 HLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSI-SNNS-DCETFVSADDLRINLWNLEISD----QCFNIVDM 258 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~--~~~~~~~~~~~~~~v~~l-~~~~-~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~ 258 (501)
++......++.... ......+ ......+..= .|.+ +|+.+..+..|.|.+.|+...+ ..+.++..
T Consensus 166 ------Dg~~~~v~~d~~g~~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 166 ------DGSLAKVGYGTKGNPKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred ------cCceEEEEecCCCceEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence 22111111111100 0111111 1111111100 3445 8888888844999999975322 11221100
Q ss_pred CCCCCCCcccceEEEEEecCCCcEEEEEe----------CCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
....-.-......-++++|++ +.+++.. ..+.|.++|..+++.. ..+.. ..
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~v--------------G~ 299 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIEL--------------GH 299 (352)
T ss_pred cccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeC--------------CC
Confidence 000000122334459999998 6665532 1257999999988755 33333 25
Q ss_pred ceeEEEEeeCCC-EEEEEc--CCcEEEEEeeCCCCceeEe
Q 010801 329 SISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 329 ~i~~~~~sp~~~-~l~~~~--~~~i~lwd~~~~~~~~~~~ 365 (501)
.+..++++||++ +|++.. ++.|.++|..+ ++.+.++
T Consensus 300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 789999999999 776654 48899999986 8888777
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-09 Score=98.68 Aligned_cols=170 Identities=12% Similarity=0.165 Sum_probs=120.6
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
....+++|+ .+..+++.|+.||.+++..+.+.....-.. -++...
T Consensus 15 vkL~c~~WN--ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-----------------------------glaa~s---- 59 (1189)
T KOG2041|consen 15 VKLHCAEWN--KESGYIACGGADGLLKVLKLGTDTTDLNKS-----------------------------GLAAAS---- 59 (1189)
T ss_pred ceEEEEEEc--ccCCeEEeccccceeEEEEccccCCccccc-----------------------------cccccc----
Confidence 668899997 788899999999999999887643110000 000000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.-.+...+.+|...|.-+.|+.+.+.|.++ .+|.|.+|-+-.+.-+-..+ -......|.+
T Consensus 60 -------------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi------NnRnKSvV~S 120 (1189)
T KOG2041|consen 60 -------------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------NNRNKSVVVS 120 (1189)
T ss_pred -------------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh------hCcCccEEEE
Confidence 011111237999999999999999999999 99999999887443332221 2334567899
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|+.+| ..+.....||.|.+=.+..++... +-+++ .....+.|++|.+.++.+- .|.+.
T Consensus 121 msWn~dG-~kIcIvYeDGavIVGsvdGNRIwg---KeLkg---------------~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 121 MSWNLDG-TKICIVYEDGAVIVGSVDGNRIWG---KELKG---------------QLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred EEEcCCC-cEEEEEEccCCEEEEeeccceecc---hhcch---------------heccceeecccHHHHHhhhcCCcEE
Confidence 9999999 999999999999888777654332 11222 2456889999998877764 49999
Q ss_pred EEEee
Q 010801 352 LWDIR 356 (501)
Q Consensus 352 lwd~~ 356 (501)
+||-+
T Consensus 182 lydnq 186 (1189)
T KOG2041|consen 182 LYDNQ 186 (1189)
T ss_pred Eeccc
Confidence 99975
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-07 Score=90.31 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=115.6
Q ss_pred cceEEEEEccCCCE-EEEEec---CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 33 DIVSAIEFDKTGDY-LAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 33 ~~v~~v~~s~~g~~-latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..+....|+|||+. ++..+. +..|.++|+.+++.. .+.. ..
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-------------------------~lt~---~~------- 232 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-------------------------KIAS---SQ------- 232 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-------------------------EEec---CC-------
Confidence 46778999999985 665443 346888898877541 1221 22
Q ss_pred ccccccceeEEEEeecCCCCEEEEee-C--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILST-N--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s-~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+......|+ |||+.++... . +..|.++++.+++...+.
T Consensus 233 -----g~~~~~~~S--PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT-------------------------------- 273 (419)
T PRK04043 233 -----GMLVVSDVS--KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT-------------------------------- 273 (419)
T ss_pred -----CcEEeeEEC--CCCCEEEEEEccCCCcEEEEEECCCCcEEEcc--------------------------------
Confidence 445567787 7888776543 2 346777777766543321
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC--eEEEEECCCCCeeeeeeecCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
.+........|+|||+.|+.. ..+ .|.+.|+. ++...++.
T Consensus 274 ------------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt----- 317 (419)
T PRK04043 274 ------------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV----- 317 (419)
T ss_pred ------------------------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc-----
Confidence 111112235799999887764 333 57777877 33333321
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCC---------CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
..+. ....|+|+| +.|+..... ..|.+.|+.++.. +.+.. ......
T Consensus 318 -~~g~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~--------------~~~~~~ 372 (419)
T PRK04043 318 -FHGK----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTA--------------NGVNQF 372 (419)
T ss_pred -cCCC----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCC--------------CCCcCC
Confidence 1111 124899999 766665543 3677888877643 22222 012335
Q ss_pred EEEeeCCCEEEEEc-C-C--cEEEEEeeCCCCceeEeec
Q 010801 333 IKFANDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFKI 367 (501)
Q Consensus 333 ~~~sp~~~~l~~~~-~-~--~i~lwd~~~~~~~~~~~~~ 367 (501)
..|+|||+.|+... . + .+.+.++. +.....+..
T Consensus 373 p~~SPDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l~~ 409 (419)
T PRK04043 373 PRFSSDGGSIMFIKYLGNQSALGIIRLN--YNKSFLFPL 409 (419)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEecC--CCeeEEeec
Confidence 88999999887543 2 3 45555654 554454543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7e-09 Score=88.44 Aligned_cols=249 Identities=16% Similarity=0.158 Sum_probs=141.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc---eeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|++|.|- ..|.++++|...|.|.+|.-.... .+...+++..+ +..
T Consensus 27 d~ItaVefd--~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe--------------------~EF-------- 76 (460)
T COG5170 27 DKITAVEFD--ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHE--------------------LEF-------- 76 (460)
T ss_pred ceeeEEEec--cccceEeecCCCceEEEeecccccccchhhhhhhcccc--------------------cch--------
Confidence 679999995 778899999888999999765432 11111111100 000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC---CEEEEEcCCeEEEEECCCC------------------
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC---ETFVSADDLRINLWNLEIS------------------ 249 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~d~~i~iwd~~~~------------------ 249 (501)
..++. ..-...|..+.|..++ .+|+++.|.+|++|.+...
T Consensus 77 -----------------DYLkS--leieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~ 137 (460)
T COG5170 77 -----------------DYLKS--LEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPM 137 (460)
T ss_pred -----------------hhhhh--ccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccccccc
Confidence 00000 1223467778886543 3566669999999987632
Q ss_pred C-ee--------------eeeeecCCC--CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeec
Q 010801 250 D-QC--------------FNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (501)
Q Consensus 250 ~-~~--------------~~~~~~~~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 312 (501)
+ .. ..++..++. ....|...|.++.|+.+. +.+++ ..|=.|.+|++.-..... .+.+.
T Consensus 138 ~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sF---nIVDi 212 (460)
T COG5170 138 GGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSF---NIVDI 212 (460)
T ss_pred CCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCce---EEEec
Confidence 0 00 011112222 124577778999999987 66665 457789999886543221 22221
Q ss_pred ccccCCCcceeeecccceeEEEEeeCCC--EEEEEcCCcEEEEEeeCCC-----CceeEeeccccccccccccCCCCCcc
Q 010801 313 AAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWDIRMDS-----TPVATFKIHEHLRPKLCDLYNNDSIF 385 (501)
Q Consensus 313 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~~~~~~~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (501)
.|. .......-|++..|+|... ++.+.+.|.|++-|++... +.+.........+.. -.+.+.
T Consensus 213 ---KP~---nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~f-----f~eivs 281 (460)
T COG5170 213 ---KPH---NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDF-----FEEIVS 281 (460)
T ss_pred ---cCc---cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchh-----HHHHhh
Confidence 000 0011234588889999643 3334456999999998311 111111110000000 001111
Q ss_pred eeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 386 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 386 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
.+..+.|+++|+++++-+. -+|+|||+...+...++..-|..
T Consensus 282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 2368999999999998877 58999999887766677766643
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-09 Score=100.29 Aligned_cols=299 Identities=14% Similarity=0.146 Sum_probs=180.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.-.+.+.++..+|.|+-+|.++.-| +.|-|+...-. ..+.+..+ +|
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----------------------ppr~l~h~---tp------- 67 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----------------------PPRWLHHI---TP------- 67 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-----------------------Cceeeecc---Cc-------
Confidence 3468899999999999999998776 56677664311 22222222 22
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
-.|-.+.|++.+.-.+-++......-.+|++....-.
T Consensus 68 ----w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~--------------------------------------- 104 (1081)
T KOG0309|consen 68 ----WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN--------------------------------------- 104 (1081)
T ss_pred ----chhcceecccCCCCceeEEecCcchhhhhhhhcCCcc---------------------------------------
Confidence 2377788987665555555544455667887543210
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+.-++.+|...|+.+.|+|... .++++ .|-.+..||+++....+..+ ..-.
T Consensus 105 -------------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------~~w~ 158 (1081)
T KOG0309|consen 105 -------------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------SSWR 158 (1081)
T ss_pred -------------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-------eccc
Confidence 11111269999999999998755 55667 89999999999777666543 2223
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC--CCEEEEE
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~~~ 345 (501)
.....|+|+-..++.+++ +..+.|.+||++.+.... .. +++|...|+.+.|..- ++.+-+.
T Consensus 159 s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl---~s-------------~K~~vs~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPL---CS-------------LKGHVSSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred ccCceeeecccCcchhhh-ccCCceEEEeccCCCcce---EE-------------ecccceeeehHHHhhhhhhhhcccC
Confidence 445789999776455554 666789999999875431 11 2335677888888753 3334344
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC--CcEEE---------EEeCCCeEEEEecC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFA---------TGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~---------s~~~dg~i~iwd~~ 414 (501)
.|++|+.||.....+.-........++ +.-.+-|= |.++. --.-+..-..|+..
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt~~pi---------------w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~ 286 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTTNFPI---------------WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVF 286 (1081)
T ss_pred CCCceeeecccccccccceeccccCcc---------------eeccccccCceeEeccccCCeeeeeccccchhhhhccc
Confidence 679999999864222111111111111 23333332 22222 11122333446665
Q ss_pred CCCcceEEEecccCcccceeeccCCc--cccCcc-ceeeeecccce-eecccc
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPR--ARRSSL-SNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~-~~l~~~~~~~~-~iw~~~ 463 (501)
++-..+.++.+|.+.|....+-.... +.+... -.|++=++|.. ++|..+
T Consensus 287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 56566899999999887766643211 111000 12889999999 999555
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-09 Score=100.89 Aligned_cols=238 Identities=15% Similarity=0.166 Sum_probs=157.8
Q ss_pred EEEecCC--CCEEEEE-cCCeEEEEECCCC-CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 223 SISNNSD--CETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 223 ~l~~~~~--~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
...|+|. -.+-++. ....-.+|++... .+.+..+ +.+|...|+.+.|+|..+..+++++.|-.++.||++
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEE------EecCccceeccccCCCCCcceeeccccccceeeecc
Confidence 4455543 2344444 6666778887632 2233332 678999999999999998899999999999999999
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
+..... ..+.. -......+.|+- ++..+|+...+.|++||++.++.++..+++|...+
T Consensus 146 Sp~~p~---ys~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v----- 204 (1081)
T KOG0309|consen 146 SPHRPF---YSTSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV----- 204 (1081)
T ss_pred CCCcce---eeeec-------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee-----
Confidence 864321 11111 123567788885 45566665558999999999889999999876654
Q ss_pred cCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeec---
Q 010801 378 LYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL--- 453 (501)
Q Consensus 378 ~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~--- 453 (501)
..++|..- ...+.+.+.||+|+.||.+..............+++.-.+.|-.+|+. ++-..-+.
T Consensus 205 ----------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~--~mp~~G~n~v~ 272 (1081)
T KOG0309|consen 205 ----------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC--IMPMVGGNMVP 272 (1081)
T ss_pred ----------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE--eccccCCeeee
Confidence 56666542 345788999999999999876555566667777888888888766654 11111110
Q ss_pred ---ccce-eec---cccCCcccccccCCCeEEEEEccCCC----------EEEEee-CCeEEEE
Q 010801 454 ---YRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN----------LIACAN-GNSLFFH 499 (501)
Q Consensus 454 ---~~~~-~iw---~~~~~~~~~~~~~~~i~~~~~sp~~~----------~la~~~-~~~~~i~ 499 (501)
.+.. ..| .....+....+|...|...-|-..+. .|++=+ +-.+.+|
T Consensus 273 ~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 273 QLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 1111 233 23345555668888887777765443 566666 3447777
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=98.32 Aligned_cols=218 Identities=21% Similarity=0.256 Sum_probs=142.8
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccC
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
+..+.||. ..|..++-. .+.+-+++++.|++|++|.++... ...
T Consensus 728 L~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~--------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIG--------------------- 772 (1034)
T ss_pred eecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccc---------------------
Confidence 45677888 788888654 567789999999999999987532 111
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCee
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 252 (501)
...|..+| ..|..+|.++.|-.+.+.++++ |+.|.+||.-.+...
T Consensus 773 ---------------------------------tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 773 ---------------------------------TSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLL 817 (1034)
T ss_pred ---------------------------------cceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchh
Confidence 12355556 7999999999999888777665 678999997633332
Q ss_pred eeeeecCCCCCCCcccceEEEEEecC-CCcE-EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPI-YCNL-LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
.+.. -....+.+..+..-|+ ...+ ++.++...+|+++|.+..+.. ..+.. .+.+ +....+
T Consensus 818 aq~~------dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~----~E~kV-cna~-------~Pna~~ 879 (1034)
T KOG4190|consen 818 AQME------DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT----CELKV-CNAP-------GPNALT 879 (1034)
T ss_pred Hhhh------cCcccCCCceeEecccCcchheeeeccchhhheeeecccccce----eeEEe-ccCC-------CCchhe
Confidence 2221 1111222333333333 2133 444477899999999987543 22222 1111 123568
Q ss_pred eEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 331 SDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
.+++..|.|++++++ +.|.|.+.|.++ ++.+..+..-.-.. ..++ .|..+.|+....|.++.
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdl---------------lqla-apsdq~L~~saldHsla 942 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDL---------------LQLA-APSDQALAQSALDHSLA 942 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchh---------------hhhc-CchhHHHHhhcccceeE
Confidence 899999999999998 569999999996 88776665332211 1232 34556777777788888
Q ss_pred E-EecCCC
Q 010801 410 I-FSHGVG 416 (501)
Q Consensus 410 i-wd~~~~ 416 (501)
+ |....+
T Consensus 943 VnWhaldg 950 (1034)
T KOG4190|consen 943 VNWHALDG 950 (1034)
T ss_pred eeehhcCC
Confidence 8 877665
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-08 Score=87.93 Aligned_cols=325 Identities=15% Similarity=0.131 Sum_probs=200.1
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.-|.+.|+.+..+. .+++.+++.||.++.|.-..- ...+++..+..|.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHL------- 53 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHH-------
Confidence 34788888887764 679999999999999984421 1334667788888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++.+ .++-.+.+.+. |..++++|+++-...........+ +...+.....+...+.+
T Consensus 54 -----~~I~sl~~S--~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-----------g~a~wv~skGd~~s~IA 115 (558)
T KOG0882|consen 54 -----GVILSLAVS--YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-----------GFAEWVTSKGDKISLIA 115 (558)
T ss_pred -----HHHHhhhcc--ccceeEeeccCcccceeEEEeeccchhhhcccccCC-----------CceEEecCCCCeeeeEE
Confidence 888888887 67888888776 999999999886655443332222 11112122222222333
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeee---eeecCCC--
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN---IVDMKPS-- 261 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~---~~~~~~~-- 261 (501)
.....++.+.++|-..... ....+..-|..+|.++.+++-+..+++. ..|.|.-|..+..-+..+ .+..+..
T Consensus 116 Vs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd 193 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD 193 (558)
T ss_pred eecccCCCcEEECCcCCcC--ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence 3344566777777665332 2222225789999999999999999998 899999998872111000 0111111
Q ss_pred --CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCC-cc--------------eee
Q 010801 262 --NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KS--------------FFT 324 (501)
Q Consensus 262 --~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~ 324 (501)
.+..-.....++.|+|++ ..+.+-+.|..|++++.+++++....-.........+.. .. .+.
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 122234567899999999 999999999999999999987653111111110000000 00 012
Q ss_pred ecc-cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCC--------------CCCcceeeE
Q 010801 325 EII-ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN--------------NDSIFDKFE 389 (501)
Q Consensus 325 ~h~-~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 389 (501)
.|. ..-..+.|...|++|+.|+---|++.++.+ +...+.+--.+........+|. .+. -.
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~n----p~ 347 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNN----PL 347 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccC----cc
Confidence 222 344677899999999998876689999986 5554443211111110001110 000 12
Q ss_pred EEEcCCCcEEEEEeCCCeEEEE
Q 010801 390 CSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 390 ~~~s~~~~~l~s~~~dg~i~iw 411 (501)
+.+.+|..+++++-...++++|
T Consensus 348 ~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 348 LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred cccCCCCeEEEeeeecceEEEE
Confidence 4466777788888888888888
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-06 Score=82.56 Aligned_cols=148 Identities=11% Similarity=0.095 Sum_probs=86.2
Q ss_pred ceEEEEecCCCCEEEEE--c--CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CC--eE
Q 010801 220 NINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FV 292 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i 292 (501)
......|+|||+.++.. . +..|.++|+. ++.... +..+........|+||| +.|+..+. .+ .|
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~--------LT~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQ--------ITNYPGIDVNGNFVEDD-KRIVFVSDRLGYPNI 303 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEE--------cccCCCccCccEECCCC-CEEEEEECCCCCceE
Confidence 34456799999887754 3 3568888887 343333 22222223345799999 66665553 33 57
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C---------CcEEEEEeeCCCCce
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---------MNLKLWDIRMDSTPV 362 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~---------~~i~lwd~~~~~~~~ 362 (501)
.++|+.+++.. ++... +. ....|+|||++|+... . ..|.+.|+.. + ..
T Consensus 304 y~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g-~~ 361 (419)
T PRK04043 304 FMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-D-YI 361 (419)
T ss_pred EEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-C-Ce
Confidence 77787766432 11111 11 1248999999988542 1 2577777764 3 33
Q ss_pred eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-C--eEEEEecCC
Q 010801 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGV 415 (501)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g--~i~iwd~~~ 415 (501)
..+...... ....|+|||+.|+..+.+ + .+.+.+++.
T Consensus 362 ~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 362 RRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 444332111 358899999988765543 2 355666654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-06 Score=81.36 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=79.2
Q ss_pred CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
..++.+ .++.+..||.++++...+. ........ .... .+.... + ..++.+..+|.+..+|.++++.....
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~~~~-~~~~-~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~--- 216 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATGERLWTY-SRVTPALT-LRGS-ASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQ--- 216 (377)
T ss_pred CEEEEECCCCeEEEEEcCCCceeeEE-ccCCCcee-ecCC-CCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeee---
Confidence 355556 8899999999855543332 11100000 0000 111122 2 35677888899999999988643210
Q ss_pred eecccccCCCcceeeecccce-eEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 310 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~i-~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
.. . .+...... .....+ ....+ .++..++++.++.++.||.++ ++.+....... . .
T Consensus 217 -~~-~-~~~g~~~~-~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~-~----------------~ 273 (377)
T TIGR03300 217 -RV-A-LPKGRTEL-ERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRS-GRVLWKRDASS-Y----------------Q 273 (377)
T ss_pred -cc-c-cCCCCCch-hhhhccCCccEE-ECCEEEEEEcCCEEEEEECCC-CcEEEeeccCC-c----------------c
Confidence 00 0 00000000 000001 11112 134344444569999999986 66554443111 1 1
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
.... ++..++.++.||.|+.+|..+++.+
T Consensus 274 ~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 274 GPAV--DDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred CceE--eCCEEEEECCCCeEEEEECCCCcEE
Confidence 2222 4567788889999999999988543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-06 Score=70.70 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=111.1
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC-----CcEEEEEeCCCeEE
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----CNLLAYSSSRGFVR 293 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-----~~~l~~~~~dg~i~ 293 (501)
.=+.++|+||+.+||.+ ..|+|++||+. +..... +.............|..+.|-+.. ...|++-..+|.++
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~-I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFV-IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEE-cCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 34579999999999999 99999999998 444432 211111122334667777775432 13577778888888
Q ss_pred EEEccCCccc-ccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C-C---------cEEEEEeeCCCC
Q 010801 294 LVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-M---------NLKLWDIRMDST 360 (501)
Q Consensus 294 ~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~-~---------~i~lwd~~~~~~ 360 (501)
-|-+..+... .+....+.- ...+...|.++.++|..++|+.|+ . . -+.-|.+-. +.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf----------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~~ 191 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSF----------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-DS 191 (282)
T ss_pred eEEEEcccCCcceeeEEEEe----------cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-CC
Confidence 8876443211 111112211 122467899999999988887653 1 1 366777653 33
Q ss_pred ceeE-eeccccccc---------cccc-------cCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 361 PVAT-FKIHEHLRP---------KLCD-------LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 361 ~~~~-~~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+... ....+..+. .+.. ....+.+ ..|..||||+.||+...+|.|.+|++.+-+
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i---~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI---FKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCce---EEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 2221 111111110 0000 1123344 699999999999999999999999998763
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-08 Score=102.54 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=136.5
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
..+-..|.++.-+|...+.++| .||.|++|....+.+.+ .+ ...+. ..|+.+.|+.+| +.+..+..||.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~-~~-----rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV-CF-----RTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE-Ee-----eccCc-chhhhhhhcccC-CceeeeccCCcee
Confidence 3556678888889988899999 99999999988444433 22 12333 789999999999 9999999999999
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE---cC-CcEEEEEeeCCCCceeEeeccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~---~~-~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
+|.... +.+.. ...|........|-. ..++++ +| +.+.+||.-.....-..-..|.
T Consensus 2277 l~q~~p--------k~~~s----------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2277 LWQASP--------KPYTS----------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred ecccCC--------cceec----------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 998763 22222 133566777777774 556654 24 8999999754333222236676
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCcccee
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
+.. +.+++.|..++|++||.+|.|++||+... .+.++++. .. ...+ +
T Consensus 2337 ~ga---------------T~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~---~~~~-----f 2383 (2439)
T KOG1064|consen 2337 GGA---------------TVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD---TREY-----F 2383 (2439)
T ss_pred CCc---------------eEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh---hhhe-----e
Confidence 655 78999999999999999999999999865 33344433 10 1112 8
Q ss_pred eeecccce-eeccccCC
Q 010801 450 TRGLYRQA-HENSSSGH 465 (501)
Q Consensus 450 ~~~~~~~~-~iw~~~~~ 465 (501)
++|+.+|. +||+.++.
T Consensus 2384 ~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eccCcccceEEEEcccc
Confidence 99999999 99966643
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=93.76 Aligned_cols=178 Identities=14% Similarity=0.168 Sum_probs=120.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|+..|+.++--.+.+-+++++.|.+|++|.+...-- + .....+.-+++.|+
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD------------~--------~~tsaCQfTY~aHk------- 784 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD------------E--------IGTSACQFTYQAHK------- 784 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC------------c--------cccceeeeEhhhcc-------
Confidence 46889999888777788889999999999999873211 0 01223556788999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
.+|.++-|. .+-++++ +.|+.|.+||.--++........
T Consensus 785 -----k~i~~igfL--~~lr~i~--ScD~giHlWDPFigr~Laq~~da-------------------------------- 823 (1034)
T KOG4190|consen 785 -----KPIHDIGFL--ADLRSIA--SCDGGIHLWDPFIGRLLAQMEDA-------------------------------- 823 (1034)
T ss_pred -----Ccccceeee--eccceee--eccCcceeecccccchhHhhhcC--------------------------------
Confidence 889999997 5544544 45789999998766543321110
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.. .+....|.++. +-+...+.+| ...+|+++|.+..+- ...+.+ .+-.+.
T Consensus 824 ------------pk------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kV--cna~~P 875 (1034)
T KOG4190|consen 824 ------------PK------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW-TCELKV--CNAPGP 875 (1034)
T ss_pred ------------cc------------cCCCceeEecc-cCcchheeeeccchhhheeeecccccc-eeeEEe--ccCCCC
Confidence 00 12233344443 2244455444 788999999884432 221111 134566
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
+..+++++..+.| +.++.+-.+|.|.+.|.+++..+
T Consensus 876 na~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 876 NALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred chheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee
Confidence 7789999999999 99999999999999999999654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-06 Score=87.95 Aligned_cols=189 Identities=10% Similarity=0.112 Sum_probs=105.9
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCC---CCCCC-------cccceEEEEEecCCCcEEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP---SNMDD-------LTEVITSAEFHPIYCNLLAYS 286 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~-------~~~~v~~v~~~p~~~~~l~~~ 286 (501)
.....+++.++++.|+++ .++.|+.+|.. .+.. .++.... ....+ .-.....++++|++..++++.
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~-~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFV-NETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecC-CCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 345678999988877665 56889999987 3332 2211000 00000 012346899999543777777
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccC--CCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEEEEEeeCCCCce
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRMDSTPV 362 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~lwd~~~~~~~~ 362 (501)
+.++.|++||..++.. ..+.+..... .........-.....++++|+++.|..+ . ++.|++||+.+ +..
T Consensus 702 ~~~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~- 774 (1057)
T PLN02919 702 AGQHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGS- 774 (1057)
T ss_pred CCCCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcE-
Confidence 8889999999887643 1222100000 0000000011345779999999866655 3 38999999875 332
Q ss_pred eEeecccccc-ccccccCCC------CCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 363 ATFKIHEHLR-PKLCDLYNN------DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 363 ~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
..+.+..... .....+... ........++++++|.++++-+.+++|++||..++
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 1111100000 000000000 00001157999999999999999999999999876
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-06 Score=79.22 Aligned_cols=263 Identities=11% Similarity=0.076 Sum_probs=160.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
-++..++|| |.|.+|++....+ |.+|.-.........
T Consensus 33 ~p~~~~~~S--P~G~~l~~~~~~~-V~~~~g~~~~~l~~~---------------------------------------- 69 (561)
T COG5354 33 WPVAYVSES--PLGTYLFSEHAAG-VECWGGPSKAKLVRF---------------------------------------- 69 (561)
T ss_pred cchhheeec--Ccchheehhhccc-eEEccccchhheeee----------------------------------------
Confidence 668889998 8899988887654 889976654311111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c---------------CCeEEEEECCCCCeeeeeee
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~ 257 (501)
. ...|..+.|+|.+++|.+= . ++.+.+||+. .+.++..+
T Consensus 70 ----------------------~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-sg~iv~sf- 124 (561)
T COG5354 70 ----------------------R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA-SGMIVFSF- 124 (561)
T ss_pred ----------------------e-cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc-CceeEeec-
Confidence 1 1346667778887777762 2 2358999999 55555432
Q ss_pred cCCCCCCCcccc--eE-EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEE
Q 010801 258 MKPSNMDDLTEV--IT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (501)
Q Consensus 258 ~~~~~~~~~~~~--v~-~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 334 (501)
.....+ .+ -+.|+-+. +++|-. ....++++++ +.+......+.+.. ..|....
T Consensus 125 ------~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~---------------~gi~dFs 180 (561)
T COG5354 125 ------NGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP---------------VGILDFS 180 (561)
T ss_pred ------cccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhhccc---------------cceeeEE
Confidence 222222 33 67788887 666544 3457999998 54433222222222 4688889
Q ss_pred EeeCC--CEEEE------EcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe---
Q 010801 335 FANDG--QHLLS------RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--- 403 (501)
Q Consensus 335 ~sp~~--~~l~~------~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--- 403 (501)
|+|.| ..|+. +....+++|.+.. +..+.+-.-..... ..+.|.+.|++|+.--
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~lfk~~~---------------~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKNLFKVSG---------------VQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccC-CCeeeeeeeEeecc---------------cEEEEecCCceEEEEEEEe
Confidence 99864 34443 2238899999974 55443322111110 4789999998876321
Q ss_pred --------CCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCC
Q 010801 404 --------YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSS 474 (501)
Q Consensus 404 --------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~ 474 (501)
....++|+++..... .......++|...+|.|..+..- +++|-.+.. .+++....+. ....++
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~-----vi~g~~pa~~s~~~lr~Nl~-~~~Pe~ 316 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFA-----VISGYMPASVSVFDLRGNLR-FYFPEQ 316 (561)
T ss_pred eecccceeccceEEEEeeccccc--ceeccccccceeeeecccCCcee-----EEecccccceeecccccceE-EecCCc
Confidence 135688888874322 22226689999999999644433 666666666 6665554432 233444
Q ss_pred CeEEEEEccCCCEEEEee
Q 010801 475 KLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 475 ~i~~~~~sp~~~~la~~~ 492 (501)
+=+.+-|+|.++++.+++
T Consensus 317 ~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 317 KRNTIFFSPHERYILFAG 334 (561)
T ss_pred ccccccccCcccEEEEec
Confidence 455677788887777765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.5e-08 Score=79.96 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=58.4
Q ss_pred ceeEEEEeeCCCEE-EEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCC
Q 010801 329 SISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS 405 (501)
Q Consensus 329 ~i~~~~~sp~~~~l-~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~d 405 (501)
.|.+++-+|..+.+ ++|++ |.+-+||.+....+...+..|...+ +.+.|+| ++..|+++++|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i---------------~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI---------------WEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh---------------hheeccCCCchheeEecCC
Confidence 48899999976555 45654 9999999987555666677888766 7899999 57889999999
Q ss_pred CeEEEEecCC
Q 010801 406 NLLRIFSHGV 415 (501)
Q Consensus 406 g~i~iwd~~~ 415 (501)
|.+.-||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999875
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=87.44 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=111.1
Q ss_pred EEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceee
Q 010801 232 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (501)
Q Consensus 232 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 311 (501)
.+.+|-+..|-+-|++++-+. .+. ....|.++.|...+ +++..|+.+|.|..+|++.+.... .+.
T Consensus 227 hfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~----~~~ 291 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGN----GWC 291 (425)
T ss_pred eecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCC----Ccc
Confidence 344557778888888843321 133 56678999999887 999999999999999999863221 111
Q ss_pred cccccCCCcceeeecccceeEEEEee-CCCEEEEEc-CCcEEEEEeeCCCCc---eeEeeccccccccccccCCCCCcce
Q 010801 312 DAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFD 386 (501)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (501)
. .---|...|+++..-. ++++|.+.+ +|+|++||++. .+. +.++.||......
T Consensus 292 a---------~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~------------ 349 (425)
T KOG2695|consen 292 A---------QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY------------ 349 (425)
T ss_pred e---------EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc------------
Confidence 1 0123567888888776 677777665 59999999986 666 8889999775422
Q ss_pred eeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 387 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 387 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
.-+...+....+++++.|...|||.++.+ .+..+++
T Consensus 350 -l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tip 385 (425)
T KOG2695|consen 350 -LPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIP 385 (425)
T ss_pred -cccccccccceEEEccCeeEEEEEecccC-ceeeccC
Confidence 24666777889999999999999999988 3434444
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.5e-08 Score=86.15 Aligned_cols=160 Identities=12% Similarity=0.130 Sum_probs=97.6
Q ss_pred EEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
..+..++++++++++ .+....++++....+..+.++.. .+. ..-+++.+..+. .....+..-|.++-+|+-+-
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~---~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVP---KRPTAISFIRED-TSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecc---cCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence 345568889899988 77776677666333212221111 011 122334444443 33333333333333333221
Q ss_pred cccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeE-eecccccccccccc
Q 010801 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDL 378 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~ 378 (501)
.. .....+-||-..+..++++||+++|++++ |..|++-.... -..+.. .-||...+
T Consensus 140 ~~---------------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV------ 197 (390)
T KOG3914|consen 140 DS---------------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV------ 197 (390)
T ss_pred cc---------------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe------
Confidence 00 11122346788999999999999999996 69999987753 333333 35688876
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 379 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
..++.-++ ..|++||.|++|++||+.+++.+
T Consensus 198 ---------S~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 198 ---------STISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ---------eeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 46777654 56899999999999999999766
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-05 Score=71.46 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=134.9
Q ss_pred EEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 37 ~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
++.|.+ +|.++++-...+.|..|+..+++. ..+.. ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------~~~~~--------------~~ 41 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------EVIDL--------------PG 41 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------EEEES--------------SS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------EEEec--------------CC
Confidence 578888 677777766789999999887643 11111 22
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
...+++.. ++ ..|+.+...+ +.++|..+++...+.....
T Consensus 42 ~~G~~~~~-~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~-------------------------------------- 80 (246)
T PF08450_consen 42 PNGMAFDR-PD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD-------------------------------------- 80 (246)
T ss_dssp EEEEEEEC-TT-SEEEEEETTC-EEEEETTTTEEEEEEEEET--------------------------------------
T ss_pred CceEEEEc-cC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC--------------------------------------
Confidence 55666651 34 5666666554 5555988876554432100
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC--------CeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
-.......+.+++.|+|++.++. .. +.|..++.. ++.... ...
T Consensus 81 ------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~ 132 (246)
T PF08450_consen 81 ------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADG 132 (246)
T ss_dssp ------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEE
T ss_pred ------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecC
Confidence 01135677899999999977774 22 446666655 332221 112
Q ss_pred ccceEEEEEecCCCcEEE-EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 267 TEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
-...+.++|+|++ +.|+ +-+..+.|..+++..........+.+.. +..-.+....+++..+|++.++.
T Consensus 133 ~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 133 LGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp ESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEE
T ss_pred cccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEE
Confidence 3456899999999 6554 5667889999998754321111122211 00011247889999999877765
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc-CCCcEEEE
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFAT 401 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s 401 (501)
- .+.|.++|.+ ++.+..+....... ++++|. ++.+.|..
T Consensus 202 ~~~~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 202 WGGGRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYV 242 (246)
T ss_dssp ETTTEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEE
T ss_pred cCCCEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEE
Confidence 4 4999999975 88888777653322 789994 56555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-05 Score=68.33 Aligned_cols=177 Identities=16% Similarity=0.133 Sum_probs=104.4
Q ss_pred eEEEEec-CCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCC-cccceEEEEEecCCCcEEEEEeCC--------C
Q 010801 221 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G 290 (501)
Q Consensus 221 v~~l~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d--------g 290 (501)
...+++. +++ .++.+..+.+.++|.. .++...+.... ... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~-~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGIAVVDPD-TGKVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCEEEEETT-TTEEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCC-EEEEEEcCceEEEecC-CCcEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5667777 665 5555533445555888 44433332211 112 34567899999999 877766543 5
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCcee---Ee
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA---TF 365 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~---~~ 365 (501)
.|..++.. ++.. ..... -...+.++|+|+++.|...+ . +.|..+++...+..+. .+
T Consensus 116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence 57777766 3321 22222 24578999999999887653 3 8899999875333222 12
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
........ ..-.+++..+|++.++.-..+.|.+++.+ |+ +...+......+++++|.
T Consensus 177 ~~~~~~~g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 177 IDFPGGPG------------YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-LLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EE-SSSSC------------EEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-EEEEEE-SSSSEEEEEEE
T ss_pred EEcCCCCc------------CCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-EEEEEcCCCCCEEEEEEE
Confidence 11111100 00479999999998888889999999987 53 335554444466666664
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-06 Score=83.78 Aligned_cols=258 Identities=16% Similarity=0.168 Sum_probs=162.0
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...-.++.|+|.| +||.|+. ..|.|-|..+-+ .+..+.-|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q---------------------------~iqsie~h~---------- 55 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQ---------------------------LIQSIELHQ---------- 55 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhh---------------------------hhhccccCc----------
Confidence 4447889999977 6888875 478888866433 446677787
Q ss_pred cccceeEEEEeecC--------C--CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 112 IEEKINRVRWCAAP--------N--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 112 ~~~~V~~v~~~~~~--------~--~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..|+.|+|.|.+ . .-+|+++.-.|.|.+||...+..+..+
T Consensus 56 --s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l---------------------------- 105 (1062)
T KOG1912|consen 56 --SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL---------------------------- 105 (1062)
T ss_pred --cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh----------------------------
Confidence 889999998632 1 124555667799999998876543322
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC---CCC-EEEEE-cCCeEEEEECCCCCeeeeee
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCE-TFVSA-DDLRINLWNLEISDQCFNIV 256 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~ 256 (501)
..|..++..++|-+ +.+ .|++- ...++.+|+..+++...+
T Consensus 106 ---------------------------------~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-- 150 (1062)
T KOG1912|consen 106 ---------------------------------SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-- 150 (1062)
T ss_pred ---------------------------------cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--
Confidence 56677778888854 443 44444 788999999996666554
Q ss_pred ecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc---ccceeecccccCC-Ccceeee--c----
Q 010801 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHG-SKSFFTE--I---- 326 (501)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~--h---- 326 (501)
.........|+.+.|-..+.+..-+..|.+.+-+.-..+.... ..++-..|.+.+. .+..-.+ +
T Consensus 151 ------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 151 ------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred ------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 2333455677889987767777777788887776543322211 1122222111000 0000000 0
Q ss_pred -----ccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC--cE
Q 010801 327 -----IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LH 398 (501)
Q Consensus 327 -----~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~ 398 (501)
......++|+|.-+.++-.. -..+.++|++. ..++.......+.. .-+.+-|++ ..
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDA 288 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcce
Confidence 01123456778655444333 37899999986 77777776555533 246777765 46
Q ss_pred EEEEeCCCeEEEEecCC
Q 010801 399 FATGSYSNLLRIFSHGV 415 (501)
Q Consensus 399 l~s~~~dg~i~iwd~~~ 415 (501)
|+++-.||.+.||-.+.
T Consensus 289 LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEecCCeEEEEEeec
Confidence 89999999999997664
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.6e-07 Score=74.18 Aligned_cols=229 Identities=10% Similarity=-0.041 Sum_probs=135.7
Q ss_pred CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
.+|+.| ..|...+|...+.....++ ...|...|+-+.=.-+...-+..++.|.++++.++..+... .
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~-------cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----~- 152 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQ-------CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----F- 152 (344)
T ss_pred cEEEeccccceeeeecccCcccceee-------ecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----c-
Confidence 477777 9999999999855544443 22333332222111121134667788999999988765432 1
Q ss_pred eecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
..|.. .-.+.++++++|++++++.+| ..|.+|.+..++..+..+......- .- .
T Consensus 153 -~~h~~-----------~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D----------~g---F 207 (344)
T KOG4532|consen 153 -AVHNQ-----------NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD----------HG---F 207 (344)
T ss_pred -eeecc-----------ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC----------Cc---e
Confidence 11000 123789999999999998776 9999999986555444322221111 11 5
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE----EEecccCcccceeeccCCccccCccceeeeecccceeecccc-
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI----TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS- 463 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~- 463 (501)
+.+|+.....+|++..||++.|||+.....+.. +-..|.+.++.+.|++...-.+ + +.+-......+-+..
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL--L--f~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL--L--FISEHFSRVHVVDTRN 283 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE--E--EEecCcceEEEEEccc
Confidence 789999999999999999999999987544322 2345788899999987422221 0 222221111222111
Q ss_pred ----CCccc----cccc-CCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 464 ----GHHEL----SYNL-SSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 464 ----~~~~~----~~~~-~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+.+.. ...| ++.|..-.|+.++..+-+.++..++=|+
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~n 329 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYN 329 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccchhhheee
Confidence 00000 1122 2347777788777777777766655554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=78.66 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=60.4
Q ss_pred cceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 219 FNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
..|.+++-+|..+.+ ++| +||.+-+||.+....+.. .+..|...|+.+-|+|..+..|+++++||.+..||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 348889888866555 556 999999999994433322 26789999999999999889999999999999999
Q ss_pred ccC
Q 010801 297 MRQ 299 (501)
Q Consensus 297 ~~~ 299 (501)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-06 Score=71.11 Aligned_cols=183 Identities=11% Similarity=0.140 Sum_probs=106.3
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
.=+-++||||+.+||.+...|+|++||+.+.+...+. .++... ....
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~---------------------------p~~~~~------~d~~ 91 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP---------------------------PAMSFP------GDLS 91 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC---------------------------cccccC------Cccc
Confidence 3578999999999999999999999999875442000 011000 0112
Q ss_pred cceeEEEEeecC-C---CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 114 EKINRVRWCAAP-N---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 114 ~~V~~v~~~~~~-~---~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|-.+.|.... + ...|++-..+|.++-|-+..+......+
T Consensus 92 ~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e----------------------------------- 136 (282)
T PF15492_consen 92 DAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE----------------------------------- 136 (282)
T ss_pred cceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee-----------------------------------
Confidence 567777776311 1 2246666677777777653322111100
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCC----------eEEEEECCCCCeeeeeee
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL----------RINLWNLEISDQCFNIVD 257 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~----------~i~iwd~~~~~~~~~~~~ 257 (501)
...-.+...+...|.++.++|..++|+.| ... -+.-|.+-....-.+.+.
T Consensus 137 ------------------~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 137 ------------------NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred ------------------eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 00001113346678888888877777664 211 245565442221111110
Q ss_pred -----------------cCCC----CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 258 -----------------MKPS----NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 258 -----------------~~~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
+... ........|..+..+||| ++|++...+|.|.+|++.+-++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhh
Confidence 0000 012235678999999999 99999999999999999876544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-08 Score=98.16 Aligned_cols=202 Identities=13% Similarity=0.181 Sum_probs=143.1
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
++..+.|+.|+ +.-+|++|+ .+.++|+.|+..|.|+++++.+|......
T Consensus 1091 Fr~w~~frd~~------------~~fTc~afs--~~~~hL~vG~~~Geik~~nv~sG~~e~s~----------------- 1139 (1516)
T KOG1832|consen 1091 FRSWRSFRDET------------ALFTCIAFS--GGTNHLAVGSHAGEIKIFNVSSGSMEESV----------------- 1139 (1516)
T ss_pred cccchhhhccc------------cceeeEEee--cCCceEEeeeccceEEEEEccCccccccc-----------------
Confidence 44556677777 889999998 77889999999999999999988744322
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--c-CCeEEEEECC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLE 247 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~-d~~i~iwd~~ 247 (501)
.+|.+.|+-+.-+.+|..+++. . .--..+|+..
T Consensus 1140 --------------------------------------------ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1140 --------------------------------------------NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred --------------------------------------------cccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 6899999999999999888774 3 3367899988
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
........ + ..-.++.|+... ..-+.|+......+||+.++..+.. .+.. . .+..
T Consensus 1176 s~~~~~Hs-------f----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t---ylt~-~---------~~~~ 1230 (1516)
T KOG1832|consen 1176 STGGPRHS-------F----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT---YLTD-T---------VTSS 1230 (1516)
T ss_pred cccCcccc-------c----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHH---hcCc-c---------hhhh
Confidence 65544432 1 123578888765 5556666667899999999876642 2222 0 0011
Q ss_pred cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
..-+.+.|+|+..+++-- | .+||++. .+.++.|...... ..-.|+|.|..++..+.
T Consensus 1231 y~~n~a~FsP~D~LIlnd--G--vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE--- 1286 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLILND--G--VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE--- 1286 (1516)
T ss_pred hhccccccCCCcceEeeC--c--eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech---
Confidence 233678899988877642 2 5899986 4666666544322 25679999999988876
Q ss_pred EEEEecCCCCc
Q 010801 408 LRIFSHGVGSA 418 (501)
Q Consensus 408 i~iwd~~~~~~ 418 (501)
|||+.+.+.
T Consensus 1287 --IwD~RTF~l 1295 (1516)
T KOG1832|consen 1287 --IWDMRTFKL 1295 (1516)
T ss_pred --hhhhHHHHH
Confidence 899987633
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-05 Score=68.68 Aligned_cols=242 Identities=16% Similarity=0.226 Sum_probs=137.9
Q ss_pred cceEEEEEcc-CCCEEEEEecCCc-EEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 33 DIVSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 33 ~~v~~v~~s~-~g~~latg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
.....++.+| ++..+|.+-.-|+ ..+||..+++.. +.+.. ..-..|.||-
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-------~~~~a------------~~gRHFyGHg--------- 56 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-------QRLWA------------PPGRHFYGHG--------- 56 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-------eEEcC------------CCCCEEecCE---------
Confidence 3455678888 5667777776664 567898887653 11100 1114566775
Q ss_pred ccccceeEEEEeecCCCCEEEEee-----CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s-----~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
.|+ +||++|++.- ..|.|-|||...+ ..++-+
T Consensus 57 ---------~fs--~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E------------------------------- 93 (305)
T PF07433_consen 57 ---------VFS--PDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGE------------------------------- 93 (305)
T ss_pred ---------EEc--CCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeE-------------------------------
Confidence 676 8999998863 4578889998832 222211
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcC--------CeEEEEECCCCCeeeeeee
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD--------LRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d--------~~i~iwd~~~~~~~~~~~~ 257 (501)
+ ..|.-.-..+.+.|||+.|+++.. |..++ ++.+....+..++
T Consensus 94 ---------------------------~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld 144 (305)
T PF07433_consen 94 ---------------------------F-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLD 144 (305)
T ss_pred ---------------------------e-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEe
Confidence 1 334444455778889877777421 33333 2222222222111
Q ss_pred cCC------CCC--CCcccceEEEEEecCCCcEEEEEeCCCe-------EEEEEccCCcccccccceeecccccCCCcce
Q 010801 258 MKP------SNM--DDLTEVITSAEFHPIYCNLLAYSSSRGF-------VRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 258 ~~~------~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~-------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
... ..+ ..|...|+.+++.++| ..++..-..|. |-+++.... . ..+.. +...
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~------p~~~ 211 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPA------PEEQ 211 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccC------ChHH
Confidence 111 124 4477789999999998 55544433332 223322211 1 11111 0001
Q ss_pred eeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
.....+.+-+|++++++.++++.+ .+.+.+||..+ ++.+....-.+. ..++-.+++ +++
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-f~~ 272 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-FLV 272 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-eEE
Confidence 122346899999999999888765 39999999986 777666554433 467776666 666
Q ss_pred EEeCCCe
Q 010801 401 TGSYSNL 407 (501)
Q Consensus 401 s~~~dg~ 407 (501)
+.+. |.
T Consensus 273 ssG~-G~ 278 (305)
T PF07433_consen 273 SSGQ-GQ 278 (305)
T ss_pred eCCC-cc
Confidence 5554 44
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-05 Score=74.64 Aligned_cols=275 Identities=14% Similarity=0.098 Sum_probs=142.1
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
.+..+++++.+|.|.-+|..+|+.. ++ ..+.+.- ...+..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~-----------------------W~--~~~~~~~--------------~~~p~v- 103 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL-----------------------WR--VDLDERL--------------SGGVGA- 103 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe-----------------------ee--ecCCCCc--------------ccceEE-
Confidence 4668888899999999999999884 11 1111110 112233
Q ss_pred ecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 123 ~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
++..++.++.++.+..+|..+|+.............. .....+ .++. + ..++.+..+|..
T Consensus 104 ---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---p~v~~~-----------~v~v-~--~~~g~l~a~d~~ 163 (377)
T TIGR03300 104 ---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP---PLVANG-----------LVVV-R--TNDGRLTALDAA 163 (377)
T ss_pred ---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC---CEEECC-----------EEEE-E--CCCCeEEEEEcC
Confidence 2456777778888888888887766554433322100 000000 1111 1 124556666655
Q ss_pred CceeeeeeEeecCCcccce-----EEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc--cc---e-
Q 010801 203 NSVHARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I- 270 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---v- 270 (501)
.... +..+ ......+ .+.... + ..++.+ .++.+..+|.+++...... ... ...+.. .. +
T Consensus 164 tG~~---~W~~-~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~-~~~--~~~g~~~~~~~~~~~ 234 (377)
T TIGR03300 164 TGER---LWTY-SRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ-RVA--LPKGRTELERLVDVD 234 (377)
T ss_pred CCce---eeEE-ccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee-ccc--cCCCCCchhhhhccC
Confidence 4221 1111 0000000 011111 2 356667 8899999998855433321 000 000000 00 0
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
....+ .+ ..+++++.+|.+..+|..+++.. +.. .. ....... .++..++.+ .+|.
T Consensus 235 ~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~------W~~-~~------------~~~~~p~--~~~~~vyv~~~~G~ 290 (377)
T TIGR03300 235 GDPVV--DG-GQVYAVSYQGRVAALDLRSGRVL------WKR-DA------------SSYQGPA--VDDNRLYVTDADGV 290 (377)
T ss_pred CccEE--EC-CEEEEEEcCCEEEEEECCCCcEE------Eee-cc------------CCccCce--EeCCEEEEECCCCe
Confidence 11112 23 56777888999999999988643 322 00 0111222 234455554 4699
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
++.+|..+ ++.+........... ..... .+..|++++.+|.|+++|..+++.+ ..++.+..
T Consensus 291 l~~~d~~t-G~~~W~~~~~~~~~~--------------ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~~~~~~ 351 (377)
T TIGR03300 291 VVALDRRS-GSELWKNDELKYRQL--------------TAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARLKTDGS 351 (377)
T ss_pred EEEEECCC-CcEEEccccccCCcc--------------ccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEcCCC
Confidence 99999975 665544321111100 11222 3568889999999999999988444 56665543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-05 Score=77.48 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=85.3
Q ss_pred CcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
....++.+++.+.+-+.+|+| .+|.|..+.-+..+ +..+. .-......+|+.+.+..++ ..++.+..-..|.
T Consensus 123 ~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~ 196 (933)
T KOG2114|consen 123 TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITGLALRSDG-KSVLFVATTEQVM 196 (933)
T ss_pred CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCceeeEEecCC-ceeEEEEecceeE
Confidence 346778899999999999999 99999998533111 11111 0123346789999999998 6534444456799
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEee-ccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHE 369 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~-~~~ 369 (501)
+|.+...... .++.+. |..++.+.++++....++++...-+.+|+... .++-..+. ++.
T Consensus 197 ~y~l~gr~p~---~~~ld~-------------~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~k 256 (933)
T KOG2114|consen 197 LYSLSGRTPS---LKVLDN-------------NGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEK 256 (933)
T ss_pred EEEecCCCcc---eeeecc-------------CCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCe
Confidence 9998854311 122333 46788888888766546666668899999863 44444444 443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=78.63 Aligned_cols=290 Identities=17% Similarity=0.141 Sum_probs=166.6
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
|.++..|.+.|+.+.- .-.+++.+++.||.++.|.-..-......
T Consensus 2 yeksymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfV-------------------------------- 46 (558)
T KOG0882|consen 2 YEKSYMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFV-------------------------------- 46 (558)
T ss_pred cchhhcccceeeeEee---ehhheEEeeecchhhhhcCCCCccceeeh--------------------------------
Confidence 3345555577888765 35679999999999999976542222111
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-CCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
+.+ ..|-..|.+++.+.++.++.+. . |..++++|++.-. ....+ .+
T Consensus 47 -------------------------KhF-raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D-minmi-----KL 94 (558)
T KOG0882|consen 47 -------------------------KHF-RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD-MINMI-----KL 94 (558)
T ss_pred -------------------------hhh-HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc-hhhhc-----cc
Confidence 111 5788889999999999988886 5 9999999998433 22211 12
Q ss_pred CCcccceEEEEEecCCC-cEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 264 DDLTEVITSAEFHPIYC-NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~-~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
....+.+..+ .+|... ..+++. -.+|.+.++|-+...... ..+. .-|..+|..+.++|-+..
T Consensus 95 ~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---~~fk------------klH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 95 VDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---GYFK------------KLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred ccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcc---ceec------------ccccCceEEEEeeccccc
Confidence 2222222221 222210 133333 347899999977653221 1222 236789999999999998
Q ss_pred EEEEcC-CcEEEEEeeCC-----CCceeEeeccccccccccccCC-CCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 342 LLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYN-NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 342 l~~~~~-~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+++... |.|.-|..... .+....++.... +|. ..+-....++.|+|+|..+.+-+.|..|+++.+.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd-------Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD-------LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccch-------hhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 888764 99999987610 111111211111 111 0111112689999999999999999999999999
Q ss_pred CCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccC-CCeEEEEEccCCCEEEEeeC
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLS-SKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~-~~i~~~~~sp~~~~la~~~~ 493 (501)
+++.. +.+......-....-++ ..+ ..+..|- + +- ...++..+. ..-+.+.|...|++|..++-
T Consensus 232 tGklv-qeiDE~~t~~~~q~ks~---y~l---~~VelgR-R---ma----verelek~~~~~~~~~~fdes~~flly~t~ 296 (558)
T KOG0882|consen 232 TGKLV-QEIDEVLTDAQYQPKSP---YGL---MHVELGR-R---MA----VERELEKHGSTVGTNAVFDESGNFLLYGTI 296 (558)
T ss_pred cchhh-hhhhccchhhhhccccc---ccc---ceeehhh-h---hh----HHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence 98443 33322211111111111 000 0000000 0 00 001111222 23356779999999999997
Q ss_pred CeEEEEe
Q 010801 494 NSLFFHY 500 (501)
Q Consensus 494 ~~~~i~~ 500 (501)
=|+.|.+
T Consensus 297 ~gikvin 303 (558)
T KOG0882|consen 297 LGIKVIN 303 (558)
T ss_pred eeEEEEE
Confidence 7777765
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.4e-08 Score=58.06 Aligned_cols=31 Identities=19% Similarity=0.551 Sum_probs=30.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
.|.+.|++|+|+|++++||+|+.|+.|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 6899999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.6e-05 Score=70.60 Aligned_cols=318 Identities=11% Similarity=0.093 Sum_probs=152.0
Q ss_pred ccCCCEEEEEe---------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 41 DKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 41 s~~g~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
|||+++++... ..+.+.|+|+++++.. .+....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~----------------------------~l~~~~---------- 42 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT----------------------------PLTPPP---------- 42 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE----------------------------ESS-EE----------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE----------------------------ECcCCc----------
Confidence 68898888743 3467889998887531 111112
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+....|+ |+|+.++... ++.|.+++..++....+....... +..|
T Consensus 43 --~~~~~~~~s--P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~-------------------------i~nG--- 89 (353)
T PF00930_consen 43 --PKLQDAKWS--PDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPG-------------------------IYNG--- 89 (353)
T ss_dssp --TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTT-------------------------EEES---
T ss_pred --cccccceee--cCCCeeEEEe-cCceEEEECCCCCeEEecccccee-------------------------EEcC---
Confidence 568889998 7899988886 578999998877554443211000 0000
Q ss_pred cCcceEEEeccCceeeeeeEeecCCc-ccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcc-
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT- 267 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~- 267 (501)
.+-..+ ... -+.-..+-||||++.|+.. ++..|+.+.+..-. ..+.
T Consensus 90 ----------------~~dwvy-eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~-------------~~~~~ 139 (353)
T PF00930_consen 90 ----------------VPDWVY-EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS-------------PPDSQ 139 (353)
T ss_dssp ----------------B--HHH-HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES-------------SSTES
T ss_pred ----------------ccceec-cccccccccceEECCCCCEEEEEEECCcCCceEEeeccC-------------Ccccc
Confidence 000000 000 1122458899999999986 66666665543110 0000
Q ss_pred -cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-EE
Q 010801 268 -EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SR 345 (501)
Q Consensus 268 -~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~~ 345 (501)
..+..+.+-.-| .--.. -.+.++|+.+++.. .+.. ... +..-...+..+.|.++++.|+ .-
T Consensus 140 yp~~~~~~YPk~G-~~np~----v~l~v~~~~~~~~~-----~~~~-~~~------~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 140 YPEVESIRYPKAG-DPNPR----VSLFVVDLASGKTT-----ELDP-PNS------LNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp S-EEEEEE--BTT-S---E----EEEEEEESSSTCCC-----EE----HH------HHTSSEEEEEEEEEETTEEEEEEE
T ss_pred CCcccccccCCCC-CcCCc----eEEEEEECCCCcEE-----Eeee-ccc------cCCCccCcccceecCCCcEEEEEE
Confidence 123444443333 11111 14667888776532 1111 000 000135789999999999444 32
Q ss_pred --cC---CcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEc-CCC-cEEEEEeCCCeEEEEecCCCC
Q 010801 346 --DY---MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS-GDG-LHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 346 --~~---~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~-~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.+ ..+.++|..+ +....... .....+... ....|. +++ .+|.....||--+||-++...
T Consensus 203 ~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~~------------~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDAST-GETRVVLEETSDGWVDVY------------DPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp EETTSTEEEEEEEEECT-TTCEEEEEEESSSSSSSS------------SEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred cccCCCEEEEEEEECCC-CceeEEEEecCCcceeee------------cccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 22 3556667765 33322222 222222110 245554 554 455555577765555544333
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC---cccccccCCCe-EEEEEccCCCEEEEee
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH---HELSYNLSSKL-LHLAWHPTTNLIACAN 492 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~---~~~~~~~~~~i-~~~~~sp~~~~la~~~ 492 (501)
.....+....-.|..+.........+ ...+....... .+|..+.. ....+-..... ..++|||++++++..+
T Consensus 270 ~~~~~lT~G~~~V~~i~~~d~~~~~i---yf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 270 GKPRQLTSGDWEVTSILGWDEDNNRI---YFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SEEEESS-SSS-EEEEEEEECTSSEE---EEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred cceeccccCceeecccceEcCCCCEE---EEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 33344544444554433322212222 12333333344 77733222 22222222222 5899999999988655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-07 Score=54.79 Aligned_cols=38 Identities=29% Similarity=0.790 Sum_probs=34.8
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEe
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~ 143 (501)
+++.++++|. +.|++|+|+ |++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~------------~~i~~i~~~--~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS------------SSINSIAWS--PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS------------SSEEEEEEE--TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC------------CcEEEEEEe--cccccceeeCCCCEEEEEC
Confidence 4568899999 999999998 7899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00011 Score=65.06 Aligned_cols=157 Identities=15% Similarity=0.032 Sum_probs=81.5
Q ss_pred CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010801 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (501)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 308 (501)
+..++.+ .++.+..+|..++....+..... .+... ..........+ ..++++..++.|..+|+++++...
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w---- 146 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLW---- 146 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEE----
T ss_pred ccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEE----
Confidence 3345554 77899999988565544421111 01111 11222222235 778888889999999999997542
Q ss_pred eeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCc-EEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
.... ...+... .+. ....+..-....++..+++..++. +.+ |+.+ ++.+.... ....
T Consensus 147 ~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~--------------- 204 (238)
T PF13360_consen 147 KYPV-GEPRGSS-PIS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGI--------------- 204 (238)
T ss_dssp EEES-STT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-E---------------
T ss_pred Eeec-CCCCCCc-cee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCc---------------
Confidence 1111 0000000 000 001122222223454444444564 555 8876 55332222 1111
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
......++..|+.++.++.|..||+.+++.
T Consensus 205 -~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 205 -YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 122456777888888999999999999843
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=92.28 Aligned_cols=216 Identities=14% Similarity=0.236 Sum_probs=141.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|+...+|++|+-+.+.|+.|+..|.|++|++.+|... ....+|.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------~s~ncH~-------- 1143 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------ESVNCHQ-------- 1143 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------ccccccc--------
Confidence 46788999999999999999999999999999988753 5577888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|+.|.=+ .+|..+++.+. .--..+|+..+--
T Consensus 1144 ----SavT~vePs--~dgs~~Ltsss~S~PlsaLW~~~s~~--------------------------------------- 1178 (1516)
T KOG1832|consen 1144 ----SAVTLVEPS--VDGSTQLTSSSSSSPLSALWDASSTG--------------------------------------- 1178 (1516)
T ss_pred ----ccccccccc--CCcceeeeeccccCchHHHhcccccc---------------------------------------
Confidence 889988865 67777776542 2356788875411
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.....| ..-.++.|+...+.-+.| ......+||+.+...+...+. ...+.
T Consensus 1179 --------------------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----~~~~~ 1229 (1516)
T KOG1832|consen 1179 --------------------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----DTVTS 1229 (1516)
T ss_pred --------------------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC----cchhh
Confidence 011111 122356776654444555 556789999996554443210 01112
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
+..-....|+|+. .+++ .|| .+||.+..+.+ +.|+.. + .-..-.|+|.|..++..+
T Consensus 1230 ~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aI----h~FD~f-------------t-~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAI----HRFDQF-------------T-DYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred hhhccccccCCCc-ceEe---eCc--eeeeeccHHHH----hhhhhh-------------e-ecccccccCCCceEEeec
Confidence 2223678899997 6665 355 58999986443 444431 1 122335899998888765
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
.|||+++ .+.++....... ..+.|...|..+.
T Consensus 1286 ----EIwD~RT-F~lLh~VP~Ldq-----------------c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1286 ----EIWDMRT-FKLLHSVPSLDQ-----------------CAVTFNSTGDVMY 1317 (1516)
T ss_pred ----hhhhhHH-HHHHhcCccccc-----------------eEEEeccCccchh
Confidence 4899997 666665554443 4678877776554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.4e-06 Score=79.06 Aligned_cols=192 Identities=16% Similarity=0.179 Sum_probs=127.5
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+...+.++|++++ ++++|-|+.+|.|++++..... .+...|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHS------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----------------------------ccccccc-------
Confidence 3347889999987 7899999999999999976441 1222333
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
.. +.+|.++++||.||+|.|-.+.+.+.....
T Consensus 78 -----~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~----------------------------------- 109 (846)
T KOG2066|consen 78 -----SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQY----------------------------------- 109 (846)
T ss_pred -----cc--------ccCCceEEEecCCCcEEEeeccCCccceeE-----------------------------------
Confidence 11 368999999999999999888776543322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-----CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
....++.+++++|+ .+.+++| .-| +.++..+--+....+ .
T Consensus 110 ---------------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~ 155 (846)
T KOG2066|consen 110 ---------------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------V 155 (846)
T ss_pred ---------------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------e
Confidence 23457888999987 5678887 666 877754422221111 1
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
+..-.++|.++.|. | +++|-++.+| |++||+..++... ..+. ..+..+ ...--..+.|.++. .|
T Consensus 156 l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~----~i~~--p~~~~R-----~e~fpphl~W~~~~-~L 219 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLT----NIPP--PSQSVR-----PELFPPHLHWQDED-RL 219 (846)
T ss_pred eecCccceEEEEec--C-cEEEEecCCC-cEEEeccccceee----ccCC--CCCCCC-----cccCCCceEecCCC-eE
Confidence 44567899999998 4 7899888777 8999998875432 1111 001111 12234567777655 55
Q ss_pred EEEcCCcEEEEEee
Q 010801 343 LSRDYMNLKLWDIR 356 (501)
Q Consensus 343 ~~~~~~~i~lwd~~ 356 (501)
+.|-..+|+|..++
T Consensus 220 VIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 220 VIGWGDSVKICSIK 233 (846)
T ss_pred EEecCCeEEEEEEe
Confidence 56655688888887
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-05 Score=77.74 Aligned_cols=110 Identities=15% Similarity=0.313 Sum_probs=80.4
Q ss_pred eEEEEEccCCCEEEEEe----cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 35 VSAIEFDKTGDYLAVGD----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 35 v~~v~~s~~g~~latg~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
-+-.+|+|...++|+++ ..|.|.||- ++|+.. . -.+..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq-----------------------r--~Vt~P------------ 59 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ-----------------------R--DVTYP------------ 59 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCC-----------------------c--ccccc------------
Confidence 34467999999999886 568899885 344321 0 01111
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
-.+++++|+ |..-.|+.|-.-|.+.+|...+.+.....
T Consensus 60 ---~hatSLCWH--pe~~vLa~gwe~g~~~v~~~~~~e~htv~------------------------------------- 97 (1416)
T KOG3617|consen 60 ---VHATSLCWH--PEEFVLAQGWEMGVSDVQKTNTTETHTVV------------------------------------- 97 (1416)
T ss_pred ---eehhhhccC--hHHHHHhhccccceeEEEecCCceeeeec-------------------------------------
Confidence 225679998 55556667777899999998776543322
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..|..+|..+.|+++|..++++ .-|.|.+|....
T Consensus 98 ------------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 98 ------------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ------------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 5789999999999999999999 899999998773
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=75.74 Aligned_cols=148 Identities=18% Similarity=0.259 Sum_probs=95.7
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+.|.++.|...++++..|+++|.|.+.|+..+..- . .+ . ...--|.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------------~---------~~-~-a~rlyh~--------- 298 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------------N---------GW-C-AQRLYHD--------- 298 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC------------C---------Cc-c-eEEEEcC---------
Confidence 4677889999999999999999999999999865221 0 00 0 1111244
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|+++... ..++++|++.+.+|+|++||.+--++..
T Consensus 299 ---Ssvtslq~L-q~s~q~LmaS~M~gkikLyD~R~~K~~~--------------------------------------- 335 (425)
T KOG2695|consen 299 ---SSVTSLQIL-QFSQQKLMASDMTGKIKLYDLRATKCKK--------------------------------------- 335 (425)
T ss_pred ---cchhhhhhh-ccccceEeeccCcCceeEeeehhhhccc---------------------------------------
Confidence 779988776 2367899999999999999988655422
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEE--ecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+..| .+|.+.-.-+- ..+....++++ +|...+||.++ .+..+..+..+ ....+
T Consensus 336 ------------------~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~-~ghLl~tipf~---~s~~e 392 (425)
T KOG2695|consen 336 ------------------SVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD-SGHLLCTIPFP---YSASE 392 (425)
T ss_pred ------------------ceeee-ecccccccccccccccccceEEEccCeeEEEEEecc-cCceeeccCCC---Ccccc
Confidence 12223 45544333332 24555566666 99999999999 55555543111 22233
Q ss_pred cceEEEEEe
Q 010801 268 EVITSAEFH 276 (501)
Q Consensus 268 ~~v~~v~~~ 276 (501)
..+.+++|.
T Consensus 393 ~d~~sv~~~ 401 (425)
T KOG2695|consen 393 VDIPSVAFD 401 (425)
T ss_pred ccccceehh
Confidence 345556554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=64.87 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=71.3
Q ss_pred CcccceEEEEecCCCCEEEEE-cCC-------eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEE-EEE
Q 010801 216 AHDFNINSISNNSDCETFVSA-DDL-------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYS 286 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~ 286 (501)
-|...|.-+++.++|..++.. ..+ -|-+++.. ..+..+.............+-+|++++++ ..+ +++
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTS 235 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEEC
Confidence 467789999999999777765 433 24444433 22332222222223455778999999998 655 555
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEE
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd 354 (501)
-.-+.+.+||..+++.. ..... ..+..++..+++ ++++...|.+...+
T Consensus 236 PrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 56789999999998654 22222 346777777666 66665556544433
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9e-05 Score=71.19 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=85.7
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...|.-=+++..+++++.|+.-|.+++|+..+++.. .....+-.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------------~~~~~~~~--------- 76 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------------------------KLKNEGAT--------- 76 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh--------------------------cccccCcc---------
Confidence 5566666777788999999999999999998887652 01111111
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.+..+..+ ++..++|.|+..|.|.++.++.+......
T Consensus 77 ---~~~~~~~vs--~~e~lvAagt~~g~V~v~ql~~~~p~~~~------------------------------------- 114 (726)
T KOG3621|consen 77 ---GITCVRSVS--SVEYLVAAGTASGRVSVFQLNKELPRDLD------------------------------------- 114 (726)
T ss_pred ---ceEEEEEec--chhHhhhhhcCCceEEeehhhccCCCcce-------------------------------------
Confidence 334444554 66777888888999999988764311110
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
.+-. .-..|...|++++|++++..+.+| ..|.|.+-.++.
T Consensus 115 ------~~t~------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 ------YVTP------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ------eecc------------ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 0000 004588999999999999999999 889988877764
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-05 Score=74.47 Aligned_cols=144 Identities=12% Similarity=-0.001 Sum_probs=97.7
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
.+.|++++ ++.|+-| .+|.|++++.. +.. .. ...|... .-+| .++++|+.||.|.|-.+-
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~--------~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KT--------NFDHSSS------ILEG-EYVASCSDDGKVVIGSLF 101 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecC-Ccc-cc--------ccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence 44555554 5688889 99999999987 322 11 2223332 5567 999999999999999888
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeC-----CCEEEEEcC-CcEEEEEeeCCCCceeE-eeccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHL 371 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-----~~~l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~ 371 (501)
+.+.. ..++- ..++.+++++|+ .+.+++|+. | +.++.-+.-+..... +....+.
T Consensus 102 ~~~~~----~~~df--------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 102 TDDEI----TQYDF--------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred CCccc----eeEec--------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 77544 33333 468999999998 456777776 6 888875432222222 2223333
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
+ .++.|. |.++|-++++| |++||+.+++.+
T Consensus 163 I---------------~~i~W~--g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 163 I---------------HSIKWR--GNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred e---------------EEEEec--CcEEEEecCCC-cEEEecccccee
Confidence 3 689994 67888888776 799999987554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00044 Score=70.79 Aligned_cols=242 Identities=14% Similarity=0.121 Sum_probs=131.9
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
+.|.++.|--+++-++.+..+|.|.+-|.++... ..-|..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------eivg~v----------- 108 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------EIVGNV----------- 108 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------eeeeec-----------
Confidence 5899999999999999999999999998876643 122221
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.+|.+++|+ ||++.++..+.++++.+-.. +...+..... ..+ ....+.....-++...+-+- | +
T Consensus 109 d~GI~aaswS--~Dee~l~liT~~~tll~mT~-~f~~i~E~~L--~~d------~~~~sk~v~VGwGrkeTqfr-g---s 173 (1265)
T KOG1920|consen 109 DNGISAASWS--PDEELLALITGRQTLLFMTK-DFEPIAEKPL--DAD------DERKSKFVNVGWGRKETQFR-G---S 173 (1265)
T ss_pred cCceEEEeec--CCCcEEEEEeCCcEEEEEec-cccchhcccc--ccc------cccccccceecccccceeee-c---c
Confidence 2789999998 88999999998888766432 1111111100 000 00001111111111000000 0 0
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-----cC-CeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DD-LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.|..+..+..... ..... ..-.+.=++++|..||+++++. .+ ..|++||.+ +. +... -...
T Consensus 174 ~gr~~~~~~~~~e--k~~~~--~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~--Lns~------se~~ 240 (1265)
T KOG1920|consen 174 EGRQAARQKIEKE--KALEQ--IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA--LNST------SEPV 240 (1265)
T ss_pred hhhhccccccccc--ccccc--hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch--hhcc------cCcc
Confidence 0000000000000 00000 0011223468999999999882 34 799999988 22 1111 1112
Q ss_pred ccceEEEEEecCCCcEEEEEeC---CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+.=.+++|-|.| .++++-.. |+.|.+|.-..-+.. .|.. + ++.....+..++|+.++..||
T Consensus 241 ~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg-----~f~l-~--------~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 241 EGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHG-----EFVL-P--------FPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred cccccceeecCCC-CeEeeeeecCCCCcEEEEecCCcccc-----cccc-C--------CcccccchheeeecCCCCcee
Confidence 2333689999998 88877543 567888874432111 1111 0 011123499999999999999
Q ss_pred EE---cC-CcEEEEEeeC
Q 010801 344 SR---DY-MNLKLWDIRM 357 (501)
Q Consensus 344 ~~---~~-~~i~lwd~~~ 357 (501)
.. .. ..|++|-+.+
T Consensus 306 v~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeecccccceEEEEEecC
Confidence 73 23 4599998753
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.3e-05 Score=66.21 Aligned_cols=78 Identities=8% Similarity=0.244 Sum_probs=61.2
Q ss_pred ccccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|...|..++|||..+ ++..++.+..|+|.|+++.... ..+..|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---------------------------ssy~a~-------- 235 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---------------------------SSYIAY-------- 235 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceee---------------------------eheecc--------
Confidence 4678899999999776 7788999999999999976432 344444
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~ 148 (501)
..+++++|.. .+..++..|-..|.|.+||++..+
T Consensus 236 -----~~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 236 -----NQIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred -----CCceeeeecc-CCcceeEEeccCceEEEEEccCCC
Confidence 5699999983 345677777799999999998643
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.1e-07 Score=86.31 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=134.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..+.|+++....+...++.|..+|.|-+-.+....-.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------------------------------------------- 93 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------------------------------------------- 93 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------------------------
Confidence 5577888774444456777888899988776653311
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-c----CCeEEEEECCCCCe-eeeeeecCCCCCCC-
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISDQ-CFNIVDMKPSNMDD- 265 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~- 265 (501)
-..+..++....++++|++ |.+.||+| + |..+.|||+.+.-. +.... .+.+
T Consensus 94 ----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~-----~fs~~ 152 (783)
T KOG1008|consen 94 ----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP-----LFSSS 152 (783)
T ss_pred ----------------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccc-----ccccc
Confidence 0011267788899999987 56778887 3 67899999984311 11111 1222
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~ 344 (501)
......+++|-.+. +++++|...+.++++|+|...... ..+. +..+..+...| .+.|+++
T Consensus 153 ~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccCccccccccCc-chhhcccccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceec
Confidence 33445688999877 889999999999999999643221 1111 23577788888 7889998
Q ss_pred EcCCcEEEEE-eeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEe-CCCeEEEEecCC
Q 010801 345 RDYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGS-YSNLLRIFSHGV 415 (501)
Q Consensus 345 ~~~~~i~lwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~-~dg~i~iwd~~~ 415 (501)
-.++.|.+|| .+.-..++..+.......+. .+..++|.|.. ..+++.+ ..++|+++++..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~-----------~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPK-----------QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCccc-----------ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8899999999 43323444444333332111 11689999953 2444444 458899999854
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00018 Score=64.49 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=57.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++|+|. +..++..++.+..|+|.|+++.......
T Consensus 194 ~~IrdlafSp~-~~GLl~~asl~nkiki~dlet~~~vssy---------------------------------------- 232 (463)
T KOG1645|consen 194 SFIRDLAFSPF-NEGLLGLASLGNKIKIMDLETSCVVSSY---------------------------------------- 232 (463)
T ss_pred hhhhhhccCcc-ccceeeeeccCceEEEEecccceeeehe----------------------------------------
Confidence 77999999952 3347888999999999999986644322
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCe
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
..+ ..+++++|.-+. .++.+| .+|.|.+||++....
T Consensus 233 ---------------------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 233 ---------------------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ---------------------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 333 688999997654 566778 899999999985443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00037 Score=71.29 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=128.0
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
...|.++.|..++..++.+ ..|.|.+-|..+... .+ ...-...|.+++|+||+ +.++..+..+++.+.+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--ei-------vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EI-------VGNVDNGISAASWSPDE-ELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce--ee-------eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEe
Confidence 3689999999999999888 999999998774332 21 23356789999999999 9999999888887654
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----------CCcEEEEEeeCCCCceeEee
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----------YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----------~~~i~lwd~~~~~~~~~~~~ 366 (501)
-. -... .. .++ ...-.+.++++-+|- .|.....+.....+......
T Consensus 138 ~~-f~~i-------~E---------------~~L-~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 138 KD-FEPI-------AE---------------KPL-DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred cc-ccch-------hc---------------ccc-ccccccccccceecccccceeeecchhhhcccccccccccccchh
Confidence 21 1111 00 011 111122233333321 11111111111111111111
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-----CCCeEEEEecCCCCcceEEEecccCcccceeeccCCcc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 441 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 441 (501)
.+... +.++|--||+++|+.. ....|+|||.+ | .+..+-......-.++++.| .|
T Consensus 194 ~~~~~----------------~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkP--sg 253 (1265)
T KOG1920|consen 194 QDDHK----------------TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKP--SG 253 (1265)
T ss_pred hccCC----------------ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecC--CC
Confidence 22222 5799999999998732 23789999987 3 33333333344445677777 44
Q ss_pred ccCccceeeeec---ccce-eeccccCCccc-----ccccCCCeEEEEEccCCCEEEE---eeCCe-EEEEe
Q 010801 442 RRSSLSNLTRGL---YRQA-HENSSSGHHEL-----SYNLSSKLLHLAWHPTTNLIAC---ANGNS-LFFHY 500 (501)
Q Consensus 442 ~~~~~~~l~~~~---~~~~-~iw~~~~~~~~-----~~~~~~~i~~~~~sp~~~~la~---~~~~~-~~i~~ 500 (501)
.. +++-. .++. .++..++.... ......+|..++|+.++..||+ ...+. +++|+
T Consensus 254 s~-----iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 254 SL-----IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred Ce-----EeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 44 34332 2222 44433322211 1122334899999999999998 44444 88886
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00072 Score=63.73 Aligned_cols=276 Identities=14% Similarity=0.142 Sum_probs=131.2
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhh-------h--cccc--------ccCCCCceeeEee
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELE-------K--QMDF--------TSTSHPEYRYKTE 96 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~--~~~~--------~~~~~~~~~~~~~ 96 (501)
.|+.+.|+++..-||+|...|.|.||.+...+..+. ...-..++ . .... ...-+..+.+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 489999999988999999999999999887654310 00000000 0 0000 0000123444455
Q ss_pred eccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcccc
Q 010801 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (501)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (501)
++... ++|++++.+ |-.+++.|..+|.+.|.|+++...+.......
T Consensus 82 ~~~~~------------g~vtal~~S---~iGFvaigy~~G~l~viD~RGPavI~~~~i~~------------------- 127 (395)
T PF08596_consen 82 LDAKQ------------GPVTALKNS---DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE------------------- 127 (395)
T ss_dssp E---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------
T ss_pred eeccC------------CcEeEEecC---CCcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------
Confidence 55455 899999986 67799999999999999998877655421110
Q ss_pred CCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEec-----CCC---CEEEEE-cCCeEEEEECC
Q 010801 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----SDC---ETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~-----~~~---~~l~~~-~d~~i~iwd~~ 247 (501)
..........++++.|. .|+ -.+++| ..|.+.+|.+.
T Consensus 128 ----------------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 128 ----------------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp ------------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ----------------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 00002234456666664 222 356778 88999998765
Q ss_pred C-CCeee--eeeecCCCCCCCcccceEEEE-EecCCC-------------------cEEEEEeCCCeEEEEEccCCcccc
Q 010801 248 I-SDQCF--NIVDMKPSNMDDLTEVITSAE-FHPIYC-------------------NLLAYSSSRGFVRLVDMRQSALCD 304 (501)
Q Consensus 248 ~-~~~~~--~~~~~~~~~~~~~~~~v~~v~-~~p~~~-------------------~~l~~~~~dg~i~~wd~~~~~~~~ 304 (501)
. ....+ ..... ...+.+.|..+. ++.+.+ .-+++...+..++++...+.+...
T Consensus 174 p~~~g~f~v~~~~~----~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~ 249 (395)
T PF08596_consen 174 PSSNGRFSVQFAGA----TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH 249 (395)
T ss_dssp E-GGG-EEEEEEEE----E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE
T ss_pred cCCCCceEEEEeec----cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc
Confidence 2 11111 11110 123444555444 322210 124444557789999887765432
Q ss_pred cccceeecccccCCCcceeeecccceeEEEEe-----eCCCEEEEE-cCCcEEEEEeeCCCCceeEeecccccccccccc
Q 010801 305 HSARILRDAAESHGSKSFFTEIIASISDIKFA-----NDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 378 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-----p~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 378 (501)
+.++. ......+.+- ..+..|++- .+|.|++|.+.. -+.+..+......-...
T Consensus 250 ---K~~~~--------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~--- 308 (395)
T PF08596_consen 250 ---KSFDD--------------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSRR--- 308 (395)
T ss_dssp ---EE-SS---------------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHH---
T ss_pred ---eeecc--------------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCcccccc---
Confidence 22222 1123333442 234445543 569999999974 66666665432211000
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 379 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
....+++++|..++-.+.. .+.++.
T Consensus 309 --------~~~ssis~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 309 --------LSSSSISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp --------HTT-EE-TTS-EEEE-SSS-EEEEEE
T ss_pred --------ccccEECCCCCEEEEeCcc-cEEEEE
Confidence 0357778888877655443 343443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00045 Score=68.09 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=98.5
Q ss_pred CEEEE-E-cCC----eEEEEECCCC-----CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 231 ETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 231 ~~l~~-~-~d~----~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
.+|++ | +++ .+++|+++.. .+++....+-+...+....++.+++++.+- +.+|+|-.+|.|..+.-.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcc
Confidence 45555 4 444 6999998743 233322222222234446788999999997 9999999999999884221
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE-EEEEcCCcEEEEEeeCCCCc-eeEeeccccccccccc
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTP-VATFKIHEHLRPKLCD 377 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~~~~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~ 377 (501)
.+ ++..+.--.| .-..+|+++++..+++- +.+++-..|.+|.+.. ..+ ...+..+....
T Consensus 157 ~R--Drgsr~~~~~-----------~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~l----- 217 (933)
T KOG2114|consen 157 LR--DRGSRQDYSH-----------RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISL----- 217 (933)
T ss_pred hh--ccccceeeec-----------cCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCccc-----
Confidence 11 0000111110 11468999999999886 3444457899999973 332 33354444432
Q ss_pred cCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe-cccC
Q 010801 378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKN 428 (501)
Q Consensus 378 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 428 (501)
.+.++++....+++++. ..+.+|+.+.. .....+. +|+.
T Consensus 218 ----------nCss~~~~t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g~kk 257 (933)
T KOG2114|consen 218 ----------NCSSFSDGTYQFICAGS-EFLYFYDSDGR-GPCFAFEVGEKK 257 (933)
T ss_pred ----------eeeecCCCCccEEEecC-ceEEEEcCCCc-ceeeeecCCCeE
Confidence 56777765553444443 36899998743 3445555 4443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00028 Score=66.87 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=62.2
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
-.....|.+++++|+...++.| .||.|.+||...+-. . .....-.++.++|+|+| .++++|+..|.+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-~---------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ 324 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-L---------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQ 324 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-e---------eeeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence 3567889999999999999999 999999999883321 1 11233457899999999 9999999999999
Q ss_pred EEEccCCc
Q 010801 294 LVDMRQSA 301 (501)
Q Consensus 294 ~wd~~~~~ 301 (501)
+||+.-+.
T Consensus 325 ~FD~ALsp 332 (545)
T PF11768_consen 325 CFDMALSP 332 (545)
T ss_pred EEEeecCc
Confidence 99997654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00018 Score=68.05 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=56.8
Q ss_pred ccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 327 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 327 ~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
...+.+++++|+.+.++.| .||.|.+||... + +..+.... .++ +.++|+|+|.++++|+..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~-~~P--------------~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAE-FIP--------------TLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeec-ccc--------------eEEEEcCCCcEEEEEcCC
Confidence 5689999999999888877 579999999864 2 22222122 221 689999999999999999
Q ss_pred CeEEEEecCCC
Q 010801 406 NLLRIFSHGVG 416 (501)
Q Consensus 406 g~i~iwd~~~~ 416 (501)
|.+.+||+.-.
T Consensus 321 GelQ~FD~ALs 331 (545)
T PF11768_consen 321 GELQCFDMALS 331 (545)
T ss_pred ceEEEEEeecC
Confidence 99999999765
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.1e-05 Score=74.85 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=103.5
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.|.-++. +++.+.+|...|+|.+-|..+.+.+...
T Consensus 179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~----------------------------------------- 213 (1118)
T KOG1275|consen 179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTF----------------------------------------- 213 (1118)
T ss_pred ceEEEEe----cCcEEEeecccceEEeecCCcCceeeee-----------------------------------------
Confidence 3666663 6788888889999999998887655443
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--c--------CCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--------DLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..|.+.|.++.. .|+.|+++ + |..|++||++.-+.... +.
T Consensus 214 --------------------~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--------I~ 263 (1118)
T KOG1275|consen 214 --------------------DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--------IQ 263 (1118)
T ss_pred --------------------eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC--------cc
Confidence 688888876654 56677763 3 55689999994443221 22
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
-+.++ .-+.|+|.-...+++++..|...+-|..+-....- .++.. ......+..+.++++|+.++.
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v-----------~p~~s~i~~fDiSsn~~alaf 329 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA--GVKMV-----------NPNGSGISAFDISSNGDALAF 329 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc--ceeEE-----------ccCCCcceeEEecCCCceEEE
Confidence 22222 56788998778899999999999998433211100 11111 011345999999999999999
Q ss_pred Ec-CCcEEEEEe
Q 010801 345 RD-YMNLKLWDI 355 (501)
Q Consensus 345 ~~-~~~i~lwd~ 355 (501)
|+ +|.|.+|.-
T Consensus 330 gd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 330 GDHEGHVNLWAD 341 (1118)
T ss_pred ecccCcEeeecC
Confidence 96 499999973
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-06 Score=80.68 Aligned_cols=211 Identities=15% Similarity=0.193 Sum_probs=127.2
Q ss_pred cccceEEEEEccCC--CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
....+.|++++-+. .++++|..+|.|.+-.+....- ...-...+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------------Ss~E~tp~~a------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------------SSAEVTPGYA------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------------ccceeccccc-------
Confidence 35678888887644 5789999999999887654321 0011223344
Q ss_pred ccccccceeEEEEeecCCCCEEEEee----CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s----~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
...++++|++ -|...||+|- .|-.+.|||+.++-......
T Consensus 103 -----r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~------------------------------ 146 (783)
T KOG1008|consen 103 -----RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES------------------------------ 146 (783)
T ss_pred -----cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCccc------------------------------
Confidence 6789999984 4666777762 56679999998763110000
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
|. +..+......+++|-.+.+++.+| ....+.++|++...... .
T Consensus 147 --------------~~------------fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---------~ 191 (783)
T KOG1008|consen 147 --------------PL------------FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---------S 191 (783)
T ss_pred --------------cc------------cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------h
Confidence 00 001122334478888889999999 88899999998221111 1
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEE-ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-E
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-H 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~ 341 (501)
.-.+..+..+.+.|-.++++++-. ||.|.+|| .++-+.. ...... ...+. ...+..++|+|... .
T Consensus 192 svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp---l~~i~~-~~N~~--------~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 192 SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP---LQIILR-NENKK--------PKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH---HHHHhh-CCCCc--------ccceeeEEeccCCcch
Confidence 112345677888883337777644 99999999 4432211 111111 11110 12488999999543 3
Q ss_pred EEEE-cC-CcEEEEEeeC
Q 010801 342 LLSR-DY-MNLKLWDIRM 357 (501)
Q Consensus 342 l~~~-~~-~~i~lwd~~~ 357 (501)
+++. .| ++|+++|+..
T Consensus 259 la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhccCcceEEEecccc
Confidence 3333 45 9999999864
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.3e-05 Score=73.79 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=95.6
Q ss_pred CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC---------CCeEEEEEc
Q 010801 228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDM 297 (501)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~~wd~ 297 (501)
.+++.+.+| ..|+|.+-|.++ -+.++ ++..|++.|.++... | ++|++++. |.-|++||+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s-~~~ih-------t~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNS-FETIH-------TFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ecCcEEEeecccceEEeecCCc-Cceee-------eeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhh
Confidence 467889999 999999999994 44444 378899998876654 6 78888876 455899999
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEE-cCCcEEEEEeeCCCCc-eeEeecccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DYMNLKLWDIRMDSTP-VATFKIHEHLRPK 374 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~-~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~ 374 (501)
|..+... -+.. ...-.-+.|+|. ...+++. ..|...+-|..+.+.+ ...+..+....
T Consensus 254 Rmmral~----PI~~--------------~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-- 313 (1118)
T KOG1275|consen 254 RMMRALS----PIQF--------------PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-- 313 (1118)
T ss_pred hhhhccC----Cccc--------------ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC--
Confidence 9865331 1111 011244566664 2334444 4599999885433333 33333332211
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
.+..+++|++|..||.|..+|.|.+|.
T Consensus 314 -----------~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 314 -----------GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -----------cceeEEecCCCceEEEecccCcEeeec
Confidence 016899999999999999999999997
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.004 Score=59.75 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=76.6
Q ss_pred EEEEE-cCCeEEEEECCCCCeeeeeeecCCCC--CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010801 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (501)
Q Consensus 232 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 308 (501)
.++.+ .++.+.-+|.++++...+. ...... ......+ ... + ..++.++.+|.+..+|..+++...+.
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~sP----~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~-- 231 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTV-NLDVPSLTLRGESAP----ATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQ-- 231 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeee-cCCCCcccccCCCCC----EEE--C-CEEEEEcCCCEEEEEEccCChhhhee--
Confidence 45555 7888998998855554432 110000 0011111 111 2 34666788999999999988654211
Q ss_pred eeecccccCCCcceeeecccceeEEEEee---CCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcc
Q 010801 309 ILRDAAESHGSKSFFTEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (501)
.. ........ + .....+..+| ++..++++.++.++.+|..+ ++.+-...... .
T Consensus 232 --~~-~~~~~~~~-~----~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~-~-------------- 287 (394)
T PRK11138 232 --RI-SQPTGATE-I----DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGS-V-------------- 287 (394)
T ss_pred --cc-ccCCCccc-h----hcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCC-c--------------
Confidence 10 00000000 0 0000111112 44444444568999999986 66544332111 0
Q ss_pred eeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 386 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 386 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
..+.. ++..|+.++.+|.+..+|..+++.
T Consensus 288 --~~~~~--~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 288 --NDFAV--DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred --cCcEE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 11222 455677788899999999988854
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0014 Score=57.23 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=64.6
Q ss_pred CcccceEEEEecCCCCEEEEE-cCCeEEEEECCC--CCeeeeeeecCC-CCCCCcccceEEEEEecCCCcEEEEEeCCCe
Q 010801 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 291 (501)
.+...+-.++|.+.++.|+.+ ...-..+|.++. ....+....... .........+.+++++|..+++++.......
T Consensus 115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 455678999999998888888 666666776653 122221111100 0012233457899999987678888888899
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
|..+| .+++.. ..+......... ...-...-.|+|.++|++.+++.-+..++|
T Consensus 195 l~~~d-~~G~~~----~~~~L~~g~~gl----~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 195 LLELD-RQGRVV----SSLSLDRGFHGL----SKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEE--TT--EE----EEEE-STTGGG-----SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEEC-CCCCEE----EEEEeCCcccCc----ccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 99999 445432 222220000000 000124678999999988877754655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0094 Score=57.06 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=31.3
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeecc
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~ 368 (501)
+++..|++||+|++||.-.+ |.+.+...+. .+.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 57999999999999997655 9998988764 5556666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00028 Score=67.12 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=95.3
Q ss_pred ccceEEEEecCCCCEEEEE--c--C-CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCe-
Q 010801 218 DFNINSISNNSDCETFVSA--D--D-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF- 291 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~- 291 (501)
...+..-+|+|+++.++.- . . ..+.+++++.+...... ++.++. ...+|+|||.+++++...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~---~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNN---GAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCcc---CCccCCCCCCEEEEEECCCCCc
Confidence 4456667899999887652 2 2 35999999955443321 233333 356899999555556666776
Q ss_pred -EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEeecc
Q 010801 292 -VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 292 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~ 368 (501)
|.++|+..+... +.-.. .+.-..-.|+|||++|+-.+| |.-.||-...++.....+...
T Consensus 263 ~iy~~dl~~~~~~----~Lt~~--------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 263 DIYLMDLDGKNLP----RLTNG--------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred cEEEEcCCCCcce----ecccC--------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 455577665422 21111 122336789999999997765 554454443335554555433
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCe--EEEEecCCCC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNL--LRIFSHGVGS 417 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~ 417 (501)
...- ..-.|+|||++|+..+. +|. |.+.|+.++.
T Consensus 325 ~~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 325 GGGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 3321 25789999999987764 344 6667776653
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.002 Score=62.84 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=56.4
Q ss_pred eEEEEcCCCcEEEEEe-CCCeEEEEecCCCCc-----------ceEEEecccCcccceeeccCCccccCccceeeeeccc
Q 010801 388 FECSVSGDGLHFATGS-YSNLLRIFSHGVGSA-----------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (501)
..+.++|||+++++++ .+++|.|.|+.+.+. +..+.+.-.++ .-.+|.. +|.. ..+-.-|
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg--~G~a-----ytslf~d 395 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDG--RGNA-----YTTLFLD 395 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECC--CCCE-----EEeEeec
Confidence 6899999999887655 589999999987543 22333332222 2344433 3433 5666667
Q ss_pred ce-eeccccC-----------CcccccccCCCeEEEE------EccCCCEEEEee
Q 010801 456 QA-HENSSSG-----------HHELSYNLSSKLLHLA------WHPTTNLIACAN 492 (501)
Q Consensus 456 ~~-~iw~~~~-----------~~~~~~~~~~~i~~~~------~sp~~~~la~~~ 492 (501)
.. ..|+... .+....+-...+-++. -.|||++|++.+
T Consensus 396 sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 396 SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 77 7885543 1222122222222333 368899998876
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0049 Score=58.20 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=119.8
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceee--eeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.|+.+.|+ ++...|+++...|.|-||.....+.-. ..........+.+.. .
T Consensus 3 ~v~~vs~a--~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~-------------------------~ 55 (395)
T PF08596_consen 3 SVTHVSFA--PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSL-------------------------N 55 (395)
T ss_dssp -EEEEEEE--TTTTEEEEEETTS-EEEEEEEE------------------S--G-------------------------G
T ss_pred eEEEEEec--CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccc-------------------------c
Confidence 48889998 677889999999999999887654221 000000000000000 0
Q ss_pred CcceEEEeccCc------eeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC-C
Q 010801 193 NMATKIANVGNS------VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-D 264 (501)
Q Consensus 193 ~~~i~~w~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~ 264 (501)
++.-.+.|+... .-..+...+ ....++|++++.+.- .+++.| .+|.+.|.|++ +...+..-.+..... .
T Consensus 56 ~~~~~l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~ 132 (395)
T PF08596_consen 56 NSPGKLTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSK 132 (395)
T ss_dssp GSS-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BT-SEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-S
T ss_pred CCCcceEEehhhCCcccccccCchhhe-eccCCcEeEEecCCC-cEEEEEecCCcEEEEECC-CCeEEeecccccccccc
Confidence 011122222221 111222222 556899999999744 499999 99999999998 554443333332111 2
Q ss_pred CcccceEEEEEec-----CC--CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEE-Ee
Q 010801 265 DLTEVITSAEFHP-----IY--CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK-FA 336 (501)
Q Consensus 265 ~~~~~v~~v~~~p-----~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~-~s 336 (501)
.....|+++.|.. |+ .-.+++|+..|.+.+|.+.-............. . ..+..+|..+. ++
T Consensus 133 ~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~-~---------~~~~~~i~~I~~i~ 202 (395)
T PF08596_consen 133 SSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA-T---------TNHDSPILSIIPIN 202 (395)
T ss_dssp S----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE-E-----------SS----EEEEEE
T ss_pred ccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec-c---------ccCCCceEEEEEEE
Confidence 2345688888862 11 136888999999999987521111000011111 0 11223333333 21
Q ss_pred eC---------------------CCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc--
Q 010801 337 ND---------------------GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-- 393 (501)
Q Consensus 337 p~---------------------~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-- 393 (501)
.+ ..+++++++..++++...+ .+............ ..+++-
T Consensus 203 ~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~ 266 (395)
T PF08596_consen 203 ADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPT 266 (395)
T ss_dssp TTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEE
T ss_pred CCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEee
Confidence 11 1256666778999998865 44433332111110 234442
Q ss_pred ---CCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 394 ---GDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 394 ---~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
..+..|++-..+|.|+++.+..-+.+
T Consensus 267 ~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 267 ISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp E-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred cccCCceEEEEEECCCcEEEEECCCchHh
Confidence 35677889999999999999877444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.011 Score=54.51 Aligned_cols=82 Identities=11% Similarity=0.135 Sum_probs=38.8
Q ss_pred cccceEEEEEccCCCEEEEEe-cCCc--EEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGD-RGGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~-~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
|.-.-+.=+|.+||+.|+.++ .||. +.+.|+.+++. .+|..+..
T Consensus 34 h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i----------------------------~QLTdg~g----- 80 (386)
T PF14583_consen 34 HRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI----------------------------TQLTDGPG----- 80 (386)
T ss_dssp E---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE----------------------------EE---SS------
T ss_pred cceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEE----------------------------EECccCCC-----
Confidence 333444456788997766554 4554 55557776643 33443321
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeee
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
.......++ ++++.++-....+.|+-.|+++.+...+.
T Consensus 81 ------~~~~g~~~s--~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 81 ------DNTFGGFLS--PDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp ------B-TTT-EE---TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred ------CCccceEEe--cCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 112234454 56677666656678888888887755544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.011 Score=53.46 Aligned_cols=260 Identities=12% Similarity=0.057 Sum_probs=138.8
Q ss_pred EEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 118 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.+..+ |+++.+++++ ..-.|.+||..+-...........+... .-........+.+.++++.
T Consensus 40 ~~~~s--pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~------~~~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 40 NVALS--PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ------VVPYKNMFALSADGKFLYV 111 (342)
T ss_dssp EEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS--GGGEEE-TTSSEEEE
T ss_pred ceeEC--CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe------ecccccceEEccCCcEEEE
Confidence 34555 7888888743 3346999999988766655443221100 0112223345667777777
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
-.+++...+.+.|++.......+.. ..+..+--+++..+...|.||.+.-..+...++..... .+ -+..-.
T Consensus 112 ~N~TPa~SVtVVDl~~~kvv~ei~~------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~-t~--~F~~~~ 182 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAAKKVVGEIDT------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS-TK--VFDPDD 182 (342)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEEG------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE-EE--ESSTTT
T ss_pred EccCCCCeEEEEECCCCceeeeecC------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee-cc--ccCCCC
Confidence 7788888899999887543222211 11111111222333333578888877777555443211 01 122222
Q ss_pred cce-EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecc--cccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 268 EVI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA--AESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 268 ~~v-~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
.++ ..-++...+ ..++..+.+|.|+--|+....... ...+... .+..... -.+.-.-+++++....|..
T Consensus 183 dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e~~~~W-----rPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 183 DPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAEKADGW-----RPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp S-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHHHHTTE-----EE-SSS-EEEETTTTEEEE
T ss_pred cccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccccccCc-----CCcceeeeeeccccCeEEE
Confidence 222 233455555 567768999999999987764221 1112110 0000000 0244566788876555443
Q ss_pred ----Ec-----C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEE-eCCCeEEEE
Q 010801 345 ----RD-----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIF 411 (501)
Q Consensus 345 ----~~-----~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~-~~dg~i~iw 411 (501)
+. + ..|-++|+.+ ++.+.++...... .+++.+.+.+ +|++. ..++.+.+|
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred EecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 21 2 3577778876 7888888753322 4788888765 56554 457999999
Q ss_pred ecCCCCcc
Q 010801 412 SHGVGSAG 419 (501)
Q Consensus 412 d~~~~~~~ 419 (501)
|..+++.+
T Consensus 318 D~~tGk~~ 325 (342)
T PF06433_consen 318 DAATGKLV 325 (342)
T ss_dssp ETTT--EE
T ss_pred eCcCCcEE
Confidence 99999543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0035 Score=54.76 Aligned_cols=174 Identities=9% Similarity=0.042 Sum_probs=90.5
Q ss_pred CCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeE
Q 010801 215 HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 292 (501)
.+-...+..++|+|+.+.|++ . ..+.|...+.+ ++.++.+. +.+. ...-.|++..++ .++++.-.++.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~-----l~g~-~D~EgI~y~g~~-~~vl~~Er~~~L 88 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIP-----LDGF-GDYEGITYLGNG-RYVLSEERDQRL 88 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE------SS--SSEEEEEE-STT-EEEEEETTTTEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEe-----CCCC-CCceeEEEECCC-EEEEEEcCCCcE
Confidence 455667999999998665555 5 77788777765 45555542 3332 345788888776 666665568999
Q ss_pred EEEEccCCccccc--ccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeC--CCCceeEe--
Q 010801 293 RLVDMRQSALCDH--SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM--DSTPVATF-- 365 (501)
Q Consensus 293 ~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~--~~~~~~~~-- 365 (501)
.++++........ ..+.+.. .....+...+-.++|.|.++.|+.+. ..-..+|.++. ....+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISL--------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp EEEEE----TT--EEEEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EEEEEeccccccchhhceEEec--------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 9998854321110 0111111 00012346789999999877666654 35566777653 11111111
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecC
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 414 (501)
...... .-...+..+++++|. +.+++-...+..|..+|.+
T Consensus 161 ~~~~~~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 161 QDLDDD---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp HHHH-H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred cccccc---------cceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 111100 011223368999996 5667777778888888843
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0039 Score=59.83 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=58.9
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST 360 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~ 360 (501)
..++.++.+|.+..+|..+++.. +.. .. .....+.. .++..++...++.+..+|..+ ++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~------W~~-~~------------~~~~~~~~-~~~~vy~~~~~g~l~ald~~t-G~ 315 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIV------WKR-EY------------GSVNDFAV-DGGRIYLVDQNDRVYALDTRG-GV 315 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEE------Eee-cC------------CCccCcEE-ECCEEEEEcCCCeEEEEECCC-Cc
Confidence 45667778999999999998643 322 00 01111222 233333444569999999875 65
Q ss_pred ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 361 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
.+-.......... .+... .+..|+.++.||.|++.|..+|+.+
T Consensus 316 ~~W~~~~~~~~~~--------------~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 316 ELWSQSDLLHRLL--------------TAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEEcccccCCCcc--------------cCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 4433221111100 11222 2456788899999999999998543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0012 Score=63.82 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=86.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.--++. ..+++++.|+.-|.+++|+-..++......
T Consensus 34 ~~v~lTc~d--st~~~l~~GsS~G~lyl~~R~~~~~~~~~~--------------------------------------- 72 (726)
T KOG3621|consen 34 ARVKLTCVD--ATEEYLAMGSSAGSVYLYNRHTGEMRKLKN--------------------------------------- 72 (726)
T ss_pred ceEEEEEee--cCCceEEEecccceEEEEecCchhhhcccc---------------------------------------
Confidence 344444554 678999999999999999988876443220
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+-...+..+..+++..++|+| ..|.|.++-++. ...-...-..+ .-..|...|++
T Consensus 73 ---------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~-~d~~~~~rVTa 129 (726)
T KOG3621|consen 73 ---------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTP-CDKSHKCRVTA 129 (726)
T ss_pred ---------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeecc-ccccCCceEEE
Confidence 1223345566678888888888 999999998884 32221111111 11337889999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
++|++++ ..+++|...|.|.+-.+..
T Consensus 130 l~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 130 LEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEecccc-cEEeecCCCceEEEEEech
Confidence 9999999 9999999999999988876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00069 Score=64.51 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=111.8
Q ss_pred ccceEEEEEccCCCEEEEEe---cC-CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 32 VDIVSAIEFDKTGDYLAVGD---RG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~---~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
...+..-+|+|+++.++.-. .. ..+.++++.+++.. .+..+.++.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------------------------~i~~~~g~~------ 240 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------------------------VILNFNGNN------ 240 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------------------------eeeccCCcc------
Confidence 45677788999998776543 22 35888898887542 334455554
Q ss_pred cccccccceeEEEEeecCCCCEEEEee-CCCeEE--EEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIK--LWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~--lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
...+|+ |||+.|+.+. .|+... +.|+.++....+.
T Consensus 241 ---------~~P~fs--pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt------------------------------- 278 (425)
T COG0823 241 ---------GAPAFS--PDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT------------------------------- 278 (425)
T ss_pred ---------CCccCC--CCCCEEEEEECCCCCccEEEEcCCCCcceecc-------------------------------
Confidence 445787 7888887764 666554 4466655522211
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEE--ECCCCCeeeeeeecCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKP 260 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~ 260 (501)
.-.+.-..=.|+|||+.++-. ..|.-.|| +.+ +....++
T Consensus 279 -------------------------------~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~-g~~~~ri----- 321 (425)
T COG0823 279 -------------------------------NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE-GSQVTRL----- 321 (425)
T ss_pred -------------------------------cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC-CCceeEe-----
Confidence 111111145689999999875 55654544 555 3322221
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeC-CCe--EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
+...... ....|+|+| ++|+..+. +|. |.+.|+.++.. .+.+.. ........+.|
T Consensus 322 -T~~~~~~--~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~----~~~lt~--------------~~~~e~ps~~~ 379 (425)
T COG0823 322 -TFSGGGN--SNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGK----IRILTS--------------TYLNESPSWAP 379 (425)
T ss_pred -eccCCCC--cCccCCCCC-CEEEEEeccCCceeeEEeccCCCCc----EEEccc--------------cccCCCCCcCC
Confidence 1222212 266899999 77776664 344 55666655432 133333 23445667888
Q ss_pred CCCEEEEEcC--CcEEEEEeeCCCCce
Q 010801 338 DGQHLLSRDY--MNLKLWDIRMDSTPV 362 (501)
Q Consensus 338 ~~~~l~~~~~--~~i~lwd~~~~~~~~ 362 (501)
+|+.+...+. +.=.++.+...++..
T Consensus 380 ng~~i~~~s~~~~~~~l~~~s~~g~~~ 406 (425)
T COG0823 380 NGRMIMFSSGQGGGSVLSLVSLDGRVS 406 (425)
T ss_pred CCceEEEeccCCCCceEEEeeccceeE
Confidence 8888775432 333444443323333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.013 Score=56.31 Aligned_cols=145 Identities=9% Similarity=0.042 Sum_probs=71.1
Q ss_pred CCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
|.+|....++.|.+||+. .++.++.++ -.+|..+.|++++ ++++..+.+ .+.+++........
T Consensus 117 G~LL~~~~~~~i~~yDw~-~~~~i~~i~---------v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~----- 179 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWE-TGKLIRRID---------VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAA----- 179 (443)
T ss_dssp SSSEEEEETTEEEEE-TT-T--EEEEES---------S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHH-----
T ss_pred CcEEEEECCCCEEEEEhh-HcceeeEEe---------cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhccc-----
Confidence 777777766699999999 455555431 1248999999998 888888765 56776644320000
Q ss_pred eecccccCC--CcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 310 LRDAAESHG--SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 310 ~~~~~~~~~--~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
. .+... ....+......|.+.+|..| .++-.+.++|+- +. +.....+..-+.+.
T Consensus 180 --~-~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~--~Ge~~~i~~ld~~~--------------- 235 (443)
T PF04053_consen 180 --I-PEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LV--NGETGIIAHLDKPL--------------- 235 (443)
T ss_dssp --B-TTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EE--TTEEEEEEE-SS-----------------
T ss_pred --c-cccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EE--cCCcceEEEcCCce---------------
Confidence 0 00000 00001111357888889865 444333346665 33 22233333323322
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.=+...++.+.+.....|+.|..+.+..
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 4567777667888888888888887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0015 Score=66.08 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=71.2
Q ss_pred EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010801 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (501)
Q Consensus 232 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 310 (501)
.-+.| .++.+..||.+..+..+. .... ..........|++-..+| .||+|+.+|.||+||- .+... ...
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v--~~~~-k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A---KT~- 613 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLV--DSQS-KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA---KTA- 613 (794)
T ss_pred ceEEEECCCceEEeccCCCCCcee--eccc-cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh---hhc-
Confidence 45567 999999999985542211 1010 112234556788888776 7999999999999993 22111 011
Q ss_pred ecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
+++...+|..+..+.||++|++.++..|.|+++.
T Consensus 614 ------------lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 614 ------------LPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ------------CCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 2334579999999999999998888888888864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.011 Score=57.75 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=54.0
Q ss_pred cceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCc------------eeEeeccccccccccccCCCCCcceeeEEEEc
Q 010801 328 ASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 393 (501)
.....+.++|||++++++. +.++.|.|+.+ .+. +.+......+ ...+|+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k-~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFD 383 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK-LDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFD 383 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChh-hhhhhhccCCccceEEEeeccCCCc----------------ceEEEC
Confidence 5678899999999998875 49999999975 221 2222222222 468999
Q ss_pred CCCcEEEEEeCCCeEEEEecCC
Q 010801 394 GDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 394 ~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
++|....|-.-|..|..|+++.
T Consensus 384 g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 384 GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEeEeecceeEEEehHH
Confidence 9999888888999999999876
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0084 Score=52.99 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=58.1
Q ss_pred CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc---ccceEEEEEecCCCcEEEEEeCCCe-EEEEEccCCcccc
Q 010801 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCD 304 (501)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~ 304 (501)
+..++.+ .++.|..+|..++...... .........+ ...+..-....++ .++.++.++. +.+ |+.+++.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~-- 195 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEK-- 195 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEE--
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCE--
Confidence 6677777 7999999999955443332 2111010000 0111222222333 5666666775 555 9998863
Q ss_pred cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCce
Q 010801 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 362 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~ 362 (501)
.+.. . ...+... ...++..|+.++ ++.|..||+++ ++.+
T Consensus 196 ----~w~~-~------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t-G~~~ 235 (238)
T PF13360_consen 196 ----LWSK-P------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT-GKVV 235 (238)
T ss_dssp ----EEEE-C------------SS-ECEC-EECCCTEEEEEETTTEEEEEETTT-TEEE
T ss_pred ----EEEe-c------------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC-CCEE
Confidence 2322 0 0122221 345667777665 69999999986 6543
|
... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=65.30 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=80.7
Q ss_pred cCccccCCCCCCcccccceecc--CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
+.....++.|.-.+++.+.+++ +|.+.++--.. ++.+.. .-.-.+++++|+|..-.|+.| .-|.+.+|..+
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfadtG----EPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFADTG----EPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEecCC----CCCccc--ccceehhhhccChHHHHHhhccccceeEEEecC
Confidence 4444556677777777777643 45666654332 222211 112345679999998888999 99999999988
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
... . .++ ...|..+|..+.|+++| ..++++..-|.|.+|....
T Consensus 90 ~~e-~-htv------~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 90 TTE-T-HTV------VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred Cce-e-eee------ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence 333 2 221 46799999999999999 9999999999999998764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.028 Score=50.86 Aligned_cols=242 Identities=13% Similarity=0.029 Sum_probs=123.5
Q ss_pred EEecCCCCEEEE----------E-cCCeEEEEECCCCCeeeeeeecCCC-CCCCcccceEEEEEecCCCcEEEEEeC--C
Q 010801 224 ISNNSDCETFVS----------A-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSS--R 289 (501)
Q Consensus 224 l~~~~~~~~l~~----------~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~--d 289 (501)
+..+|+++.+++ | +...|.+||..+ -....-+.+.+. ... .......++++.++ +++++... -
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~-~~~~~~~~~ls~dg-k~~~V~N~TPa 117 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQ-VVPYKNMFALSADG-KFLYVQNFTPA 117 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B---BS--GGGEEE-TTS-SEEEEEEESSS
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhe-ecccccceEEccCC-cEEEEEccCCC
Confidence 556889888775 3 355799999984 334443434432 121 11123445788888 77666533 5
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccc
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
-.|.+.|+..++.. ..+.. .....+-=+++..+...|.||.+.-..+...++...+...--
T Consensus 118 ~SVtVVDl~~~kvv----~ei~~---------------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F 178 (342)
T PF06433_consen 118 TSVTVVDLAAKKVV----GEIDT---------------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF 178 (342)
T ss_dssp EEEEEEETTTTEEE----EEEEG---------------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred CeEEEEECCCCcee----eeecC---------------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence 67899999887543 33333 122222223344566667789999999886677653322100
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc-eEEEeccc----------CcccceeeccC
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGK----------NENRKPILQAA 438 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~----------~~v~~~~~~~~ 438 (501)
. -.++.++ ..-+++..+..++--+.+|.|+--|+...... ...+..-. +.-..+++.+.
T Consensus 179 ~--------~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 179 D--------PDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp S--------TTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred C--------CCCcccc--cccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 0 0112222 34455555555555889999999888765322 11121100 01112344332
Q ss_pred CccccCccceeeeec-----ccce-eecccc--CC-cccccccCCCeEEEEEccCCC-EEEEee--CCeEEEEeC
Q 010801 439 PRARRSSLSNLTRGL-----YRQA-HENSSS--GH-HELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLFFHYA 501 (501)
Q Consensus 439 ~~~~~~~~~~l~~~~-----~~~~-~iw~~~--~~-~~~~~~~~~~i~~~~~sp~~~-~la~~~--~~~~~i~~~ 501 (501)
.+++ +. |.-.+ ++.. .||-.+ .. .........++.+|+.+.+.+ .|.+.+ +..+++|++
T Consensus 249 -~~rl--yv-LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 249 -SGRL--YV-LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp -TTEE--EE-EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred -cCeE--EE-EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 2232 10 11111 3344 788222 11 112233445788999999876 554433 456999875
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.003 Score=46.65 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=47.0
Q ss_pred eEEEEEcc---CC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 35 VSAIEFDK---TG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 35 v~~v~~s~---~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|++|++.. || +.|++|+.|..||||+-+. .+.++..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~---------- 42 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITET---------- 42 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecc----------
Confidence 66777665 33 6899999999999999431 22333332
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEec
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~ 144 (501)
+.|.+++-. .+..|+.+-.+|+|-+|+-
T Consensus 43 ---~~v~~L~~~---~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 43 ---DKVTSLCSL---GGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ---cceEEEEEc---CCCEEEEEecCCEEEEEeC
Confidence 557887765 3478999999999999975
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.077 Score=50.18 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=56.3
Q ss_pred eeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcc--eeeEEEEcC-CCcE
Q 010801 323 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF--DKFECSVSG-DGLH 398 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~-~~~~ 398 (501)
+......+.+++.+|++++.|+.+. |.|.|+|+.+ +..++.++|-.+......+........ ......-.+ ...+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 4455667899999999998888765 9999999986 777777777665421100000000000 000000000 0123
Q ss_pred E-EEEeCCCeEEEEecCCCCcc
Q 010801 399 F-ATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 399 l-~s~~~dg~i~iwd~~~~~~~ 419 (501)
| +-.-.-|.|.||.+..|..+
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEE
Confidence 3 34566899999999998544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.01 Score=43.85 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=40.6
Q ss_pred cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe---cCCCcEEEEEeCCCeE
Q 010801 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFV 292 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~---p~~~~~l~~~~~dg~i 292 (501)
..+.|.++.-... ..++.+ .+|+|-+|+-. .+..+ ++ ....+.++.+. .+|...|++|-.+|.|
T Consensus 41 e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR---iK------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 41 ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR---IK------SKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee---ec------cCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 3456777776655 468888 99999999764 23333 22 11224555443 3444579999989887
Q ss_pred E
Q 010801 293 R 293 (501)
Q Consensus 293 ~ 293 (501)
-
T Consensus 109 e 109 (111)
T PF14783_consen 109 E 109 (111)
T ss_pred E
Confidence 4
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.055 Score=51.03 Aligned_cols=280 Identities=13% Similarity=0.224 Sum_probs=135.0
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+....|||+|++||... ++.|.+++..+++.. .+...... ..+.|- + +++-.-+
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~----------------~lT~dg~~---~i~nG~-~--dwvyeEE 98 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET----------------QLTTDGEP---GIYNGV-P--DWVYEEE 98 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE----------------ESES--TT---TEEESB-----HHHHHH
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE----------------Eeccccce---eEEcCc-c--ceecccc
Confidence 46789999999999999875 678999987766431 00000000 001111 1 1111111
Q ss_pred cccceeEEEEeecCCCCEEEEee-CCCeEEEEeccc---cc----eeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 112 IEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD---QK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
.-+.-..+-|| ||+++|+... .+..|+.+.+.. .. ......+...
T Consensus 99 v~~~~~~~~WS--pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~------------------------- 151 (353)
T PF00930_consen 99 VFDRRSAVWWS--PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA------------------------- 151 (353)
T ss_dssp TSSSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT-------------------------
T ss_pred ccccccceEEC--CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC-------------------------
Confidence 11334678898 8999999876 455555554432 11 1111111100
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEe-ecCCcccceEEEEecCCCCEEEEE---c-C--CeEEEEECCCCCeeeeee
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCETFVSA---D-D--LRINLWNLEISDQCFNIV 256 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~---~-d--~~i~iwd~~~~~~~~~~~ 256 (501)
|.-.+.-.+.++++......+.... -......-+..+.|.++++.|+.. + . ..+.+.|..++.......
T Consensus 152 ----G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 152 ----GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp ----TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred ----CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 0000122445566654432211110 002335667899999999844442 2 2 245556766433222211
Q ss_pred ecCCCCCCCcccceEEEEEe-cCCCcEEEEEeCCCeEEEE--EccCCcccccccceeecccccCCCcceeeeccccee-E
Q 010801 257 DMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-D 332 (501)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~ 332 (501)
... .+--..-....+. +++..+|.....+|--+|| +...+.. +.+.. ..-.|. -
T Consensus 228 e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-----~~lT~-------------G~~~V~~i 285 (353)
T PF00930_consen 228 ETS----DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-----RQLTS-------------GDWEVTSI 285 (353)
T ss_dssp EES----SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-----EESS--------------SSS-EEEE
T ss_pred ecC----CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-----ecccc-------------Cceeeccc
Confidence 111 1111222344554 6664666666677765555 4444431 11111 123453 4
Q ss_pred EEEeeCCCEEE-EEc--C-CcEEEEEeeCC-CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE
Q 010801 333 IKFANDGQHLL-SRD--Y-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (501)
Q Consensus 333 ~~~sp~~~~l~-~~~--~-~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 402 (501)
+.++++++.|. ++. + ..-.||.+... +..+..+....... ..+.|||++++++-.
T Consensus 286 ~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---------------~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 286 LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---------------YSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---------------EEEEE-TTSSEEEEE
T ss_pred ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---------------eEEEECCCCCEEEEE
Confidence 67788877654 442 2 56677776654 45556665444331 379999999987743
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.014 Score=56.05 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=56.5
Q ss_pred eEEEEecCCCCEEEEE-cCCeEEEE-ECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 221 INSISNNSDCETFVSA-DDLRINLW-NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
-....|.+.+ .+|+- .+++|.|+ +++ ... .+.+ .++ ..+..+-. | .+|...+.+ .|.+||+.
T Consensus 71 g~~~vw~~~n-~yAv~~~~~~I~I~kn~~-~~~-~k~i-----~~~---~~~~~If~---G-~LL~~~~~~-~i~~yDw~ 134 (443)
T PF04053_consen 71 GLSFVWSSRN-RYAVLESSSTIKIYKNFK-NEV-VKSI-----KLP---FSVEKIFG---G-NLLGVKSSD-FICFYDWE 134 (443)
T ss_dssp -SEEEE-TSS-EEEEE-TTS-EEEEETTE-E-T-T----------S---S-EEEEE----S-SSEEEEETT-EEEEE-TT
T ss_pred eeEEEEecCc-cEEEEECCCeEEEEEcCc-ccc-ceEE-----cCC---cccceEEc---C-cEEEEECCC-CEEEEEhh
Confidence 3457888855 46666 78889996 343 211 1111 011 12333322 6 777766554 89999999
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeC
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~ 357 (501)
+++.. +.++. .+|..+.|+++|++++..++..+.+++...
T Consensus 135 ~~~~i----~~i~v---------------~~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 135 TGKLI----RRIDV---------------SAVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp T--EE----EEESS----------------E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred Hccee----eEEec---------------CCCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 98655 44444 348999999999999988888999988753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.061 Score=53.13 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
.+..|+.++.||.|+.+|.++|+.+ ...+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l-W~~~ 433 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL-WKFR 433 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee-eEEE
Confidence 4568888999999999999999555 3443
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00061 Score=64.88 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=63.4
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE-EEEEecCCCcEEEEEeCCCeEEEE
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
...+.-+.|+|.-.++|.+ .+|.|.+..++ -.+... ++-|...++ +++|.||| ++|++|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence 4467789999999999999 99999999988 444443 444555555 99999999 999999999999999
Q ss_pred EccCCcccc
Q 010801 296 DMRQSALCD 304 (501)
Q Consensus 296 d~~~~~~~~ 304 (501)
|..++....
T Consensus 90 Dve~~~~l~ 98 (665)
T KOG4640|consen 90 DVEKGGRLV 98 (665)
T ss_pred EccCCCcee
Confidence 999886553
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.03 Score=57.02 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=85.4
Q ss_pred cEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC--------CEEEEEcCCcEE
Q 010801 281 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--------QHLLSRDYMNLK 351 (501)
Q Consensus 281 ~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--------~~l~~~~~~~i~ 351 (501)
++|+.- .....|+-.|+..|+.+ ..|..+. ..+|. .+.|+. +.++.-+++.+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~------------~~~v~--~~~p~~K~aqlt~e~tflGls~n~lf 555 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHD------------DIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLF 555 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEE----EEeecCC------------Cccee--EecccccccccCCCceEEEECCCceE
Confidence 444433 34678999999999766 5555521 11233 333432 223333569999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
.||.+..+..+..-..+.. .....| .+++-+.+| +||.|+.+|.||+||-. +..
T Consensus 556 riDpR~~~~k~v~~~~k~Y---------~~~~~F--s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~------------- 609 (794)
T PF08553_consen 556 RIDPRLSGNKLVDSQSKQY---------SSKNNF--SCFATTEDG-YIAVGSNKGDIRLYDRL-GKR------------- 609 (794)
T ss_pred EeccCCCCCceeecccccc---------ccCCCc--eEEEecCCc-eEEEEeCCCcEEeeccc-chh-------------
Confidence 9999864422221122211 111222 567777666 78999999999999832 210
Q ss_pred ceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+ ...+.+...+|.+|..+.||++|++.|..-+.++.
T Consensus 610 A---------------------------------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 610 A---------------------------------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred h---------------------------------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 0 00112344589999999999999988888776654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.11 Score=49.86 Aligned_cols=165 Identities=15% Similarity=0.005 Sum_probs=80.0
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCC--CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
+.+.++.|+.+.++++...||.++++|+. +.. .+.+.. ....-....+....+..+| ++.-..++.+.+..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF---QFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVN 153 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce---eechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEe
Confidence 78999999987766666699999999987 333 111110 0011112223333444455 44444555554443
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
--...... +... ..|.....+..+........++.+....+.. .++.+.+.+-.. .+. +... +.+
T Consensus 154 n~~~~~~~---~~~~---~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~~~-~~i--- 219 (410)
T PF04841_consen 154 NIDEPVKL---RRLP---EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS-FKQ---IDSD-GPI--- 219 (410)
T ss_pred Cccccchh---hccc---cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-ccc---ccCC-CCe---
Confidence 22211110 0000 0111100000011111112344444433332 335555443321 111 1111 111
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
..++.||+|++||.-..+|.+.+.+.+-.
T Consensus 220 ------------~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 220 ------------IKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ------------EEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 68999999999999999999999876544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.18 Score=51.56 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=62.6
Q ss_pred CCcceeeEEEEcCC-CcEEEEEeC----------CCeEEEEecCCCCcceEEEe--cccCcccceeeccCCccccCccce
Q 010801 382 DSIFDKFECSVSGD-GLHFATGSY----------SNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSN 448 (501)
Q Consensus 382 ~~~~~~~~~~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~ 448 (501)
++...+.++.|..| +.+++.|.. .|.|.||.+..+..+ ..+. .-++.+.++... +|++
T Consensus 772 E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~~v~e~~v~Gav~aL~~f---ngkl----- 842 (1096)
T KOG1897|consen 772 ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-ELVAETVVKGAVYALVEF---NGKL----- 842 (1096)
T ss_pred ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-eeeeeeeeccceeehhhh---CCeE-----
Confidence 34433456678887 778887763 588889988873232 2221 122333333332 5665
Q ss_pred eeeecccce-eeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 449 LTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 449 l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
+|.-+..-. .-|..++.+.....+..++..+...-.|+.+++|.
T Consensus 843 lA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 843 LAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred EEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence 554444333 55666656666667778888898888899888886
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.083 Score=49.10 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=70.0
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
...++|++++-- +..|+++.++.|.+|++.........- .......+.++... + +++++|.....+.++
T Consensus 86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLL 154 (321)
T ss_dssp EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence 346778888765 345888878999999999544133221 11122355666555 5 689999988888888
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEee
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 356 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~ 356 (501)
..+..... ...+.. .. ....++++.+-++++.+++++. |.+.++...
T Consensus 155 ~~~~~~~~---l~~va~---d~--------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNK---LILVAR---DY--------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE----EEEEEE---ES--------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCE---EEEEEe---cC--------CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 55542110 011111 00 1356889999877777777764 999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0014 Score=62.60 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=71.2
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..+..+.|+|.-.+||.+.. |.|-+..+. .+.+.++..+...+. .+++|.|||++||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence 46888999999999999864 989998886 566666765554431 3899999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeec
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
+|++.|++++..+......-..++.++.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999999866644333444455555554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.16 Score=47.45 Aligned_cols=119 Identities=11% Similarity=0.130 Sum_probs=55.8
Q ss_pred cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEeCCCeEEEEEc-cCCcccccccceeecc
Q 010801 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDA 313 (501)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~ 313 (501)
...++.+||+. ..+.++++++. .....+..|.|. |+...-++.+....+|..|-- ..++ ....++++.
T Consensus 220 yG~~l~vWD~~-~r~~~Q~idLg-----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~a~kVi~i- 290 (461)
T PF05694_consen 220 YGHSLHVWDWS-TRKLLQTIDLG-----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WAAEKVIDI- 290 (461)
T ss_dssp S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EEEEEEEEE-
T ss_pred ccCeEEEEECC-CCcEeeEEecC-----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--eeeeEEEEC-
Confidence 35789999999 66777776543 222334566664 444233555555566665543 3332 122233333
Q ss_pred cccCCCcc-------eeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeE
Q 010801 314 AESHGSKS-------FFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 314 ~~~~~~~~-------~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~ 364 (501)
...+.... .+..-..-|+.+..|.|.++|.... .|.|+.||+....++...
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 11111111 1122245689999999999998775 499999999765555433
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.15 Score=46.40 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=58.3
Q ss_pred CCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEccC--CcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
..+-..-+.++|+||+ +.|+.+.. .+.|.-|++.. +....+....+ +....+..-.++...+|.
T Consensus 159 ~~~~~~~NGla~SpDg-~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~------------~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 159 DDDLTIPNGLAFSPDG-KTLYVADTPANRIHRYDLDPATGPIGGRRGFVD------------FDEEPGLPDGMAVDADGN 225 (307)
T ss_pred cCcEEecCceEECCCC-CEEEEEeCCCCeEEEEecCcccCccCCcceEEE------------ccCCCCCCCceEEeCCCC
Confidence 3334455889999999 66666555 58888888763 21111100111 111245677888888898
Q ss_pred EEEEEc-C-CcEEEEEeeCCCCceeEeecccc
Q 010801 341 HLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 341 ~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
+-+++. . +.|.+|+.+ ++++..+..+..
T Consensus 226 lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~~ 255 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD--GKLLGEIKLPVK 255 (307)
T ss_pred EEEecccCCceEEEECCC--CcEEEEEECCCC
Confidence 876543 3 499999985 888888876643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00051 Score=40.11 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=28.5
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
.|...|+++.|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4678899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.043 Score=47.61 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=70.4
Q ss_pred EEEEEecCCCcEEEEEeCCCe-EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc---
Q 010801 271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--- 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--- 346 (501)
..++++|..+.-++.+-.-|+ ..++|....... .++.. .....|.||. .|||||++|.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~p----v~~~s-----~~~RHfyGHG------vfs~dG~~LYATEndf 135 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEP----VTLVS-----QEGRHFYGHG------VFSPDGRLLYATENDF 135 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCc----EEEec-----ccCceeeccc------ccCCCCcEEEeecCCC
Confidence 467788877667777777666 457888776543 22211 1222344553 5999999998752
Q ss_pred C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 347 Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 347 ~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
| |.|-|||.+...+.+.++..|.-.. ..+.|.+||+.|+.+.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvan 180 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeC
Confidence 2 8899999986556677777776543 5799999999988764
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.16 Score=46.03 Aligned_cols=230 Identities=12% Similarity=0.064 Sum_probs=118.0
Q ss_pred CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010801 228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 306 (501)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 306 (501)
..++.|+.| ++| +.+++........++. +...|..+...|+- +.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence 356788888 777 8999983233333321 22239999999987 6665554 599999999875433211
Q ss_pred cceeecccccCCCcceeeecccceeEEE---EeeCCCEEEEEcCCcEEEEEeeCC---C-CceeEeeccccccccccccC
Q 010801 307 ARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~---~sp~~~~l~~~~~~~i~lwd~~~~---~-~~~~~~~~~~~~~~~~~~~~ 379 (501)
...... .... ...-......+...+ -...+.+|+++....|.+|..... . +..+++......
T Consensus 73 ~~~~~~-~~~~--~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~-------- 141 (275)
T PF00780_consen 73 APLAFP-KSRS--LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP-------- 141 (275)
T ss_pred cccccc-cccc--ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc--------
Confidence 000000 0000 000000112344443 122345666666689999988742 1 344555544333
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc---------CcccceeeccCCccccCccceee
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---------NENRKPILQAAPRARRSSLSNLT 450 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~l~ 450 (501)
..++|. ++.|+.|..++ ..+.|+.++... ..+.... .....+......++.+ |.
T Consensus 142 --------~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----Ll 204 (275)
T PF00780_consen 142 --------SSIAFL--GNKICVGTSKG-FYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEF-----LL 204 (275)
T ss_pred --------EEEEEe--CCEEEEEeCCc-eEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceE-----EE
Confidence 688888 55677776554 677899866332 1111111 1111222222112333 33
Q ss_pred eecccceeec--cccCCcc-cccccCCCeEEEEEccCCCEEEEeeCCeEEEEeC
Q 010801 451 RGLYRQAHEN--SSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 451 ~~~~~~~~iw--~~~~~~~-~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~~ 501 (501)
.- +...++ ..++... ....-+....++++ ...+|.+..++.+-||+.
T Consensus 205 ~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~~ 254 (275)
T PF00780_consen 205 CY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRSL 254 (275)
T ss_pred Ee--cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCCEEEEEEC
Confidence 32 222233 2222222 22333445556666 456888888888988863
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=39.88 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=28.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEec
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~ 62 (501)
...|.+++|+|..++||.|+.+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5679999999999999999999999999983
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=38.09 Aligned_cols=37 Identities=27% Similarity=0.617 Sum_probs=30.8
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEe
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~ 143 (501)
+...+..|. ..|.+++|. +++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~------------~~i~~~~~~--~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT------------GPVTSVAFS--PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecC------------CceeEEEEC--CCCCEEEEecCCCeEEEcC
Confidence 345566777 889999997 6678999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.3 Score=47.33 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=25.2
Q ss_pred ceEEEEEccCCCEEEEE-ecCC----cEEEEEecCCcC
Q 010801 34 IVSAIEFDKTGDYLAVG-DRGG----RVILFETVGGKN 66 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg-~~dg----~i~iw~~~~~~~ 66 (501)
.+...++||||++||.+ +..| +++|+|+.+|+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 44568899999999875 3333 599999998854
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.019 Score=54.06 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=67.6
Q ss_pred EEE-cCCeEEEEECCCCCe-eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceee
Q 010801 234 VSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (501)
Q Consensus 234 ~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 311 (501)
+.| +++.|.-||.+..+. .+.....+ .+. ......|.+-..+| ++++|+.+|.|++||- .+..-. ..
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~k--qy~-~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK---TA-- 466 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSK--QYS-TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK---TA-- 466 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeecc--ccc-cccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhh---hc--
Confidence 347 899999999885544 22211000 111 12334566666665 8999999999999996 332110 12
Q ss_pred cccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
+++...+|..+..+.||++|++.++..+.|.++.
T Consensus 467 -----------lPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 467 -----------LPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred -----------ccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2345678999999999999998888888888765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.015 Score=54.67 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=87.8
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE--------EEEEcCCcEEEE
Q 010801 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH--------LLSRDYMNLKLW 353 (501)
Q Consensus 282 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~--------l~~~~~~~i~lw 353 (501)
+|..+.....++-.|+..|+.+ ..|.. ...|+-+.+.|+.+. |+.-+++.|.-|
T Consensus 348 il~~~~~~~~l~klDIE~GKIV----eEWk~--------------~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV----EEWKF--------------EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred EeeCCCCcCcceeeecccceee----eEeec--------------cCCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence 4555666677888899988765 44544 234777778876542 333356899999
Q ss_pred EeeCCCC-ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccc
Q 010801 354 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 432 (501)
Q Consensus 354 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 432 (501)
|.+..++ .+..-++|.... ...| .|++-..+| +|+.||.+|.||+||- .+..-
T Consensus 410 DpRv~~~~kl~~~q~kqy~~---------k~nF--sc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A------------- 463 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYST---------KNNF--SCFATTESG-YIVVGSLKGDIRLYDR-IGRRA------------- 463 (644)
T ss_pred cccccCcceeeeeecccccc---------cccc--ceeeecCCc-eEEEeecCCcEEeehh-hhhhh-------------
Confidence 9886454 233333333221 1111 344444444 8999999999999997 33111
Q ss_pred eeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEE
Q 010801 433 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 498 (501)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i 498 (501)
...+.++..+|.++..+.+|++|.+.|..-+.+
T Consensus 464 ---------------------------------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 464 ---------------------------------KTALPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred ---------------------------------hhcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 011224455888999999999988888776544
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.13 Score=44.19 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=78.2
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 352 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~l 352 (501)
...++...+++.|+..+.+.--|..++++..+. +.. ..|.+-+.- -|.+++.|.. |.+++
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~--ilg----------------~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--ILG----------------VRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeeh--hhC----------------ceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 344554478888999999999999998754321 111 122222222 3778888875 99999
Q ss_pred EEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce
Q 010801 353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (501)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (501)
.+..+ +.....+...+... ......+++.++..|++|+..+..|..+..++.
T Consensus 78 l~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 78 LCVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred EEecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 99987 76666666544322 356777899999999999999999998875553
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.33 Score=45.09 Aligned_cols=137 Identities=11% Similarity=0.018 Sum_probs=80.8
Q ss_pred CeEEEEECCCC---CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc-ccccccceeeccc
Q 010801 239 LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA 314 (501)
Q Consensus 239 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~ 314 (501)
|.|.++++... ...++.+ ......++|++++-- .+ + |+++ ..+.|.+|++...+ .. +.-.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~~l~----~~~~--- 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSKTLL----KKAF--- 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTSSEE----EEEE---
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcccch----hhhe---
Confidence 88999999853 1122221 112346778888766 44 4 4443 35799999998876 22 1111
Q ss_pred ccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc
Q 010801 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (501)
Q Consensus 315 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 393 (501)
+...+........+.+|+.|+. ..+.++..+.....+..+....... .++++.|-
T Consensus 126 -----------~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l 181 (321)
T PF03178_consen 126 -----------YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL 181 (321)
T ss_dssp -----------E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred -----------ecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence 1122333344444679999875 8888887764344344443322221 12678888
Q ss_pred CCCcEEEEEeCCCeEEEEecCC
Q 010801 394 GDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 394 ~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
++++.++.+..+|.+.++....
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCcEEEEEcCCCeEEEEEECC
Confidence 6767999999999999998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.34 Score=44.96 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=47.0
Q ss_pred ccceeEEEEeeCCC-EEEEEcC---Cc--EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 327 IASISDIKFANDGQ-HLLSRDY---MN--LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 327 ~~~i~~~~~sp~~~-~l~~~~~---~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
..++..+.|+|... .|+-+-. .. -|||-+++++.....+..+.... .+..=-|.|||..|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e-------------~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGE-------------SVGHEFWVPDGSTIW 253 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTE-------------EEEEEEE-TTSS-EE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCc-------------ccccccccCCCCEEE
Confidence 56889999999654 4444421 23 38898887676665554443211 013456899998766
Q ss_pred EEeC-----CCeEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 401 TGSY-----SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 401 s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
--+. +..|.-+|+.+++.. ..... + .+.-+..+.++++
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~-~~~~~---p-~~~H~~ss~Dg~L 296 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERR-RLMEM---P-WCSHFMSSPDGKL 296 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EE-EEEEE-----SEEEEEE-TTSSE
T ss_pred EEeecCCCCceEEEeeCCCCCCce-EEEeC---C-ceeeeEEcCCCCE
Confidence 4332 445677788877432 11111 1 2445555456665
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.33 Score=43.95 Aligned_cols=252 Identities=11% Similarity=0.084 Sum_probs=125.6
Q ss_pred cCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEE
Q 010801 42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 121 (501)
Q Consensus 42 ~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~ 121 (501)
..++.|+.|+++| +.+++...... ..... +. ..|..+..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------------~~~i~--~~------------~~I~ql~v 43 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------------PTRIL--KL------------SSITQLSV 43 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------------------------ceeEe--ec------------ceEEEEEE
Confidence 4678999999998 88998832211 01111 11 34888888
Q ss_pred eecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccc-cccccccCccccC---CCCCCcccccceeccCcceE
Q 010801 122 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-NTLLAEKNFMNEH---NPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 122 ~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~ 197 (501)
. ++-+.+++-+ |+.+.++++..-................. ........+.... .......+.. +....+.
T Consensus 44 l--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v---a~kk~i~ 117 (275)
T PF00780_consen 44 L--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV---AVKKKIL 117 (275)
T ss_pred e--cccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE---EECCEEE
Confidence 7 4445555554 59999999876543321100000000000 0000011111111 1111112222 2244777
Q ss_pred EEeccCce-ee-eeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC-----CCCcccce
Q 010801 198 IANVGNSV-HA-RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-----MDDLTEVI 270 (501)
Q Consensus 198 ~w~~~~~~-~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~v 270 (501)
++...... .. ...+.+ .-...+.+++|. ++.++.|..+...+.|+. .+....+....... ......++
T Consensus 118 i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 118 IYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCCceEEEecC-CCCceEEeCccCCcchhhhcccCCCce
Confidence 77776532 22 344443 234678889988 567888855568888988 33333332111111 00112233
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcE
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i 350 (501)
..+... ++ .+|++- |..-.+.|. .|+......-.|. ....++++. ..||++-.++.|
T Consensus 193 ~~~~~~-~~-e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~----------------~~p~~~~~~--~pyli~~~~~~i 249 (275)
T PF00780_consen 193 GIFQLS-DN-EFLLCY--DNIGVFVNK-NGEPSRKSTIQWS----------------SAPQSVAYS--SPYLIAFSSNSI 249 (275)
T ss_pred EEEEeC-Cc-eEEEEe--cceEEEEcC-CCCcCcccEEEcC----------------CchhEEEEE--CCEEEEECCCEE
Confidence 344433 34 555542 333333343 3332211111222 245566664 458887777789
Q ss_pred EEEEeeCCCCceeEeeccc
Q 010801 351 KLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~ 369 (501)
.||++.+ ++.++.+....
T Consensus 250 EV~~~~~-~~lvQ~i~~~~ 267 (275)
T PF00780_consen 250 EVRSLET-GELVQTIPLPN 267 (275)
T ss_pred EEEECcC-CcEEEEEECCC
Confidence 9999996 88888887543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.98 Score=46.53 Aligned_cols=113 Identities=10% Similarity=0.097 Sum_probs=67.2
Q ss_pred ceEEEEEecCCCcEEEEEeC----------CCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 269 VITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~----------dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
.+.++.|..|...++++|+. .|.|.++.... +++.....+.. .+.+.++..-
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v----------------~Gav~aL~~f- 838 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV----------------KGAVYALVEF- 838 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee----------------ccceeehhhh-
Confidence 34555687773377777754 47788887766 22211111111 2344444322
Q ss_pred CCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 338 DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 338 ~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+|+++|+- ...|++|+..+ .+.++.-..+...+ ..+...-.|..++.|.-=+++.+-..+.
T Consensus 839 ngkllA~I-n~~vrLye~t~-~~eLr~e~~~~~~~---------------~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 839 NGKLLAGI-NQSVRLYEWTT-ERELRIECNISNPI---------------IALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred CCeEEEec-CcEEEEEEccc-cceehhhhcccCCe---------------EEEEEEecCcEEEEeeccceEEEEEEec
Confidence 46666543 37899999976 55554444444443 4677777888999998878877765543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.092 Score=45.68 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=47.0
Q ss_pred cccceEEEEecCCCCEEEEE-cCC----eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCC
Q 010801 217 HDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG 290 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg 290 (501)
+...|.-++.-+||..++.+ ..| .--+--....++.++.+++.+.........|-+++.+.+. .+++ +.-..+
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCCC
Confidence 34566777777888766664 322 1111111123344443333322223344567788888665 4444 444456
Q ss_pred eEEEEEccCCccc
Q 010801 291 FVRLVDMRQSALC 303 (501)
Q Consensus 291 ~i~~wd~~~~~~~ 303 (501)
..-+||..++...
T Consensus 303 ~~vi~da~tG~vv 315 (366)
T COG3490 303 RAVIWDAATGAVV 315 (366)
T ss_pred eEEEEEcCCCcEE
Confidence 6789999998654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.94 Score=43.18 Aligned_cols=123 Identities=10% Similarity=0.033 Sum_probs=77.2
Q ss_pred EEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC---CeEEEEE
Q 010801 222 NSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVD 296 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~~wd 296 (501)
..+++.|+|+.+..+ .++.|.+.|.. .....+ ... .....-......+.++|+| +.+.+.... +.+...|
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~--~~~-~~~~~~~~~P~~i~v~~~g-~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVR--GSV-GSLVGVGTGPAGIAVDPDG-NRVYVANDGSGSNNVLKID 237 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCC-Ccceec--ccc-ccccccCCCCceEEECCCC-CEEEEEeccCCCceEEEEe
Confidence 778999999977776 69999999977 332221 000 0011122334778999999 655544443 5899999
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEee
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~ 366 (501)
..++..... .... +-. ....+..+|+|+++.+.. . +.+.+-|..+ ......+.
T Consensus 238 ~~~~~v~~~---~~~~------------~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~-~~v~~~~~ 292 (381)
T COG3391 238 TATGNVTAT---DLPV------------GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT-DRVVKTGP 292 (381)
T ss_pred CCCceEEEe---cccc------------ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC-Cceeeeec
Confidence 888754321 0111 001 346788999999988773 3 8899988875 45444444
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.2 Score=42.48 Aligned_cols=157 Identities=11% Similarity=0.092 Sum_probs=99.8
Q ss_pred ceEEEEecCCCCEEEEE-c---CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE-EeCCCeEEE
Q 010801 220 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRL 294 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~~ 294 (501)
....++++++++.+..+ . ++++.+.|..+.. ..... ..+- .+ ..++++|+| +.++. -..++.|.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~------~vG~-~P-~~~a~~p~g-~~vyv~~~~~~~v~v 186 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATI------PVGN-TP-TGVAVDPDG-NKVYVTNSDDNTVSV 186 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEE------ecCC-Cc-ceEEECCCC-CeEEEEecCCCeEEE
Confidence 44578999999888876 4 5888888877433 33322 1111 22 789999999 64444 447899999
Q ss_pred EEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC----CcEEEEEeeCCCCceeE-eecc
Q 010801 295 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIH 368 (501)
Q Consensus 295 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~----~~i~lwd~~~~~~~~~~-~~~~ 368 (501)
.|........ ........ ...-..+.++|+|+++....+ +.+...|..+ +..... +...
T Consensus 187 i~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~ 251 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG 251 (381)
T ss_pred EeCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccc
Confidence 9977654321 00000111 134577889999997776543 4777777764 333332 2222
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 416 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~ 416 (501)
.. .+ ..+..+|+|+.+.+... .+.+.+-|..+.
T Consensus 252 ~~-~~--------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 252 SG-AP--------------RGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred cC-CC--------------CceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 21 11 46899999998887744 588999888776
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.3 Score=44.64 Aligned_cols=126 Identities=11% Similarity=0.107 Sum_probs=64.9
Q ss_pred eEEEEecCCCCEEEEE-cC-CeEEEEECCCCCeeeeeeecCCCCCC-CcccceEEEEEecCCCcEEEEEeCCCeEEEE--
Q 010801 221 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLV-- 295 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w-- 295 (501)
...-.|+|+|+.+++. +. ..+++.+.....+. ..+.+...... .....|..+.|+||| ..++... +|.|.+=
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql-~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL-ARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceE-EEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 6667899998877776 32 23444443322222 11112111111 234579999999999 7666554 4677662
Q ss_pred -EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCc
Q 010801 296 -DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP 361 (501)
Q Consensus 296 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~ 361 (501)
....+.........+. .+....+.++.|.+++.+++...++.-.+|.+.-++..
T Consensus 476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence 3223321100000011 11123467899999998665444444445655543443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=1 Score=41.07 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=57.1
Q ss_pred cceeEEEEeeCCCEEEEEcC--CcEEEEEeeC-CC----Cc-eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 328 ASISDIKFANDGQHLLSRDY--MNLKLWDIRM-DS----TP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~-~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
..-+.++||||++.|..++. +.|+-|++.. .+ +. ...+....+.. =.++...+|.+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---------------DG~~vDadG~lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---------------DGMAVDADGNLW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---------------CceEEeCCCCEE
Confidence 34688999999998887743 7888887751 11 11 11111111110 268888889887
Q ss_pred EEEeCCC-eEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 400 ATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 400 ~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
+++-.+| .|.+|+.+ + .+...+......+.+++|--
T Consensus 228 ~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeC
Confidence 6555554 89999988 6 34455555555666666654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.43 Score=42.45 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=86.7
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE-
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD- 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd- 296 (501)
.+.+.+++++++.++.- .++.-.+|-....+..... + ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 67889999999987763 3444444444422322221 1 22367788999998 8887777777767764
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----CCcEEEEEeeCCCCc-eeEeeccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP-VATFKIHEHL 371 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~~~i~lwd~~~~~~~-~~~~~~~~~~ 371 (501)
...+............ ...|..+.+||||..++.-. ++.|.+--+..+..- -..+......
T Consensus 95 ~~~g~~~~~~v~~~~~--------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGL--------------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred cCCCcceeEEeccccc--------------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 3333221100011100 12799999999999888542 477877766532221 1111111000
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
.. .....++.++|.+++.+++.+...+
T Consensus 161 ~~--------~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 161 AP--------PLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred cc--------cccCcceeeeecCCCEEEEEeCCCC
Confidence 00 0011226899999998877665543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.024 Score=34.86 Aligned_cols=30 Identities=20% Similarity=0.699 Sum_probs=27.2
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~ 145 (501)
..|..++|+ |..+++|.++.||.|.++.+.
T Consensus 12 ~~v~~~~w~--P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWC--PTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEEC--CCCCEEEEEECCCeEEEEECC
Confidence 679999998 778899999999999999984
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.043 Score=56.29 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=73.5
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 359 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~ 359 (501)
-.++.|+..|.+...|+... +.. -.... .-.++|++++|+.+|++++.| .+|.|.+||... +
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~---~~~ne------------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGP---LHQNE------------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cch---hhcCC------------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence 57888999999999888764 110 01111 014689999999999999998 569999999986 7
Q ss_pred CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
++++.+..+..+.. .+..+.+..++..+.++...|. +|.+.
T Consensus 163 k~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 163 KILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 88888877666542 1235566666777888888776 56653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.23 Score=49.52 Aligned_cols=88 Identities=17% Similarity=0.382 Sum_probs=58.1
Q ss_pred cchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCc
Q 010801 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (501)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (501)
..+|.....+... -..++-+.-|.-++.-++-+...++.|||...+..
T Consensus 16 ~~~w~~t~~~~T~--------i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l------------------------ 63 (631)
T PF12234_consen 16 KIEWLLTSTFETG--------ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL------------------------ 63 (631)
T ss_pred eEEEEEEEEEecC--------CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE------------------------
Confidence 3456666555422 12344455555555544444556899999887642
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEec
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~ 144 (501)
++...+. .. +.|.++.|...|+++.+++.+..+.|.++--
T Consensus 64 -E~~~~f~-~~------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 64 -EYEESFS-ED------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred -EEeeeec-CC------------CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 2223332 22 7799999998899999999999999999853
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.48 Score=42.12 Aligned_cols=139 Identities=13% Similarity=0.133 Sum_probs=83.8
Q ss_pred ceeEEEEeeCCCEEEEEc--C--CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 329 SISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
.+.+.+++++++.++... + ..++++... +.......+. .. +.-.|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~-~l----------------~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG-SL----------------TRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC-cc----------------ccccccCCCCEEEEEcC
Confidence 688999999999887644 4 455555432 3333333333 21 57899999888877777
Q ss_pred CCeEEEEe-cCCCCcceEEEeccc--CcccceeeccCCccccCccceeeeecccc--eeec------cccC---Ccc---
Q 010801 405 SNLLRIFS-HGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLYRQ--AHEN------SSSG---HHE--- 467 (501)
Q Consensus 405 dg~i~iwd-~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~~~~~~~--~~iw------~~~~---~~~--- 467 (501)
+...+++. ..++......+.... ..|..+.++| +|.. ++....++ .++| +.+. .+.
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp--DG~R-----vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP--DGTR-----VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECC--CCcE-----EEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 77777774 333433333333332 2788999998 6665 44444322 2666 1122 111
Q ss_pred -cccccCCCeEEEEEccCCCEEEEeeC
Q 010801 468 -LSYNLSSKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 468 -~~~~~~~~i~~~~~sp~~~~la~~~~ 493 (501)
........+++++|.+++.+++.+..
T Consensus 159 ~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred EecccccCcceeeeecCCCEEEEEeCC
Confidence 11123468899999999998877763
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.4 Score=38.99 Aligned_cols=183 Identities=10% Similarity=0.139 Sum_probs=108.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|.++.|+ |+.+.|.+......-.|+=..+|+.+......
T Consensus 86 ~nvS~LTyn--p~~rtLFav~n~p~~iVElt~~GdlirtiPL~------------------------------------- 126 (316)
T COG3204 86 ANVSSLTYN--PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT------------------------------------- 126 (316)
T ss_pred ccccceeeC--CCcceEEEecCCCceEEEEecCCceEEEeccc-------------------------------------
Confidence 569999998 67778888777777777766677766554221
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeee--ecCCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV--DMKPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~v 270 (501)
+ -.....+++..+|++.++- .++.+.++.++......... .++.......+...
T Consensus 127 ----------------------g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf 183 (316)
T COG3204 127 ----------------------G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF 183 (316)
T ss_pred ----------------------c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc
Confidence 1 1223457777788777777 89999999888544333221 11212222225667
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEEcC-C
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-M 348 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~~~-~ 348 (501)
-.++|+|.. ..|..+-+-.-+.||....... .+..| ....+...-.-.-..+.++.|++... +|+-+.. +
T Consensus 184 EGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~-~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr 255 (316)
T COG3204 184 EGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVH-ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR 255 (316)
T ss_pred eeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccc-cccCcccccceEeeccccceecCCCCcEEEEecCCc
Confidence 899999998 8888888877788887664321 11110 00000000000013578888987544 4444433 6
Q ss_pred cEEEEEeeCCCCceeEeecc
Q 010801 349 NLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~ 368 (501)
.+.-.|.. +.++..+.-+
T Consensus 256 ~l~Evd~~--G~~~~~lsL~ 273 (316)
T COG3204 256 RLLEVDLS--GEVIELLSLT 273 (316)
T ss_pred eEEEEecC--CCeeeeEEec
Confidence 66666664 6656555433
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.3 Score=44.81 Aligned_cols=76 Identities=9% Similarity=0.092 Sum_probs=51.7
Q ss_pred cccceEEEEec--CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC--Cc---EEEEEeC
Q 010801 217 HDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSS 288 (501)
Q Consensus 217 ~~~~v~~l~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~---~l~~~~~ 288 (501)
-...+++++++ ...++||++ ....|.||-.......... ..-..+...|.+|+|-++. +. .+++++-
T Consensus 162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 34588999998 788888888 7778888766532111110 0012356678899997654 12 7778888
Q ss_pred CCeEEEEEc
Q 010801 289 RGFVRLVDM 297 (501)
Q Consensus 289 dg~i~~wd~ 297 (501)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.25 Score=49.63 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=37.4
Q ss_pred cceeEEEEeeCCCEEEEEc-------CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcE
Q 010801 328 ASISDIKFANDGQHLLSRD-------YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 398 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-------~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 398 (501)
..+.+.+++|||+.++... +. .|.+++.. +.......+.. . +.-.|+|||+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~~-~----------------t~PsWspDG~~ 410 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGHS-L----------------TRPSWSLDADA 410 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCCC-C----------------CCceECCCCCc
Confidence 3678999999999887542 33 45555542 33322223222 1 57999999998
Q ss_pred EEEEeCC
Q 010801 399 FATGSYS 405 (501)
Q Consensus 399 l~s~~~d 405 (501)
|++....
T Consensus 411 lw~v~dg 417 (591)
T PRK13616 411 VWVVVDG 417 (591)
T ss_pred eEEEecC
Confidence 8887643
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.74 Score=46.02 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=71.6
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEeCCCeEEEEE
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~~wd 296 (501)
...-+.-+.-++..++. ...++.|||.+........ .+ ...+.|.++.|. |++ +.+++.+..+.|.+|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEE
Confidence 33344444555555555 6778999999843322221 12 346789999986 677 7788888888999985
Q ss_pred ccCC-----cccccccceeecccccCCCcceeeecc-cceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 297 MRQS-----ALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 297 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
-... ......++.+. +..|+ .+|.+..|.++|.+++++ ++.+.|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~-----------i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKID-----------ISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEE-----------eecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 4221 11111111111 12333 578999999999766544 4789998754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.6 Score=38.70 Aligned_cols=177 Identities=12% Similarity=0.142 Sum_probs=103.9
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 110 (501)
...|+++.|+|+.+.|++......-.|+=...|+.+ -...+.+ |+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli-------------------------rtiPL~g~~D--------- 130 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI-------------------------RTIPLTGFSD--------- 130 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceE-------------------------EEecccccCC---------
Confidence 345999999999999888777766666655555432 0111222 33
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
--.|++. .++++.++--.++.+.++.+............
T Consensus 131 -----pE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~---------------------------------- 169 (316)
T COG3204 131 -----PETIEYI--GGNQFVIVDERDRALYLFTVDADTTVISAKVQ---------------------------------- 169 (316)
T ss_pred -----hhHeEEe--cCCEEEEEehhcceEEEEEEcCCccEEeccce----------------------------------
Confidence 3356775 45566655568899998887655322111000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecC--CCCCCCcc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLT 267 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~ 267 (501)
.-.+... .........++|.|..+.|..+ .-+-+.||.++.....+..-... .....-.-
T Consensus 170 ----------------~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 170 ----------------KIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred ----------------EEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 0011111 1225677889999999999998 77778887766222122110000 00000112
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
..|.++.|++..+.+|+.+.+++.+.-.|....
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 356788888766477787888888888887654
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.054 Score=55.60 Aligned_cols=83 Identities=11% Similarity=0.020 Sum_probs=59.0
Q ss_pred CCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 339 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 339 ~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+-+++.|++ |.+-..|...+-.+ + |.+.. ...+|++++|+.+|++++.|-.+|.|.+||+..+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~---~--~~ne~----------v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~- 162 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGP---L--HQNER----------VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA- 162 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccch---h--hcCCc----------cCCcceeeEecCCCceeccccCCCcEEEEEccCC-
Confidence 557888877 99999988632111 1 11110 1123489999999999999999999999999987
Q ss_pred cceEEEecccCcccceeecc
Q 010801 418 AGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~ 437 (501)
.+.+.+..|..+...+.+..
T Consensus 163 k~l~~i~e~~ap~t~vi~v~ 182 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVG 182 (1206)
T ss_pred cceeeeeecCCccceEEEEE
Confidence 44477777777777766654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=2 Score=39.04 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=61.9
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....|.+|.|.|++.+.+.+..|.|+.=+.......... ...........+..++|.+++ ...++|+. |.+ +.
T Consensus 184 ~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~-G~l-~~ 257 (302)
T PF14870_consen 184 NSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGGS-GTL-LV 257 (302)
T ss_dssp -SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEEST-T-E-EE
T ss_pred CccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeCC-ccE-EE
Confidence 3457899999999998888779999998872212222111 000112233457899999987 77776554 433 33
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
....++ .++.... . ..-...+..+.|.++.+-++.|.+|.|--|
T Consensus 258 S~DgGk-------tW~~~~~-~------~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 258 STDGGK-------TWQKDRV-G------ENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ESSTTS-------S-EE-GG-G------TTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred eCCCCc-------cceECcc-c------cCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 444442 2222000 0 001245889999988888999988877554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.3 Score=39.60 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=36.1
Q ss_pred ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC
Q 010801 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 278 (501)
..++|+|.|+|+++++-..|.|++++.. +........+. ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence 4578999999987776699999999933 33212221111 122334567899999995
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=95.35 E-value=2.9 Score=40.42 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=37.6
Q ss_pred ccceEEEEecCCCCEEEEEc-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC
Q 010801 218 DFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 278 (501)
-...+.|+|.|||++|++-. .|.|++++..... ......+.......-......|+++|+
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCC
Confidence 34678899999998888775 7999999765222 111111111001112566789999987
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.32 E-value=3.4 Score=41.01 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=21.9
Q ss_pred CEEEEeeCCCeEEEEeccccceeeee
Q 010801 128 SMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 128 ~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
..++.++.++.|.-+|.++++.....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeee
Confidence 67888888999999999999876654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.77 Score=44.53 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=85.9
Q ss_pred ccceEEEEecCCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC---cEEEEEeCCCe
Q 010801 218 DFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGF 291 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~---~~l~~~~~dg~ 291 (501)
-.++..++|....+.+++. .+|.+++=|...- +.-..|..+.|.|-+. --|+.......
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~vi---------------GqFEhV~GlsW~P~~~~~~paLLAVQHkkh 83 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKVI---------------GQFEHVHGLSWAPPCTADTPALLAVQHKKH 83 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCccEe---------------eccceeeeeeecCcccCCCCceEEEeccce
Confidence 3578889998444444554 4666665443311 1223588999998641 13444466778
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeE-eeccc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHE 369 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~ 369 (501)
|.+|-+......... .....--+- +.. ..---..+.|+|....|+.-+. ..-.+++++.++..+.. +++.
T Consensus 84 VtVWqL~~s~~e~~K-~l~sQtcEi---~e~---~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~- 155 (671)
T PF15390_consen 84 VTVWQLCPSTTERNK-LLMSQTCEI---REP---FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS- 155 (671)
T ss_pred EEEEEeccCcccccc-ceeeeeeec---cCC---cccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence 999988633211110 000000000 000 0112356889999988876543 33355666654444332 3322
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEec
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSH 413 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~ 413 (501)
+.+ .+.+|.+||+.|+.+ +..=.-+|||-
T Consensus 156 G~I---------------hCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 GLI---------------HCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceE---------------EEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 222 799999999887754 33345688884
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.077 Score=44.62 Aligned_cols=105 Identities=13% Similarity=0.022 Sum_probs=62.9
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE-EEeeCCCEEEEE-cCCcEEEEEeeCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI-KFANDGQHLLSR-DYMNLKLWDIRMD 358 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~sp~~~~l~~~-~~~~i~lwd~~~~ 358 (501)
..+++|+.+|.|.+|....-.... ..+.. + ...|..+ .-..++.+..++ .++.||.|++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~---d~~~s------------~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p- 133 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHS---DRVCS------------G-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP- 133 (238)
T ss_pred ceEEeecccceEEEecCCccchHH---Hhhhc------------c-cccceeccccccccceeEEeccCCceeeecccc-
Confidence 679999999999999876321110 11111 0 1122222 222334455555 569999999985
Q ss_pred CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE--eCCCeEEEEecCCC
Q 010801 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVG 416 (501)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~ 416 (501)
.+.+.....|.... ...+..+..+++|+.. |.|..++.|++..-
T Consensus 134 ~k~~g~~g~h~~~~--------------~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 134 NKVLGYVGQHNFES--------------GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CceeeeeccccCCC--------------cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 77776666665321 0345555566777777 78888888888653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.1 Score=41.74 Aligned_cols=71 Identities=11% Similarity=-0.039 Sum_probs=42.1
Q ss_pred EEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
.+.|+|....|+.= ....-.++++......++. + + ...+.|.|.+|.+||.++++..+..=.-++||-...
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 46789988887764 3223334555533433332 1 2 245679999999999444444444445678886554
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.12 Score=30.77 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=26.9
Q ss_pred cceEEEEEecCCC--cEEEEEeCCCeEEEEEccC
Q 010801 268 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 268 ~~v~~v~~~p~~~--~~l~~~~~dg~i~~wd~~~ 299 (501)
+.+++++|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3589999998763 5888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.4 Score=36.68 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=85.2
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
...+++.|+..+.+.--|..+|... -.+.+. ..|.+-+..
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~-------------------------We~ilg---------------~RiE~sa~v 61 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLI-------------------------WEAILG---------------VRIECSAIV 61 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEE-------------------------eehhhC---------------ceeeeeeEE
Confidence 3567888999999888898887642 111111 334433332
Q ss_pred ecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 123 ~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
-|++++.|+..|.+++.+..+|...... .
T Consensus 62 ---vgdfVV~GCy~g~lYfl~~~tGs~~w~f------------------------------------------------~ 90 (354)
T KOG4649|consen 62 ---VGDFVVLGCYSGGLYFLCVKTGSQIWNF------------------------------------------------V 90 (354)
T ss_pred ---ECCEEEEEEccCcEEEEEecchhheeee------------------------------------------------e
Confidence 3668999999999999999998643321 1
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
. ...-.+ .....+++..+.+| .|+..+..|..+.+...+. +..+ ....+-+..|-. .
T Consensus 91 ~------------~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVyks------kcgG--~~f~sP~i~~g~-~ 148 (354)
T KOG4649|consen 91 I------------LETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS------KCGG--GTFVSPVIAPGD-G 148 (354)
T ss_pred e------------hhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEec------ccCC--ceeccceecCCC-c
Confidence 0 001111 12346788899999 9999999999855544431 1222 222333455522 3
Q ss_pred EEEEEeCCCeEEEEEccC
Q 010801 282 LLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 282 ~l~~~~~dg~i~~wd~~~ 299 (501)
.|..+...|.+.--....
T Consensus 149 sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 149 SLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eEEEEeccceEEEEccCC
Confidence 455556666655444443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.6 Score=41.38 Aligned_cols=112 Identities=10% Similarity=0.027 Sum_probs=55.3
Q ss_pred ceEEEEEecCCCcEEEEEe-----------CCC-eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 269 VITSAEFHPIYCNLLAYSS-----------SRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~-----------~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
....++|.++| +++++-. ..+ .|.+++-.++.-......++.. .-.....+++.
T Consensus 15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-------------~l~~p~Gi~~~ 80 (367)
T TIGR02604 15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-------------ELSMVTGLAVA 80 (367)
T ss_pred CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-------------CCCCccceeEe
Confidence 45789999999 8777643 223 6777765433211111122222 12345889999
Q ss_pred eCCCEEEEEcCCcEE-EEEeeCCC----CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 337 NDGQHLLSRDYMNLK-LWDIRMDS----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 337 p~~~~l~~~~~~~i~-lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
++| ++++. ...|. +.|...++ +....+.+..... .+.... ...+.|.|||.+.++-+.
T Consensus 81 ~~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-----~~~~~~---~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 81 VGG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQI-----NNHHHS---LNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred cCC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCC-----Cccccc---ccCceECCCCCEEEeccc
Confidence 998 55543 33444 33543211 1111111111100 000000 157999999988776553
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.32 Score=50.66 Aligned_cols=62 Identities=5% Similarity=0.014 Sum_probs=42.2
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 285 (501)
....++++|+|.|+.++.| ..|++.-|... .. ....+. .+...+ ...|.+|+|-... .++++
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-le-ik~~ip-~Pp~~e--~yrvl~v~Wl~t~-eflvv 260 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LE-IKSEIP-EPPVEE--NYRVLSVTWLSTQ-EFLVV 260 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecc-cc-eeeccc-CCCcCC--CcceeEEEEecce-eEEEE
Confidence 4578899999999999999 99999988766 22 111111 111111 5789999998775 55443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.2 Score=45.88 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=57.4
Q ss_pred cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccccc-----ccccccCCCCCcceeeEEEEcCC---CcEE
Q 010801 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR-----PKLCDLYNNDSIFDKFECSVSGD---GLHF 399 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~---~~~l 399 (501)
-.|..+.++|+|++|+..+...|.|-.+.........+.+....+ +.-..++.......+..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468999999999999977666666666632100011111110000 00001111222224478999996 5789
Q ss_pred EEEeCCCeEEEEecCCCCcceEEEe
Q 010801 400 ATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+.=..|+++|+||+.......+++.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999999987655544443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.2 Score=40.48 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=55.4
Q ss_pred cceEEEEecCCCCEEEEE-c-----------C-CeEEEEECCCC-Cee--eeeeecCCCCCCCcccceEEEEEecCCCcE
Q 010801 219 FNINSISNNSDCETFVSA-D-----------D-LRINLWNLEIS-DQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~-----------d-~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
.....|+|.++|+++++- . . +.|.+++-... +.. ..+ +...-.....+++.+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G--- 83 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG--- 83 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC---
Confidence 456689999999988774 1 1 26766654322 221 122 11122345788898876
Q ss_pred EEEEeCCCeEEEEEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 283 LAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
|++++.....++.|........ ....+++.... .. ..+......++|.|||.+.++
T Consensus 84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~--~~----~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGG--QI----NNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCC--CC----CcccccccCceECCCCCEEEe
Confidence 4444544433344543321111 11122222000 00 001245788999999987664
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.21 Score=29.78 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.1
Q ss_pred cceEEEEEccC-C--CEEEEEecCCcEEEEEecC
Q 010801 33 DIVSAIEFDKT-G--DYLAVGDRGGRVILFETVG 63 (501)
Q Consensus 33 ~~v~~v~~s~~-g--~~latg~~dg~i~iw~~~~ 63 (501)
++|++++|||+ + ++||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899888889999999884
|
It contains a characteristic DLL sequence motif. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.96 E-value=2.4 Score=40.05 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=58.2
Q ss_pred CcceEEEeccCceeeeeeEeecCCc-ccceEEEEec--CCCCEEEE-E-cCCeEEEEECCCCCe--eeeeeecCCCCCC-
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAH-DFNINSISNN--SDCETFVS-A-DDLRINLWNLEISDQ--CFNIVDMKPSNMD- 264 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~-~~~v~~l~~~--~~~~~l~~-~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~- 264 (501)
+..+.+||+......+.+. .+. ......+.|. |+...-++ + -...|..|-....+. ..+++++.....+
T Consensus 221 G~~l~vWD~~~r~~~Q~id---Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTID---LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETTTTEEEEEEE---S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cCeEEEEECCCCcEeeEEe---cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 4467777777643333332 222 2345567774 44443333 3 556666664422322 2233333322111
Q ss_pred ----C-------cccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCccee--eecccce
Q 010801 265 ----D-------LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF--TEIIASI 330 (501)
Q Consensus 265 ----~-------~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i 330 (501)
. -..-|+.+..+.|. ++|.+.+ ..|.|+.||+.........-+++-+-.......... ....+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred ccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 1 13557999999998 7766655 499999999987533211112221100000000000 0112345
Q ss_pred eEEEEeeCCCEEEEE
Q 010801 331 SDIKFANDGQHLLSR 345 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~ 345 (501)
.-+..|.||+.|...
T Consensus 377 qMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVT 391 (461)
T ss_dssp --EEE-TTSSEEEEE
T ss_pred CeEEEccCCeEEEEE
Confidence 677888899887754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.87 E-value=6.7 Score=37.98 Aligned_cols=115 Identities=11% Similarity=0.154 Sum_probs=65.8
Q ss_pred ceEEEEecCCCCEEEEE--cC----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC---
Q 010801 220 NINSISNNSDCETFVSA--DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--- 290 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--- 290 (501)
.+...+++|+|++++.+ .. ..++++|+.++ +.+.- .+.. .....+.|.+++ +.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d------~i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPD------GIEN--PKFSSVSWSDDG-KGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEE------EEEE--EESEEEEECTTS-SEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCC------cccc--cccceEEEeCCC-CEEEEEEeCcccc
Confidence 33467889999999875 23 35999999954 33321 0111 112349999998 6655554332
Q ss_pred --------eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE--c--C-CcEEEEEeeC
Q 010801 291 --------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--D--Y-MNLKLWDIRM 357 (501)
Q Consensus 291 --------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~--~--~-~~i~lwd~~~ 357 (501)
.|..|.+.+.... ...+++. .. .......+..++|+++|+.. + + ..+++.|+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~--d~lvfe~-~~----------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSE--DELVFEE-PD----------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG---EEEEC--TT----------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cccCCCCcEEEEEECCCChHh--CeeEEee-cC----------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3667776654321 1134444 11 01125678899999998753 2 3 4577778764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.28 Score=41.43 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=34.2
Q ss_pred CCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc-cceEEEEEecCCCcEEEEE--eCCCeEEEEEcc
Q 010801 228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYS--SSRGFVRLVDMR 298 (501)
Q Consensus 228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~--~~dg~i~~wd~~ 298 (501)
.++.+..++ .++.|+.|++. ..+.+.. ...|+ .++.....+..+ +.++++ |.|..++.|++.
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~-p~k~~g~-------~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIK-PNKVLGY-------VGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccceeEEeccCCceeeeccc-cCceeee-------eccccCCCcceeEEecCC-ceEEeeccccchhhhhcchh
Confidence 355566677 99999999998 3333332 23344 333333333333 445444 455555555554
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.38 Score=41.58 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=52.2
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd 354 (501)
+..++ ++|++.+.+|.+++||+.+++.......+...-.... ... ......|..+.++.+|.-|++-++|..+.|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-ccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44556 7899999999999999999875543321111100000 000 0234678899999999888887778899998
Q ss_pred eeC
Q 010801 355 IRM 357 (501)
Q Consensus 355 ~~~ 357 (501)
...
T Consensus 94 ~~L 96 (219)
T PF07569_consen 94 PDL 96 (219)
T ss_pred ccc
Confidence 763
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.80 E-value=9.5 Score=39.53 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=53.6
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCC----------CCe--eeeeeecCCCCC-CCcccceEEEEEecCC--CcE
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEI----------SDQ--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CNL 282 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~----------~~~--~~~~~~~~~~~~-~~~~~~v~~v~~~p~~--~~~ 282 (501)
.-.|..+.++|+|.+++......|.|-.+.. ++. ..+++.+....+ ..+...|..+.|+|.+ +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3478889999999988876333444433321 011 122222222212 2345689999999974 368
Q ss_pred EEEEeCCCeEEEEEccCCc
Q 010801 283 LAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~ 301 (501)
|++-+.|+++|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8889999999999997643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=6.6 Score=36.65 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=68.4
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.-...++++.+.++++.++++..|.+.+=..+ .+...+..... .......+.++.+.|++ ..++ ++.+|.+..
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~~- 284 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EIWA-GGGNGTLLV- 284 (334)
T ss_pred CCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CEEE-EcCCCeEEE-
Confidence 34567889999999998888877776542233 33333211000 01122357888999876 6555 456675543
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEe
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 355 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~ 355 (501)
....++ .|.. ...+ .+-......+.|..+++.+++|..|.|--|+-
T Consensus 285 S~d~G~-------tW~~-~~~~------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 285 SKDGGK-------TWEK-DPVG------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred eCCCCC-------CCeE-CCcC------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 333332 2221 0000 00123577888888888888888888877753
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.97 E-value=11 Score=38.02 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=52.8
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEE
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 274 (501)
.|++++.. ++.+....-.|. .+-.+.|+.+..+|+...+|++++|++- +.. ..... ...+.....|..+.
T Consensus 65 ~I~If~~s----G~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~-ie~~s---vg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 65 YIRIFNIS----GQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL-GEF-IESNS---VGFESQMSDIVECR 134 (829)
T ss_pred eEEEEecc----ccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc-hhh-hcccc---cccccccCceeEEE
Confidence 46666655 334443323343 7888999988877777799999999987 332 21100 01233344566666
Q ss_pred EecCCCcEEEEEeCCCeEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~w 295 (501)
+..+| +++-..+|.+.+-
T Consensus 135 ~f~~G---Vavlt~~g~v~~i 152 (829)
T KOG2280|consen 135 FFHNG---VAVLTVSGQVILI 152 (829)
T ss_pred EecCc---eEEEecCCcEEEE
Confidence 66677 5555566666554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.9 Score=45.27 Aligned_cols=103 Identities=10% Similarity=-0.026 Sum_probs=66.8
Q ss_pred cceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 219 FNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
....++.|+|.-..- +.+ .|+.|++..+....+... -.......++++|+|.| +.++.|...|++.-|-
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~--------s~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT--------SFPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYE 226 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhc--------ccCcccceeeEEecccc-ceeeEecCCCeEEEee
Confidence 345577888764433 345 899999887763333222 12345678999999999 9999999999998886
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
..-... +.+.. ++... ...|.+++|-....++++
T Consensus 227 P~leik-----~~ip~---Pp~~e------~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 227 PSLEIK-----SEIPE---PPVEE------NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccccee-----ecccC---CCcCC------CcceeEEEEecceeEEEE
Confidence 543211 11111 11000 357999999988888775
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.2 Score=50.63 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=55.2
Q ss_pred cceEEEeccCceeee----eeEeecCCcccceEEEEecC---CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 194 MATKIANVGNSVHAR----CQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~----~~~~~~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
|.+.+|+++.- .++ ..-.........+.-+.|.| +.-++..+ ++++|++.+.+...+ .+ +.+
T Consensus 153 g~lfVy~vd~l-~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l-------~rs 222 (1283)
T KOG1916|consen 153 GELFVYDVDVL-QGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SL-------FRS 222 (1283)
T ss_pred hhhheeehHhh-ccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HH-------HHh
Confidence 45667877652 221 11111123334445555544 55667777 888988877663222 21 333
Q ss_pred cccceEEEE-----------EecCCCcEEEEEeCCCeEEEEEcc
Q 010801 266 LTEVITSAE-----------FHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 266 ~~~~v~~v~-----------~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
|...+..++ .+||| ..|+.++.||.++.|-+.
T Consensus 223 Hs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 223 HSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeee
Confidence 554444433 57898 999999999999888664
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=13 Score=37.68 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=19.0
Q ss_pred CCcEEEEEeCCC--eEEEEecCCCCc
Q 010801 395 DGLHFATGSYSN--LLRIFSHGVGSA 418 (501)
Q Consensus 395 ~~~~l~s~~~dg--~i~iwd~~~~~~ 418 (501)
++++.+.|+.|| .+..||..+.+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 788899999888 677788777643
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.56 E-value=6.1 Score=33.83 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=62.3
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEE--ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY 347 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~ 347 (501)
+.++|+.+...+.++-+.+-.|.-|| ..++....+. .+++..+..+.. .-.-..++..-+|++.++. +.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~-~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~Va~~ng 232 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK-VIFDLRKSQPFE-------SLEPDGMTIDTEGNLYVATFNG 232 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcc-eeEEeccCCCcC-------CCCCCcceEccCCcEEEEEecC
Confidence 57889988744555667788887787 6666443221 233331111110 0122344455577776666 44
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
++|...|..+ ++.+.++.-....+ +++||--.
T Consensus 233 ~~V~~~dp~t-GK~L~eiklPt~qi---------------tsccFgGk 264 (310)
T KOG4499|consen 233 GTVQKVDPTT-GKILLEIKLPTPQI---------------TSCCFGGK 264 (310)
T ss_pred cEEEEECCCC-CcEEEEEEcCCCce---------------EEEEecCC
Confidence 9999999987 99998888665544 78888643
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.41 E-value=11 Score=36.33 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=62.4
Q ss_pred EEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeec
Q 010801 234 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (501)
Q Consensus 234 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 312 (501)
+.| ++..|.-.|.+..+..+.....+ ... ......+..-..+ .+++.++..|-|++||.-.-+.. ..
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esK--dY~-tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAK----ta--- 598 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESK--DYK-TKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAK----TA--- 598 (776)
T ss_pred EEeecccceEEecccccCCceeeeeeh--hcc-ccccccccccccC--ceEEEecCCCceeeehhhcchhh----hc---
Confidence 446 77777777777555444332111 111 1122233333333 48999999999999995432211 11
Q ss_pred ccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 313 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
+++....|..+..+.+|+++++.....+-+-|++
T Consensus 599 ----------lP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 599 ----------LPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ----------CcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1233568999999999999988777888888875
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.27 E-value=8.4 Score=32.71 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=71.1
Q ss_pred EEEEeeCCCEEEEEcCCcEEEEEeeC-CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC---C-
Q 010801 332 DIKFANDGQHLLSRDYMNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---N- 406 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~~~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g- 406 (501)
.+.-.+.+.++++.....|.+|++.. ..+++.+|..-... ..+.++..|.+|+|-=.+ .
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V----------------~~l~y~~~GDYlvTlE~k~~~~~ 85 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRV----------------LQLVYSEAGDYLVTLEEKNKRSP 85 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhhe----------------eEEEeccccceEEEEEeecCCcc
Confidence 33333323344444558899999972 34556666644322 689999999999976442 2
Q ss_pred --eEEEE---ecC--CCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEE
Q 010801 407 --LLRIF---SHG--VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL 479 (501)
Q Consensus 407 --~i~iw---d~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~ 479 (501)
.+|+| ... ........+-+|... ++.... ...+........+.++.++
T Consensus 86 ~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~----------------------~~~~~~---~~~qleiiElPl~~~p~ci 140 (215)
T PF14761_consen 86 VDFVRAYFNWRSQKEENSPVRVRIAGHRVT----------------------PSFNES---SKDQLEIIELPLSEPPLCI 140 (215)
T ss_pred ceEEEEEEEhhhhcccCCcEEEEEcccccc----------------------cCCCCc---cccceEEEEecCCCCCCEE
Confidence 45664 322 111111122222110 000000 0000111122345678899
Q ss_pred EEccCCCEEEEeeCCeEEEEe
Q 010801 480 AWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 480 ~~sp~~~~la~~~~~~~~i~~ 500 (501)
+.+|-..-|++|+++.+.+|.
T Consensus 141 aCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 141 ACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EecCCCCCEEEEcCCEEEEEE
Confidence 999998889999999999986
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.27 E-value=19 Score=36.87 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=89.3
Q ss_pred CCEEEEEcCCeEEEEECCCCCeeee-----eeecCCCCCC---------CcccceEEEEEecCC-CcEEEEEeCCCeEEE
Q 010801 230 CETFVSADDLRINLWNLEISDQCFN-----IVDMKPSNMD---------DLTEVITSAEFHPIY-CNLLAYSSSRGFVRL 294 (501)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~v~~v~~~p~~-~~~l~~~~~dg~i~~ 294 (501)
..+++.|..+.|.||+.+.-.+... .+..++.... .....|+.+....-| ...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 6688888889999999874332111 1111111000 011234555444322 268899999999999
Q ss_pred EEccCCcccccccceeeccccc----CCCcc-eeeecccceeEEEEe--eCCCEEEEEcC-CcEEEEEeeCCCCceeEee
Q 010801 295 VDMRQSALCDHSARILRDAAES----HGSKS-FFTEIIASISDIKFA--NDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~h~~~i~~~~~s--p~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~ 366 (501)
|.+..--... ......... ..... +........++++++ ...++||+++. ..|.||-............
T Consensus 129 Yyt~~I~~~i---~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 129 YYTETIIEAI---ERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEHHHHHHHH---HhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 9774310000 000000000 00000 112234688999999 78888988876 7788876653111111100
Q ss_pred --ccccccccccccCCCCCcceeeEEEEcCCC---c---EEEEEeCCCeEEEEec
Q 010801 367 --IHEHLRPKLCDLYNNDSIFDKFECSVSGDG---L---HFATGSYSNLLRIFSH 413 (501)
Q Consensus 367 --~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~---~l~s~~~dg~i~iwd~ 413 (501)
.+...+ -+++|-++. . +|++++-.|.+.+|++
T Consensus 206 s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 112222 367776643 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.25 E-value=19 Score=39.00 Aligned_cols=174 Identities=12% Similarity=0.120 Sum_probs=88.6
Q ss_pred EEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE--------ecCCCcEEEEEeCCCeEE
Q 010801 222 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--------HPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--------~p~~~~~l~~~~~dg~i~ 293 (501)
..+-+-|.=...-..-|+.+.+|+.++++.... +.+....|..|.. .|.= +++++...--.|.
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~--------~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~ 152 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESDNELAE--------YDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIV 152 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCCCcccc--------ccchhhhheeeeeecCCCCcchhhh-heeEEecccceEE
Confidence 344455554444455688999999996444322 3444444544432 2332 3344444444566
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCC------CCceeEee-
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD------STPVATFK- 366 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~------~~~~~~~~- 366 (501)
++-+.-.+..... ..+..+ -.+.-....|+++....+|+.+.+|.|| .+|.+... ++.-..+.
T Consensus 153 ilgV~~~~~~~~~-~~f~~~-------~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 153 ILGVSFDEFTGEL-SIFNTS-------FKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred EEEEEeccccCcc-cccccc-------eeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccC
Confidence 6544322211100 111110 0001113578899988999999999888 55554321 00000000
Q ss_pred ---ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 367 ---IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 367 ---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.....++.+..+. .....++..+.....-..|.+-+..|+|.+|++..
T Consensus 223 t~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred chhHHHHhhhhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0000111111111 01111236888887777888999999999999987
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.3 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=25.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK 150 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~ 150 (501)
.++..+. .++.++++.+.+|.+++||+.+++..
T Consensus 13 s~~~~l~----~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 13 SPVSFLE----CNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CceEEEE----eCCCEEEEEeCCCeEEEEECCCCeec
Confidence 4455555 46789999999999999999987753
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.4 Score=41.38 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=82.7
Q ss_pred ccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee-EEEEcCCCcEEEEEeCC
Q 010801 327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF-ECSVSGDGLHFATGSYS 405 (501)
Q Consensus 327 ~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l~s~~~d 405 (501)
...+..+-..|||+.+..-+..++.++++.+ +.+..-+--+.. .++....|+ .+..-..|.-|..++.|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~--r~l~~rkl~~ds--------pg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDK--RSLQIRKLVDDS--------PGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecc--cccchhhhhhcC--------CCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3568888999999999877668899999874 222111111100 000110011 12222356668889999
Q ss_pred CeEEEE-ecCCCCcc-eEE---EecccCcccceeeccCCccccCccceeeeecccce-eec-cccCCcccccccCCCeEE
Q 010801 406 NLLRIF-SHGVGSAG-GIT---VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLH 478 (501)
Q Consensus 406 g~i~iw-d~~~~~~~-~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw-~~~~~~~~~~~~~~~i~~ 478 (501)
|.|.-| |+..+... ... ++-...++ -...|..+.+- +++-...|. .++ ++.+........-+.+..
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~--~~l~pe~~rkg-----F~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~ 362 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEV--QFLLPETNRKG-----FYSLYRNGTLQSFYSTSEKLLLFERAYQAPQL 362 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccc--eeeccccccce-----EEEEcCCCceeeeecccCcceehhhhhcCcce
Confidence 999887 44332111 111 11111111 11222222222 455555555 555 333222222222235667
Q ss_pred EEEccCCCEEEEeeCCeEEEEe
Q 010801 479 LAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 479 ~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+++||.+++|++-..+++.++.
T Consensus 363 ~~~Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 363 VAMSPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred eeeCcccchheeecCCceEEEE
Confidence 8999999999998888887764
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.91 E-value=11 Score=33.36 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=56.9
Q ss_pred EEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 222 ~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
+.++ .+++.|+.+ ....++.+|..+-. ..+.+.+.. -...-..++.+.|. +| .+.|=.-....|...|..+|
T Consensus 133 WGLt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~--~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 133 WGLT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTD--NGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp -EEE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EE--TTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-
T ss_pred eEEE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEE--CCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCC
Confidence 4455 467777777 77899999987433 333332221 11122356677776 55 66666666777888888887
Q ss_pred cccccccceeecccccC---CCcceeeecccceeEEEEeeCCC-EEEEEc
Q 010801 301 ALCDHSARILRDAAESH---GSKSFFTEIIASISDIKFANDGQ-HLLSRD 346 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~i~~~~~sp~~~-~l~~~~ 346 (501)
... ..++...-.+ ..... ..-..-.+.+++.|..+ ++++|-
T Consensus 206 ~V~----~~iDls~L~~~~~~~~~~-~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 206 KVV----GWIDLSGLRPEVGRDKSR-QPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp BEE----EEEE-HHHHHHHTSTTST---TTS-EEEEEEETTTTEEEEEET
T ss_pred eEE----EEEEhhHhhhcccccccc-cccCCeeEeEeEeCCCCEEEEEeC
Confidence 654 2221100000 00000 00134588999998765 555663
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.79 E-value=21 Score=36.35 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=31.0
Q ss_pred cceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeecc
Q 010801 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~ 368 (501)
..+..+..||+.++|+-=++ |.|.+-+.+. .+.+..+...
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~~ 257 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNCT 257 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCCC
Confidence 56889999999999987654 9999988875 6666666533
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.70 E-value=6.1 Score=37.33 Aligned_cols=119 Identities=10% Similarity=0.197 Sum_probs=74.6
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
++|.+|+|+ +|.+.++.--.|++|.+++....+.......
T Consensus 67 G~I~SIkFS--lDnkilAVQR~~~~v~f~nf~~d~~~l~~~~-------------------------------------- 106 (657)
T KOG2377|consen 67 GEIKSIKFS--LDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ-------------------------------------- 106 (657)
T ss_pred CceeEEEec--cCcceEEEEecCceEEEEecCCCchhhHHHH--------------------------------------
Confidence 889999998 7889999999999999998854332211100
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
+| ......|....|+.+ .-++.-.+..+.+|......+.++. .+.|...|.-.
T Consensus 107 --------------~c-----k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRl-------Vks~~~nvnWy 159 (657)
T KOG2377|consen 107 --------------EC-----KTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRL-------VKSHNLNVNWY 159 (657)
T ss_pred --------------Hh-----ccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhh-------hhhcccCccEE
Confidence 00 222445777888765 4455445556777776644555543 45677788888
Q ss_pred EEecCCCcEEEEEe--CCCeEEEEEccCC
Q 010801 274 EFHPIYCNLLAYSS--SRGFVRLVDMRQS 300 (501)
Q Consensus 274 ~~~p~~~~~l~~~~--~dg~i~~wd~~~~ 300 (501)
.|.++- +.++.++ ..+.+.=+-++++
T Consensus 160 ~yc~et-~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 160 MYCPET-AVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEcccc-ceEeeeccccccccccEEEeec
Confidence 888887 6444333 2344444444443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=6.1 Score=39.90 Aligned_cols=23 Identities=0% Similarity=-0.025 Sum_probs=17.5
Q ss_pred CCCcEEEEEeCCC--eEEEEEccCCc
Q 010801 278 IYCNLLAYSSSRG--FVRLVDMRQSA 301 (501)
Q Consensus 278 ~~~~~l~~~~~dg--~i~~wd~~~~~ 301 (501)
++ ++.++|+.+| .+..||..+.+
T Consensus 512 ~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CC-EEEEEeeecceeehhhcCccccc
Confidence 45 8899999888 67777777653
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.42 E-value=18 Score=35.12 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=25.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCC
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~ 64 (501)
+..+.|+|.|||++|++--..|+|++++..++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 56789999999988776544699999975544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.36 E-value=12 Score=33.05 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=92.6
Q ss_pred eeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE
Q 010801 209 CQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285 (501)
Q Consensus 209 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 285 (501)
.+..+..........+.|..+|.++-+. . ...|+.+|+.+ ++......+... ..--.++...+ ++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~------~FgEGit~~~d--~l~qL 105 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPR------YFGEGITILGD--KLYQL 105 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--------EEEEEEETT--EEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCcc------ccceeEEEECC--EEEEE
Confidence 3444422233344578887778777664 3 45899999994 444443332211 11234444433 56666
Q ss_pred EeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeE
Q 010801 286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 286 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~ 364 (501)
.-.++...+||..+-+.. ..+.- .+.=+.++ .|++.|+..+ ...|+++|..+ .+....
T Consensus 106 TWk~~~~f~yd~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~ 164 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRT 164 (264)
T ss_dssp ESSSSEEEEEETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEE
T ss_pred EecCCeEEEEccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEE
Confidence 677899999999876543 23322 12334555 5677666654 38899999875 666666
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+.......+ +..++.+.|- +|...|-.-....|..-|..+|.
T Consensus 165 i~V~~~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 165 IQVTDNGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EE-EETTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred EEEEECCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 655433221 1112567775 67777766667777778888883
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.29 E-value=22 Score=35.97 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=18.2
Q ss_pred CCcEEEEEeCCCe-----EEEEecCCCCcc
Q 010801 395 DGLHFATGSYSNL-----LRIFSHGVGSAG 419 (501)
Q Consensus 395 ~~~~l~s~~~dg~-----i~iwd~~~~~~~ 419 (501)
++.+.+.||.|+. |..||..+.+..
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 6778888888763 677888776443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.08 E-value=23 Score=35.85 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=20.3
Q ss_pred eeEEEEeecCCCCEEEEeeCC------CeEEEEecccccee
Q 010801 116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVK 150 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d------~~i~lw~~~~~~~~ 150 (501)
-.+++.. ++..+++|+.| .++..||...++..
T Consensus 325 ~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 325 RVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred cccEEEE---CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 3445553 56788888888 34556676666533
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.81 E-value=17 Score=33.89 Aligned_cols=72 Identities=11% Similarity=-0.001 Sum_probs=39.0
Q ss_pred cccceeEEEEeeC-------CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 326 IIASISDIKFAND-------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 326 h~~~i~~~~~sp~-------~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
+...+..+.|... |.++++.- .+.|....+...++ +......-... -..+..+++.|||.
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~-----------~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS-VTEEEEFLGGF-----------GGRPRDVAQGPDGA 318 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE-EEEEEEECTTS-----------SS-EEEEEEETTSE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC-ccceEEccccC-----------CCCceEEEEcCCCe
Confidence 3356777877753 44555553 36777777764222 21111100000 00126899999999
Q ss_pred EEEEEeCCCeEE
Q 010801 398 HFATGSYSNLLR 409 (501)
Q Consensus 398 ~l~s~~~dg~i~ 409 (501)
++++-+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 998888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.46 E-value=7.5 Score=36.79 Aligned_cols=97 Identities=8% Similarity=-0.068 Sum_probs=63.0
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc---eEEEecccCcccceeeccCCccccCccceeeeecccceeecccc-
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS- 463 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~- 463 (501)
.++.||+|.+.||.--.|.+|.+++....... ..+-+.....|-..+|... +- +|.....|..++...
T Consensus 70 ~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s---~e-----~A~i~~~G~e~y~v~p 141 (657)
T KOG2377|consen 70 KSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS---TE-----IAFITDQGIEFYQVLP 141 (657)
T ss_pred eEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC---ee-----EEEEecCCeEEEEEch
Confidence 79999999999999999999999998543222 1222233333555555543 22 566666666666322
Q ss_pred --CCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 464 --GHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 464 --~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
..+.....+...|+-..|+|+.+.+.-++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22333345677888999999988755444
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.35 E-value=18 Score=33.60 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=89.3
Q ss_pred ccceEEEEecC-CCCEEEEEcCCe------EEEEECCCCC---eeee---eeecCCC---CCCCcccceEEEEEecCCCc
Q 010801 218 DFNINSISNNS-DCETFVSADDLR------INLWNLEISD---QCFN---IVDMKPS---NMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 218 ~~~v~~l~~~~-~~~~l~~~~d~~------i~iwd~~~~~---~~~~---~~~~~~~---~~~~~~~~v~~v~~~p~~~~ 281 (501)
-+.+..|.+.+ ++.+++.++++. +..+++.... ..+. .+.++.. .+..-....-++++.+++ .
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-S 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-C
Confidence 35677888885 454555557666 6656555311 1111 1111100 111111134478887777 7
Q ss_pred EEEEEeCC------CeEEEEEccCCcccccccceeeccc-ccCCCc-ceeeecccceeEEEEeeCCCEEEEEc------C
Q 010801 282 LLAYSSSR------GFVRLVDMRQSALCDHSARILRDAA-ESHGSK-SFFTEIIASISDIKFANDGQHLLSRD------Y 347 (501)
Q Consensus 282 ~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~h~~~i~~~~~sp~~~~l~~~~------~ 347 (501)
++++.-.+ ..|..++.. ++.. ..+.... ..+... ..-...+..+-+++++|+|+.|.+.. |
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQD 172 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCC
Confidence 77776667 778888866 4432 1111100 000000 00112356899999999999555431 2
Q ss_pred C--c-------EEEEEeeC--CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-----CCCeEEEE
Q 010801 348 M--N-------LKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIF 411 (501)
Q Consensus 348 ~--~-------i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~iw 411 (501)
+ . ++++.... .+.+...+......+.. ......+..+.+-+++++|+-=- ....++|+
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~ 246 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIY 246 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEEEEccCCCCccceEEEE
Confidence 1 2 55655542 13333433322221100 00112236888889998776322 23455565
Q ss_pred ecC
Q 010801 412 SHG 414 (501)
Q Consensus 412 d~~ 414 (501)
.+.
T Consensus 247 ~v~ 249 (326)
T PF13449_consen 247 RVD 249 (326)
T ss_pred EEE
Confidence 544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.31 E-value=15 Score=32.48 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=92.3
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
+....-..+..-|||...++-....|.-.|-++. .++.+.+. .+.-........|.+.| ++..++.. |.---.
T Consensus 101 g~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~--evt~f~lp---~~~a~~nlet~vfD~~G-~lWFt~q~-G~yGrL 173 (353)
T COG4257 101 GSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTL--EVTRFPLP---LEHADANLETAVFDPWG-NLWFTGQI-GAYGRL 173 (353)
T ss_pred CCCCCCceEEECCCCCeeEecCcceeEEecCccc--ceEEeecc---cccCCCcccceeeCCCc-cEEEeecc-ccceec
Confidence 3344445566778887666542224444444311 22222111 23334567788899999 88887653 111111
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeecccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
|...+. +++|.. + ....-..|+..|||..-++. .++.|-..|... + .-..+........
T Consensus 174 dPa~~~-----i~vfpa-P-----------qG~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~~~~~- 233 (353)
T COG4257 174 DPARNV-----ISVFPA-P-----------QGGGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPNALKA- 233 (353)
T ss_pred CcccCc-----eeeecc-C-----------CCCCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCCcccc-
Confidence 111111 123322 1 02356788899999876664 235666666543 2 2222222211000
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
+...+.-+|.|+.-++-...+.+.-+|-.+.......+.+.+.
T Consensus 234 -----------gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~a 276 (353)
T COG4257 234 -----------GSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKA 276 (353)
T ss_pred -----------cccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCC
Confidence 0045667788888888888888888888776555455544443
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.87 E-value=7.7 Score=37.40 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=54.2
Q ss_pred CcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccc
Q 010801 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS 462 (501)
Q Consensus 383 ~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~ 462 (501)
..+.|..+..++.|..++-.|.+|.+.++=-+.- -....++..+..|.|..+... .++ .+.+
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rw-G~~s~~eDgk~~v~CRt~~i~--~~~------ftss--------- 163 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRW-GKNSEFEDGKSTVNCRTTPVA--ERF------FTSS--------- 163 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEchhhc-CccceecCCCceEEEEeeccc--cee------eccC---------
Confidence 3346678889999999999999997765432111 112344445555666655542 211 1110
Q ss_pred cCCcccccccCCCeEEEEEccCC---CE-EEEeeCCeEEEEe
Q 010801 463 SGHHELSYNLSSKLLHLAWHPTT---NL-IACANGNSLFFHY 500 (501)
Q Consensus 463 ~~~~~~~~~~~~~i~~~~~sp~~---~~-la~~~~~~~~i~~ 500 (501)
..-.+...+|||+. .. ++-.+++.+++|+
T Consensus 164 ---------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 164 ---------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred ---------CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 11256789999986 34 4455577788886
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.78 E-value=6.4 Score=42.38 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=54.7
Q ss_pred cccceEEEEecCCCCEEEEEcCCeEEEEECCCC-----CeeeeeeecC----------CCCCC-CcccceEEEEEecCCC
Q 010801 217 HDFNINSISNNSDCETFVSADDLRINLWNLEIS-----DQCFNIVDMK----------PSNMD-DLTEVITSAEFHPIYC 280 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~----------~~~~~-~~~~~v~~v~~~p~~~ 280 (501)
....|.++....+|+.+.+|.||.|+-.-.... +++.++ .+. ..++. .+..+|..++....-
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Ki-clt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR- 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKI-CLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR- 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccc-cCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence 356788999889999999996664432211110 111111 000 01233 567799999999886
Q ss_pred cEEEEEeCCCeEEEEEccCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~ 300 (501)
+++.+-++.|.|.+||+...
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ceeeeeccCceEEEEEccCC
Confidence 89999999999999999873
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=24 Score=33.76 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=67.0
Q ss_pred CcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+..+.+.+++..++++.+|.+..-+-. ++..................+.++.|.+++ ..+ .++..|.+...
T Consensus 278 ~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~--G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~-~~~-a~G~~G~v~~s 353 (398)
T PLN00033 278 ASARRIQNMGWRADGGLWLLTRGGGLYVSKGT--GLTEEDFDFEEADIKSRGFGILDVGYRSKK-EAW-AAGGSGILLRS 353 (398)
T ss_pred CCccceeeeeEcCCCCEEEEeCCceEEEecCC--CCcccccceeecccCCCCcceEEEEEcCCC-cEE-EEECCCcEEEe
Confidence 33456788999999999988877775543222 221100000000111122458889999886 554 45667766554
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
. ..++ .|+. .... .+-...+..+.|.++++.+++|.+|.|.-|
T Consensus 354 ~-D~G~-------tW~~-~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 354 T-DGGK-------SWKR-DKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred C-CCCc-------ceeE-cccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 3 3332 2221 0000 011246789999988999999988877654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=26 Score=33.53 Aligned_cols=155 Identities=9% Similarity=0.042 Sum_probs=81.9
Q ss_pred eEEEEecCCCCEEEEEcCCeEE-EEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 221 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
...+..++++.+++.+..|.+. -||-. ......+ -......+.++.+.+++ .+++++ ..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~------~~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH------NRASARRIQNMGWRADG-GLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe------cCCCccceeeeeEcCCC-CEEEEe-CCceEEE-ecCC
Confidence 4455667888888888555433 34432 1111111 11224567899999988 766654 5665443 3223
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccC
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
+.... ...+..-.. ..-...+.++.|.+++..+++|..|.+....- .++.-...........
T Consensus 310 G~~~~--~~~f~~~~~--------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~~------ 371 (398)
T PLN00033 310 GLTEE--DFDFEEADI--------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIAA------ 371 (398)
T ss_pred CCccc--ccceeeccc--------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCCc------
Confidence 21100 001111000 00013588999999999999998887766542 3554444331111100
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEE
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 411 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iw 411 (501)
. .+.+.|.++++.+++| .+|.|.-|
T Consensus 372 ---~---ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 372 ---N---LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ---c---eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 1 1588988777666554 56776554
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=87.73 E-value=11 Score=29.21 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=67.1
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccc----cccceeecccccCCCcceeeecccceeEEEEee-----CCCEE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD----HSARILRDAAESHGSKSFFTEIIASISDIKFAN-----DGQHL 342 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-----~~~~l 342 (501)
.-.|.... ..|+.++.-|.|.|++........ ..++.+.. ...|++++-.+ +...|
T Consensus 3 iGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--------------n~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 3 IGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--------------NQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred EEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC--------------CCceEEEEEEecCCCCCcCEE
Confidence 34566666 678888899999999876543211 11222222 45677776554 34678
Q ss_pred EEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE---cCCCcEEEEEeCCCeEEEEecCCC
Q 010801 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 343 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+.|+...+..||+.. ...+..-..+++. .++.+ .....-|+..+.+..|.-||.+..
T Consensus 68 liGt~t~llaYDV~~-N~d~Fyke~~DGv----------------n~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 68 LIGTQTSLLAYDVEN-NSDLFYKEVPDGV----------------NAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred EEeccceEEEEEccc-CchhhhhhCccce----------------eEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 889889999999985 4444333333332 34443 222233444555577888876533
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=87.46 E-value=10 Score=36.27 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=32.0
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeee
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 255 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (501)
......+.+++.+|++++.++. .-|.|.++|+. ....+++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrm 344 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRM 344 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhh
Confidence 4555678899999999888888 78999999999 5555554
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.075 Score=49.80 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=81.6
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-C
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-Y 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~ 347 (501)
.-...|.|.+ .-++.++.+..+..||-.... ..+. . .++....++|.-++..++.. . .
T Consensus 37 pi~~~w~~e~-~nlavaca~tiv~~YD~agq~-------~le~-n-----------~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 37 PIIHRWRPEG-HNLAVACANTIVIYYDKAGQV-------ILEL-N-----------PTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred cceeeEecCC-CceehhhhhhHHHhhhhhcce-------eccc-C-----------CchhHhhhhhccccchhhhhhhcC
Confidence 3456788888 558888888899999865532 1221 0 12456778888888766643 3 4
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.+++||+.++....-.+.+.... .-+.|++....++.|...|.+.|++..+.+.. .....|.
T Consensus 97 ~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~Gkh~ 159 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMGKHQ 159 (615)
T ss_pred CCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccchhhh-hhhcccc
Confidence 999999997522211122221111 13789999999999999999999998766332 1222244
Q ss_pred Ccccceeecc
Q 010801 428 NENRKPILQA 437 (501)
Q Consensus 428 ~~v~~~~~~~ 437 (501)
..+.+.++.+
T Consensus 160 RRgtq~av~l 169 (615)
T KOG2247|consen 160 RRGTQIAVTL 169 (615)
T ss_pred cceeEEEecc
Confidence 4444444444
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=87.05 E-value=23 Score=32.15 Aligned_cols=154 Identities=13% Similarity=0.133 Sum_probs=85.3
Q ss_pred eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC----cE-EEEEeCCCeEEEEEccCCcccccccceeeccc
Q 010801 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NL-LAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (501)
Q Consensus 240 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~----~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 314 (501)
.|.+||+. ..+.++.+.+...... ....+..+.+....+ .+ .++=+..+.|.++|+.+++.. ++... .
T Consensus 35 KLv~~Dl~-t~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~-~ 107 (287)
T PF03022_consen 35 KLVAFDLK-TNQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHN-S 107 (287)
T ss_dssp EEEEEETT-TTCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETC-G
T ss_pred EEEEEECC-CCcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecC-C
Confidence 68889999 4557777666544444 456778888876321 23 333334568999999998653 22222 2
Q ss_pred ccCCCc-cee------eecccceeEEEEee---CCCEEEEEcCCcEEEEEeeCC----CC---------ceeEeeccccc
Q 010801 315 ESHGSK-SFF------TEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMD----ST---------PVATFKIHEHL 371 (501)
Q Consensus 315 ~~~~~~-~~~------~~h~~~i~~~~~sp---~~~~l~~~~~~~i~lwd~~~~----~~---------~~~~~~~~~~~ 371 (501)
..+.+. ..+ -.....+..++.+| ++++|.-..-..-++|.+.+. .. .++.+ +....
T Consensus 108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~ 186 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGS 186 (287)
T ss_dssp CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---
T ss_pred cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCC
Confidence 222211 100 11223477788876 677777654344455555430 00 01111 11110
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
. ...++.+++|.++++--..+.|..|+...
T Consensus 187 ~--------------s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 Q--------------SDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp S--------------ECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred C--------------CceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 0 04789999999999999999999999876
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=86.77 E-value=37 Score=34.10 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=22.2
Q ss_pred CCEEEEeeCCCeEEEEeccccceeeeec
Q 010801 127 GSMFILSTNDKTIKLWKVRDQKVKKIKE 154 (501)
Q Consensus 127 ~~~l~s~s~d~~i~lw~~~~~~~~~~~~ 154 (501)
+..++.++.|+.+.-.|..+|+......
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 3467778889999999999998876553
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=85.55 E-value=5.4 Score=33.06 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=26.0
Q ss_pred ceEEEEEecCC-----CcEEEEEeCCCeEEEEEccCC
Q 010801 269 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 269 ~v~~v~~~p~~-----~~~l~~~~~dg~i~~wd~~~~ 300 (501)
.+..++|+|.| .-+|++.+.++.|.+|.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78999999965 237899999999999986643
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=85.43 E-value=29 Score=31.70 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010801 228 SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (501)
Q Consensus 228 ~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 307 (501)
.++..++++..|.| |.....++..+.+ .......+..+.-+++| .+++++..-....-||--.
T Consensus 113 ~~~~~~l~~~~G~i--y~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~-------- 175 (302)
T PF14870_consen 113 GDGSAELAGDRGAI--YRTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ-------- 175 (302)
T ss_dssp ETTEEEEEETT--E--EEESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------
T ss_pred CCCcEEEEcCCCcE--EEeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------
Confidence 34444444544443 3333345444432 23344678888889998 8888776555556676543
Q ss_pred ceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
..+..|... -...|.+|.|.|++.+.+.+..+.|++=+.. ....++..+...+.. .-+.+
T Consensus 176 ~~w~~~~r~---------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~---~~~~~w~~~~~~~~~--------~~~~~ 235 (302)
T PF14870_consen 176 TTWQPHNRN---------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDP---DDGETWSEPIIPIKT--------NGYGI 235 (302)
T ss_dssp SS-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---TEEEEE---B-TTSS----------S-E
T ss_pred ccceEEccC---------ccceehhceecCCCCEEEEeCCcEEEEccCC---CCccccccccCCccc--------Cceee
Confidence 223332111 1357999999999988777766888887621 122233221111100 01122
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
..++|.+++...++|+. |.+ +...+.|
T Consensus 236 ld~a~~~~~~~wa~gg~-G~l-~~S~DgG 262 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGS-GTL-LVSTDGG 262 (302)
T ss_dssp EEEEESSSS-EEEEEST-T-E-EEESSTT
T ss_pred EEEEecCCCCEEEEeCC-ccE-EEeCCCC
Confidence 68999999887776655 444 3455555
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.07 E-value=2.5 Score=43.36 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=46.9
Q ss_pred eeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
|..+-|-++.-++..+.+ +.|++....+ .....+.+|...+.....+...-. .--..||||+.++....||.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~----~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVL----KLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchh----hheeeCCCCcEEEEeecCCcc
Confidence 333334445666666754 8888887753 223445556654422211111111 113489999999999999999
Q ss_pred EEEecC
Q 010801 409 RIFSHG 414 (501)
Q Consensus 409 ~iwd~~ 414 (501)
+.|.+-
T Consensus 260 ~f~Qiy 265 (1283)
T KOG1916|consen 260 GFYQIY 265 (1283)
T ss_pred ceeeee
Confidence 998763
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=84.63 E-value=4 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=23.8
Q ss_pred eCCCEEEEEc--CCcEEEEEeeCCCCceeEeeccccc
Q 010801 337 NDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 337 p~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
|++++|.++. ++.|.++|..+ .+.+..+.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence 5777777653 49999999975 7777777654333
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.53 E-value=48 Score=33.42 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=15.6
Q ss_pred CCcEEEEEeCC-----CeEEEEecCCC
Q 010801 395 DGLHFATGSYS-----NLLRIFSHGVG 416 (501)
Q Consensus 395 ~~~~l~s~~~d-----g~i~iwd~~~~ 416 (501)
++++++.|+.+ ..|.+||..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 67777777764 46788887765
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=84.45 E-value=11 Score=31.16 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=24.5
Q ss_pred eeeEEEEcCCC------cEEEEEeCCCeEEEEecCC
Q 010801 386 DKFECSVSGDG------LHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 386 ~~~~~~~s~~~------~~l~s~~~dg~i~iwd~~~ 415 (501)
.+..++|||.| .+|++-+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 34789999953 4788999999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.98 E-value=0.18 Score=47.35 Aligned_cols=99 Identities=9% Similarity=0.067 Sum_probs=65.3
Q ss_pred cceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCC-CcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....++|..++..++. + ..+.+.+||+++.. ..+. .+. .|... -+.|++.. ..++.+...|.+.++
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqL------E~gg~~s~s--ll~wsKg~-~el~ig~~~gn~viy 144 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQL------ESGGTSSKS--LLAWSKGT-PELVIGNNAGNIVIY 144 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHH------hccCcchHH--HHhhccCC-ccccccccccceEEE
Confidence 34456778777777665 5 88999999998432 1111 111 22222 26788887 888888899999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+..+.+... ... .|...+..+++.+.+..+..
T Consensus 145 nhgtsR~ii----v~G-------------kh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 145 NHGTSRRII----VMG-------------KHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred eccchhhhh----hhc-------------ccccceeEEEecccceeeec
Confidence 988765321 111 15567889999887765554
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=37 Score=31.69 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=61.5
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
...+.++.+.|++ .++++ +..|.+..- .+.+. +.|..... .-...+.++.+.++++.++++.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s-~~~gg------~tW~~~~~---------~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYST-WEPGQ------TAWTPHQR---------NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEE-cCCCC------CeEEEeeC---------CCcccceeeeEcCCCCEEEEec
Confidence 4568889999987 65554 455654431 11111 12222100 0135789999999999888887
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.|.+++=..+ .+..-.....+... .-+.+..+.+.+++..+++| .+|.|. ...+.+
T Consensus 234 ~G~~~~~s~d-~G~sW~~~~~~~~~-----------~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G 289 (334)
T PRK13684 234 GGQIRFNDPD-DLESWSKPIIPEIT-----------NGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG 289 (334)
T ss_pred CCEEEEccCC-CCCccccccCCccc-----------cccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC
Confidence 6766532222 23322222111000 00011578899888765544 566554 344444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=83.78 E-value=60 Score=33.93 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=25.1
Q ss_pred cceEEEEEccCCCEEEEEe-----cCCcEEEEEecCCc
Q 010801 33 DIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGK 65 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~-----~dg~i~iw~~~~~~ 65 (501)
-.+..+.+||||++||.+. +..+|++.|+.+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 4577889999999998753 33468888888775
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=83.73 E-value=4.1 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=14.8
Q ss_pred CCeEEEEEccCCCEEEEee
Q 010801 474 SKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 474 ~~i~~~~~sp~~~~la~~~ 492 (501)
..-...+|||||+.|+.++
T Consensus 9 ~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEE
T ss_pred ccccCEEEecCCCEEEEEe
Confidence 3556889999999999877
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.46 E-value=37 Score=32.98 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=80.6
Q ss_pred EeeCCCEEEE-EcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC--------cEEEEEeC
Q 010801 335 FANDGQHLLS-RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--------LHFATGSY 404 (501)
Q Consensus 335 ~sp~~~~l~~-~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--------~~l~s~~~ 404 (501)
...|..+|.. |.. ..++-.|+.. ++.+.++..+...+ +.|.|+. +.|+.-|.
T Consensus 475 h~~dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddvv-----------------Vqy~p~~kf~qmt~eqtlvGlS~ 536 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDVV-----------------VQYNPYFKFQQMTDEQTLVGLSD 536 (776)
T ss_pred ecCCcceEEecCCCcccceeeeccc-ceeeeEeecCCcce-----------------eecCCchhHHhcCccceEEeecc
Confidence 3345556554 333 7888889986 99999999888753 6666643 34554444
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccC---CccccCccceeeeecccce-eec-cccCC-cccccccCCCeEE
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA---PRARRSSLSNLTRGLYRQA-HEN-SSSGH-HELSYNLSSKLLH 478 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~l~~~~~~~~-~iw-~~~~~-~~~~~~~~~~i~~ 478 (501)
.+..+| |..-..... .....+.-...-.|+.. .+| + +|.++..|- +++ ..+.. ...+.++...|..
T Consensus 537 ~svFrI-DPR~~gNKi-~v~esKdY~tKn~Fss~~tTesG-y-----Ia~as~kGDirLyDRig~rAKtalP~lG~aIk~ 608 (776)
T COG5167 537 YSVFRI-DPRARGNKI-KVVESKDYKTKNKFSSGMTTESG-Y-----IAAASRKGDIRLYDRIGKRAKTALPGLGDAIKH 608 (776)
T ss_pred cceEEe-cccccCCce-eeeeehhccccccccccccccCc-e-----EEEecCCCceeeehhhcchhhhcCcccccceee
Confidence 443333 433221111 11111111112222211 122 2 788888888 898 34432 2335577889999
Q ss_pred EEEccCCCEEEEeeCCeEEE
Q 010801 479 LAWHPTTNLIACANGNSLFF 498 (501)
Q Consensus 479 ~~~sp~~~~la~~~~~~~~i 498 (501)
+..+.+|++|.+.|.+.+.+
T Consensus 609 idvta~Gk~ilaTCk~yllL 628 (776)
T COG5167 609 IDVTANGKHILATCKNYLLL 628 (776)
T ss_pred eEeecCCcEEEEeecceEEE
Confidence 99999999999888776544
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=55 Score=32.98 Aligned_cols=22 Identities=5% Similarity=-0.078 Sum_probs=14.2
Q ss_pred CCCcEEEEEeCC--------CeEEEEEccCC
Q 010801 278 IYCNLLAYSSSR--------GFVRLVDMRQS 300 (501)
Q Consensus 278 ~~~~~l~~~~~d--------g~i~~wd~~~~ 300 (501)
++ .+++.|+.+ ..+.+||..++
T Consensus 437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CC-EEEEECCccCCCCCcccceEEEecCCCC
Confidence 44 677777643 23788888765
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.97 E-value=4 Score=38.45 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=86.2
Q ss_pred CCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeee-eeeecCCCCCCC-cccceE-EEEEecCCCcEEEEEeCCCe
Q 010801 215 HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF-NIVDMKPSNMDD-LTEVIT-SAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~-~~~~v~-~v~~~p~~~~~l~~~~~dg~ 291 (501)
..-...|..+-..|||+.+..-...++.++++.+..-.. +..+.. ++ ....|+ .+..-.-| .-|++++.||.
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~ 291 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLLVVHEDGL 291 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEEEEcCCCc
Confidence 344556777888999999988755889999887322111 111000 11 001111 11112233 66888899999
Q ss_pred EEEE-EccCCcc-cccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc
Q 010801 292 VRLV-DMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 292 i~~w-d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~ 368 (501)
|.-| |.+.+.. ...+++.++. ....+..+.-..+.+-+++-. .|++.++.... .+++-.-..-
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l-------------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~ 357 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKL-------------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAY 357 (733)
T ss_pred eeeeeeeecCCCCcceeeecccc-------------CcccceeeccccccceEEEEcCCCceeeeeccc-Ccceehhhhh
Confidence 8877 5554321 1122222222 012222222112223333333 36777666543 3332211111
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+.. .-+++||++.+|++-. .|.|+++.+++.
T Consensus 358 ~~~----------------~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 358 QAP----------------QLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred cCc----------------ceeeeCcccchheeec-CCceEEEEecCC
Confidence 111 3589999999988654 478999999876
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=81.38 E-value=23 Score=27.54 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=50.1
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 36 ~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
..-.|.....-|+.++.-|.|.|++....... ..+ .-..++.+.+...
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~------------------------------~~~--~~~~i~~LNin~~ 49 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQR------------------------------TGR--QDSDISFLNINQE 49 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccc------------------------------ccc--ccCceeEEECCCc
Confidence 44567777778999999999999997754321 000 0012233444477
Q ss_pred eeEEEEee---cCCCCEEEEeeCCCeEEEEeccccc
Q 010801 116 INRVRWCA---APNGSMFILSTNDKTIKLWKVRDQK 148 (501)
Q Consensus 116 V~~v~~~~---~~~~~~l~s~s~d~~i~lw~~~~~~ 148 (501)
|++|+--+ ..+...|+.|+. ..+..||+....
T Consensus 50 italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~ 84 (136)
T PF14781_consen 50 ITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS 84 (136)
T ss_pred eEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence 88886543 234456666664 579999998765
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=81.26 E-value=5.7 Score=22.97 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=19.9
Q ss_pred cccceEEEEEccCCCEEEEEec-C--CcEEEE
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDR-G--GRVILF 59 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~-d--g~i~iw 59 (501)
....-....|||||++|+..+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999999999887663 3 555554
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 501 | ||||
| 3dw8_B | 447 | Structure Of A Protein Phosphatase 2a Holoenzyme Wi | 1e-103 |
| >pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.8 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.74 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.74 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.71 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.7 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.69 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.67 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.66 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.64 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.63 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.63 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.59 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.55 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.52 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.52 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.5 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.5 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.49 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.47 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.45 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.42 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.42 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.39 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.38 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.38 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.36 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.35 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.33 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.32 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.31 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.31 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.3 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.3 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.28 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.28 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.27 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.26 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.25 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.17 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.09 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.07 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.07 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.06 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.04 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.96 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.91 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.88 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.85 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.84 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.82 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.82 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.79 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.75 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.71 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.69 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.68 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.66 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.65 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.62 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.6 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.58 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.53 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.5 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.5 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.5 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.49 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.49 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.49 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.46 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.43 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.42 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.42 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.41 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.39 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.38 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.36 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.3 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.29 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.27 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.21 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.19 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.16 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.12 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.1 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.09 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.09 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.06 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.03 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.02 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.02 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.01 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.99 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.9 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.86 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.85 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.81 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.79 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.79 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.74 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.73 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.68 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.62 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.58 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.57 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.56 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.55 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.55 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.53 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.49 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.49 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.41 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.39 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.39 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.38 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.31 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.29 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.28 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.2 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.17 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.93 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.91 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.8 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.69 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.56 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.55 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.39 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.36 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.19 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.17 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.06 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.04 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.96 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.95 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.61 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.59 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.3 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.26 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.47 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.25 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.14 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.1 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.89 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.72 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.77 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 91.93 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 91.51 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.61 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 90.31 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 88.09 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 88.06 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 87.48 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 86.35 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 86.35 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 84.92 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 83.27 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 81.73 |
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-49 Score=382.36 Aligned_cols=435 Identities=45% Similarity=0.812 Sum_probs=320.8
Q ss_pred ccchhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCC
Q 010801 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (501)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (501)
.+..|++.|.|++. .++++|.+.|++++|+|+|++||+|+.||.|+||++.+++.. ......
T Consensus 8 ~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~----------------~~~~~~ 69 (447)
T 3dw8_B 8 NDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI----------------QSHSRG 69 (447)
T ss_dssp CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCCCC
T ss_pred cceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCC----------------Cccccc
Confidence 55689999999973 556889999999999999999999999999999999977531 112234
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCC--CEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~--~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (501)
+++....+++|.++|+|++++.+++.|++++|+ |++ .+|++++.|++|++||+.++...... ....
T Consensus 70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~--------- 137 (447)
T 3dw8_B 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--PQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLK--------- 137 (447)
T ss_dssp CEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC--CCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC---------
T ss_pred ceeEecccccccccccccccccccCceEEEEEc--CCCCcceEEEeCCCCeEEEEecccccCCcce-eccc---------
Confidence 667788999999999999999999999999998 555 79999999999999999876643221 0000
Q ss_pred ccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECC
Q 010801 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 247 (501)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~ 247 (501)
...+............ ...+-.........+.+.+..+|...|.+++|+|++++|++|.|+.|++||++
T Consensus 138 ~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~ 206 (447)
T 3dw8_B 138 EEDGRYRDPTTVTTLR-----------VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLE 206 (447)
T ss_dssp --------CCCCCSCC-----------CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETT
T ss_pred CccccccCcccccceE-----------eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECC
Confidence 0001000000000000 00001111112234555665789999999999999999999999999999999
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
..+..+..+..++..+.+|...|.+++|+|+++++|++++.||.|++||+++++........+.. ...+.....+.+|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 285 (447)
T 3dw8_B 207 ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFSEII 285 (447)
T ss_dssp EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC-C-----CCHHHHHT
T ss_pred CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc-CCCccccccccccC
Confidence 66666766666666788999999999999997689999999999999999988754433456665 22233334455666
Q ss_pred cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
..|.+++|+|+|++|++++++.|++||+++.++++..+.+|......++..+..++++++..++|+|++++|++|+.||.
T Consensus 286 ~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 286 SSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp TCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred ceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 79999999999999999877999999998657888999999877666666677777776678999999999999999999
Q ss_pred EEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCE
Q 010801 408 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~ 487 (501)
|++||+.+++. ..+.++..+.......+. .+ +..++.... ........++...|.+++|||++++
T Consensus 366 v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~ 430 (447)
T 3dw8_B 366 FRMFDRNTKRD--ITLEASRENNKPRTVLKP--RK------VCASGKRKK-----DEISVDSLDFNKKILHTAWHPKENI 430 (447)
T ss_dssp EEEEETTTCCE--EEEECCSTTCCTTCBCCC--CC------EECSSCCCT-----TCEEGGGCCTTSCCCEEEECSSSSE
T ss_pred EEEEEcCCCcc--eeeeecccccccccccCC--cc------ccccCCccc-----ccccccccccCCceeEEEECCCCCE
Confidence 99999998744 477777776654444331 11 222222211 1122234467789999999999999
Q ss_pred EEEeeCCeEEEEeC
Q 010801 488 IACANGNSLFFHYA 501 (501)
Q Consensus 488 la~~~~~~~~i~~~ 501 (501)
||+++.+++|+|++
T Consensus 431 la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 431 IAVATTNNLYIFQD 444 (447)
T ss_dssp EEEECSSCEEEEEC
T ss_pred EEEEecceeeeecc
Confidence 99999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=380.19 Aligned_cols=399 Identities=14% Similarity=0.138 Sum_probs=292.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.. ....+.+|.
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-------------------------~~~~~~~~~------- 103 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS------- 103 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS-------
T ss_pred cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-------------------------eeEeecccC-------
Confidence 369999999999999999999999999999998765431 445678898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCC----CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d----~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|.+++|+ |++++|++++.+ +.|++||.. +..... .-+...+....+.++...
T Consensus 104 -----~~v~~v~fs--~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l-------------~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 104 -----GPVKDISWD--SESKRIAAVGEGRERFGHVFLFDTG--TSNGNL-------------TGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp -----SCEEEEEEC--TTSCEEEEEECCSSCSEEEEETTTC--CBCBCC-------------CCCSSCEEEEEECSSSSC
T ss_pred -----CceEEEEEC--CCCCEEEEEECCCCceeEEEEeeCC--CCccee-------------cCCCCCceEEEECCCCCe
Confidence 889999998 899999998865 478888843 222211 112344556666666653
Q ss_pred -cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 -GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 -~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
++++.. ++.+++|+... .++...+ .+|...|.+++|+|++++|++| .|++|++||+.. ++....+......
T Consensus 162 ~l~s~s~--D~~v~lwd~~~---~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 162 RIISGSD--DNTVAIFEGPP---FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLK 234 (611)
T ss_dssp EEEEEET--TSCEEEEETTT---BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSS
T ss_pred EEEEEeC--CCeEEEEECCC---CeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeecccccc
Confidence 666554 88999999775 4555665 8999999999999999999999 999999999984 4444432111111
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc----------------------------
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA---------------------------- 314 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---------------------------- 314 (501)
..+|...|.+++|+|++ ++|++++.|++|++||+++++... .+..+.
T Consensus 235 ~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309 (611)
T ss_dssp SCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE----EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred ccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceee----eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence 23799999999999999 999999999999999998875431 111100
Q ss_pred --ccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEe-eccccccccc---------------
Q 010801 315 --ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPKL--------------- 375 (501)
Q Consensus 315 --~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~--------------- 375 (501)
........+.+|...|.+++|+|+|++|++++ |+.|++||+.+ ++....+ .+|...+..+
T Consensus 310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~ 388 (611)
T 1nr0_A 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 388 (611)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred eCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence 00001224568999999999999999999986 59999999875 4433222 1121110000
Q ss_pred ----cccC------------------------CCC-----------------------CcceeeEEEEcCCCcEEEEEeC
Q 010801 376 ----CDLY------------------------NND-----------------------SIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 376 ----~~~~------------------------~~~-----------------------~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
++.. .+. ....+.+++|+|||++|++|+.
T Consensus 389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence 0000 000 0112468999999999999999
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC---Cccc-cc-ccCCCeEE
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG---HHEL-SY-NLSSKLLH 478 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~---~~~~-~~-~~~~~i~~ 478 (501)
|++|++||+.++........+|...|.+++|+| ++++ |++++.|+. ++|+... .... .. .|...|++
T Consensus 469 D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fsp--dg~~-----las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~ 541 (611)
T 1nr0_A 469 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN--NGAF-----LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC 541 (611)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEEECT--TSSE-----EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE
T ss_pred CCeEEEEEccCCceeeeeccCCCCceEEEEECC--CCCE-----EEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeE
Confidence 999999999876332223378999999999999 7888 999999999 9995542 2221 22 38999999
Q ss_pred EEEccCCCEEEEeeCC-eEEEEeC
Q 010801 479 LAWHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 479 ~~~sp~~~~la~~~~~-~~~i~~~ 501 (501)
++|+|||++||+++.| .+++|+.
T Consensus 542 v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 542 VSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEET
T ss_pred EEECCCCCEEEEEECCCcEEEEEC
Confidence 9999999999999955 5999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=359.29 Aligned_cols=354 Identities=19% Similarity=0.242 Sum_probs=292.5
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++|+|+|++|++++.|+.|++|+.... ....+.+|.
T Consensus 219 ~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~~~-------- 262 (577)
T 2ymu_A 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS-------- 262 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC----------------------------EEEEECCCS--------
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------------------------EEEEEecCC--------
Confidence 58899999999999999999999999999995432 446788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|++++|+ |+++.+++++.|+.|++|+..... ...... +...+....+.++...++.+.
T Consensus 263 ----~~v~~v~~~--~d~~~l~~~~~d~~i~~w~~~~~~-~~~~~~-------------h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 263 ----SSVNGVAFR--PDGQTIASASDDKTVKLWNRNGQL-LQTLTG-------------HSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSCEEEEETTSCE-EEEECC-------------CSSCEEEEEECTTSSEEEEEE
T ss_pred ----CCEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCcE-EEEEec-------------CCCCeEEEEECCCCCEEEEEe
Confidence 889999997 899999999999999999976443 322211 123445556667777776665
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
. ++.+++|+.... .+..+ .+|...|.+++|+|+++.++++ .|+.|++||.. . +.+.. +.+|..
T Consensus 323 ~--d~~i~~w~~~~~----~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~-------~~~~~~ 386 (577)
T 2ymu_A 323 D--DKTVKLWNRNGQ----HLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQT-------LTGHSS 386 (577)
T ss_dssp T--TSCEEEEETTSC----EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEE-------EECCSS
T ss_pred C--CCeEEEEeCCCC----eeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEE-------ecCCCC
Confidence 3 889999998743 33444 7899999999999999999999 99999999976 3 33332 567899
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.|+.|++||... +.. ..+ .+|...|.+++|+||+++|++++ |
T Consensus 387 ~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~~~----~~~-------------~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 387 SVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QLL----QTL-------------TGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp CEEEEEECTTS-SCEEEEETTSEEEEECTTC-CEE----EEE-------------ECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-CEE----EEe-------------cCCCCCeEEEEECCCCCEEEEEcCC
Confidence 99999999999 9999999999999999543 221 222 44678999999999999999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||.. ++.+..+.+|...+ ++++|+|++++|++++.|+.|++||.. + .....+.+|.
T Consensus 448 ~~v~~w~~~--~~~~~~~~~~~~~v---------------~~~~~spd~~~las~~~d~~i~iw~~~-~-~~~~~~~~h~ 508 (577)
T 2ymu_A 448 KTVKLWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHS 508 (577)
T ss_dssp SEEEEEETT--SCEEEEEECCSSCE---------------EEEEECTTSCEEEEEETTSEEEEEETT-S-CEEEEEECCS
T ss_pred CEEEEEECC--CCEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEEEEEcCC-C-CEEEEEeCCC
Confidence 999999974 77888888888765 799999999999999999999999964 4 4558899999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eecccc-CCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
..|.+++|+| ++++ |++++.|+. ++|+.. +.+....+|...|++++|+||+++|++++.|+ +++|+
T Consensus 509 ~~v~~l~~s~--dg~~-----l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 509 SSVRGVAFSP--DGQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECT--TSSC-----EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEEcC--CCCE-----EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999998 7888 999999999 999544 44556678999999999999999999998654 99996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-44 Score=360.09 Aligned_cols=390 Identities=18% Similarity=0.169 Sum_probs=292.7
Q ss_pred ccccccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
...|...|++++|+|++. .||+|+.|++|++||..++ +....+.+|.
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~---------------------------~~~~~l~~H~----- 190 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---------------------------KFKSTFGEHT----- 190 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---------------------------EEEEEECCCS-----
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC---------------------------eEeeeecccc-----
Confidence 346999999999999987 5999999999999997644 3457789999
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|++++|+ |++++|++++.|++|++||+.+++......... .....+.+.+..+.++++...++
T Consensus 191 -------~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~------~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 191 -------KFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS------LKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp -------SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCTT------SSSCSSSSCEEEEEECTTSSEEE
T ss_pred -------CceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeecccc------ccccccCCCEEEEEECCCCCEEE
Confidence 899999998 799999999999999999999887665442100 00012345677777888888887
Q ss_pred cceeccCcceEEEeccCceeee----------------------------------------eeEeecCCcccceEEEEe
Q 010801 187 HLEWTENMATKIANVGNSVHAR----------------------------------------CQKVYPHAHDFNINSISN 226 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~----------------------------------------~~~~~~~~~~~~v~~l~~ 226 (501)
++.. ++.+++||+....... +...+ .+|...|++++|
T Consensus 256 s~s~--D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~-~gh~~~v~~l~~ 332 (611)
T 1nr0_A 256 SASA--DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR-YGHNKAITALSS 332 (611)
T ss_dssp EEET--TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEE
T ss_pred EEeC--CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE-cCCCCCEEEEEE
Confidence 7764 8899999987543211 12223 689999999999
Q ss_pred cCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010801 227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 305 (501)
Q Consensus 227 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 305 (501)
+|++++|+++ .|++|++||+.+ +..... ...+|...|.+++|++++ .+++++.|+.+++|++..+.....
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~------~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDIST-GISNRV------FPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-CCEEEC------SSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSCTT
T ss_pred eCCCCEEEEEeCCCcEEEEECCC-Cceeee------cccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCcccccc
Confidence 9999999999 999999999994 444332 136789999999999765 688999999999999876532210
Q ss_pred ccc--eeecc----cccCCC-----------------cceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCc
Q 010801 306 SAR--ILRDA----AESHGS-----------------KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (501)
Q Consensus 306 ~~~--~~~~~----~~~~~~-----------------~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~ 361 (501)
... .+..+ ...+.. ......|...+.+++|+|||++|++|+ |+.|++||+.. +..
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~-~~~ 482 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-ASV 482 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-TEE
T ss_pred ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC-Cce
Confidence 000 00000 000000 000113567789999999999999986 59999999974 332
Q ss_pred --eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEE--EecccCcccceeecc
Q 010801 362 --VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQA 437 (501)
Q Consensus 362 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~ 437 (501)
+.. .+|...+ ++++|+|||++|++++.|++|++|++.++...... +..|...|.+++|+|
T Consensus 483 ~~~~~-~~h~~~v---------------~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp 546 (611)
T 1nr0_A 483 SEVKT-IVHPAEI---------------TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 546 (611)
T ss_dssp EEEEE-EECSSCE---------------EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred eeeec-cCCCCce---------------EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC
Confidence 223 4566554 79999999999999999999999999873233232 345999999999999
Q ss_pred CCccccCccceeeeecccce-eeccccC---Cc-cccccc-CCCeEEEEEccCCCEEEEeeC-CeEEEEeC
Q 010801 438 APRARRSSLSNLTRGLYRQA-HENSSSG---HH-ELSYNL-SSKLLHLAWHPTTNLIACANG-NSLFFHYA 501 (501)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~-~iw~~~~---~~-~~~~~~-~~~i~~~~~sp~~~~la~~~~-~~~~i~~~ 501 (501)
++++ |++|+.|+. ++|+... .. ....+| ...|++++|+|++. |++++. +.+.+|+.
T Consensus 547 --dg~~-----lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 547 --DNVR-----LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp --TSSE-----EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred --CCCE-----EEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 7888 999999999 9996543 22 345578 79999999999999 888875 55999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=324.55 Aligned_cols=286 Identities=18% Similarity=0.184 Sum_probs=241.5
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||+|+|||+.+++ ....+++|.
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---------------------------~~~~~~~~~-------- 55 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---------------------------EVRSIQVTE-------- 55 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------eeEEeeccC--------
Confidence 689999999999999999999999999999998764 346788888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +++++|++|+.|++|++||+.+++.....
T Consensus 56 ----~~v~~~~~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~~------------------------------------ 93 (304)
T 2ynn_A 56 ----TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVDF------------------------------------ 93 (304)
T ss_dssp ----SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CcEEEEEEe--CCCCEEEEECCCCEEEEEECCCCcEEEEE------------------------------------
Confidence 889999998 78899999999999999999987754332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|.+++|+|++++|++| .|++|++||++........ +.+|..
T Consensus 94 -------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-------~~~h~~ 141 (304)
T 2ynn_A 94 -------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEH 141 (304)
T ss_dssp -------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-------ECCCCS
T ss_pred -------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-------hcccCC
Confidence 6899999999999999999999 9999999999855444443 678999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee--CCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~~~~ 346 (501)
.|.+++|+|+++.+|++|+.|+.|++||+++.... ..+. .+|...+..+.|+| ++++|++++
T Consensus 142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~~------------~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLT------------TGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEEE------------CCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----ceec------------cCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 99999999953389999999999999999876432 1111 12456789999987 678999886
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|+.|++||+++ ++++..+.+|...+ ..++|+|++++|++|+.||+|+|||+.+++ ....+..
T Consensus 206 ~D~~i~iWd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~ 268 (304)
T 2ynn_A 206 DDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNV 268 (304)
T ss_dssp TTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECC
T ss_pred CCCeEEEEeCCC-CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeeccC
Confidence 59999999986 88899999998765 789999999999999999999999999884 5588999
Q ss_pred ccCcccceeeccCCccccCccceeeeecccceeeccc
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS 462 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~ 462 (501)
|...++++++.|.....+ +++|+.++..+|..
T Consensus 269 ~~~~~~~~~~~~~~~~~~-----~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 269 GLERSWCIATHPTGRKNY-----IASGFDNGFTVLSL 300 (304)
T ss_dssp SSSSEEEEEECTTCGGGC-----EEEEETTEEEEEEC
T ss_pred CCccEEEEEECCCCCceE-----EEEecCCceEEEEe
Confidence 999999999998643345 78887777666643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=325.26 Aligned_cols=284 Identities=15% Similarity=0.226 Sum_probs=242.7
Q ss_pred cccccceEEEEEccC----CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
..|.+.|++++|+|+ +++||+|+.|++|+||++.+++ ......+.+|.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~-------------------------~~~~~~l~gh~--- 80 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER-------------------------LDLQWSLEGHQ--- 80 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCS---
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC-------------------------eeeeeeeccCC---
Confidence 369999999999985 6799999999999999998653 22445688999
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..|.+++|+ +++.++++++.|++|++||+.+++.....
T Consensus 81 ---------~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~~~~~~~~~~------------------------------- 118 (321)
T 3ow8_A 81 ---------LGVVSVDIS--HTLPIAASSSLDAHIRLWDLENGKQIKSI------------------------------- 118 (321)
T ss_dssp ---------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------------------
T ss_pred ---------CCEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCEEEEE-------------------------------
Confidence 899999998 78899999999999999999987754432
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..|...+.+++|+|++++|++| .|+.|++|+++....... +
T Consensus 119 ------------------------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--------~ 160 (321)
T 3ow8_A 119 ------------------------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--------L 160 (321)
T ss_dssp ------------------------------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--------E
T ss_pred ------------------------------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--------e
Confidence 4566788899999999999999 999999999995544332 4
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
..|...|.+++|+|++ ++|++++.||.|++||+++++.. ..+ .+|...|.+++|+|++++|+
T Consensus 161 ~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~~-------------~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HTL-------------EGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp ECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEE-------------CCCSSCCCEEEECTTSCEEE
T ss_pred cCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEE-------------cccCCceeEEEEcCCCCEEE
Confidence 5677889999999999 99999999999999999987543 333 34678999999999999999
Q ss_pred EEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEE
Q 010801 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 344 ~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
+++ |+.|++||++. .+....+.+|...+ .+++|+|++++|++++.|++|+|||+.+++ ...+
T Consensus 223 s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~ 285 (321)
T 3ow8_A 223 TASDDGYIKIYDVQH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRT-CVHT 285 (321)
T ss_dssp EECTTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred EEcCCCeEEEEECCC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCCE-EEEE
Confidence 986 59999999986 78888898888765 799999999999999999999999999884 4588
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
+.+|...|.+++|++ ++.. |++++.|+. ++|+.
T Consensus 286 ~~~h~~~v~~v~~s~--~g~~-----l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 286 FFDHQDQVWGVKYNG--NGSK-----IVSVGDDQEIHIYDC 319 (321)
T ss_dssp ECCCSSCEEEEEECT--TSSE-----EEEEETTCCEEEEEC
T ss_pred EcCCCCcEEEEEECC--CCCE-----EEEEeCCCeEEEEeC
Confidence 999999999999998 6777 999999999 99953
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=338.72 Aligned_cols=281 Identities=18% Similarity=0.246 Sum_probs=246.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.++|++++|+|++++||+|+.||+|+|||+.+++.. ..+++|.
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------------~~l~~h~------- 150 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------------RTLKGHT------- 150 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------------EEECCCS-------
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------------EEEeccC-------
Confidence 469999999999999999999999999999999987653 6789999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|.+++|+ +++++|++|+.|++|++||+.++++....
T Consensus 151 -----~~V~~v~~~--~~~~~l~sgs~D~~i~iwd~~~~~~~~~~----------------------------------- 188 (410)
T 1vyh_C 151 -----DSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRTM----------------------------------- 188 (410)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSCCCEEETTSSCEEECC-----------------------------------
T ss_pred -----CcEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCceeEEE-----------------------------------
Confidence 899999998 78999999999999999999876644322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...|.+++|+|++++|++| .|++|++||+++ +.++.. +.+|.
T Consensus 189 --------------------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-~~~~~~-------~~~h~ 234 (410)
T 1vyh_C 189 --------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKT-------FTGHR 234 (410)
T ss_dssp --------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEE-------EECCS
T ss_pred --------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEE-------EeCCC
Confidence 6899999999999999999999 999999999994 445543 57899
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---------
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------- 338 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--------- 338 (501)
..|.++.++|++ .+|++++.|+.|++||+++++.. ..+ .+|...|.+++|+|+
T Consensus 235 ~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~~~-------------~~h~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 235 EWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AEL-------------REHRHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECCSCGGGGGGGC
T ss_pred ccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcee----eEe-------------cCCCceEEEEEEcCcccccchhhh
Confidence 999999999999 99999999999999999887533 222 346788999999996
Q ss_pred -----------CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 339 -----------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 339 -----------~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
|.+|++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++++|++|+.||
T Consensus 297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp CSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTT
T ss_pred ccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCC
Confidence 66899886 59999999986 88889999998765 7899999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.|++||+.+++. ...+.+|...|.+++|+| ++.+ |++|+.|+. ++|+
T Consensus 361 ~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~--~~~~-----l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 361 TLRVWDYKNKRC-MKTLNAHEHFVTSLDFHK--TAPY-----VVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEEECCTTSCC-CEEEECCSSCEEEEEECS--SSSC-----EEEEETTSEEEEEC
T ss_pred eEEEEECCCCce-EEEEcCCCCcEEEEEEcC--CCCE-----EEEEeCCCcEEEEe
Confidence 999999988754 488999999999999998 6667 999999999 9994
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=346.85 Aligned_cols=354 Identities=18% Similarity=0.237 Sum_probs=291.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++|+|++++|++|+.||.|++||.... ....+.+|.
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~----------------------------~~~~~~~~~-------- 221 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS-------- 221 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC----------------------------EEEEEECCS--------
T ss_pred CCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCc----------------------------EEEEEecCC--------
Confidence 47889999999999999999999999999995432 446788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++.+|++++.|+.|++|+..... ...... +...+..+.+.++...++.+.
T Consensus 222 ----~~v~~~~~s--~dg~~l~~~~~d~~i~~w~~~~~~-~~~~~~-------------~~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 222 ----SSVRGVAFS--PDGQTIASASDDKTVKLWNRNGQL-LQTLTG-------------HSSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp ----SCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCE-EEEECC-------------CSSCEEEEEECTTSSEEEEEE
T ss_pred ----CCEEEEEEC--CCCCEEEEEeCCCEEEEEeCCCCE-EEEEec-------------CCCCEEEEEEcCCCCEEEEEe
Confidence 889999998 889999999999999999975433 322211 123444555666777776665
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
. ++.+++|+... +..+.+ .+|...|.+++|+|+++.++++ .|+.|++||+. ...... +.+|..
T Consensus 282 ~--d~~i~~w~~~~----~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~--------~~~~~~ 345 (577)
T 2ymu_A 282 D--DKTVKLWNRNG----QLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQT--------LTGHSS 345 (577)
T ss_dssp T--TSCEEEEETTS----CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE--------ECCCSS
T ss_pred C--CCEEEEEeCCC----cEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEE--------EeCCCC
Confidence 3 78999999763 344444 7899999999999999999999 99999999987 443332 567889
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.||.|++||... +.. ..+ .+|...|.+++|+|++++|++++ |
T Consensus 346 ~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~-~~~----~~~-------------~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 346 SVWGVAFSPDG-QTIASASDDKTVKLWNRNG-QLL----QTL-------------TGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp CEEEEEECTTS-SEEEEEETTSEEEEEETTC-CEE----EEE-------------ECCSSCEEEEEECTTSSCEEEEETT
T ss_pred CEEEEEECCCC-CEEEEEeCCCEEEEEcCCC-CEE----EEe-------------cCCCCCeEEEEECCCCCEEEEEeCC
Confidence 99999999999 9999999999999999643 221 222 34678999999999999999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||.. ++.+..+.+|...+ ++++|+||+++|++++.|+.|++||.. + .....+.+|.
T Consensus 407 ~~v~~~~~~--~~~~~~~~~~~~~v---------------~~~~~s~d~~~l~~~~~d~~v~~w~~~-~-~~~~~~~~~~ 467 (577)
T 2ymu_A 407 KTVKLWNRN--GQLLQTLTGHSSSV---------------WGVAFSPDDQTIASASDDKTVKLWNRN-G-QLLQTLTGHS 467 (577)
T ss_dssp SEEEEECTT--CCEEEEEECCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETT-S-CEEEEEECCS
T ss_pred CEEEEEeCC--CCEEEEecCCCCCe---------------EEEEECCCCCEEEEEcCCCEEEEEECC-C-CEEEEEcCCC
Confidence 999999963 78888888888765 789999999999999999999999975 3 4558899999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eecccc-CCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
..+.+++|+| ++++ |++++.|+. ++|+.. +......+|...|++++|+|++++||+++.|+ +++|+
T Consensus 468 ~~v~~~~~sp--d~~~-----las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 468 SSVRGVAFSP--DGQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp SCEEEEEECT--TSCE-----EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEEcC--CCCE-----EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999999999 7888 999999999 999544 44555678999999999999999999999665 99996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=323.07 Aligned_cols=279 Identities=13% Similarity=0.126 Sum_probs=206.9
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|...|.+++|+|||++|++++ |+++++||....... .....+..........|+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~----------------~~~~~~~~~~~~~~~~~~------- 82 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK----------------DPCAAPNEGFCSAGVQTE------- 82 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES----------------SGGGTTCGGGCSEEEEES-------
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec----------------cccccCCcceeeeeeccC-------
Confidence 35678899999999999999887 778888874321100 000000000011112233
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ ++ ..|++|+.||+|+|||+.+++......
T Consensus 83 -----~~v~~~~~s--~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~---------------------------------- 120 (344)
T 4gqb_B 83 -----AGVADLTWV--GE-RGILVASDSGAVELWELDENETLIVSK---------------------------------- 120 (344)
T ss_dssp -----SCEEEEEEE--TT-TEEEEEETTSEEEEEEECTTSSCEEEE----------------------------------
T ss_pred -----CCEEEEEEe--CC-CeEEEEECCCEEEEEeccCCCceeEee----------------------------------
Confidence 789999998 55 578899999999999999876443220
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
....+|...|++++|+|+|++|++| .|++|++||++ .++.+.. +.+|.
T Consensus 121 -----------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~-------~~~h~ 169 (344)
T 4gqb_B 121 -----------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSS-------YRAHA 169 (344)
T ss_dssp -----------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred -----------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EcCcC
Confidence 0115899999999999999999999 99999999999 4555554 68899
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~ 346 (501)
..|.+++|+|++..+|++++.|+.|++||+++++.. ..+.. ..|...+.+++|+|+ +++|++|+
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEE
T ss_pred CceEEEEecCCCCCceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEec
Confidence 999999999998568999999999999999987643 22221 123457899999995 56788875
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
|+.|++||+++ ++++..+.+|...+ ++++|+|++ ++|++|+.|++|+|||+.+++ + ..+.
T Consensus 235 ~dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~-~~~~ 296 (344)
T 4gqb_B 235 ENGTVSLVDTKS-TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-L-FRSQ 296 (344)
T ss_dssp TTSEEEEEESCC---CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCCE-E-EEEC
T ss_pred cCCcEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCCc-E-EEEc
Confidence 59999999986 88999999998876 799999997 589999999999999998773 2 3455
Q ss_pred cccCcccceeecc
Q 010801 425 AGKNENRKPILQA 437 (501)
Q Consensus 425 ~~~~~v~~~~~~~ 437 (501)
+|.+.|.+++|+|
T Consensus 297 ~H~~~V~~v~~sp 309 (344)
T 4gqb_B 297 AHRDFVRDATWSP 309 (344)
T ss_dssp CCSSCEEEEEECS
T ss_pred CCCCCEEEEEEeC
Confidence 5555555555554
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=326.58 Aligned_cols=273 Identities=14% Similarity=0.182 Sum_probs=204.4
Q ss_pred cccccceEEEEEccCCCEEEEEec------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (501)
..|...|++|+|||||++||+|+. |+.|++|+..++... ........+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-----------------------~~~~~~~~~~~- 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-----------------------ESLCTAGVQTE- 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-----------------------GGGCSEEEECS-
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-----------------------eeEecccCCCC-
Confidence 358999999999999999999997 778999987766431 12223445677
Q ss_pred chhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
..|.+++|+ |++ .+++++.||+|+|||+.+++.......
T Consensus 95 -----------~~V~~~~~s--~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~--------------------------- 133 (357)
T 4g56_B 95 -----------AGVTDVAWV--SEK-GILVASDSGAVELWEILEKESLLVNKF--------------------------- 133 (357)
T ss_dssp -----------SCEEEEEEE--TTT-EEEEEETTSCEEEC--------CCCCE---------------------------
T ss_pred -----------CCEEEEEEc--CCC-CEEEEECCCEEEEeeccccceeEEEee---------------------------
Confidence 889999998 565 566788999999999988764322100
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
...+|...|++++|+|++++|++| .|+.|++||++ .++.+..
T Consensus 134 ------------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~------ 176 (357)
T 4g56_B 134 ------------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKS------ 176 (357)
T ss_dssp ------------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEE------
T ss_pred ------------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE------
Confidence 015899999999999999999999 99999999999 4555543
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-C
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-Q 340 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~ 340 (501)
+.+|...|++++|+|++..++++++.||.|++||+++++.. ..+.. ..|...+.+++|+|++ .
T Consensus 177 -~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~-----------~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 177 -YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF-----------CASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp -ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC-----------TTCCSCEEEEEECTTSTT
T ss_pred -EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeee-----------ccccccccchhhhhcccc
Confidence 67899999999999998568999999999999999987543 11111 1245679999999974 6
Q ss_pred EEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCCCc
Q 010801 341 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+|++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++ ++|++|+.||+|+|||+++++.
T Consensus 241 ~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp EEEEEESSSCEEEEESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred eEEEeecccceeEEECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 788875 59999999986 88888998888765 799999987 6899999999999999987732
Q ss_pred ceEEEecccCcccceeecc
Q 010801 419 GGITVEAGKNENRKPILQA 437 (501)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~~ 437 (501)
. ...+|.+.|++++|+|
T Consensus 305 ~--~~~~H~~~V~~vafsP 321 (357)
T 4g56_B 305 F--RDLSHRDFVTGVAWSP 321 (357)
T ss_dssp E--EECCCSSCEEEEEECS
T ss_pred e--EECCCCCCEEEEEEeC
Confidence 2 2234544444444444
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=315.90 Aligned_cols=285 Identities=13% Similarity=0.192 Sum_probs=236.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|++++||+|+.||+|+|||..+++. ...+..|.
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------------~~~~~~~~-------- 97 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------------VHAIPLRS-------- 97 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECSS--------
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------------ceEeecCC--------
Confidence 5999999999999999999999999999999886643 36677888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++++|++++.|+.|++|++.++....
T Consensus 98 ----~~v~~~~~s--~~~~~l~s~~~d~~v~iw~~~~~~~~~-------------------------------------- 133 (340)
T 1got_B 98 ----SWVMTCAYA--PSGNYVACGGLDNICSIYNLKTREGNV-------------------------------------- 133 (340)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTCEEEEEETTTCSBSC--------------------------------------
T ss_pred ----ccEEEEEEC--CCCCEEEEEeCCCeEEEEECccCCCcc--------------------------------------
Confidence 889999998 789999999999999999987653110
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.....+ .+|...|.++.|++++. ++++ .|++|++||++ .++.... +.+|..
T Consensus 134 ------------------~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~-~~~~~~~-------~~~h~~ 185 (340)
T 1got_B 134 ------------------RVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE-TGQQTTT-------FTGHTG 185 (340)
T ss_dssp ------------------EEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT-TTEEEEE-------ECCCSS
T ss_pred ------------------eeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECC-CCcEEEE-------EcCCCC
Confidence 111122 68999999999998875 6666 99999999999 4444443 678999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.|+.|++||++++... ..+ .+|...|.+++|+|++++|++++ |
T Consensus 186 ~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~----~~~-------------~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 186 DVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR----QTF-------------TGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeE----EEE-------------cCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 99999999998 99999999999999999887533 333 34678999999999999999986 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||++. .+.+..+..+... ..+++++|+|++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 248 ~~v~iwd~~~-~~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~~~~h~ 312 (340)
T 1got_B 248 ATCRLFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHD 312 (340)
T ss_dssp SCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECCS
T ss_pred CcEEEEECCC-CcEEEEEccCCcc-------------cceEEEEECCCCCEEEEECCCCeEEEEEcccCc-EeeEeecCC
Confidence 9999999985 6666555422211 112789999999999999999999999998874 458899999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.+|.+++++| ++.+ |++|+.|+. ++|+
T Consensus 313 ~~v~~~~~s~--dg~~-----l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 NRVSCLGVTD--DGMA-----VATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECT--TSSC-----EEEEETTSCEEEEC
T ss_pred CcEEEEEEcC--CCCE-----EEEEcCCccEEecC
Confidence 9999999998 7777 999999999 9983
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=309.54 Aligned_cols=291 Identities=14% Similarity=0.228 Sum_probs=233.0
Q ss_pred ccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .......+++|.
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~------- 65 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS------- 65 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS-------
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc-------
Confidence 699999999999965 89999999999999998754321 233567889999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ +++.+|++++.|++|++||+.+++.....
T Consensus 66 -----~~v~~~~~s--~dg~~l~s~s~D~~v~~wd~~~~~~~~~~----------------------------------- 103 (319)
T 3frx_A 66 -----HIVQDCTLT--ADGAYALSASWDKTLRLWDVATGETYQRF----------------------------------- 103 (319)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----ccEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCCeeEEE-----------------------------------
Confidence 899999998 89999999999999999999987744332
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...|.+++|+|++.+|++| .|++|++||++ .. .+.. +.+|.
T Consensus 104 --------------------------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~-~~~~-------~~~h~ 148 (319)
T 3frx_A 104 --------------------------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ-CLAT-------LLGHN 148 (319)
T ss_dssp --------------------------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SC-EEEE-------ECCCS
T ss_pred --------------------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC-eEEE-------EeccC
Confidence 6899999999999999999999 99999999998 33 3332 57899
Q ss_pred cceEEEEEecCC-----CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 268 EVITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 268 ~~v~~v~~~p~~-----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
..|.+++|.|.. ...|++++.|+.|++||+++.+.. .. +.+|...|.+++|+|+|++|
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~-------------~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE----AD-------------FIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE----EE-------------ECCCCSCEEEEEECTTSSEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh----ee-------------ecCCCCcEEEEEEcCCCCEE
Confidence 999999999853 148999999999999999876432 22 24578899999999999999
Q ss_pred EEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 010801 343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 343 ~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (501)
++++ |+.|++||+.+ ++.+..+..+.. + .+++|+|++.+|++++.+ .+++|+++.+. ...
T Consensus 212 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~~-v---------------~~~~~sp~~~~la~~~~~-~i~v~~~~~~~-~~~ 272 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAA-KKAMYTLSAQDE-V---------------FSLAFSPNRYWLAAATAT-GIKVFSLDPQY-LVD 272 (319)
T ss_dssp EEEETTCEEEEEETTT-TEEEEEEECCSC-E---------------EEEEECSSSSEEEEEETT-EEEEEEETTEE-EEE
T ss_pred EEEeCCCeEEEEECCC-CcEEEEecCCCc-E---------------EEEEEcCCCCEEEEEcCC-CcEEEEeCcCe-eee
Confidence 9986 69999999986 777777775543 2 799999999999988765 59999998652 212
Q ss_pred EEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 422 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 422 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.+..+. ......+...+.+++|+|||++|++|+.|+ ++||+
T Consensus 273 ~~~~~~--------------------------------------~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 273 DLRPEF--------------------------------------AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp EECCCC--------------------------------------TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccCccc--------------------------------------cccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 221110 001123445788999999999999999655 99997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=311.89 Aligned_cols=290 Identities=16% Similarity=0.171 Sum_probs=241.5
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeec--CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA--PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~--~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
....+.+++|. +.|++++|++. +++.+|++|+.|++|++|++.+++....
T Consensus 22 g~~~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~---------------- 73 (321)
T 3ow8_A 22 GILFKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ---------------- 73 (321)
T ss_dssp EEEEEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------------
T ss_pred hheeeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------------
Confidence 33456678999 99999999853 2567999999999999999876553221
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
..+ .+|...|.+++|++++.+++++ .|++|++||+.
T Consensus 74 ------------------------------------------~~l-~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 74 ------------------------------------------WSL-EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp ------------------------------------------EEE-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred ------------------------------------------eee-ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 112 6899999999999999999999 99999999999
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
.++.+.. +..+...+.+++|+|++ ++|++++.||.|++||+++++.. ..+. .|.
T Consensus 111 -~~~~~~~-------~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----~~~~-------------~~~ 164 (321)
T 3ow8_A 111 -NGKQIKS-------IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----YSLD-------------TRG 164 (321)
T ss_dssp -TTEEEEE-------EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----EEEE-------------CSS
T ss_pred -CCCEEEE-------EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----EEec-------------CCC
Confidence 4444443 45677788999999999 99999999999999999887533 2222 345
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..+.+++|+|++++|++++ |+.|++||+++ ++.+..+.+|...+ .+++|+|++++|++|+.||
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPI---------------RSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCC---------------CEEEECTTSCEEEEECTTS
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCce---------------eEEEEcCCCCEEEEEcCCC
Confidence 7899999999999999986 59999999986 88888998888765 7899999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEcc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp 483 (501)
.|+|||+.++. ....+.+|...|.+++|+| ++.+ |++++.|+. ++|+.. .......+|...|.+++|+|
T Consensus 229 ~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp--~~~~-----l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 229 YIKIYDVQHAN-LAGTLSGHASWVLNVAFCP--DDTH-----FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp CEEEEETTTCC-EEEEECCCSSCEEEEEECT--TSSE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred eEEEEECCCcc-eeEEEcCCCCceEEEEECC--CCCE-----EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence 99999999874 4588999999999999999 6777 999999999 999554 34455678999999999999
Q ss_pred CCCEEEEeeCCe-EEEEeC
Q 010801 484 TTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 484 ~~~~la~~~~~~-~~i~~~ 501 (501)
++++|++++.|+ +++|++
T Consensus 301 ~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 301 NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TSSEEEEEETTCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeC
Confidence 999999998654 999974
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=312.81 Aligned_cols=298 Identities=18% Similarity=0.319 Sum_probs=226.7
Q ss_pred cccc-ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~-~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|.+ .|++++|+|+|++||+|+.|++|+|||+.+++.. .......+|.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~------- 61 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ------- 61 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS-------
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC-------
Confidence 4766 8999999999999999999999999999876321 0112346888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|.+++|+ |++++|++++.|++|++|++..+...
T Consensus 62 -----~~v~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~~~-------------------------------------- 96 (345)
T 3fm0_A 62 -----RTVRKVAWS--PCGNYLASASFDATTCIWKKNQDDFE-------------------------------------- 96 (345)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSCEEEEEECCC-EE--------------------------------------
T ss_pred -----CcEEEEEEC--CCCCEEEEEECCCcEEEEEccCCCeE--------------------------------------
Confidence 889999998 79999999999999999998765422
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe--eeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~ 265 (501)
+...+ .+|...|.+++|+|++++|++| .|++|++||++.... +.. .+.+
T Consensus 97 --------------------~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------~~~~ 148 (345)
T 3fm0_A 97 --------------------CVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS-------VLNS 148 (345)
T ss_dssp --------------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE-------EECC
T ss_pred --------------------EEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE-------EecC
Confidence 22222 6899999999999999999999 999999999984432 222 2578
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|.+++|+|++ ++|++++.|+.|++||.++++.. ... .+.+|...|.+++|+|+|++|+++
T Consensus 149 h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~----~~~-----------~~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV----CCA-----------TLEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp CCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEE----EEE-----------EECCCSSCEEEEEECTTSSEEEEE
T ss_pred cCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEE----EEE-----------EecCCCCceEEEEECCCCCEEEEE
Confidence 99999999999999 99999999999999999876421 111 134578899999999999999998
Q ss_pred c-CCcEEEEEeeCCCCc--------------eeEeec-cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 346 D-YMNLKLWDIRMDSTP--------------VATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
+ |++|++||....+.. +..+.+ |... +++++|+|++..|++++.|+.|+
T Consensus 213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~~~~~~~l~s~~~d~~i~ 277 (345)
T 3fm0_A 213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT---------------IYDIAWCQLTGALATACGDDAIR 277 (345)
T ss_dssp ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC---------------EEEEEECTTTCCEEEEETTSCEE
T ss_pred eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc---------------EEEEEEecCCCEEEEEeCCCeEE
Confidence 6 599999998542211 112222 2222 27999999999999999999999
Q ss_pred EEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCC-CEE
Q 010801 410 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT-NLI 488 (501)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~-~~l 488 (501)
+|+...+.... .+ .+. + ......+|...|++++|+|++ .+|
T Consensus 278 vw~~~~~~~~~-------~~----~~~------~---------------------~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 278 VFQEDPNSDPQ-------QP----TFS------L---------------------TAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEECTTSCTT-------SC----CEE------E---------------------EEEETTSSSSCEEEEEECSSSTTEE
T ss_pred EEEeCCCCCcc-------ee----eEE------E---------------------EeeecccccCcEeEeEEeCCCceEE
Confidence 99987652210 00 000 0 001123567789999999987 488
Q ss_pred EEeeCC-eEEEEe
Q 010801 489 ACANGN-SLFFHY 500 (501)
Q Consensus 489 a~~~~~-~~~i~~ 500 (501)
|+++.| .+++|+
T Consensus 320 aS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 320 ASCSDDGEVAFWK 332 (345)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEE
Confidence 888855 488886
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=322.43 Aligned_cols=283 Identities=15% Similarity=0.240 Sum_probs=244.4
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
...+.+|. +.|++++|+ |++.+|++|+.|++|++||+.+++.....
T Consensus 101 ~~~l~gh~------------~~V~~~~~~--p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-------------------- 146 (410)
T 1vyh_C 101 KYALSGHR------------SPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTL-------------------- 146 (410)
T ss_dssp SCEEECCS------------SCEEEEEEC--SSSSEEEEEESSSCEEEEETTTCCCCEEE--------------------
T ss_pred eEeecccC------------CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEE--------------------
Confidence 45677898 999999998 78999999999999999999987644332
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.+|...|.+++|+|++++|++| .|++|++||+. ..++
T Consensus 147 -----------------------------------------~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~ 184 (410)
T 1vyh_C 147 -----------------------------------------KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFEC 184 (410)
T ss_dssp -----------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCE
T ss_pred -----------------------------------------eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCce
Confidence 6899999999999999999999 99999999998 4445
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
+. .+.+|...|.+++|+|++ ++|++++.|+.|++||++++... ..+ .+|...|..
T Consensus 185 ~~-------~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~----~~~-------------~~h~~~v~~ 239 (410)
T 1vyh_C 185 IR-------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KTF-------------TGHREWVRM 239 (410)
T ss_dssp EE-------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEE-------------ECCSSCEEE
T ss_pred eE-------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEE-------------eCCCccEEE
Confidence 44 378899999999999999 99999999999999999987543 333 346789999
Q ss_pred EEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC----------------
Q 010801 333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---------------- 395 (501)
Q Consensus 333 ~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------------- 395 (501)
+.++|++++|++++ |+.|++||+++ ++....+.+|...+ .+++|+|+
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVV---------------ECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECCSCGGGGGGGCCSCC---
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCceE---------------EEEEEcCcccccchhhhccccccc
Confidence 99999999999986 69999999986 78888888888765 78999996
Q ss_pred ----CcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCccc
Q 010801 396 ----GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHEL 468 (501)
Q Consensus 396 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~ 468 (501)
+.+|++|+.|+.|++||+.++. ....+.+|...|.+++|+| ++++ |++|+.|+. ++|+.. +....
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~--~g~~-----l~s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHS--GGKF-----ILSCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECS--SSSC-----EEEEETTTEEEEECCTTSCCCEE
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcC--CCCE-----EEEEeCCCeEEEEECCCCceEEE
Confidence 6789999999999999999884 4588899999999999998 7777 999999999 999543 44556
Q ss_pred ccccCCCeEEEEEccCCCEEEEeeCC-eEEEEeC
Q 010801 469 SYNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 469 ~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~~ 501 (501)
...|...|++++|+|++++||+|+.| .+.+|+.
T Consensus 376 ~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 67899999999999999999999955 5999973
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=349.66 Aligned_cols=386 Identities=12% Similarity=0.081 Sum_probs=281.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.||+|+||+..+.+. .. ...|.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~---------------------------~~-~~~~~------- 58 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV---------------------------VI-KLEDR------- 58 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE---------------------------EE-ECSSC-------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE---------------------------EE-EcCCC-------
Confidence 46899999999999999999999999999999775532 12 22365
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ + +++|++++.|++|++||+.+++...... ..+.+..+.+.++..+++.+
T Consensus 59 -----~~V~~l~fs--p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--------------~~~~V~~v~~sp~g~~l~sg 116 (902)
T 2oaj_A 59 -----SAIKEMRFV--K-GIYLVVINAKDTVYVLSLYSQKVLTTVF--------------VPGKITSIDTDASLDWMLIG 116 (902)
T ss_dssp -----CCEEEEEEE--T-TTEEEEEETTCEEEEEETTTCSEEEEEE--------------CSSCEEEEECCTTCSEEEEE
T ss_pred -----CCEEEEEEc--C-CCEEEEEECcCeEEEEECCCCcEEEEEc--------------CCCCEEEEEECCCCCEEEEE
Confidence 789999998 5 7799999999999999999887665442 22456777788888888887
Q ss_pred eeccCcceEEEeccCceeeeeeE-------eecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 189 EWTENMATKIANVGNSVHARCQK-------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~-------~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
.. ++.+++||+.......... ....+|...|.+++|+|+ +..+++| .|+.| +||++ .++....+...
T Consensus 117 s~--dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~ 192 (902)
T 2oaj_A 117 LQ--NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYE 192 (902)
T ss_dssp ET--TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCC
T ss_pred cC--CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecc
Confidence 64 8999999998754321110 122679999999999996 4688888 99999 99999 45555443211
Q ss_pred C-----------CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc----------------------c
Q 010801 260 P-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------S 306 (501)
Q Consensus 260 ~-----------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~----------------------~ 306 (501)
. .....|...|.+++|+|+| ++|++++.||.|++||+++++.... .
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 271 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNA 271 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCC
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCcccc
Confidence 0 0123456789999999999 9999999999999999977543210 0
Q ss_pred --c--------------c-----------------eee-ccc----------------------------c---------
Q 010801 307 --A--------------R-----------------ILR-DAA----------------------------E--------- 315 (501)
Q Consensus 307 --~--------------~-----------------~~~-~~~----------------------------~--------- 315 (501)
+ . .+. .+. .
T Consensus 272 ~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 351 (902)
T 2oaj_A 272 AKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPI 351 (902)
T ss_dssp CEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEEC
T ss_pred CCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEEC
Confidence 0 0 000 000 0
Q ss_pred ---cC------CC-----------cc----------------------------------------------------ee
Q 010801 316 ---SH------GS-----------KS----------------------------------------------------FF 323 (501)
Q Consensus 316 ---~~------~~-----------~~----------------------------------------------------~~ 323 (501)
.+ .. .. .+
T Consensus 352 ~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l 431 (902)
T 2oaj_A 352 PRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLL 431 (902)
T ss_dssp CSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSC
T ss_pred CCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcc
Confidence 00 00 00 00
Q ss_pred eecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCce--eEee---------ccccccccccccCCCCCcceeeEEE
Q 010801 324 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV--ATFK---------IHEHLRPKLCDLYNNDSIFDKFECS 391 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (501)
.+|...+..++|+|++++|++|+ |++|++||+.. +... ..+. +|...+ ++++
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~~~h~~~V---------------~sva 495 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLNKAKELAV---------------DKIS 495 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTTCSSSCCE---------------EEEE
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcCCCCCCce---------------eEEE
Confidence 11222233345578899999986 69999999975 4321 1111 333333 8999
Q ss_pred EcCCCcEEEEEeCCCeEEEEecCCCCc--------------------------------------------ceEEEeccc
Q 010801 392 VSGDGLHFATGSYSNLLRIFSHGVGSA--------------------------------------------GGITVEAGK 427 (501)
Q Consensus 392 ~s~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------------------------~~~~~~~~~ 427 (501)
|+||+++||+|+.||+|+||++.+++. ....+.+|.
T Consensus 496 fspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~ 575 (902)
T 2oaj_A 496 FAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK 575 (902)
T ss_dssp EETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS
T ss_pred ecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC
Confidence 999999999999999999999986621 246788999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eeccccCCcc-------ccc-ccCCCeEEEEEc-----cCC---CEEEE
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE-------LSY-NLSSKLLHLAWH-----PTT---NLIAC 490 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~-------~~~-~~~~~i~~~~~s-----p~~---~~la~ 490 (501)
+.|++++|+| +| + ||+|+.|+. ++|+...... ... +|...|++++|+ ||| .+|++
T Consensus 576 ~~V~svafSp--dG-~-----lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s 647 (902)
T 2oaj_A 576 GKTSAINNSN--IG-F-----VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC 647 (902)
T ss_dssp CSEEEEEECB--TS-E-----EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred CcEEEEEecC--Cc-E-----EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence 9999999998 77 7 999999999 9997654321 232 788999999999 886 89999
Q ss_pred eeCC-eEEEEe
Q 010801 491 ANGN-SLFFHY 500 (501)
Q Consensus 491 ~~~~-~~~i~~ 500 (501)
|+.| .+++|+
T Consensus 648 gs~D~tv~~wd 658 (902)
T 2oaj_A 648 GTDMGEVITYK 658 (902)
T ss_dssp EETTSEEEEEE
T ss_pred EecCCcEEEEE
Confidence 9955 599996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=305.04 Aligned_cols=284 Identities=16% Similarity=0.151 Sum_probs=235.9
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
..+++++|. +.|++++|+ |++++|++++.||+|++||+.++......
T Consensus 5 ~~~~~~~h~------------~~V~~~~fs--p~~~~l~s~~~dg~v~lWd~~~~~~~~~~------------------- 51 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRSI------------------- 51 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------
T ss_pred eEEeecCCC------------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCceeEEe-------------------
Confidence 457789999 899999998 79999999999999999999887644332
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
..|...|.+++|+|++++|++| .|++|++||+++..
T Consensus 52 ------------------------------------------~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~- 88 (304)
T 2ynn_A 52 ------------------------------------------QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE- 88 (304)
T ss_dssp ------------------------------------------ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-
T ss_pred ------------------------------------------eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-
Confidence 5788899999999999999999 99999999999544
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.+.. +.+|...|.+++|+|++ ++|++++.|++|++||++++.... .. +.+|...|.
T Consensus 89 ~~~~-------~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~---~~-------------~~~h~~~v~ 144 (304)
T 2ynn_A 89 KVVD-------FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE---QT-------------FEGHEHFVM 144 (304)
T ss_dssp EEEE-------EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEE---EE-------------ECCCCSCEE
T ss_pred EEEE-------EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchh---hh-------------hcccCCcEE
Confidence 4432 67899999999999999 999999999999999998763221 22 345778999
Q ss_pred EEEEee-CCCEEEEEc-CCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcC--CCcEEEEEeCCC
Q 010801 332 DIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSN 406 (501)
Q Consensus 332 ~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~s~~~dg 406 (501)
+++|+| ++.+|++|+ |+.|++||++. ..+...+. ++...+ ..++|+| ++++|++|+.|+
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETTS
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCCC
Confidence 999999 678899886 69999999975 55544444 333332 5678876 788999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccccccCCCeEEEEEcc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~~~~i~~~~~sp 483 (501)
+|++||+.+++ ...++.+|...+..++|+| ++.+ |++|+.|+. ++|+.. +.......+...+.+++|+|
T Consensus 209 ~i~iWd~~~~~-~~~~~~~h~~~v~~~~~~p--~~~~-----l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 209 TIKIWDYQTKS-CVATLEGHMSNVSFAVFHP--TLPI-----IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECS--SSSE-----EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred eEEEEeCCCCc-cceeeCCCCCCEEEEEECC--CCCE-----EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999884 4588999999999999999 6666 999999999 999544 44455667788999999999
Q ss_pred CCC--EEEEeeCCeEEEEe
Q 010801 484 TTN--LIACANGNSLFFHY 500 (501)
Q Consensus 484 ~~~--~la~~~~~~~~i~~ 500 (501)
++. +||+|+++++.+|.
T Consensus 281 ~~~~~~~asg~~~g~~~~~ 299 (304)
T 2ynn_A 281 TGRKNYIASGFDNGFTVLS 299 (304)
T ss_dssp TCGGGCEEEEETTEEEEEE
T ss_pred CCCceEEEEecCCceEEEE
Confidence 985 69999999999986
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=360.75 Aligned_cols=371 Identities=14% Similarity=0.191 Sum_probs=275.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...+.+|.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~---------------------------~~~~~~h~-------- 657 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK---------------------------LLDIKAHE-------- 657 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS--------
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEeccCC--------
Confidence 5999999999999999999999999999999987753 46788999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC--Cccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 187 (501)
+.|.+++|+ |++++|++++.|++|++||+.+++........ ...+....+.+. ..++++
T Consensus 658 ----~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 658 ----DEVLCCAFS--SDDSYIATCSADKKVKIWDSATGKLVHTYDEH-------------SEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECSSSSCCEEEE
T ss_pred ----CCEEEEEEe--cCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-------------CCcEEEEEEecCCCceEEEE
Confidence 899999998 78999999999999999999998876654322 233444455553 334444
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCC------
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP------ 260 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~------ 260 (501)
+. .++.+++||+... .+...+ .+|...|.+++|+|+++.++++ .|+.|++||+.... ....+....
T Consensus 719 g~--~d~~v~vwd~~~~---~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 719 GS--NDFFLKLWDLNQK---ECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN-ERKSINVKRFFLSSE 791 (1249)
T ss_dssp EE--TTSCEEEEETTSS---SEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE-EEEEEECCCCC----
T ss_pred Ee--CCCeEEEEECCCc---chhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc-ccceecccccccccC
Confidence 44 4889999999863 455555 7899999999999999999999 99999999998432 222211100
Q ss_pred -------------------------------------C-----CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 261 -------------------------------------S-----NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 261 -------------------------------------~-----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
. ...+|...|.+++|+|++ .++++++.||.|++||+.
T Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNID 870 (1249)
T ss_dssp ----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETT
T ss_pred CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcC
Confidence 0 012677889999999998 999999999999999998
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeC--------------------
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRM-------------------- 357 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~-------------------- 357 (501)
++... ..+ .+|...|.+++|+|+|++|++++ |+.|++||+..
T Consensus 871 ~~~~~----~~~-------------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1249)
T 3sfz_A 871 SRLKV----ADC-------------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 933 (1249)
T ss_dssp TTEEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETT
T ss_pred CCcee----eec-------------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCC
Confidence 76432 222 23455666666666666666553 36666665431
Q ss_pred ----------------------------------------------------------CCCceeEeeccccccccccccC
Q 010801 358 ----------------------------------------------------------DSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 358 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
.++....+.+|...+
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v------- 1006 (1249)
T 3sfz_A 934 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV------- 1006 (1249)
T ss_dssp EEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC-------
T ss_pred CcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce-------
Confidence 133333333333322
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC---------------------------------------cce
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS---------------------------------------AGG 420 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------------------------------~~~ 420 (501)
++++|+|++++|++++.||.|++||+.++. ...
T Consensus 1007 --------~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1007 --------RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp --------CCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred --------EEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence 577777777777777777777777665431 223
Q ss_pred EEEecccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEccCCCEEEEeeCCe-E
Q 010801 421 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-L 496 (501)
Q Consensus 421 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~ 496 (501)
..+.+|...+.+++++| ++++ +++++.|+. .+|+. ........+|...|++++|+|++++||+++.|+ +
T Consensus 1079 ~~~~~~~~~v~~~~~s~--d~~~-----l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAISS--DATK-----FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp EEEECCSSCCCCEEECS--SSSS-----CEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred EEEcccCCcEEEEEECC--CCCE-----EEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 56677889999999998 7777 999999999 99954 345566778999999999999999999999665 9
Q ss_pred EEEeC
Q 010801 497 FFHYA 501 (501)
Q Consensus 497 ~i~~~ 501 (501)
++|+.
T Consensus 1152 ~vwd~ 1156 (1249)
T 3sfz_A 1152 RIWNV 1156 (1249)
T ss_dssp CEEES
T ss_pred EEEEC
Confidence 99973
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=311.82 Aligned_cols=288 Identities=14% Similarity=0.186 Sum_probs=236.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++||+|+.||+|+|||..+++. ...+..|.
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~~------- 106 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------EHAVTMPC------- 106 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECSS-------
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------------ceEEecCC-------
Confidence 36999999999999999999999999999999876543 35566777
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++.++++++.|+.+++|++........
T Consensus 107 -----~~v~~~~~s--p~g~~lasg~~d~~i~v~~~~~~~~~~~------------------------------------ 143 (354)
T 2pbi_B 107 -----TWVMACAYA--PSGCAIACGGLDNKCSVYPLTFDKNENM------------------------------------ 143 (354)
T ss_dssp -----SCCCEEEEC--TTSSEEEEESTTSEEEEEECCCCTTCCS------------------------------------
T ss_pred -----CCEEEEEEC--CCCCEEEEeeCCCCEEEEEEeccccccc------------------------------------
Confidence 789999998 8999999999999999999865321100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
......+ .+|...|.+++|+|++..|+++ .|++|++||+++ ++.+.. +.+|.
T Consensus 144 ------------------~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-~~~~~~-------~~~h~ 196 (354)
T 2pbi_B 144 ------------------AAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQS-------FHGHG 196 (354)
T ss_dssp ------------------GGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEE-------EECCS
T ss_pred ------------------cccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CeEEEE-------EcCCC
Confidence 0011111 5789999999999999999999 999999999994 444443 67899
Q ss_pred cceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 268 EVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
..|.+++|+|+ + ++|++|+.||.|++||+++++.. ..+. +|...|.+++|+|++++|+++
T Consensus 197 ~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~----~~~~-------------~h~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 197 ADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCV----QAFE-------------THESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp SCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCEE----EEEC-------------CCSSCEEEEEECTTSSEEEEE
T ss_pred CCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEE----EEec-------------CCCCCeEEEEEeCCCCEEEEE
Confidence 99999999884 5 89999999999999999987543 3333 467899999999999999998
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+ |++|++||++. .+.+..+..+... ..+.+++|+|++++|++|+.|+.|++||+.++.. ...+.
T Consensus 259 s~D~~v~lwd~~~-~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~l~ 323 (354)
T 2pbi_B 259 SDDATCRLYDLRA-DREVAIYSKESII-------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSILF 323 (354)
T ss_dssp ETTSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEEC
T ss_pred eCCCeEEEEECCC-CcEEEEEcCCCcc-------------cceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EEEEE
Confidence 6 59999999985 5555555433221 1226899999999999999999999999988854 47889
Q ss_pred cccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+|...|.+++|+| ++++ |++|+.|+. ++|
T Consensus 324 ~h~~~v~~l~~sp--dg~~-----l~sgs~D~~v~vW 353 (354)
T 2pbi_B 324 GHENRVSTLRVSP--DGTA-----FCSGSWDHTLRVW 353 (354)
T ss_dssp CCSSCEEEEEECT--TSSC-----EEEEETTSEEEEE
T ss_pred CCCCcEEEEEECC--CCCE-----EEEEcCCCCEEec
Confidence 9999999999999 7788 999999999 998
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-40 Score=302.61 Aligned_cols=283 Identities=22% Similarity=0.393 Sum_probs=230.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++ ....+.+|.
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~-------- 65 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHK-------- 65 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS--------
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCC--------
Confidence 689999999999999999999999999999988664 346788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++.....
T Consensus 66 ----~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~------------------------------------ 103 (312)
T 4ery_A 66 ----LGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKTL------------------------------------ 103 (312)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CceEEEEEc--CCCCEEEEECCCCEEEEEECCCCcEEEEE------------------------------------
Confidence 889999998 78999999999999999999887644332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|.+++|+|++++|++| .|+.|++||++. ++.... +..|..
T Consensus 104 -------------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~-------~~~~~~ 150 (312)
T 4ery_A 104 -------------------------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKT-------LPAHSD 150 (312)
T ss_dssp -------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEEE-------ECCCSS
T ss_pred -------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEEE-------ecCCCC
Confidence 5788999999999999999999 999999999994 444443 577889
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.||.|++||+++++.. ..+.. .+...+..++|+|++++|++++ |
T Consensus 151 ~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 151 PVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLID------------DDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEECC------------SSCCCEEEEEECTTSSEEEEEETT
T ss_pred cEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEec------------cCCCceEEEEECCCCCEEEEEcCC
Confidence 99999999999 99999999999999999887543 22211 2346799999999999999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE-cCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
+.|++||+++ ++.+..+.+|...... ....+ .+++.+|++|+.||.|++||+.+++. ...+.+
T Consensus 214 ~~i~iwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~- 277 (312)
T 4ery_A 214 NTLKLWDYSK-GKCLKTYTGHKNEKYC-------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQG- 277 (312)
T ss_dssp TEEEEEETTT-TEEEEEECSSCCSSSC-------------CCEEEECSSSCEEEECCTTSCEEEEETTTCCE-EEEECC-
T ss_pred CeEEEEECCC-CcEEEEEEecCCceEE-------------EEEEEEeCCCcEEEEECCCCEEEEEECCCchh-hhhhhc-
Confidence 9999999986 7888888877654321 12344 46789999999999999999987732 233333
Q ss_pred cCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEee---CCeEEEEe
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFHY 500 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~---~~~~~i~~ 500 (501)
|...|.+++|+|++++|++++ ++.+.+|.
T Consensus 278 ---------------------------------------------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 278 ---------------------------------------------HTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp ---------------------------------------------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred ---------------------------------------------cCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 344677888888888888775 45588886
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=315.89 Aligned_cols=300 Identities=19% Similarity=0.317 Sum_probs=222.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch----
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF---- 104 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~---- 104 (501)
++|.+.|++++|+|||++||+|+ ++.++||++.+++.. ..+.+|....
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~---------------------------~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV---------------------------ARLSDDSAANKDPE 112 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE---------------------------EEECC---------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE---------------------------EEecCccccccccc
Confidence 36999999999999999999987 689999999877542 2232222000
Q ss_pred --hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 105 --DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 105 --~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
...........|.+++|+ |++++|++|+.|++|++||+.+++.....
T Consensus 113 ~~~~~~~~~~~~~v~~v~~s--~dg~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------- 161 (393)
T 1erj_A 113 NLNTSSSPSSDLYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVMIL----------------------------- 161 (393)
T ss_dssp --------CCCCBEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------
T ss_pred cccccccCCCceeEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEE-----------------------------
Confidence 000000111459999998 89999999999999999999887644332
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
.+|...|.+++|+|+++.|++| .|++|++||+++ ++....+
T Consensus 162 --------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~----- 203 (393)
T 1erj_A 162 --------------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTL----- 203 (393)
T ss_dssp --------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEE-----
T ss_pred --------------------------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEE-----
Confidence 6899999999999999999999 999999999994 4444321
Q ss_pred CCCCcccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 262 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
.+...+.+++|+| ++ ++|++++.||.|++||++++... ..+.. ......+|...|.+++|+|+|+
T Consensus 204 ---~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 204 ---SIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp ---ECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSS
T ss_pred ---EcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecc------cccCCCCCCCCEEEEEECCCCC
Confidence 2456799999999 76 99999999999999999887543 22211 0111246788999999999999
Q ss_pred EEEEEc-CCcEEEEEeeCC-----------CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 341 HLLSRD-YMNLKLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+|++++ |+.|++||++.. +.+...+.+|...+ .+++|+|++++|++|+.||.|
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeE
Confidence 999986 699999999742 12344556666544 789999999999999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccC----CccccCccceeeeecccce-eec
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAA----PRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
++||+.+++. ...+.+|...|.++++++. .++.+ |++|+.|+. ++|
T Consensus 335 ~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~-----l~sgs~Dg~i~iW 385 (393)
T 1erj_A 335 LFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNV-----FATGSGDCKARIW 385 (393)
T ss_dssp EEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEE-----EEEEETTSEEEEE
T ss_pred EEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCE-----EEEECCCCcEEEC
Confidence 9999998854 4788889888888888762 12333 555555555 555
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=303.48 Aligned_cols=289 Identities=15% Similarity=0.157 Sum_probs=239.9
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
..+....+++|. +.|++++|+ +++++|++++.||+|++||+.+++.....
T Consensus 44 ~~~~~~~l~gH~------------~~v~~~~~s--~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---------------- 93 (340)
T 1got_B 44 QMRTRRTLRGHL------------AKIYAMHWG--TDSRLLLSASQDGKLIIWDSYTTNKVHAI---------------- 93 (340)
T ss_dssp CCCEEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEE----------------
T ss_pred cchhheeecCCC------------CceEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCcceEe----------------
Confidence 345667899999 999999998 89999999999999999999887644332
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..|...|.+++|+|+++++++| .|+.|++|++..
T Consensus 94 ---------------------------------------------~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 94 ---------------------------------------------PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp ---------------------------------------------ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred ---------------------------------------------ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 5778899999999999999999 999999999985
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
........ ..+.+|...|.++.|++++ .+++++.|+.|++||+++++.. ..+ .+|..
T Consensus 129 ~~~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~----~~~-------------~~h~~ 185 (340)
T 1got_B 129 REGNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT----TTF-------------TGHTG 185 (340)
T ss_dssp CSBSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE----EEE-------------CCCSS
T ss_pred CCCcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE----EEE-------------cCCCC
Confidence 43221110 1257899999999999986 4889999999999999887543 333 34778
Q ss_pred ceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
.|.+++|+|++++|++|+ |+.|++||+++ ++.+..+.+|...+ ++++|+|++++|++|+.||.
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDI---------------NAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSC
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCE---------------EEEEEcCCCCEEEEEcCCCc
Confidence 999999999999999986 69999999986 88888898888765 79999999999999999999
Q ss_pred EEEEecCCCCcceEEEe--cccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEc
Q 010801 408 LRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWH 482 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~s 482 (501)
|++||+.+++.+ ..+. .+...+.+++|+| ++++ |++|+.|+. .+|+. ........+|...|.+++|+
T Consensus 250 v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s 321 (340)
T 1got_B 250 CRLFDLRADQEL-MTYSHDNIICGITSVSFSK--SGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp EEEEETTTTEEE-EEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCcEE-EEEccCCcccceEEEEECC--CCCE-----EEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc
Confidence 999999887443 3333 2334788999998 7788 999999999 99954 34455667899999999999
Q ss_pred cCCCEEEEeeCC-eEEEEe
Q 010801 483 PTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 483 p~~~~la~~~~~-~~~i~~ 500 (501)
|++.+||+|+.| .++||+
T Consensus 322 ~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEcCCccEEecC
Confidence 999999999955 599995
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=299.79 Aligned_cols=300 Identities=17% Similarity=0.238 Sum_probs=228.5
Q ss_pred ccccceEEEEE-----cc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcc
Q 010801 30 QDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (501)
Q Consensus 30 ~h~~~v~~v~~-----s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (501)
.|.+.|++++| ++ ++++||+|+.|++|+|||+.+++.. .........+.+|.
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------------~~~~~~~~~l~~h~-- 76 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------------GYFGIPHKALTGHN-- 76 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------------SBSEEEEEEECCCS--
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------------cccccccchhccCC--
Confidence 69999999999 77 9999999999999999999865421 00123556788999
Q ss_pred hhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..|.+++|+ |++.++++++.|++|++||+.+++.....
T Consensus 77 ----------~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~~~~~~~------------------------------ 114 (343)
T 2xzm_R 77 ----------HFVSDLALS--QENCFAISSSWDKTLRLWDLRTGTTYKRF------------------------------ 114 (343)
T ss_dssp ----------SCEEEEEEC--SSTTEEEEEETTSEEEEEETTSSCEEEEE------------------------------
T ss_pred ----------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCcEEEEE------------------------------
Confidence 889999998 78999999999999999999987644332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.+|...|.+++|+|++++|++| .|++|++||+. ....... ..
T Consensus 115 -------------------------------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~-----~~ 157 (343)
T 2xzm_R 115 -------------------------------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS-----AE 157 (343)
T ss_dssp -------------------------------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC-----CT
T ss_pred -------------------------------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee-----ec
Confidence 6899999999999999999999 99999999998 3332221 12
Q ss_pred CCCcccceEEEEEecCCC---------cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 263 MDDLTEVITSAEFHPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~---------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
...|...|.+++|+|++. .+|++++.||.|++||... ... .. +.+|...|.++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----~~-------------~~~h~~~v~~~ 219 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR----YT-------------FKAHESNVNHL 219 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE----EE-------------EECCSSCEEEE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee----EE-------------EcCccccceEE
Confidence 457889999999999852 5899999999999999432 111 22 24577899999
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
+|+|+|++|++|+ |+.|++||+.....+...+.. ...+ .+++|+|++++++++ .|+.|++|+
T Consensus 220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v---------------~~v~~sp~~~~la~~-~d~~v~iw~ 282 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-GSTI---------------NQIAFNPKLQWVAVG-TDQGVKIFN 282 (343)
T ss_dssp EECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSCE---------------EEEEECSSSCEEEEE-ESSCEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-CCcE---------------EEEEECCCCCEEEEE-CCCCEEEEE
Confidence 9999999999986 699999999543444444432 2222 799999999888755 577899999
Q ss_pred cCCCCcce-EEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEe
Q 010801 413 HGVGSAGG-ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 491 (501)
Q Consensus 413 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 491 (501)
+.+++... ..+..+ + .. ......+|...|++++|+|+|++||+|
T Consensus 283 ~~~~~~~~~~~~~~~----------~--~~-----------------------~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 283 LMTQSKAPVCTIEAE----------P--IT-----------------------KAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp SSSCCSCSEEECCCC----------S--GG-----------------------GBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred eCCCCCCceEEeecC----------c--ch-----------------------hhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 98764321 011100 0 00 011123566789999999999999999
Q ss_pred eCCe-EEEEe
Q 010801 492 NGNS-LFFHY 500 (501)
Q Consensus 492 ~~~~-~~i~~ 500 (501)
+.|+ +++|+
T Consensus 328 ~~Dg~v~~w~ 337 (343)
T 2xzm_R 328 FTDGVIRTFS 337 (343)
T ss_dssp ETTSEEEEEE
T ss_pred cCCceEEEEE
Confidence 9655 88986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=324.66 Aligned_cols=338 Identities=11% Similarity=0.176 Sum_probs=262.4
Q ss_pred cccccceEEEEEccCCC-EEEEE----------ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee
Q 010801 29 LQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~-~latg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (501)
+.+...|.+++|+|+|+ +||+| +.||.|+|||+.+++.. +... .
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~-~ 63 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIA-S 63 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSC-C
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEE-E
Confidence 44567899999999997 99999 88999999999876421 0111 2
Q ss_pred ccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccC
Q 010801 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (501)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (501)
..|. ..|.+++|+ +++.+|++++.|+.|++|++.+....
T Consensus 64 ~~~~------------~~v~~~~~s--~~~~~l~~~~~dg~v~vw~~~~~~~~--------------------------- 102 (416)
T 2pm9_A 64 LQVD------------SKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANNA--------------------------- 102 (416)
T ss_dssp CCCS------------SCEEEEEEC--SSSSCEEEEESSSCEEEECCSSTTSC---------------------------
T ss_pred EecC------------CceEEEEEC--CCCCeEEEEccCCeEEEeeccccccc---------------------------
Confidence 2466 889999998 78999999999999999999872100
Q ss_pred CCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCC-----
Q 010801 178 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD----- 250 (501)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~----- 250 (501)
......+ .+|...|.+++|+|+ +++|+++ .|+.|++||+....
T Consensus 103 -----------------------------~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 103 -----------------------------INSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp -----------------------------CCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred -----------------------------ccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 0011122 689999999999998 8899999 99999999998554
Q ss_pred -eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 251 -QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.... ......|...|.+++|+|++..+|++++.||.|++||+++++.. ..+..+. ...+|...
T Consensus 153 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~-------~~~~~~~~ 216 (416)
T 2pm9_A 153 YTPLT-----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTS-------PNSGIKQQ 216 (416)
T ss_dssp CCCBC-----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCC-------CSSCCCCC
T ss_pred ccccc-----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEeccc-------cccccCCc
Confidence 2211 11346789999999999994489999999999999999987543 2332210 01234678
Q ss_pred eeEEEEeeCC-CEEEEEcC-C---cEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcC-CCcEEEEE
Q 010801 330 ISDIKFANDG-QHLLSRDY-M---NLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG 402 (501)
Q Consensus 330 i~~~~~sp~~-~~l~~~~~-~---~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~ 402 (501)
+.+++|+|++ .+|+++++ + .|++||+++...++..+. +|...+ ++++|+| ++++|+++
T Consensus 217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI---------------LSLDWCHQDEHLLLSS 281 (416)
T ss_dssp EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE---------------EEEEECSSCSSCEEEE
T ss_pred eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce---------------eEEEeCCCCCCeEEEE
Confidence 9999999997 57887754 6 999999986446777777 777655 7999999 99999999
Q ss_pred eCCCeEEEEecCCCCcceEEEecccCcccceeeccCCcc-ccCccceeeeecccce-eeccccCCcccc-----------
Q 010801 403 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA-RRSSLSNLTRGLYRQA-HENSSSGHHELS----------- 469 (501)
Q Consensus 403 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~iw~~~~~~~~~----------- 469 (501)
+.||.|++||+.+++ ....+..|...+.+++|+| ++ .+ +++++.|+. .+|+........
T Consensus 282 ~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~s~--~~~~~-----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 353 (416)
T 2pm9_A 282 GRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAP--EAPDL-----FACASFDNKIEVQTLQNLTNTLDEQETETKQQE 353 (416)
T ss_dssp ESSSEEEEECSSSCC-EEEEEECSSSCCCCEEECT--TCTTE-----EEECCSSSEEEEEESCCCCCSSCC---------
T ss_pred eCCCCEEEeeCCCCc-cceeecCCCCceEEEEECC--CCCCE-----EEEEecCCcEEEEEccCCCCCcccccccccccC
Confidence 999999999999884 4588999999999999999 44 66 899999999 999554222111
Q ss_pred --------------------------cccCCCeEEEEEccCCCEEEEeeCC-eEEEEeC
Q 010801 470 --------------------------YNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 470 --------------------------~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~~ 501 (501)
..+...+..++|+|+|++||+++.| .++||+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 354 SETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp -------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred CcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 0156778899999999999999955 4988863
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=314.17 Aligned_cols=304 Identities=15% Similarity=0.198 Sum_probs=239.5
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...+.+|.
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~---------------------------~~~~~~h~------- 108 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK---------------------------THAIKLHC------- 108 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---------------------------EEEEECCC-------
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------------------------ceEEecCC-------
Confidence 36999999999999999999999999999999887653 36788898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|+.+++|++.+.......
T Consensus 109 -----~~v~~~~~s--~~g~~las~~~d~~v~iw~~~~~~~~~~~----------------------------------- 146 (380)
T 3iz6_a 109 -----PWVMECAFA--PNGQSVACGGLDSACSIFNLSSQADRDGN----------------------------------- 146 (380)
T ss_dssp -----TTCCCCEEC--TTSSEEEECCSSSCCEEEECCCCSSCCCS-----------------------------------
T ss_pred -----CCEEEEEEC--CCCCEEEEeeCCCcEEEEECCCCccccCC-----------------------------------
Confidence 889999998 89999999999999999998754311000
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
....+. +.+|...|.++.|+|++ ..|++| .|++|++||+.+ ++.+..+.. ....+|
T Consensus 147 ------------------~~~~~~-~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~--~~~~~h 204 (380)
T 3iz6_a 147 ------------------MPVSRV-LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGS--EFPSGH 204 (380)
T ss_dssp ------------------STTCCB-CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT-CCEEEEECC--CSSSSC
T ss_pred ------------------ccceee-ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC-CcEEEEeec--ccCCCC
Confidence 000011 26899999999999964 568888 999999999994 444443211 123678
Q ss_pred ccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 267 TEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
...|.+++|+| ++ ++|++|+.|+.|++||++..... ...+ .+|...|.+++|+|++++|+++
T Consensus 205 ~~~v~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~~~~---~~~~-------------~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 205 TADVLSLSINSLNA-NMFISGSCDTTVRLWDLRITSRA---VRTY-------------HGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp CSCEEEEEECSSSC-CEEEEEETTSCEEEEETTTTCCC---CEEE-------------CCCSSCCCEEEECTTSSEEEEE
T ss_pred ccCeEEEEeecCCC-CEEEEEECCCeEEEEECCCCCcc---eEEE-------------CCcCCCeEEEEEecCCCeEEEE
Confidence 99999999987 55 99999999999999999854211 1233 4578899999999999999998
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE-
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV- 423 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 423 (501)
+ |++|++||+++ ++.+..+..+..... .....+++++|+|+|++|++|+.||.|++||+..++.. ..+
T Consensus 268 s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~ 337 (380)
T 3iz6_a 268 SDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV-LNLG 337 (380)
T ss_dssp CSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE-EEEC
T ss_pred cCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE-EEEe
Confidence 6 59999999986 777777765433210 01111278999999999999999999999999887543 444
Q ss_pred ---ecccCcccceeeccCCccccCccceeeeecccce-eeccccC
Q 010801 424 ---EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 424 ---~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
.+|...|.+++++| ++.+ |++|+.|+. ++|+...
T Consensus 338 ~~~~~h~~~v~~l~~s~--dg~~-----l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSS--DGSA-----LCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSCSSCCCCCCEEEECS--SSSE-----EEEECTTSCEEEEECCS
T ss_pred cccCCCCCceEEEEECC--CCCE-----EEEeeCCCCEEEEecCC
Confidence 68999999999999 7777 999999999 9996553
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=316.05 Aligned_cols=328 Identities=12% Similarity=0.124 Sum_probs=252.9
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
+.+++++|+|+|++|++|+.||.|++||+.+++.. ..+..|.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------~~~~~~~----------- 98 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------KMLKRAD----------- 98 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------TTSCSCC-----------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------eEEecCC-----------
Confidence 44568999999999999999999999998876542 2233332
Q ss_pred ccceeEE-EEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 113 EEKINRV-RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 113 ~~~V~~v-~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+..+ .|+ +++++|++++.|+.|++||+.+++.....
T Consensus 99 ---~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------------------- 135 (420)
T 3vl1_A 99 ---YTAVDTAK--LQMRRFILGTTEGDIKVLDSNFNLQREID-------------------------------------- 135 (420)
T ss_dssp ---EEEEEEEC--SSSCEEEEEETTSCEEEECTTSCEEEEET--------------------------------------
T ss_pred ---ceEEEEEe--cCCCEEEEEECCCCEEEEeCCCcceeeec--------------------------------------
Confidence 4444 554 78999999999999999999876644322
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+|...|.+++|+|++++|++| .|+.|++||++... .... +.+|...|
T Consensus 136 -----------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~-------~~~h~~~v 184 (420)
T 3vl1_A 136 -----------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRT-------LIGHRATV 184 (420)
T ss_dssp -----------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEE-------EECCSSCE
T ss_pred -----------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceE-------EcCCCCcE
Confidence 6899999999999999999999 99999999999443 3332 56899999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc-----------ceeeecccceeEEEEeeCC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----------SFFTEIIASISDIKFANDG 339 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~h~~~i~~~~~sp~~ 339 (501)
.+++|+|++ ++|++++.||.|++||+++++.. ..+..+....... .....+...+.+++|+|++
T Consensus 185 ~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 185 TDIAIIDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp EEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred EEEEEcCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 999999998 99999999999999999987644 3333211111100 0112234667778889999
Q ss_pred CEEEEEc-CCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCC
Q 010801 340 QHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 340 ~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~ 416 (501)
++|++++ ++.|++||+++ ++.+..+. .|...+ ++++|+|+++ +|++|+.||.|++||+.++
T Consensus 260 ~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp EEEEEEETTSCEEEEETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CEEEEEcCCCeEEEEECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999886 59999999986 55555553 344443 7999999999 9999999999999999988
Q ss_pred CcceEEEec-ccCcccceeeccCCccccCccceeeeecccce-eeccccC-----------CcccccccCCCeEEEEEcc
Q 010801 417 SAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-----------HHELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 417 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-----------~~~~~~~~~~~i~~~~~sp 483 (501)
+.....+.. |...+..+.+ + ++.+ |++++.|+. ++|+... .......+...|.+++|+|
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~-~--~~~~-----l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 395 (420)
T 3vl1_A 324 ECPVGEFLINEGTPINNVYF-A--AGAL-----FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS 395 (420)
T ss_dssp TSCSEEEEESTTSCEEEEEE-E--TTEE-----EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred cCchhhhhccCCCCceEEEe-C--CCCE-----EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence 665677777 5666777754 4 4566 899999999 9995432 1123446778999999999
Q ss_pred CCC----EEEEeeCCeEEEEeC
Q 010801 484 TTN----LIACANGNSLFFHYA 501 (501)
Q Consensus 484 ~~~----~la~~~~~~~~i~~~ 501 (501)
+++ ++++|..+.+.+|+.
T Consensus 396 ~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 396 DDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp CSSSSCEEEEEETTTEEEEEES
T ss_pred CCCCcceEEEEcCCceEEEEec
Confidence 999 777777888999973
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=314.23 Aligned_cols=329 Identities=15% Similarity=0.169 Sum_probs=256.8
Q ss_pred ccccccceEEEEEccCCC-EEEEEecCCcEEEEEe----cCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc---
Q 010801 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--- 99 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 99 (501)
...|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++.. ..+ .....+...+.+
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-------WKL----------TIIAELRHPFALSAS 103 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-------EEE----------EEEEEEECCCCCC--
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-------ccc----------ccccccccccccccc
Confidence 345779999999999999 9999999999999999 766420 000 001111122222
Q ss_pred ---CCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcccc
Q 010801 100 ---HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (501)
Q Consensus 100 ---h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (501)
|. +.|++++|+ |++++|++++.|+.|++|| .+++....
T Consensus 104 ~~~~~------------~~v~~~~~s--~~~~~l~~~~~dg~i~i~~-~~~~~~~~------------------------ 144 (425)
T 1r5m_A 104 SGKTT------------NQVTCLAWS--HDGNSIVTGVENGELRLWN-KTGALLNV------------------------ 144 (425)
T ss_dssp ----C------------BCEEEEEEC--TTSSEEEEEETTSCEEEEE-TTSCEEEE------------------------
T ss_pred ccCCC------------CceEEEEEc--CCCCEEEEEeCCCeEEEEe-CCCCeeee------------------------
Confidence 45 789999998 7899999999999999999 33332222
Q ss_pred CCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeee
Q 010801 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 255 (501)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (501)
+ ..|...|.+++|+|++++|+++ .|+.|++||+. .+.....
T Consensus 145 ------------------------------------~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~ 186 (425)
T 1r5m_A 145 ------------------------------------L-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGTVMQH 186 (425)
T ss_dssp ------------------------------------E-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTEEEEE
T ss_pred ------------------------------------c-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEE
Confidence 1 6788999999999999999998 99999999998 4444443
Q ss_pred eecCCCCCCCcccc---------------eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc
Q 010801 256 VDMKPSNMDDLTEV---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (501)
Q Consensus 256 ~~~~~~~~~~~~~~---------------v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (501)
+..+... +.+++|+|++ .+++++.||.|++||+++++.. ..+.
T Consensus 187 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~----~~~~--------- 244 (425)
T 1r5m_A 187 -------FELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT----GKLI--------- 244 (425)
T ss_dssp -------ECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----EEEC---------
T ss_pred -------eeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----eeec---------
Confidence 2333333 8899999985 5888999999999999886533 2332
Q ss_pred ceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 321 SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 321 ~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
+|...|.+++|+|++++|++++ ++.|++||++. ++.+..+..|...+ .+++|+|++ +|
T Consensus 245 ----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l 303 (425)
T 1r5m_A 245 ----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSI---------------VSASWVGDD-KV 303 (425)
T ss_dssp ----CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCE---------------EEEEEETTT-EE
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccE---------------EEEEECCCC-EE
Confidence 3568899999999999999886 59999999986 77888888777655 799999999 99
Q ss_pred EEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--C------------
Q 010801 400 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G------------ 464 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~------------ 464 (501)
++++.||.|++||+.++ .....+..|...+.+++++| ++.+ |++++.++. .+|+.. .
T Consensus 304 ~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQ--DGQK-----YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp EEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECT--TSSE-----EEEEETTSCEEEEECHHHHC-----------
T ss_pred EEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcC--CCCE-----EEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 99999999999999987 45578889999999999998 6777 999999999 999443 2
Q ss_pred --------CcccccccCC--CeEEEEEccCCCEEEEeeCCe-EEEEeC
Q 010801 465 --------HHELSYNLSS--KLLHLAWHPTTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 465 --------~~~~~~~~~~--~i~~~~~sp~~~~la~~~~~~-~~i~~~ 501 (501)
.......+.. .|++++|+|++++|++++.|+ +++|+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 3444556655 999999999999999988655 999973
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=301.47 Aligned_cols=295 Identities=15% Similarity=0.202 Sum_probs=217.9
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-cc-CCcchhhc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDYL 107 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~ 107 (501)
.|.+.|++++|+|+ +||+|+.|++|+|||+.++.. .....+ .+ |.
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------~~~~~~~~~~h~------ 58 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------TLIDVLDETAHK------ 58 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------------EEEEEECTTCCC------
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------------EEEEEEecCCcc------
Confidence 68999999999987 999999999999999886521 233444 34 88
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++|+ |++++|++++.|++|++|++........
T Consensus 59 ------~~v~~v~~s--p~~~~las~s~D~~v~iw~~~~~~~~~~----------------------------------- 95 (330)
T 2hes_X 59 ------KAIRSVAWR--PHTSLLAAGSFDSTVSIWAKEESADRTF----------------------------------- 95 (330)
T ss_dssp ------SCEEEEEEC--TTSSEEEEEETTSCEEEEEC-------C-----------------------------------
T ss_pred ------CCEEEEEEC--CCCCEEEEEeCCCcEEEEEcccCcCccc-----------------------------------
Confidence 889999998 7899999999999999999864321000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC---eeeeeeecCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---QCFNIVDMKPSNM 263 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~ 263 (501)
...+...+ .+|...|.+++|+|++++|++| .|++|++||++..+ +++.. +
T Consensus 96 ------------------~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~-------~ 149 (330)
T 2hes_X 96 ------------------EMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV-------L 149 (330)
T ss_dssp ------------------CCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE-------E
T ss_pred ------------------cceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE-------e
Confidence 01222333 7899999999999999999999 99999999995332 22332 6
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC--CCE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQH 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~ 341 (501)
.+|...|.+++|+|++ ++|++++.|+.|++||..++... .... +.+|...|.+++|+|+ +.+
T Consensus 150 ~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~--~~~~-------------~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 150 QEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE--CVAV-------------LNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp CCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE--EEEE-------------ECCCSSCEEEEEECCSSSSCE
T ss_pred ccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee--EEEE-------------ccCCCCcEEEEEecCCCCeeE
Confidence 7899999999999998 99999999999999998765211 0122 3457889999999998 678
Q ss_pred EEEEc-CCcEEEEEeeCCC-------CceeEeec-cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 342 LLSRD-YMNLKLWDIRMDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
|++++ |++|++||++... .....+.. |...+ ++++|++++ +|++++.||.|+||+
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV---------------YNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE---------------EEEEECTTS-CEEEEETTSCEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccce---------------EEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 88875 6999999997421 12223332 44433 799999765 899999999999999
Q ss_pred cCCCCc--ceEEEecccC-cccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 413 HGVGSA--GGITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 413 ~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
..++.. ....+.+|.. .+.+++++|..++.+ |++|+.|+. ++|+..
T Consensus 278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~-----las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI-----LATGGDDGIVNFWSLE 327 (330)
T ss_dssp EETTEEEEEEEESCTTTTSCEEEEEEC-----CC-----EEEEETTSEEEEEEC-
T ss_pred cCCCceEEEeccccccccceEEEEEEecCCCceE-----EEEecCCCcEEEEEec
Confidence 987632 2233467877 899999998656777 999999999 999543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=353.89 Aligned_cols=395 Identities=14% Similarity=0.163 Sum_probs=289.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~---------------------------~~~~~~~~-------- 699 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL---------------------------VHTYDEHS-------- 699 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECCS--------
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce---------------------------EEEEcCCC--------
Confidence 5899999999999999999999999999999987753 46788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+|..++.++++++.|+.|++||+.+++....... +.+.+..+.+.++...++++.
T Consensus 700 ----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 700 ----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-------------HTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp ----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-------------CSSCEEEEEECSSTTEEEEEE
T ss_pred ----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-------------CCCCEEEEEEecCCCEEEEEE
Confidence 889999998554677899999999999999999886655432 123344445555555555554
Q ss_pred eccCcceEEEeccCceee---------------------------------------------------eeeEeecCCcc
Q 010801 190 WTENMATKIANVGNSVHA---------------------------------------------------RCQKVYPHAHD 218 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~---------------------------------------------------~~~~~~~~~~~ 218 (501)
. ++.+++||+...... .....+..+|.
T Consensus 763 ~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 763 A--DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp S--SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred C--CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence 3 566667766543211 12222324788
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
..|.+++|+|+++.++++ .|+.|++||+.+ +..... +.+|...|.+++|+|++ +.|++++.||.|++||+
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVAD-------CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWET 911 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEH
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-Cceeee-------cCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEc
Confidence 999999999999999999 999999999994 444443 67899999999999999 99999999999999997
Q ss_pred cCCcccc----------------------------------------------------------------cccceeecc
Q 010801 298 RQSALCD----------------------------------------------------------------HSARILRDA 313 (501)
Q Consensus 298 ~~~~~~~----------------------------------------------------------------~~~~~~~~~ 313 (501)
.+..... ..+.++..
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~- 990 (1249)
T 3sfz_A 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL- 990 (1249)
T ss_dssp HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET-
T ss_pred cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc-
Confidence 6421000 00011111
Q ss_pred cccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecccccccc------------------
Q 010801 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK------------------ 374 (501)
Q Consensus 314 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~------------------ 374 (501)
........+.+|...|.+++|+|+|++|++++ |+.|++||+.+ ++... +..|...+..
T Consensus 991 -~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 991 -PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp -TTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEE
T ss_pred -CCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceEE-EecCCCcEEEEEEcCCCcEEEEECCCcE
Confidence 00111223467889999999999999999885 59999999864 33221 1122111110
Q ss_pred -ccccCCCCC-------cceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCcc
Q 010801 375 -LCDLYNNDS-------IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 446 (501)
Q Consensus 375 -~~~~~~~~~-------~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 446 (501)
++++..... ...+++++|+|++++|++++.||.|++||+.++.. ...+.+|...|.+++|+| ++++
T Consensus 1068 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-~~~l~~h~~~v~~~~~s~--dg~~--- 1141 (1249)
T 3sfz_A 1068 KVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-LHELKGHNGCVRCSAFSL--DGIL--- 1141 (1249)
T ss_dssp EEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-SBCCCCCSSCEEEEEECS--SSSE---
T ss_pred EEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-eeeeccCCCcEEEEEECC--CCCE---
Confidence 011110000 01237899999999999999999999999998854 478899999999999999 7778
Q ss_pred ceeeeecccce-eecccc--CCcccc---------cccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 447 SNLTRGLYRQA-HENSSS--GHHELS---------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 447 ~~l~~~~~~~~-~iw~~~--~~~~~~---------~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
|++|+.|+. .+|+.. +..... ..|...|++++|+||+++|++++ +.+++|+
T Consensus 1142 --lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd 1204 (1249)
T 3sfz_A 1142 --LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWN 1204 (1249)
T ss_dssp --EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBC
T ss_pred --EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEE
Confidence 999999999 999544 232222 46788999999999999999886 7899997
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=308.14 Aligned_cols=300 Identities=15% Similarity=0.160 Sum_probs=240.5
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
...+...+++|. +.|++++|+ |++++|++|+.|++|++||+.+++.....
T Consensus 55 ~~~~~~~l~gH~------------~~V~~~~~s--p~~~~l~s~s~D~~v~iWd~~~~~~~~~~---------------- 104 (380)
T 3iz6_a 55 DLVCCRTLQGHS------------GKVYSLDWT--PEKNWIVSASQDGRLIVWNALTSQKTHAI---------------- 104 (380)
T ss_dssp CCEEEEEECCCS------------SCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEE----------------
T ss_pred eeEEeecccccc------------cEEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCccceEE----------------
Confidence 445668899999 999999998 78999999999999999999887644332
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..|...|.+++|+|++++|++| .|+.+++||+..
T Consensus 105 ---------------------------------------------~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 105 ---------------------------------------------KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp ---------------------------------------------ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred ---------------------------------------------ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 5788899999999999999999 999999999874
Q ss_pred CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
........ .....+.+|...|.++.|.|+++..|++++.|++|++||+++++.. ..+.. ....+|..
T Consensus 140 ~~~~~~~~-~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----~~~~~--------~~~~~h~~ 206 (380)
T 3iz6_a 140 QADRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI----SIFGS--------EFPSGHTA 206 (380)
T ss_dssp CSSCCCSS-TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE----EEECC--------CSSSSCCS
T ss_pred CccccCCc-cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE----EEeec--------ccCCCCcc
Confidence 32110000 0012367899999999999986478999999999999999987643 22211 01235788
Q ss_pred ceeEEEEee-CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 329 SISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 329 ~i~~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
.|.+++|+| ++++|++|+ |+.|++||++...+.+..+.+|...+ ++++|+|++++|++|+.||
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI---------------NSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC---------------CEEEECTTSSEEEEECSSS
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe---------------EEEEEecCCCeEEEEcCCC
Confidence 999999987 788999886 69999999985567888899998876 7999999999999999999
Q ss_pred eEEEEecCCCCcceEEEeccc-------CcccceeeccCCccccCccceeeeecccce-eecccc--CCcccc----ccc
Q 010801 407 LLRIFSHGVGSAGGITVEAGK-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELS----YNL 472 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~----~~~ 472 (501)
+|++||+.++..+ ..+..+. ..+.+++|+| ++++ |++|+.++. .+|+.. +..... ..|
T Consensus 272 ~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 272 TCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSI--SGRL-----LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp CEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECS--SSSE-----EEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred eEEEEECCCCcEE-EEecccccccccccCceEEEEECC--CCCE-----EEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 9999999988443 4444432 2478999998 7788 999999999 999543 222222 578
Q ss_pred CCCeEEEEEccCCCEEEEeeCC-eEEEEe
Q 010801 473 SSKLLHLAWHPTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~~~-~~~i~~ 500 (501)
...|++++|+|+|++||+|+.| .+++|+
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 9999999999999999999955 599997
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=320.82 Aligned_cols=336 Identities=12% Similarity=0.050 Sum_probs=235.8
Q ss_pred ccccccceEEEEEccCC---------CEEEEE-------------------ecCCcEEEEEecCCcCCCCccchhhhhhh
Q 010801 28 ELQDVDIVSAIEFDKTG---------DYLAVG-------------------DRGGRVILFETVGGKNTPNQHISRSELEK 79 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g---------~~latg-------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 79 (501)
.+.+.+.|.+|+|+|++ ++||+| +.|++|+||++.+++..
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------ 196 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------ 196 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC------------
Confidence 34567899999999986 677774 46789999999877541
Q ss_pred ccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec----CCCCEEEEeeCCCeEEEEeccccceeeeecc
Q 010801 80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (501)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~----~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~ 155 (501)
......+.+|. +.|.+|+|+|. +++.+|++++.||+|++||+.++........
T Consensus 197 -----------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 197 -----------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp -----------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred -----------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 11223456777 88999999964 3467999999999999999986542100000
Q ss_pred CCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE
Q 010801 156 DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS 235 (501)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 235 (501)
. ...+...+ .+|...|++++|++++ .|++
T Consensus 254 ~-------------------------------------------------~~~p~~~l-~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 254 M-------------------------------------------------CEKPSLTL-SLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp C-------------------------------------------------CCSCSEEE-CCTTTCEEEEEESSSS-EEEE
T ss_pred e-------------------------------------------------ecCceEEE-EcCCCCEEEEEecCCC-eEEE
Confidence 0 00111222 6889999999999865 7888
Q ss_pred E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE--EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeec
Q 010801 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (501)
Q Consensus 236 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 312 (501)
| .||+|++||++........ +.+|...|+++ .|+|++.++|++++.|++|++||+++++.. ..+..
T Consensus 283 gs~DgtV~lWD~~~~~~~~~~-------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~~~~ 351 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPEVPSFY-------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KTTVS 351 (524)
T ss_dssp EETTSEEEEEETTBCSSCSEE-------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CEEEE
T ss_pred EeCCCEEEEEECCCCCCceEE-------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----ccccc
Confidence 8 9999999999854333322 57899999999 567764378999999999999999986543 33333
Q ss_pred ccccCCCcceeeecc--cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeE
Q 010801 313 AAESHGSKSFFTEII--ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (501)
Q Consensus 313 ~~~~~~~~~~~~~h~--~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (501)
|. ..|.+++|+|+++.+++++ |++|++||++. +..+..+.+|...+ ++
T Consensus 352 -------------~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~s 402 (524)
T 2j04_B 352 -------------RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TA 402 (524)
T ss_dssp -------------ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EE
T ss_pred -------------ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EE
Confidence 22 2478999999999998875 58999999986 77778888888876 89
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-----ccCcccceeeccCCccccCccceeeeecccceeec--c-
Q 010801 390 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--S- 461 (501)
Q Consensus 390 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw--~- 461 (501)
++|+|++++|++|+.||+|+|||+... .+ ...+. +...++.++++| ++.. + .. .+...+| .
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~-~~~~~~~~~~~~~~v~~v~~sp--~g~~-----~-~~-~~~~~~~~~~~ 471 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARR-LL-HGIKNSSATQKSLRLWKWDYSI--KDDK-----Y-RI-DSSYEVYPLTV 471 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSS-TT-TCC------CCCCEEEECBCCS--SSCE-----E-EE-CCCCCCCC---
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHh-hc-cccccCccceeeeEEEEeccCC--CCCe-----E-Ec-cCCceeccccc
Confidence 999999999999999999999998654 22 22111 112467888887 4433 2 11 2222444 2
Q ss_pred ccCCcccccccCCCeEEEEEccCCC---EEEEeeCC-eEEEEe
Q 010801 462 SSGHHELSYNLSSKLLHLAWHPTTN---LIACANGN-SLFFHY 500 (501)
Q Consensus 462 ~~~~~~~~~~~~~~i~~~~~sp~~~---~la~~~~~-~~~i~~ 500 (501)
.+.....+.+|...|.+++|||+++ +||+|+.+ .++||.
T Consensus 472 ~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 472 NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 2445566778999999999999965 99999975 499996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=317.92 Aligned_cols=385 Identities=11% Similarity=0.099 Sum_probs=288.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+++ ++.|+||++.++.. ..+....+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence 35789999999999999999998 88999999987611 112347788998
Q ss_pred ccccccc-eeEEEEeecC--CCCEEEEeeCCCeEEEEecccc------ceeeeeccCCCcccccccccccccCccccCCC
Q 010801 109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (501)
Q Consensus 109 ~~~~~~~-V~~v~~~~~~--~~~~l~s~s~d~~i~lw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
+. |++++|+ | ++++|++++.||.|++||+.++ ........ ..+...+..+.+.
T Consensus 64 -----~~~v~~~~~s--p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s 125 (615)
T 1pgu_A 64 -----SSVVTTVKFS--PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-----------QVLAGPISDISWD 125 (615)
T ss_dssp -----TSCEEEEEEC--SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-----------ECCSSCEEEEEEC
T ss_pred -----CceEEEEEEC--cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-----------hcccccEEEEEEe
Confidence 88 9999998 7 8999999999999999999755 22221111 1123456677777
Q ss_pred CCCcccccceeccC--cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeee
Q 010801 180 PSFAHGYHLEWTEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNI 255 (501)
Q Consensus 180 ~~~~~~~~~~~~~~--~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (501)
++...++.+....+ +.+.+|+.. +....+ .+|...|.+++|+|+++ .++++ .|+.|++||+. ..+....
T Consensus 126 ~~~~~l~~~~~~~~~~~~v~~~d~~-----~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~ 198 (615)
T 1pgu_A 126 FEGRRLCVVGEGRDNFGVFISWDSG-----NSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSAS 198 (615)
T ss_dssp TTSSEEEEEECCSSCSEEEEETTTC-----CEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEE
T ss_pred CCCCEEEEeccCCCCccEEEEEECC-----Ccceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccceeee
Confidence 88888777764322 577777732 344555 78999999999999998 78888 99999999998 4444443
Q ss_pred eecCCCCCCCccc---ceEEEEEecC-CCcEEEEEeCCCeEEEEEccCCccccccccee-ecccccCCCcceeeecccce
Q 010801 256 VDMKPSNMDDLTE---VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 256 ~~~~~~~~~~~~~---~v~~v~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~i 330 (501)
+.+|.. .|.+++|+|+ + ++|++++.||.|++||+++++.. ..+ .. ..+|...|
T Consensus 199 -------~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----------~~~~~~~v 256 (615)
T 1pgu_A 199 -------DRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----------QEPVQGGI 256 (615)
T ss_dssp -------ECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT----------TBCCCSCE
T ss_pred -------ecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc----------ccccCCce
Confidence 567888 9999999999 8 99999999999999999887543 222 10 00356789
Q ss_pred eEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc-----------------------------------------
Q 010801 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH----------------------------------------- 368 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~----------------------------------------- 368 (501)
.+++|+ ++++|++++ ++.|++||+++ ++.+..+..+
T Consensus 257 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~ 334 (615)
T 1pgu_A 257 FALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT 334 (615)
T ss_dssp EEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEE
T ss_pred EEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEE
Confidence 999999 888888875 58999999864 4433333222
Q ss_pred ----cccccc----------------------------------------------------cccc--------------
Q 010801 369 ----EHLRPK----------------------------------------------------LCDL-------------- 378 (501)
Q Consensus 369 ----~~~~~~----------------------------------------------------~~~~-------------- 378 (501)
...+.. ++++
T Consensus 335 ~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 414 (615)
T 1pgu_A 335 ISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASA 414 (615)
T ss_dssp ECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEE
T ss_pred EeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEE
Confidence 100000 0000
Q ss_pred --------------------------------------------------------------------CCCCCcceeeEE
Q 010801 379 --------------------------------------------------------------------YNNDSIFDKFEC 390 (501)
Q Consensus 379 --------------------------------------------------------------------~~~~~~~~~~~~ 390 (501)
.-......++++
T Consensus 415 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (615)
T 1pgu_A 415 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494 (615)
T ss_dssp CSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred cCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE
Confidence 000011135789
Q ss_pred EEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-ccCcccceeeccCC--------ccccCccceeeeecccce-eec
Q 010801 391 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAP--------RARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 391 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~--------~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+|+|++++|++++.||.|++||+.+++. ...+.+ |...+.+++|+|.. ++++ |++++.|+. ++|
T Consensus 495 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~-----l~~~~~dg~i~iw 568 (615)
T 1pgu_A 495 SISPSETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEEIEEDL-----VATGSLDTNIFIY 568 (615)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEEECCCC------CCSCCE-----EEEEETTSCEEEE
T ss_pred EECCCCCEEEEcCCCCeEEEeeCCCCcc-eeEeecCCCCceeEEEEcCccccccccccCCCE-----EEEEcCCCcEEEE
Confidence 9999999999999999999999998844 466676 99999999999832 5667 999999999 999
Q ss_pred ccc---CCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 461 SSS---GHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 461 ~~~---~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
+.. ........|...|++++|+|+++ |++++.|+ +++|+
T Consensus 569 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 569 SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp ESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 554 34555678999999999999999 88888555 99997
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=295.08 Aligned_cols=300 Identities=16% Similarity=0.169 Sum_probs=228.9
Q ss_pred ccccceEEEEEccC-CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+|.+.|++|+|+|+ +++||||+.||+|+|||+.+++.. ...+...+++|.
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~------- 86 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS------- 86 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS-------
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC-------
Confidence 69999999999997 689999999999999999876542 344567889999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|+.|++|+.............. .........+....++++
T Consensus 87 -----~~V~~~~~s--~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~s~ 146 (340)
T 4aow_A 87 -----HFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-------------KDVLSVAFSSDNRQIVSG 146 (340)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------------SCEEEEEECTTSSCEEEE
T ss_pred -----CCEEEEEEC--CCCCEEEEEcccccceEEeecccceeeeecCCC-------------CceeEEEEeecCccceee
Confidence 899999998 899999999999999999998876555442221 222233344455556555
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.. ++.+++|+...... ......+|...+..++|++++ .+++++ .|+.|++||+. ..+.... +.+
T Consensus 147 s~--d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~-------~~~ 213 (340)
T 4aow_A 147 SR--DKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTN-------HIG 213 (340)
T ss_dssp ET--TSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEE-------ECC
T ss_pred cC--CCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeE-------ecC
Confidence 43 88999999875322 222237899999999998764 467777 99999999999 4444443 678
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|++++|+|++ ++|++++.||.|++||+++.+.. ..+.. ...+..+.|+|++.+++++
T Consensus 214 h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 214 HTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLCAA 274 (340)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEEEE
T ss_pred CCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceeecc
Confidence 99999999999999 99999999999999999987543 33333 3579999999999888888
Q ss_pred cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.|+.|++||++. ...+..+..+..... ...+.. .|++++|+|+|++|++|+.||.|+|||+++|.
T Consensus 275 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~---~~~h~~---~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 275 TGPSIKIWDLEG-KIIVDELKQEVISTS---SKAEPP---QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTEEEEEETTT-TEEEEEECCC----------CCCC---CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCC-CeEEEeccccceeee---ccCCCC---CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 889999999975 555555543221100 000111 23799999999999999999999999999884
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=297.42 Aligned_cols=290 Identities=14% Similarity=0.160 Sum_probs=236.7
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
+....+++|. +.|++++|+ |++.+|++|+.|++|++||..+++.....
T Consensus 55 ~~~~~l~gH~------------~~V~~~~~s--~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~------------------ 102 (354)
T 2pbi_B 55 KTRRTLKGHG------------NKVLCMDWC--KDKRRIVSSSQDGKVIVWDSFTTNKEHAV------------------ 102 (354)
T ss_dssp CEEEEEECCS------------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE------------------
T ss_pred EEEEEecCCC------------CeEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCCcceEE------------------
Confidence 4567889999 999999998 78999999999999999998876644322
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~ 250 (501)
..|...|.+++|+|++..+++| .|+.+++|++....
T Consensus 103 -------------------------------------------~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 103 -------------------------------------------TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp -------------------------------------------ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred -------------------------------------------ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 4567789999999999999999 99999999987332
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
..... .....+..|...|.+++|+|++ ..|++++.|++|++||+++++.. ..+ .+|...|
T Consensus 140 ~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~----~~~-------------~~h~~~v 199 (354)
T 2pbi_B 140 NENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL----QSF-------------HGHGADV 199 (354)
T ss_dssp TCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEE-------------ECCSSCE
T ss_pred ccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE----EEE-------------cCCCCCe
Confidence 10000 0011256799999999999998 99999999999999999987543 333 3467889
Q ss_pred eEEEEee--CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 331 SDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 331 ~~~~~sp--~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
.+++|+| ++++|++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++.+|++|+.|++
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDV---------------NSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSC
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCe---------------EEEEEeCCCCEEEEEeCCCe
Confidence 9999988 578999885 69999999986 88888898888765 79999999999999999999
Q ss_pred EEEEecCCCCcceEEEecc--cCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEc
Q 010801 408 LRIFSHGVGSAGGITVEAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWH 482 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~s 482 (501)
|++||+..+... ..+..+ ...+.+++|+| ++++ |++|+.|+. ++|+. +.......+|...|++++|+
T Consensus 264 v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~--~g~~-----l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 264 CRLYDLRADREV-AIYSKESIIFGASSVDFSL--SGRL-----LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp EEEEETTTTEEE-EEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCCCcEE-EEEcCCCcccceeEEEEeC--CCCE-----EEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence 999999877433 344332 34677889988 7777 999999999 99954 34455667899999999999
Q ss_pred cCCCEEEEeeCCe-EEEEe
Q 010801 483 PTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 483 p~~~~la~~~~~~-~~i~~ 500 (501)
|++++||+++.|+ +++|+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 9999999999554 99985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=330.80 Aligned_cols=323 Identities=16% Similarity=0.169 Sum_probs=264.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~---------------------------~~~~~~~~-------- 55 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE---------------------------VRSIQVTE-------- 55 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS--------
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---------------------------EEEEecCC--------
Confidence 6899999999999999999999999999999987643 46778898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|+ |++++|++++.||.|++||+.+++.....
T Consensus 56 ----~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~------------------------------------ 93 (814)
T 3mkq_A 56 ----TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVDF------------------------------------ 93 (814)
T ss_dssp ----SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CcEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCcEEEEE------------------------------------
Confidence 899999998 78999999999999999999987754432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|++++|+|+++.|+++ .|+.|++||+......... +.+|..
T Consensus 94 -------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~~ 141 (814)
T 3mkq_A 94 -------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEH 141 (814)
T ss_dssp -------------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-------EECCSS
T ss_pred -------------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-------EcCCCC
Confidence 5788999999999999999999 9999999999855455443 567899
Q ss_pred ceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee--CCCEEEEE
Q 010801 269 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSR 345 (501)
Q Consensus 269 ~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~~~ 345 (501)
.|.+++|+| ++ +.|++++.||.|++||+.++... ..+.. .|...+..++|+| ++.+|+++
T Consensus 142 ~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 142 FVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLTT------------GQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp CEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEEC------------CCTTCCCEEEECCSTTCCEEEEE
T ss_pred cEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEec------------CCCCCEEEEEEEECCCCCEEEEE
Confidence 999999999 76 89999999999999999876533 22222 1346899999999 99999998
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+ ++.|++||+++ ++.+..+.+|...+ .+++|+|++++|++++.||.|++||+.++ .....+.
T Consensus 205 ~~dg~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~ 267 (814)
T 3mkq_A 205 SDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN 267 (814)
T ss_dssp CTTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC
T ss_pred eCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee
Confidence 6 59999999986 78888888887765 78999999999999999999999999987 4458889
Q ss_pred cccCcccceeeccCCccccCccceeeeecccceeeccccCCc--------------------------------------
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHH-------------------------------------- 466 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~-------------------------------------- 466 (501)
.|...+.+++++|.....+ ++++..++..+|......
T Consensus 268 ~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (814)
T 3mkq_A 268 VGLERSWCIATHPTGRKNY-----IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD 342 (814)
T ss_dssp CSSSSEEEEEECTTCGGGE-----EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred cCCCcEEEEEEccCCCceE-----EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence 9999999999999532223 555554444555322100
Q ss_pred -------ccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 467 -------ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 467 -------~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.....+...+.+++|+|+|++|++++++.+++|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~ 383 (814)
T 3mkq_A 343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYT 383 (814)
T ss_dssp SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred ccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEE
Confidence 0012234467899999999999999998899986
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=295.45 Aligned_cols=249 Identities=18% Similarity=0.221 Sum_probs=200.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|...|++++|+|++ .|++|+.||+|+|||+.+++.. ......+.+|.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~------- 127 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD------- 127 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS-------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC-------
Confidence 3467789999999986 6889999999999999988652 22334566898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++|+|+ |++++|++|+.|++|++||+.+++.....
T Consensus 128 -----~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~----------------------------------- 165 (344)
T 4gqb_B 128 -----DIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSY----------------------------------- 165 (344)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 899999998 89999999999999999999987755432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|.+++|+|++. +|++| .|++|++||+++.. ....+ ....+
T Consensus 166 --------------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~-----~~~~~ 213 (344)
T 4gqb_B 166 --------------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQI-----GCSAP 213 (344)
T ss_dssp --------------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEEC-----C----
T ss_pred --------------------------cCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeee-----eccee
Confidence 78999999999999885 67888 99999999999544 33321 13456
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~ 345 (501)
...+.+++|+|++.++|++|+.||.|++||+++++.. ..+ .+|...|.+++|+|++ ++|++|
T Consensus 214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~-------------~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSS-------------AVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEE-------------ECCSSCEEEEEECSSSSCCEEEE
T ss_pred eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEE-------------cCCCCCEEEEEEccCCCeEEEEE
Confidence 6779999999976589999999999999999987543 333 3477899999999998 578887
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCC
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~ 416 (501)
+ |++|+|||+++ ++ +..+.+|...+ ++++|+|+++ +|++++.||+|++|++.+.
T Consensus 277 s~D~~i~vwd~~~-~~-~~~~~~H~~~V---------------~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 277 SEDCSLAVLDSSL-SE-LFRSQAHRDFV---------------RDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ETTSCEEEECTTC-CE-EEEECCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred eCCCeEEEEECCC-Cc-EEEEcCCCCCE---------------EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 5 69999999975 44 45677888765 7999999986 6779999999999999865
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=308.91 Aligned_cols=296 Identities=15% Similarity=0.163 Sum_probs=220.1
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~------- 164 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG------- 164 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS-------
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC-------
Confidence 4788899999999 5679999999999999999877542 445577898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++|+|+| .++.+|++++.||+|++||++++........
T Consensus 165 -----~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------------------------------- 205 (435)
T 4e54_B 165 -----GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFASS--------------------------------- 205 (435)
T ss_dssp -----CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEECC---------------------------------
T ss_pred -----CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEecc---------------------------------
Confidence 8999999984 3678999999999999999987654332210
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..+...+.+++|+|++++|++| .|+.|++||++ ++.. . .+.+|.
T Consensus 206 --------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~-~-------~~~~h~ 250 (435)
T 4e54_B 206 --------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKEL-W-------NLRMHK 250 (435)
T ss_dssp --------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBC-C-------CSBCCS
T ss_pred --------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-ccee-E-------EEeccc
Confidence 2445567889999999999999 99999999998 4332 2 377899
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..|.+++|+|++..+|++++.|+.|++||+++.+... .+. ...+|...|.+++|+|+|++|++++
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----~~~----------~~~~h~~~v~~~~~spdg~~l~s~~~ 316 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----SFL----------YSLPHRHPVNAACFSPDGARLLTTDQ 316 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----CCS----------BCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccc----eEE----------EeeeccccccceeECCCCCeeEEEcC
Confidence 9999999999985689999999999999998765331 111 1235778999999999999999986
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe------------CCCeEEEEecC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFSHG 414 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~------------~dg~i~iwd~~ 414 (501)
|+.|+|||+.+ +.....+..|....... .. .....|+|++.++++++ .++.|++||..
T Consensus 317 D~~i~iwd~~~-~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 317 KSEIRVYSASQ-WDCPLGLIPHPHRHFQH------LT---PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp SSCEEEEESSS-SSSEEEECCCCCCCCSS------SC---CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred CCEEEEEECCC-CccceEEeccccccccc------ce---eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 69999999986 67666666655321100 00 13456777766666654 23578899888
Q ss_pred CCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEE-EEccCCCEEEEeeC
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL-AWHPTTNLIACANG 493 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~-~~sp~~~~la~~~~ 493 (501)
+++.+.....+| ...|.++ +|||+|++||+|++
T Consensus 387 ~g~~~~~l~~~~----------------------------------------------~~~v~s~~~fspdg~~lasg~d 420 (435)
T 4e54_B 387 SGKMMCQLYDPE----------------------------------------------SSGISSLNEFNPMGDTLASAMG 420 (435)
T ss_dssp SCCEEEEECCSS----------------------------------------------CCCCCCEEEECTTSSCEEEECS
T ss_pred CCcEEEEEeCCC----------------------------------------------CCcEEEEEEECCCCCEEEEEcC
Confidence 774432111222 2244454 68888888888887
Q ss_pred CeEEEEeC
Q 010801 494 NSLFFHYA 501 (501)
Q Consensus 494 ~~~~i~~~ 501 (501)
+.++||+.
T Consensus 421 ~~i~iW~~ 428 (435)
T 4e54_B 421 YHILIWSQ 428 (435)
T ss_dssp SEEEECCC
T ss_pred CcEEEEEC
Confidence 78888863
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=296.25 Aligned_cols=323 Identities=13% Similarity=0.101 Sum_probs=256.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.++|.+++|+|||+++|++..++.+.+|..... .......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~h~-------- 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH---------------------------ARQINTLNHG-------- 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE---------------------------EEEEEEECCS--------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCc---------------------------cccceeccCC--------
Confidence 35788999999999999999887776655543321 1123334788
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|+ ++++++++++ |+.|++|++.++......
T Consensus 52 ----~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~~~~~~~------------------------------------ 88 (337)
T 1gxr_A 52 ----EVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHPGNKSPV------------------------------------ 88 (337)
T ss_dssp ----SCCCEEEEC--SSSSEEEEEC-BSEEEEEETTSTTCCSCS------------------------------------
T ss_pred ----CceEEEEEe--cCCcEEEEcC-CCeEEEEECCCCCceeee------------------------------------
Confidence 889999998 7899999998 999999999876522111
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.... ...|...|.+++|+|++++|+++ .|+.|++||++........ .+..|..
T Consensus 89 ------------------~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------~~~~~~~ 142 (337)
T 1gxr_A 89 ------------------SQLD--CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA------ELTSSAP 142 (337)
T ss_dssp ------------------EEEE--CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE------EEECSSS
T ss_pred ------------------eccc--ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee------ecccCCC
Confidence 0000 13788999999999999999999 9999999999854422211 2567888
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.||.|++||+++++.. ..+. +|...+.+++|+|++++|++++ +
T Consensus 143 ~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 143 ACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQFQ-------------GHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCcee----eeee-------------cccCceEEEEECCCCCEEEEEecC
Confidence 99999999998 99999999999999999887543 2332 3678899999999999999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||+++ ++.+..+. +...+ .+++|+|++++|++++.||.|++||+.+++ ...+..|.
T Consensus 205 g~i~~~d~~~-~~~~~~~~-~~~~v---------------~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~ 265 (337)
T 1gxr_A 205 NTVRSWDLRE-GRQLQQHD-FTSQI---------------FSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHE 265 (337)
T ss_dssp SEEEEEETTT-TEEEEEEE-CSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCS
T ss_pred CcEEEEECCC-CceEeeec-CCCce---------------EEEEECCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCc
Confidence 9999999985 66666654 33322 789999999999999999999999998774 35788999
Q ss_pred CcccceeeccCCccccCccceeeeecccce-eeccccC-CcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 428 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 428 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
..+..++++| ++++ |++++.++. .+|+... .......+...|.+++|+|++++|++++.|+ +++|+
T Consensus 266 ~~v~~~~~~~--~~~~-----l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 266 SCVLSLKFAY--CGKW-----FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp SCEEEEEECT--TSSE-----EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cceeEEEECC--CCCE-----EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999998 6777 999999999 9995542 2223456888999999999999999998655 99996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=290.46 Aligned_cols=292 Identities=13% Similarity=0.135 Sum_probs=220.4
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.+....+++|. +.|++++|+ ++ +|++++.|++|++|++..+.....
T Consensus 4 ~~~~~~~~~h~------------~~v~~~~~s--~~--~las~~~D~~i~lw~~~~~~~~~~------------------ 49 (330)
T 2hes_X 4 INLIKSLKLYK------------EKIWSFDFS--QG--ILATGSTDRKIKLVSVKYDDFTLI------------------ 49 (330)
T ss_dssp CEEEEEEECCS------------SCEEEEEEE--TT--EEEEEESSSCEEEEECSSSCCEEE------------------
T ss_pred cccceeeccCC------------CceeeeccC--CC--EEEEEcCCCEEEEEEecCCCeEEE------------------
Confidence 44667889999 899999997 44 999999999999999986532111
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEee-cCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (501)
..+ ..+|...|.+++|+|++++|++| .|++|++||++.
T Consensus 50 ----------------------------------------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 50 ----------------------------------------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp ----------------------------------------EEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred ----------------------------------------EEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 111 03489999999999999999999 999999999863
Q ss_pred CC------eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 249 SD------QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 249 ~~------~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.. .... .+.+|...|.+++|+|++ ++|++++.|+.|++||++...........
T Consensus 90 ~~~~~~~~~~~~-------~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~------------- 148 (330)
T 2hes_X 90 SADRTFEMDLLA-------IIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISV------------- 148 (330)
T ss_dssp -----CCCEEEE-------EEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEE-------------
T ss_pred CcCccccceeEE-------EEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEE-------------
Confidence 21 2222 267899999999999999 99999999999999999543211111122
Q ss_pred eeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCC--Cc
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GL 397 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~ 397 (501)
+.+|...|.+++|+|++++|++++ |++|++||... + +++..+.+|...+ .+++|+|+ +.
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~~ 212 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTV---------------WSSDFDKTEGVF 212 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCE---------------EEEEECCSSSSC
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCcE---------------EEEEecCCCCee
Confidence 345788999999999999999986 69999999975 4 5677888888765 79999998 77
Q ss_pred EEEEEeCCCeEEEEecCCCCc-------ceEEEec-ccCcccceeeccCCccccCccceeeeecccce-eeccccCC---
Q 010801 398 HFATGSYSNLLRIFSHGVGSA-------GGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--- 465 (501)
Q Consensus 398 ~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~--- 465 (501)
+|++|+.|++|++||+..+.. ....+.. |...|.++++++ ++ + |++++.|+. ++|+....
T Consensus 213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~-~-----l~s~~~dg~v~iw~~~~~~~~ 284 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NG-L-----IASVGADGVLAVYEEVDGEWK 284 (330)
T ss_dssp EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT--TS-C-----EEEEETTSCEEEEEEETTEEE
T ss_pred EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC--CC-E-----EEEEeCCCEEEEEEcCCCceE
Confidence 999999999999999875421 1233444 899999999985 33 5 899999999 99955421
Q ss_pred -c-ccccccCC-CeEEEEEcc--CCCEEEEeeCCe-EEEEeC
Q 010801 466 -H-ELSYNLSS-KLLHLAWHP--TTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 466 -~-~~~~~~~~-~i~~~~~sp--~~~~la~~~~~~-~~i~~~ 501 (501)
. .....|.. .|++++|+| ++++||+++.|+ +++|+.
T Consensus 285 ~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 285 VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred EEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 1 12346766 899999999 689999998655 999973
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=317.30 Aligned_cols=307 Identities=14% Similarity=0.191 Sum_probs=232.3
Q ss_pred ccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|.+.|++++|+|++ ++|++|+.||+|+||++.+.... .......+.+|.
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~------- 430 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS------- 430 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS-------
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC-------
Confidence 699999999999864 79999999999999998865431 223456788999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ +++++|++|+.|++|++||+.+++.....
T Consensus 431 -----~~v~~v~~s--~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~----------------------------------- 468 (694)
T 3dm0_A 431 -----HFVEDVVLS--SDGQFALSGSWDGELRLWDLAAGVSTRRF----------------------------------- 468 (694)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CcEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCcceeEE-----------------------------------
Confidence 899999998 89999999999999999999887644322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...|.+++|+|++++|++| .|++|++||.. ....... .....+|.
T Consensus 469 --------------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~----~~~~~~h~ 517 (694)
T 3dm0_A 469 --------------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTI----SEGGEGHR 517 (694)
T ss_dssp --------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE----CSSTTSCS
T ss_pred --------------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceee----ccCCCCCC
Confidence 6899999999999999999999 99999999987 3332222 11246788
Q ss_pred cceEEEEEecCC-CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
..|.+++|+|++ ...|++++.|+.|++||+++++.. ..+ .+|...|.+++|+|++++|++++
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~----~~~-------------~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR----STL-------------AGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE----EEE-------------cCCCCCEEEEEEeCCCCEEEEEe
Confidence 999999999986 248999999999999999876532 223 44788999999999999999986
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|+.|++||+++ ++.+..+..+.. + .+++|+|++.+|++++ |+.|+|||+.++.. ...+..
T Consensus 581 ~Dg~i~iwd~~~-~~~~~~~~~~~~-v---------------~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~-~~~~~~ 641 (694)
T 3dm0_A 581 KDGVVLLWDLAE-GKKLYSLEANSV-I---------------HALCFSPNRYWLCAAT-EHGIKIWDLESKSI-VEDLKV 641 (694)
T ss_dssp TTSBCEEEETTT-TEEEECCBCSSC-E---------------EEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEECC
T ss_pred CCCeEEEEECCC-CceEEEecCCCc-E---------------EEEEEcCCCcEEEEEc-CCCEEEEECCCCCC-hhhhcc
Confidence 69999999986 776666654332 2 7899999999888766 46699999998733 344443
Q ss_pred ccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEeC
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~~ 501 (501)
+........... + ......+.-.+++++|+|+|++|++|+.|+ ++||+.
T Consensus 642 ~~~~~~~~~~~~---~------------------------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 642 DLKAEAEKADNS---G------------------------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp CCC-------------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cccccccccccc---c------------------------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 322110000000 0 000011122578999999999999999655 999973
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=284.74 Aligned_cols=257 Identities=15% Similarity=0.222 Sum_probs=200.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+....+.+|.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~------- 53 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE------- 53 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCS-------
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEcccc-------
Confidence 3689999999999999999999999999999987542 12447789999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|++..++++|++++.|++|++||+.+++....
T Consensus 54 -----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------ 92 (297)
T 2pm7_B 54 -----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI------------------------------------ 92 (297)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC------------------------------------
T ss_pred -----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE------------------------------------
Confidence 899999998433588999999999999999987642211
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ .+|...|.+++|+|+ +.+|++| .|+.|++||++........ .+.+
T Consensus 93 ----------------------~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~------~~~~ 143 (297)
T 2pm7_B 93 ----------------------AVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI------IIDA 143 (297)
T ss_dssp ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE------EEEC
T ss_pred ----------------------EEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee------eeec
Confidence 111 578899999999997 8899999 9999999999844322111 2567
Q ss_pred cccceEEEEEecCC------------CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEE
Q 010801 266 LTEVITSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 266 ~~~~v~~v~~~p~~------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
|...|.+++|+|++ .++|++|+.|+.|++||++++........ .+.+|...|.++
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~-------------~l~~H~~~V~~v 210 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------------TLEGHSDWVRDV 210 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE-------------EECCCSSCEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE-------------EecCCCCceEEE
Confidence 99999999999972 16999999999999999987542110111 235688999999
Q ss_pred EEeeCC---CEEEEEc-CCcEEEEEeeCCCCc--eeEe--eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 334 KFANDG---QHLLSRD-YMNLKLWDIRMDSTP--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 334 ~~sp~~---~~l~~~~-~~~i~lwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
+|+|++ ++|++++ |++|++||++..... ...+ ..|...+ .+++|+|++++||+++.|
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGGD 275 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE---------------EEEEECSSSCCEEEEETT
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE---------------EEEEECCCCCEEEEEcCC
Confidence 999985 7899886 699999999752211 1122 2233322 789999999999999999
Q ss_pred CeEEEEecCC
Q 010801 406 NLLRIFSHGV 415 (501)
Q Consensus 406 g~i~iwd~~~ 415 (501)
|.|+||+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999863
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=288.38 Aligned_cols=327 Identities=13% Similarity=0.127 Sum_probs=239.2
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|.++|++++|+|+|++||+|+.||.|+|||+.+++ .+....+.+|.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~--------- 52 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN--------- 52 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS---------
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCC---------
Confidence 78999999999999999999999999999998763 23457788898
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++......
T Consensus 53 ---~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------------------------ 91 (372)
T 1k8k_C 53 ---GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTLV------------------------------------ 91 (372)
T ss_dssp ---SCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEEE------------------------------------
T ss_pred ---CcccEEEEe--CCCCEEEEEcCCCeEEEEECCCCeeeeeEE------------------------------------
Confidence 899999998 789999999999999999998776433221
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee--eeeeecCCCCCCCcc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDDLT 267 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~ 267 (501)
...|...|.+++|+|++++|+++ .|+.|++||++..... ... ....|.
T Consensus 92 -----------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~ 142 (372)
T 1k8k_C 92 -----------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH------IKKPIR 142 (372)
T ss_dssp -----------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE------ECTTCC
T ss_pred -----------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee------eecccC
Confidence 15788899999999999999999 9999999999854421 121 146688
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc-eeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
..|.+++|+|++ ++|++++.||.|++||++.......... .+............+.+|...|.+++|+|++++|++++
T Consensus 143 ~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 143 STVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999999998 9999999999999999864322110000 00000000011122446788999999999999999886
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC--CCcc-eEE
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV--GSAG-GIT 422 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~-~~~ 422 (501)
|+.|++||+++ ++++..+..|...+ .+++|+|++++|++| .|+.|++|++.+ +... ...
T Consensus 222 ~d~~i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 222 HDSTVCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp TTTEEEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCC
T ss_pred CCCEEEEEECCC-CceeEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeec
Confidence 59999999986 88888898887654 789999999988888 999999999987 4211 011
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eec---cccCCc-------ccc-cccCCCeEEEEEc-cCC---C
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHH-------ELS-YNLSSKLLHLAWH-PTT---N 486 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw---~~~~~~-------~~~-~~~~~~i~~~~~s-p~~---~ 486 (501)
+..+... ....... .+| ...... ... .+|...|++++|+ ++| +
T Consensus 285 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 285 LDVPKQS---------------------SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 343 (372)
T ss_dssp CCCC-----------------------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred cCccccc---------------------hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence 1111000 0000111 223 111111 222 4889999999977 666 8
Q ss_pred EEEEeeCCe-EEEEe
Q 010801 487 LIACANGNS-LFFHY 500 (501)
Q Consensus 487 ~la~~~~~~-~~i~~ 500 (501)
+|++++.|+ +++|+
T Consensus 344 ~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 344 QFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred eEEEecCCCceEEEE
Confidence 999999554 99996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=293.29 Aligned_cols=300 Identities=16% Similarity=0.164 Sum_probs=226.4
Q ss_pred cccccceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ......+|.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~------ 118 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG------ 118 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT------
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC------
Confidence 3589999999999999 99999999999999999877542 223345788
Q ss_pred cccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.+++|+ | ++.+|++++.|+.|++||+.+........
T Consensus 119 ------~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------------------- 158 (383)
T 3ei3_B 119 ------DAITGMKFN--QFNTNQLFVSSIRGATTLRDFSGSVIQVFAK-------------------------------- 158 (383)
T ss_dssp ------CBEEEEEEE--TTEEEEEEEEETTTEEEEEETTSCEEEEEEC--------------------------------
T ss_pred ------CceeEEEeC--CCCCCEEEEEeCCCEEEEEECCCCceEEEec--------------------------------
Confidence 899999998 6 67899999999999999998643322210
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
. ..|...|.+++|+|++++|++| .|+.|++||++ .. .+.. +.+
T Consensus 159 --------------------------~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~-------~~~ 202 (383)
T 3ei3_B 159 --------------------------T-DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFK-------EKL 202 (383)
T ss_dssp --------------------------C-CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEE-------EEC
T ss_pred --------------------------c-CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEE-------ecc
Confidence 0 3566889999999999999999 99999999996 43 3332 567
Q ss_pred cccceEEEEEecCCCc-EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEE
Q 010801 266 LTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL 343 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~ 343 (501)
|...|.+++|+|++ + +|++++.|+.|++||+++.+........ .+|...|.+++|+| ++++|+
T Consensus 203 h~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 203 HKAKVTHAEFNPRC-DWLMATSSVDATVKLWDLRNIKDKNSYIAE--------------MPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp SSSCEEEEEECSSC-TTEEEEEETTSEEEEEEGGGCCSTTCEEEE--------------EECSSCEEEEEECTTTSCEEE
T ss_pred CCCcEEEEEECCCC-CCEEEEEeCCCEEEEEeCCCCCcccceEEE--------------ecCCCceEEEEEcCCCCCEEE
Confidence 99999999999999 6 9999999999999999975322111111 23678999999999 999999
Q ss_pred EEc-CCcEEEEEeeCCCCceeEeecccccccc-----ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK-----LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 344 ~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+++ |+.|++||+++ ++....+.+|...... ...+.... .+..++|+|++++ +|+.||.|+|||+.+++
T Consensus 268 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMY---DLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSS---SEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred EEcCCCcEEEEECCC-CccccccccccccccccccceEEeccCCC---CceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 886 59999999986 6666777666432110 00000011 1135677777776 77899999999999874
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEE
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 497 (501)
.+ ..+.++. +...+..++|+|++++||+++++.++
T Consensus 342 ~~-~~l~~~~--------------------------------------------~~~~~~~~~~s~~g~~l~s~sd~~i~ 376 (383)
T 3ei3_B 342 LV-HQLRDPN--------------------------------------------AAGIISLNKFSPTGDVLASGMGFNIL 376 (383)
T ss_dssp EE-EEECBTT--------------------------------------------BCSCCCEEEECTTSSEEEEEETTEEE
T ss_pred ee-eeecCCC--------------------------------------------CCceEEEEEEecCccEEEEecCCcEE
Confidence 42 3333221 12255677999999999999888899
Q ss_pred EEeC
Q 010801 498 FHYA 501 (501)
Q Consensus 498 i~~~ 501 (501)
+|+.
T Consensus 377 iw~~ 380 (383)
T 3ei3_B 377 IWNR 380 (383)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9973
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=314.91 Aligned_cols=398 Identities=10% Similarity=0.064 Sum_probs=251.6
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+.|...|++++|+| |++||+++.|++|+|||+.+++. +..+. |.
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~---------------------------~~~~~-~~------- 98 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV---------------------------LTTVF-VP------- 98 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE---------------------------EEEEE-CS-------
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE---------------------------EEEEc-CC-------
Confidence 35788999999999 88999999999999999987653 23343 55
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC-ccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 187 (501)
+.|++++|+ |++++|++|+.||+|++||+.++++............ .....+.+.+..+.+++.. ..++.
T Consensus 99 -----~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~--~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 99 -----GKITSIDTD--ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSS--FFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp -----SCEEEEECC--TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHH--TCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred -----CCEEEEEEC--CCCCEEEEEcCCCcEEEEECCCCccccceeccccccc--cccccCCCCeEEEEEccCCCCEEEE
Confidence 779999998 8999999999999999999998775322100000000 0001123445555665542 34444
Q ss_pred ceeccCcceEEEeccCceeeeeeEeec-----------------CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYP-----------------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~-----------------~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
+. .++.+ +||+... ++.+.+. ..|...|++++|+|+|++|++| .|+.|++||++++
T Consensus 170 g~--~dg~v-lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 170 SY--EYVTL-TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EC--SSCEE-EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred Ee--CCCcE-EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 43 37889 9999874 3344331 1245789999999999999999 9999999999743
Q ss_pred CeeeeeeecCCCCCC-----------CcccceEEEEEec----CCCcEEEEE----------------------------
Q 010801 250 DQCFNIVDMKPSNMD-----------DLTEVITSAEFHP----IYCNLLAYS---------------------------- 286 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~-----------~~~~~v~~v~~~p----~~~~~l~~~---------------------------- 286 (501)
. .+....+...... .|...|.+++|++ ++..+|++|
T Consensus 244 ~-~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 244 H-MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp C-EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred c-EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 3 2221000000000 1223344444432 110222222
Q ss_pred ------------------------------------------------eCCCeEEEEEccCCccccc-------------
Q 010801 287 ------------------------------------------------SSRGFVRLVDMRQSALCDH------------- 305 (501)
Q Consensus 287 ------------------------------------------------~~dg~i~~wd~~~~~~~~~------------- 305 (501)
+.||.|++||+.++.....
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 2233344444332211000
Q ss_pred -------------------------------------------------------ccceeecccccCCCccee-------
Q 010801 306 -------------------------------------------------------SARILRDAAESHGSKSFF------- 323 (501)
Q Consensus 306 -------------------------------------------------------~~~~~~~~~~~~~~~~~~------- 323 (501)
.+++|+...........+
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 000000000000000001
Q ss_pred --eecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCC----------------------------------------
Q 010801 324 --TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST---------------------------------------- 360 (501)
Q Consensus 324 --~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~---------------------------------------- 360 (501)
.+|...|.+++|+|||++||+|+ |++|+|||+.+ ++
T Consensus 483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 16788999999999999999986 59999999985 32
Q ss_pred -----ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE----EEe-cccCcc
Q 010801 361 -----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI----TVE-AGKNEN 430 (501)
Q Consensus 361 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~-~~~~~v 430 (501)
++..+.+|...+ ++++|+||| +||+|+.|++|+|||++++..+.. .+. +|...|
T Consensus 562 ~~g~~~~~~l~~h~~~V---------------~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKT---------------SAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV 625 (902)
T ss_dssp SEEEEEEEEECCCSCSE---------------EEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred CCccceeEEEEcCCCcE---------------EEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence 244455555544 899999999 999999999999999976633211 232 889999
Q ss_pred cceeec-----cC-CccccCccceeeeecccce-eeccc-----cCCccccccc-----CCCeEEEE-Ec----------
Q 010801 431 RKPILQ-----AA-PRARRSSLSNLTRGLYRQA-HENSS-----SGHHELSYNL-----SSKLLHLA-WH---------- 482 (501)
Q Consensus 431 ~~~~~~-----~~-~~~~~~~~~~l~~~~~~~~-~iw~~-----~~~~~~~~~~-----~~~i~~~~-~s---------- 482 (501)
++++|+ |. .+++. |++|+.|+. ++|+. ++......+| ..+|..++ |+
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~-----l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~ 700 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSIL-----MVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLAT 700 (902)
T ss_dssp EEEEEEEEECTTSSSEEEE-----EEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCB
T ss_pred EEEEEEEEecCCCCCcceE-----EEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCC
Confidence 999999 74 23577 999999999 99964 2222333333 46777776 76
Q ss_pred ------------cCCCEEEEeeCCeEEEEeC
Q 010801 483 ------------PTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 483 ------------p~~~~la~~~~~~~~i~~~ 501 (501)
+++..||+ +++.++||+.
T Consensus 701 ~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~ 730 (902)
T 2oaj_A 701 IPKMQNLSKGLCIPGIVLIT-GFDDIRLITL 730 (902)
T ss_dssp HHHHHGGGGTCCCCEEEEEE-CSSEEEEECT
T ss_pred HHHHhccCCCCCCCeEEEEE-eccceEEEeC
Confidence 44544444 4888999973
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=287.80 Aligned_cols=249 Identities=18% Similarity=0.253 Sum_probs=194.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|...|++++|+|++.+| +++.||+|+|||+.+++.. ........+|.
T Consensus 91 ~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~------- 139 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD------- 139 (357)
T ss_dssp EECSSCEEEEEEETTTEEE-EEETTSCEEEC-------------------------------CCCCEEECCCS-------
T ss_pred CCCCCCEEEEEEcCCCCEE-EEECCCEEEEeecccccee-----------------------EEEeeccCCCC-------
Confidence 4688999999999998755 5678999999999887542 11112345788
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|+ |++++|++++.|++|++||+.+++.....
T Consensus 140 -----~~V~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~~~~~~~----------------------------------- 177 (357)
T 4g56_B 140 -----DIVKTLSVF--SDGTQAVSGGKDFSVKVWDLSQKAVLKSY----------------------------------- 177 (357)
T ss_dssp -----SCEEEEEEC--SSSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 889999998 79999999999999999999987754432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|++++|++++. +++++ .|+.|++||+++....... ....+
T Consensus 178 --------------------------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~------~~~~~ 225 (357)
T 4g56_B 178 --------------------------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI------DFCAS 225 (357)
T ss_dssp --------------------------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC------CCTTC
T ss_pred --------------------------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee------eeccc
Confidence 68999999999999875 67777 9999999999854433221 24567
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEE
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~ 345 (501)
...+.+++|+|++..+|++|+.|+.|++||+++++.. +.+. +|...|.+++|+|++ ++|+++
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~-------------~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSA-------------VHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEEC-------------CCSSCEEEEEECSSSSCCEEEE
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEe----EEEe-------------ccceeEEEEEEcCCCCCEEEEE
Confidence 7889999999987589999999999999999987543 3333 367899999999987 578887
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCCC
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+ |++|+|||+++ ++.+.. .+|...+ ++++|+| ++++|++++.||+|++|++...
T Consensus 289 s~D~~i~iwd~~~-~~~~~~-~~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 289 SEDCTVAVLDADF-SEVFRD-LSHRDFV---------------TGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ETTSCEEEECTTS-CEEEEE-CCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred eCCCEEEEEECCC-CcEeEE-CCCCCCE---------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 5 69999999985 665544 4677655 7999998 7999999999999999999764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=278.78 Aligned_cols=284 Identities=13% Similarity=0.177 Sum_probs=231.2
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++|++++ ||.|++|++.+++.. .........+|.
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~~------- 97 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD------- 97 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT-------
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce----------------------eeeecccccCCC-------
Confidence 46899999999999999999998 999999999876532 001111222676
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++....
T Consensus 98 -----~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~------------------------------------ 134 (337)
T 1gxr_A 98 -----NYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIK------------------------------------ 134 (337)
T ss_dssp -----SBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEE------------------------------------
T ss_pred -----CcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCccee------------------------------------
Confidence 889999998 7899999999999999999987652221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..+ ..|...|.+++|+|++++++++ .|+.|++||++ ..+.... +..|.
T Consensus 135 ----------------------~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~-------~~~~~ 183 (337)
T 1gxr_A 135 ----------------------AEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGHT 183 (337)
T ss_dssp ----------------------EEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred ----------------------eec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeee-------eeccc
Confidence 111 5788899999999999999999 99999999999 4444443 56788
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..|.+++|+|++ ++|++++.||.|++||+++++.. ..+. |...+.+++|+|++++|++++
T Consensus 184 ~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 184 DGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD--------------FTSQIFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE--------------CSSCEEEEEECTTSSEEEEEET
T ss_pred CceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec--------------CCCceEEEEECCCCCEEEEEcC
Confidence 999999999998 99999999999999999987543 2222 356899999999999999886
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++.|++||++. .+ ...+..|...+ .+++|+|++++|++++.||.|++|++.+++.. ....|
T Consensus 245 ~~~i~~~~~~~-~~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~ 305 (337)
T 1gxr_A 245 SSNVEVLHVNK-PD-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKE 305 (337)
T ss_dssp TSCEEEEETTS-SC-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEEC
T ss_pred CCcEEEEECCC-CC-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EEecC
Confidence 59999999975 43 44566666554 79999999999999999999999999988544 44568
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
...+.+++++| ++++ |++++.|+. .+|+
T Consensus 306 ~~~v~~~~~s~--~~~~-----l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 306 SSSVLSCDISV--DDKY-----IVTGSGDKKATVYE 334 (337)
T ss_dssp SSCEEEEEECT--TSCE-----EEEEETTSCEEEEE
T ss_pred CCcEEEEEECC--CCCE-----EEEecCCCeEEEEE
Confidence 88999999998 6777 899999998 8884
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=280.26 Aligned_cols=249 Identities=18% Similarity=0.235 Sum_probs=201.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++|++|+.|++|+|||+.+++ ....+.+|.
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~---------------------------~~~~~~~h~-------- 107 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---------------------------TYQRFVGHK-------- 107 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC---------------------------eeEEEccCC--------
Confidence 589999999999999999999999999999998765 346788999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +++.+|++++.|++|++||+......
T Consensus 108 ----~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~~~~~--------------------------------------- 142 (319)
T 3frx_A 108 ----SDVMSVDID--KKASMIISGSRDKTIKVWTIKGQCLA--------------------------------------- 142 (319)
T ss_dssp ----SCEEEEEEC--TTSCEEEEEETTSCEEEEETTSCEEE---------------------------------------
T ss_pred ----CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCeEE---------------------------------------
Confidence 889999997 78999999999999999998643221
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC------CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.+ .+|...|.+++|+|. +..++++ .|+.|++||++. .+....
T Consensus 143 ----------------------~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~------- 191 (319)
T 3frx_A 143 ----------------------TL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEAD------- 191 (319)
T ss_dssp ----------------------EE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEE-------
T ss_pred ----------------------EE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhee-------
Confidence 11 588899999999885 4478888 999999999984 444332
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
+.+|...|.+++|+|++ ++|++++.||.|++||+++++.. ..+.. ...|.+++|+|++.+|
T Consensus 192 ~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 192 FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSA--------------QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------CSCEEEEEECSSSSEE
T ss_pred ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC--------------CCcEEEEEEcCCCCEE
Confidence 67899999999999999 99999999999999999987543 33332 3579999999999999
Q ss_pred EEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 343 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+++.++.+++|++.. ...+..+..+...... .+. ..+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 253 a~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~~----~~~---~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATATGIKVFSLDP-QYLVDDLRPEFAGYSK----AAE---PHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEETT-EEEEEEECCCCTTCCG----GGC---CCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCcEEEEeCc-CeeeeccCcccccccc----CcC---cceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999888899999974 5555554432111000 000 11268999999999999999999999998754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=295.33 Aligned_cols=261 Identities=12% Similarity=0.141 Sum_probs=194.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|.++|++++|+|+|++||+|+.||.|+|||+.++. ++....+.+|.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~--------- 55 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHD--------- 55 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCS---------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCC---------
Confidence 46789999999999999999999999999998762 12446788998
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|+ |++++|++++.|++|++||+.+++ ...
T Consensus 56 ---~~v~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~~~~~-------------------------------------- 92 (377)
T 3dwl_C 56 ---KIVTCVDWA--PKSNRIVTCSQDRNAYVYEKRPDGTWKQ-------------------------------------- 92 (377)
T ss_dssp ---SCEEEEEEC--TTTCCEEEEETTSSEEEC------CCCC--------------------------------------
T ss_pred ---ceEEEEEEe--CCCCEEEEEeCCCeEEEEEcCCCCceee--------------------------------------
Confidence 899999998 789999999999999999998765 111
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe--eeeeeecCCCCCCC-
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD- 265 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~- 265 (501)
...+ .+|...|.+++|+|++++|++| .|+.|++||++.... .... +..
T Consensus 93 --------------------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~ 144 (377)
T 3dwl_C 93 --------------------TLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH-------LKRP 144 (377)
T ss_dssp --------------------EEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE-------ECSS
T ss_pred --------------------eeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE-------eecc
Confidence 1111 5789999999999999999999 999999999984432 2332 445
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc-ccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
|...|.+++|+|++ ++|++++.|+.|++||++................ ........+ +|...|.+++|+|++++|++
T Consensus 145 h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 145 LRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp CCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred cCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 89999999999998 9999999999999999976542211000000000 000011122 68899999999999999998
Q ss_pred Ec-CCcEEEEEeeCCCCc----eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 345 RD-YMNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
++ |+.|++||+++ ++. +..+.+|...+ .+++|+|++++|++|+.++.+ +|+...
T Consensus 223 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 223 AGHDSSVTIAYPSA-PEQPPRALITVKLSQLPL---------------RSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EETTTEEC-CEECS-TTSCEEECCCEECSSSCE---------------EEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EeCCCcEEEEECCC-CCCcceeeEeecCCCCce---------------EEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 86 59999999986 655 67788887765 799999999999999877766 666553
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=282.26 Aligned_cols=268 Identities=17% Similarity=0.233 Sum_probs=203.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++||+|+.|++|+||++.++. ......+.+|.
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-------------------------~~~~~~~~~h~-------- 105 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-------------------------FECVTTLEGHE-------- 105 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------------------------EEEEEEECCCS--------
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------------------------eEEEEEccCCC--------
Confidence 589999999999999999999999999999987652 34567889999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++|+ |++++|++++.|++|++||+.++...
T Consensus 106 ----~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~--------------------------------------- 140 (345)
T 3fm0_A 106 ----NEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEY--------------------------------------- 140 (345)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCE---------------------------------------
T ss_pred ----CCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCe---------------------------------------
Confidence 889999998 78999999999999999999765421
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe-eeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~ 267 (501)
.+...+ .+|...|.+++|+|++++|++| .|+.|++||.+.... +.. .+.+|.
T Consensus 141 ------------------~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~-------~~~~h~ 194 (345)
T 3fm0_A 141 ------------------ECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA-------TLEGHE 194 (345)
T ss_dssp ------------------EEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE-------EECCCS
T ss_pred ------------------EEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE-------EecCCC
Confidence 122222 6899999999999999999999 999999999984332 222 267899
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee-cccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~l~~~~ 346 (501)
..|.+++|+|++ ++|++++.|++|++||.......... ..... .........+.+ |...|.+++|+|++..|++++
T Consensus 195 ~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 195 STVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGV-ACSGS-DPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCC-CCC----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccc-eeecc-CCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 999999999999 99999999999999997543221100 00000 000000011222 778999999999999999885
Q ss_pred -CCcEEEEEeeCCCC---ceeE-----eeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCC
Q 010801 347 -YMNLKLWDIRMDST---PVAT-----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 -~~~i~lwd~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.|++|+...... +... ..+|...+ ++++|+|++ .+||+|+.||+|++|++.++
T Consensus 272 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V---------------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 272 GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV---------------NCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE---------------eEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 69999999874221 1111 23455443 799999997 59999999999999999887
Q ss_pred Ccc
Q 010801 417 SAG 419 (501)
Q Consensus 417 ~~~ 419 (501)
+.+
T Consensus 337 ~~~ 339 (345)
T 3fm0_A 337 EGL 339 (345)
T ss_dssp ---
T ss_pred CCc
Confidence 543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=284.21 Aligned_cols=257 Identities=15% Similarity=0.186 Sum_probs=198.6
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.|++|+|||+.+++. .....+.+|.
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~------- 57 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE------- 57 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence 36999999999999999999999999999999986532 2456789999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|++..++++|++++.|++|++||+++++....
T Consensus 58 -----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------ 96 (316)
T 3bg1_A 58 -----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS------------------------------------ 96 (316)
T ss_dssp -----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE------------------------------------
T ss_pred -----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE------------------------------------
Confidence 899999997423588999999999999999987642211
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ .+|...|.+++|+|+ +.+|++| .|+.|++||++...... . ...+.+
T Consensus 97 ----------------------~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-~----~~~~~~ 148 (316)
T 3bg1_A 97 ----------------------HEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-V----KKINNA 148 (316)
T ss_dssp ----------------------EEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE-E----CCBTTS
T ss_pred ----------------------EEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc-e----eeeecc
Confidence 112 689999999999998 7899999 99999999998443221 0 013678
Q ss_pred cccceEEEEEecCC----------------CcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 266 LTEVITSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 266 ~~~~v~~v~~~p~~----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
|...|.+++|+|+. .++|++++.|+.|++||++..... +.. ..+.+|...
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----~~~----------~~l~~h~~~ 214 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----KEE----------QKLEAHSDW 214 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE----EEE----------ECCBCCSSC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc----cee----------eecccCCCc
Confidence 99999999999972 168999999999999999754210 011 113457889
Q ss_pred eeEEEEeeCC----CEEEEEc-CCcEEEEEeeCCC---CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 330 ISDIKFANDG----QHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 330 i~~~~~sp~~----~~l~~~~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
|.+++|+|++ ++|++++ |++|++||++... .....+..|...+ ++++|+|++++|++
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las 279 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAV 279 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEE
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEE
Confidence 9999999986 7899885 6999999987411 1223445555543 79999999999999
Q ss_pred EeCCCeEEEEecCC
Q 010801 402 GSYSNLLRIFSHGV 415 (501)
Q Consensus 402 ~~~dg~i~iwd~~~ 415 (501)
++.||.|+||+...
T Consensus 280 ~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 280 SGGDNKVTLWKESV 293 (316)
T ss_dssp EESSSCEEEEEECT
T ss_pred EcCCCeEEEEEECC
Confidence 99999999999863
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=282.35 Aligned_cols=289 Identities=12% Similarity=0.127 Sum_probs=238.0
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~------- 74 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------RLGTLDGHT------- 74 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------EEEEECCCS-------
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------hhhhhhhcC-------
Confidence 3599999999999999999999999999999988765 346788898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ +++++|++++.|+.|++||+.+++.....
T Consensus 75 -----~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------- 112 (369)
T 3zwl_B 75 -----GTIWSIDVD--CFTKYCVTGSADYSIKLWDVSNGQCVATW----------------------------------- 112 (369)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEE-----------------------------------
T ss_pred -----CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEe-----------------------------------
Confidence 889999998 78999999999999999999987754432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC-----CeEEEEECCCCCeeeeeeecCC--
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKP-- 260 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~-- 260 (501)
.+...+.+++|+|+++.++++ .+ +.|++||+..............
T Consensus 113 ---------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 113 ---------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp ---------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred ---------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 266789999999999999998 88 9999999985432211111100
Q ss_pred -CCCCCccc--ceEEEEEecCCCcEEEEEeCCCeEEEEEccCC-cccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 261 -SNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 261 -~~~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
..+..|.. .+.+++|+|++ ++|++++.||.|++||+++. ... ..+ ..|...|.+++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~~-------------~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----DSI-------------DLHEKSISDMQFS 227 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----EEE-------------ECCSSCEEEEEEC
T ss_pred eeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----EEE-------------ecCCCceeEEEEC
Confidence 11334444 89999999999 99999999999999999873 222 233 3367899999999
Q ss_pred eCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---------
Q 010801 337 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--------- 406 (501)
Q Consensus 337 p~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--------- 406 (501)
|++++|++++ ++.|++||+++ ++.+..+.. ...+ ..++|+|+++++++++.++
T Consensus 228 ~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~-~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 228 PDLTYFITSSRDTNSFLVDVST-LQVLKKYET-DCPL---------------NTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp TTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-SSCE---------------EEEEECSSSSEEEEEECCC---------
T ss_pred CCCCEEEEecCCceEEEEECCC-CceeeeecC-CCCc---------------eeEEecCCCceEEEeecCCCceEEEEec
Confidence 9999999886 59999999986 777777763 3322 6899999999999999988
Q ss_pred -----eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 407 -----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 407 -----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.+++||+.+++ ....+.+|...|.+++++| ++++ |++++.|+. .+|+..
T Consensus 291 ~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~--~~~~-----l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 291 NEGKFEARFYHKIFEE-EIGRVQGHFGPLNTVAISP--QGTS-----YASGGEDGFIRLHHFE 345 (369)
T ss_dssp ----CEEEEEETTTCC-EEEEEECCSSCEEEEEECT--TSSE-----EEEEETTSEEEEEEEC
T ss_pred CCCcceeEEEecCCCc-chhheecccCcEEEEEECC--CCCE-----EEEEcCCCeEEEEECc
Confidence 89999999884 4588899999999999999 7777 999999999 999554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=289.64 Aligned_cols=306 Identities=14% Similarity=0.214 Sum_probs=247.3
Q ss_pred cccccce-EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v-~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|.+.| ++ ++++|++||+|+.||+|++||+.+++. ...+.+|.
T Consensus 115 ~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~---------------------------~~~~~~h~------ 159 (445)
T 2ovr_B 115 KGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------------LRTLVGHT------ 159 (445)
T ss_dssp ECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCE---------------------------EEECCCCS------
T ss_pred cccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcE---------------------------EEEEcCCC------
Confidence 3587765 54 555799999999999999999987653 47788999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++|+ ++.+++++.||+|++||+.+++.....
T Consensus 160 ------~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~---------------------------------- 195 (445)
T 2ovr_B 160 ------GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHTL---------------------------------- 195 (445)
T ss_dssp ------SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEEE----------------------------------
T ss_pred ------CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEEE----------------------------------
Confidence 899999996 469999999999999999987654432
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+|...|.+++|+ ++.+++| .|+.|++||+.. ++.... +.+|
T Consensus 196 ---------------------------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~~~~~~-------~~~~ 238 (445)
T 2ovr_B 196 ---------------------------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLHV-------LMGH 238 (445)
T ss_dssp ---------------------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEEE-------EECC
T ss_pred ---------------------------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-CcEEEE-------EcCC
Confidence 6888999999995 5678888 999999999994 444443 5678
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
...|.+++| ++ +++++++.||.|++||+++++.. ..+ .+|...|.++.| +++++++++
T Consensus 239 ~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~----~~~-------------~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 239 VAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCL----HTL-------------QGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp SSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEE----EEE-------------CCCSSCEEEEEE--CSSEEEEEE
T ss_pred cccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEe----EEe-------------cCCCCceEEEEE--CCCEEEEEe
Confidence 999999999 56 78999999999999999887543 233 336778999998 788899885
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|+.|++||+++ ++.+..+.+|...+ .++.+ ++++|++|+.||.|++||+.+++. ...+..
T Consensus 297 ~d~~i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~ 357 (445)
T 2ovr_B 297 LDTSIRVWDVET-GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTGQC-LQTLQG 357 (445)
T ss_dssp TTSCEEEEETTT-CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECS
T ss_pred CCCeEEEEECCC-CCEEEEEcCCcccE---------------EEEEE--eCCEEEEEeCCCeEEEEECCCCcE-EEEEcc
Confidence 69999999986 88888888887654 45555 577999999999999999998854 467765
Q ss_pred ---ccCcccceeeccCCccccCccceeeeecccce-eecccc--CCcccc-----cccCCCeEEEEEccCCCEEEEeeCC
Q 010801 426 ---GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELS-----YNLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 426 ---~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~-----~~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
|...+.++.+.+ .+ +++|+.|+. .+|+.. +..... ..+...|.+++|+|++.+||+++.|
T Consensus 358 ~~~~~~~v~~~~~~~----~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 358 PNKHQSAVTCLQFNK----NF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp TTSCSSCEEEEEECS----SE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECC----CE-----EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 888899888853 45 899999999 999544 333333 3678899999999999999999977
Q ss_pred e-----EEEEe
Q 010801 495 S-----LFFHY 500 (501)
Q Consensus 495 ~-----~~i~~ 500 (501)
+ ++||+
T Consensus 429 g~~~~~l~v~d 439 (445)
T 2ovr_B 429 GTEETKLLVLD 439 (445)
T ss_dssp SSSCCEEEEEE
T ss_pred CCCccEEEEEE
Confidence 6 78875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=282.33 Aligned_cols=308 Identities=13% Similarity=0.174 Sum_probs=225.9
Q ss_pred ccccceEEEEEccC----CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec--cCCcc
Q 010801 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPE 103 (501)
Q Consensus 30 ~h~~~v~~v~~s~~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~ 103 (501)
.|.+.|++++|+|+ ...+++++.++.|+|||+.+++.. ..+..+. .|.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~------------------------~~~~~~~~~~~~-- 69 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI------------------------RLLQSYVDADAD-- 69 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE------------------------EEEEEEECSCTT--
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE------------------------EeeeeccccCCC--
Confidence 58999999999984 455666667889999999876542 1111111 244
Q ss_pred hhhccccccccceeEEEEeecCC--CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~--~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..|++++|+|+.. +.+|++++.||.|++||+.+++.....
T Consensus 70 ----------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---------------------------- 111 (366)
T 3k26_A 70 ----------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY---------------------------- 111 (366)
T ss_dssp ----------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE----------------------------
T ss_pred ----------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee----------------------------
Confidence 7899999995422 679999999999999999887644332
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
.+|...|.+++|+| ++.+|++| .|+.|++||++. ++....+
T Consensus 112 ---------------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~--- 154 (366)
T 3k26_A 112 ---------------------------------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIF--- 154 (366)
T ss_dssp ---------------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEEE---
T ss_pred ---------------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEEe---
Confidence 57899999999999 89999999 999999999994 4444431
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce--eec---------ccccCCCcceeeeccc
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI--LRD---------AAESHGSKSFFTEIIA 328 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~h~~ 328 (501)
..+..|...|.+++|+|++ ++|++++.||.|++||+++++........ +.. ............+|..
T Consensus 155 -~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 155 -GGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp -CSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred -cccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 1236799999999999998 99999999999999999987543110000 000 0000011122344889
Q ss_pred ceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCC-------------ceeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 329 SISDIKFANDGQHLLSRD-YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
.|.+++|+ +++|++++ ++.|++||+++... .+..+..|...+ ++++|+|
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~ 295 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSM 295 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEE
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcC
Confidence 99999999 77888885 59999999986222 255555565544 6899999
Q ss_pred C--CcEEEEEeCCCeEEEEecCCCCcce---EEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccc
Q 010801 395 D--GLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS 469 (501)
Q Consensus 395 ~--~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~ 469 (501)
+ +++|++|+.||.|++||+.+++... ..+..|
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------------------------------- 332 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH------------------------------------------- 332 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCT-------------------------------------------
T ss_pred CCCCcEEEEEecCCcEEEEECCCCCCccccceEEccc-------------------------------------------
Confidence 9 9999999999999999999874321 011111
Q ss_pred cccCCCeEEEEEccCCCEEEEeeCC-eEEEEeC
Q 010801 470 YNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 470 ~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~~ 501 (501)
.+...|++++|+|++++|++++.| .+++|+.
T Consensus 333 -~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 333 -KCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp -TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 124588999999999999999865 5999973
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=291.75 Aligned_cols=309 Identities=13% Similarity=0.171 Sum_probs=239.4
Q ss_pred CCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 26 ~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
...+.|...|++++|+|++++||+|+.||.|++|++.+... .......+.+|.
T Consensus 61 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~~~h~---- 113 (416)
T 2pm9_A 61 IASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------AINSMARFSNHS---- 113 (416)
T ss_dssp SCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------CCCEEEECCCSS----
T ss_pred EEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------cccchhhccCCc----
Confidence 34567899999999999999999999999999999986321 122557788898
Q ss_pred hccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 106 YLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|.+++|+ |+ +.+|++++.|+.|++||+.+++..... ..
T Consensus 114 --------~~v~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~---------------------------- 154 (416)
T 2pm9_A 114 --------SSVKTVKFN--AKQDNVLASGGNNGEIFIWDMNKCTESPSN-YT---------------------------- 154 (416)
T ss_dssp --------SCCCEEEEC--SSSTTBEEEECSSSCEEBCBTTTTSSCTTT-CC----------------------------
T ss_pred --------cceEEEEEc--CCCCCEEEEEcCCCeEEEEECCCCcccccc-cc----------------------------
Confidence 899999998 66 789999999999999999876511000 00
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
...... ...|...|.+++|+|+ +.+|+++ .|+.|++||++. .+....+... ..
T Consensus 155 ----------------------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~-~~ 209 (416)
T 2pm9_A 155 ----------------------PLTPGQ-SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-KKEVIHLSYT-SP 209 (416)
T ss_dssp ----------------------CBCCCC-SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-TEEEEEECCC-CC
T ss_pred ----------------------cccccc-ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-CCcceEEecc-cc
Confidence 000000 1578889999999999 7889998 999999999994 4444432111 11
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCC---eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-C
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-D 338 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~ 338 (501)
..+|...|.+++|+|++..+|++++.|+ .|++||++++.... ..+. .+|...|.+++|+| +
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---~~~~------------~~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---QTLN------------QGHQKGILSLDWCHQD 274 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS---BCCC------------SCCSSCEEEEEECSSC
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc---EEee------------cCccCceeEEEeCCCC
Confidence 2234789999999999757999999998 99999998863221 2222 04678999999999 8
Q ss_pred CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEEEEEeCCCeEEEEecCCC
Q 010801 339 GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 339 ~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 416 (501)
+++|++++ |+.|++||+++ ++++..+.+|...+ ++++|+|++ .+|++++.||.|++|++.+.
T Consensus 275 ~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 275 EHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 99999886 59999999986 88889999888765 789999998 89999999999999999876
Q ss_pred CcceEE----------------------------------EecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 417 SAGGIT----------------------------------VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 417 ~~~~~~----------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
...... ...|..++..++|+| +|++ |++++.|+. .+|+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~-----la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 339 TNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF--GGKL-----VQITPDGKGVSITN 411 (416)
T ss_dssp CCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET--TTEE-----ECBCTTSSCBCCBC
T ss_pred CCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee--CCeE-----EEEeCCCCeEEEEE
Confidence 433111 011667788999998 8888 999999999 9995
Q ss_pred cc
Q 010801 462 SS 463 (501)
Q Consensus 462 ~~ 463 (501)
..
T Consensus 412 ~~ 413 (416)
T 2pm9_A 412 PK 413 (416)
T ss_dssp CC
T ss_pred ec
Confidence 44
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=288.92 Aligned_cols=316 Identities=12% Similarity=0.211 Sum_probs=242.2
Q ss_pred cccccce-EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v-~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|.+.| +++.| ++++|++|+.||+|++||+.+++ ....+.+|.
T Consensus 118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~------ 162 (464)
T 3v7d_B 118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------ 162 (464)
T ss_dssp ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS------
T ss_pred cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCC------
Confidence 3577774 66666 57899999999999999988664 447788999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++|+ +++ .+++|+.||+|++||+.+++.....
T Consensus 163 ------~~V~~l~~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~---------------------------------- 199 (464)
T 3v7d_B 163 ------GGVWALKYA--HGG-ILVSGSTDRTVRVWDIKKGCCTHVF---------------------------------- 199 (464)
T ss_dssp ------SCEEEEEEC--STT-EEEEEETTSCEEEEETTTTEEEEEE----------------------------------
T ss_pred ------cCEEEEEEc--CCC-EEEEEeCCCCEEEEECCCCcEEEEE----------------------------------
Confidence 999999997 555 9999999999999999987644432
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEec--CCCCEEEEE-cCCeEEEEECCCCCeeeeeeec------
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDM------ 258 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------ 258 (501)
.+|...|.+++|+ +++.++++| .|+.|++||++...........
T Consensus 200 ---------------------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 200 ---------------------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp ---------------------------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred ---------------------------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 6889999999998 577899999 9999999999854322110000
Q ss_pred --C-------CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 259 --K-------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 259 --~-------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
. ...+.+|...+.++ ++++ +++++++.||.|++||+++++.. ..+ .+|...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~----~~~-------------~~~~~~ 312 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCL----YIL-------------SGHTDR 312 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEE----EEE-------------CCCSSC
T ss_pred eeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEe-------------cCCCCC
Confidence 0 00256788888877 5677 89999999999999999887543 233 346789
Q ss_pred eeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
|.+++|+|++++|++++ |+.|++||+++ ++++..+.+|...+ .+++|+ +++|++++.||.|
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~s~s~dg~v 374 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSI 374 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEC--SSEEEEEETTSEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcE---------------EEEEEc--CCEEEEEeCCCcE
Confidence 99999999999999986 59999999986 88899999888765 688886 5799999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCccc-ccccCCCeEEEEEccC
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHEL-SYNLSSKLLHLAWHPT 484 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~-~~~~~~~i~~~~~sp~ 484 (501)
++||+.++... ....+...+..+++++ ++.+ +++|+ ++. .+|+.. +.+.. ...+...|.+++|+ .
T Consensus 375 ~vwd~~~~~~~--~~~~~~~~~~~~~~~~--~~~~-----l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~ 443 (464)
T 3v7d_B 375 RGWDANDYSRK--FSYHHTNLSAITTFYV--SDNI-----LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-G 443 (464)
T ss_dssp EEEETTTCCEE--EEEECTTCCCEEEEEE--CSSE-----EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-T
T ss_pred EEEECCCCcee--eeecCCCCccEEEEEe--CCCE-----EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-C
Confidence 99999987433 2224666777788888 6666 88888 778 999543 33332 56788999999997 3
Q ss_pred CCEEEEeeCCeEEE
Q 010801 485 TNLIACANGNSLFF 498 (501)
Q Consensus 485 ~~~la~~~~~~~~i 498 (501)
...++++++++..+
T Consensus 444 ~~l~~~~~~~g~~~ 457 (464)
T 3v7d_B 444 KTLVAAVEKDGQSF 457 (464)
T ss_dssp TEEEEEEEETTEEE
T ss_pred CEEEEEEEeCCeEE
Confidence 34444555565443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=285.95 Aligned_cols=258 Identities=16% Similarity=0.259 Sum_probs=203.3
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~---------- 165 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE---------- 165 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS----------
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCC----------
Confidence 3459999999999999999999999999998664 346788999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|.+++|+ |++.+|++++.|++|++||+.+++.....
T Consensus 166 --~~v~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-------------------------------------- 203 (393)
T 1erj_A 166 --QDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTL-------------------------------------- 203 (393)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE--------------------------------------
T ss_pred --CCEEEEEEc--CCCCEEEEecCCCcEEEEECCCCeeEEEE--------------------------------------
Confidence 889999998 78999999999999999999987644322
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.+...+.+++|+| ++++|++| .|+.|++||+++ +.....+........+|...
T Consensus 204 ------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 204 ------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp ------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSC
T ss_pred ------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCC
Confidence 3456789999999 89999999 999999999984 44444332222233679999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|.+++|+|++ ++|++++.||.|++||+++...... ... .........+.+|...|.+++|+|++++|++|+ |+
T Consensus 259 v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~----~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 259 VYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp EEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred EEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCccc----ccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 9999999999 9999999999999999987543210 000 001111223567889999999999999999986 59
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC------CCcEEEEEeCCCeEEEEecCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.|++||+++ ++++..+.+|...+ .+++|++ ++++|++|+.||+|+||++..
T Consensus 333 ~v~iwd~~~-~~~~~~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 333 GVLFWDKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eEEEEECCC-CeEEEEECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999986 88889999998865 6888876 689999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=280.16 Aligned_cols=255 Identities=15% Similarity=0.183 Sum_probs=197.6
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|...|++++|+|++.+|++|+.|++|++||+.+++. ...+.+|.
T Consensus 73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------------~~~~~~h~------- 118 (343)
T 2xzm_R 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT---------------------------YKRFVGHQ------- 118 (343)
T ss_dssp CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE---------------------------EEEEECCC-------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE---------------------------EEEEcCCC-------
Confidence 36899999999999999999999999999999987653 46788999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|++|++||+.........
T Consensus 119 -----~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~~~~~~~~----------------------------------- 156 (343)
T 2xzm_R 119 -----SEVYSVAFS--PDNRQILSAGAEREIKLWNILGECKFSSA----------------------------------- 156 (343)
T ss_dssp -----SCEEEEEEC--SSTTEEEEEETTSCEEEEESSSCEEEECC-----------------------------------
T ss_pred -----CcEEEEEEC--CCCCEEEEEcCCCEEEEEeccCCceeeee-----------------------------------
Confidence 889999998 78999999999999999998743211110
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC----------CEEEEE-cCCeEEEEECCCCCeeeeeee
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----------~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (501)
...+|...|.+++|+|++ .+|+++ .|+.|++||.. .+....
T Consensus 157 ------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~-- 208 (343)
T 2xzm_R 157 ------------------------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYT-- 208 (343)
T ss_dssp ------------------------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEE--
T ss_pred ------------------------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEE--
Confidence 004788899999999987 688998 99999999954 333332
Q ss_pred cCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 258 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
+.+|...|.+++|+|++ ++|++++.||.|++||++...... ..+. +...|.+++|+|
T Consensus 209 -----~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~---~~~~--------------~~~~v~~v~~sp 265 (343)
T 2xzm_R 209 -----FKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQ---REFD--------------AGSTINQIAFNP 265 (343)
T ss_dssp -----EECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCS---EEEE--------------CSSCEEEEEECS
T ss_pred -----EcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccc---eeec--------------CCCcEEEEEECC
Confidence 56899999999999999 999999999999999995443211 2221 235699999999
Q ss_pred CCCEEEEEcCCcEEEEEeeCCCCcee--Eeecccccccccccc-CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 338 DGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 338 ~~~~l~~~~~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
++++++++.++.|++||+.+ .+... .+..+.. ...... .+.. .+++++|+|+|++|++|+.||.|++|+++
T Consensus 266 ~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 266 KLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPI--TKAEGQKGKNP---QCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSG--GGBTTBCCSCC---CEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcc--hhhhhhcCCCC---ceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 99999988889999999975 44333 3331110 000000 0011 13799999999999999999999999987
Q ss_pred CC
Q 010801 415 VG 416 (501)
Q Consensus 415 ~~ 416 (501)
++
T Consensus 340 ~g 341 (343)
T 2xzm_R 340 TS 341 (343)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=287.50 Aligned_cols=342 Identities=14% Similarity=0.157 Sum_probs=234.7
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|.+.|++++|+| ++++||+|+.||+|+|||+.+.+.. ...+....+ +|.
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~-~h~------- 111 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTY-DCS------- 111 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEE-ECS-------
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeec-cCC-------
Confidence 4789999999999 9999999999999999998862210 001111222 477
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecc---ccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
+.|.+++|+ +++.+|++++.||+|++||+. .++......
T Consensus 112 -----~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------------------------- 153 (437)
T 3gre_A 112 -----STVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN------------------------------- 153 (437)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE-------------------------------
T ss_pred -----CCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccc-------------------------------
Confidence 889999998 789999999999999999995 444333221
Q ss_pred ccceeccCcceEEEeccCceeeeeeEee-cCC--cccceEEEE--ecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVY-PHA--HDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~-~~~--~~~~v~~l~--~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+++.+ +.. +...+.++. +++++.+|++| .|+.|++||++. .+.+..
T Consensus 154 ---------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~---- 207 (437)
T 3gre_A 154 ---------------------CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT-LERLQI---- 207 (437)
T ss_dssp ---------------------EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT-CCEEEE----
T ss_pred ---------------------cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeeeEE----
Confidence 0111111 012 667788888 57899999999 999999999994 444443
Q ss_pred CCCCCC--cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe-
Q 010801 260 PSNMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA- 336 (501)
Q Consensus 260 ~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s- 336 (501)
+.. |...|++++|+|++ ++|++++.||.|++||+++++.. ..+.. +|...|.+++|+
T Consensus 208 ---~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~ 267 (437)
T 3gre_A 208 ---IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWSF------------GDHAPITHVEVCQ 267 (437)
T ss_dssp ---EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEBC------------TTCEEEEEEEECT
T ss_pred ---EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEec------------CCCCceEEEEecc
Confidence 334 88999999999998 99999999999999999986543 33321 245689999665
Q ss_pred ---eCCCEEEEEc-CCcEEEEEeeCCCCceeEeecccccccccccc-----------CCCCCcceeeEEEEcCCCcEEEE
Q 010801 337 ---NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-----------YNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 337 ---p~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
|++++|++++ |+.|++||+++ ++.+..+.+|...+....-. ........+++++|+ ++++|++
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence 4678999886 59999999986 88888888776543311100 000012234789999 8899999
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCcccc---eeeccCCccccCccceeeeecccceeec-cccCCcccccccCCCeE
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRK---PILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLL 477 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~l~~~~~~~~~iw-~~~~~~~~~~~~~~~i~ 477 (501)
|+.||.|++||+.+++.. ..+.+|...... ..+.+ ...+ ++.. +. ...........|...|+
T Consensus 346 ~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~------~~~~~~~~~~~~~~h~~~I~ 411 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTA--NLTM-----LLRK------MKRTSTHSVDDSLYHHDIIN 411 (437)
T ss_dssp EGGGTEEEEEETTCGGGC-EEEECC--CCCEEEEEEEET--TEEE-----EEEE------CC-------------CCCEE
T ss_pred cCCCCeEEEEECCCcccc-eEEecccccCceEEEEEeec--ceEE-----EEEe------cccccccccCccccccccee
Confidence 999999999999988544 677776543222 22222 1111 1111 00 01112233346889999
Q ss_pred EEEEccC--CCEEEEeeCCe-EEEEe
Q 010801 478 HLAWHPT--TNLIACANGNS-LFFHY 500 (501)
Q Consensus 478 ~~~~sp~--~~~la~~~~~~-~~i~~ 500 (501)
+++|+++ +.+|++|+.|+ ++||+
T Consensus 412 ~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 412 SISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999999 77999999665 99985
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-35 Score=272.71 Aligned_cols=291 Identities=14% Similarity=0.165 Sum_probs=227.8
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
...+..+|+||. +.|++|+|+ |+ +++|++|+.|++|+|||+.+.+...
T Consensus 27 ~~~l~~tL~GH~------------~~V~~v~~s--p~~~~~l~S~s~D~~i~vWd~~~~~~~~----------------- 75 (340)
T 4aow_A 27 QMTLRGTLKGHN------------GWVTQIATT--PQFPDMILSASRDKTIIMWKLTRDETNY----------------- 75 (340)
T ss_dssp EEEEEEEECCCS------------SCEEEEEEC--TTCTTEEEEEETTSCEEEEEECCSSSCS-----------------
T ss_pred ceEEEEEECCcc------------CCEEEEEEe--CCCCCEEEEEcCCCeEEEEECCCCCccc-----------------
Confidence 345667899999 999999998 55 6799999999999999998754211
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
..+.+.+ .+|...|.+++|+|++++|+++ .|+.|++|+..
T Consensus 76 --------------------------------------~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 76 --------------------------------------GIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp --------------------------------------EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred --------------------------------------ceeeEEE-eCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 1233333 7899999999999999999999 99999999998
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
... .... ...+...+..+.+++++ ++|++++.|+.+++||+...... ... ..+|.
T Consensus 117 ~~~-~~~~-------~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~-----~~~-----------~~~~~ 171 (340)
T 4aow_A 117 TGT-TTRR-------FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY-----TVQ-----------DESHS 171 (340)
T ss_dssp TTE-EEEE-------EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE-----EEC-----------SSSCS
T ss_pred ccc-eeee-------ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE-----EEE-----------ecccc
Confidence 443 3332 34566778899999998 99999999999999998765321 111 13467
Q ss_pred cceeEEEEeeCC--CEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 328 ASISDIKFANDG--QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 328 ~~i~~~~~sp~~--~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
..+..++|++++ .++++++ |+.|++||+++ .+.+..+.+|...+ ++++|+|++++|++|+.
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYL---------------NTVTVSPDGSLCASGGK 235 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEET
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcE---------------EEEEECCCCCEEEEEeC
Confidence 889999999875 4566664 69999999986 88888888888765 79999999999999999
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc-----------cccccc
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-----------ELSYNL 472 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~-----------~~~~~~ 472 (501)
||.|++||+.+.+.+ ..+.. ...+..+.++| ++. +++++.++. .+|+..... .....|
T Consensus 236 Dg~i~iwd~~~~~~~-~~~~~-~~~v~~~~~~~--~~~------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 236 DGQAMLWDLNEGKHL-YTLDG-GDIINALCFSP--NRY------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE 305 (340)
T ss_dssp TCEEEEEETTTTEEE-EEEEC-SSCEEEEEECS--SSS------EEEEEETTEEEEEETTTTEEEEEECCC-------CC
T ss_pred CCeEEEEEeccCcee-eeecC-CceEEeeecCC--CCc------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC
Confidence 999999999987443 45544 46788899987 333 567777888 999554221 122367
Q ss_pred CCCeEEEEEccCCCEEEEeeCCe-EEEEeC
Q 010801 473 SSKLLHLAWHPTTNLIACANGNS-LFFHYA 501 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~~~~-~~i~~~ 501 (501)
...|++++|+|++++||+|+.|+ ++||++
T Consensus 306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 88999999999999999999655 999973
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=281.31 Aligned_cols=258 Identities=16% Similarity=0.226 Sum_probs=205.3
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++||+|+.||.|+||++..+ ..+....+.+|.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~h~------- 55 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHE------- 55 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------------------EEEEEEEECCCS-------
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------------cceeeeEecCCC-------
Confidence 469999999999999999999999999999999844 234567788998
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|++..++.+|++++.||.|++||+.+++....
T Consensus 56 -----~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------------------------------------ 94 (379)
T 3jrp_A 56 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI------------------------------------ 94 (379)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEE------------------------------------
T ss_pred -----CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEe------------------------------------
Confidence 899999998433489999999999999999988753221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ ..|...|.+++|+|+ +.+|+++ .|+.|++||++........ .+..
T Consensus 95 ----------------------~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~ 145 (379)
T 3jrp_A 95 ----------------------AVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDA 145 (379)
T ss_dssp ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEEC
T ss_pred ----------------------eee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecC
Confidence 111 578899999999999 9999999 9999999999854332221 2567
Q ss_pred cccceEEEEEec-------------CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 266 LTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 266 ~~~~v~~v~~~p-------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
|...|.+++|+| ++ .+|++++.||.|++||++++......... +.+|...|.+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~h~~~v~~ 211 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRD 211 (379)
T ss_dssp CTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEE-------------EecccCcEeE
Confidence 889999999999 57 99999999999999999876432111112 3457889999
Q ss_pred EEEeeC---CCEEEEEc-CCcEEEEEeeCCCCce--eEee--ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 333 IKFAND---GQHLLSRD-YMNLKLWDIRMDSTPV--ATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 333 ~~~sp~---~~~l~~~~-~~~i~lwd~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
++|+|+ +++|++++ |+.|++||++...... ..+. .+...+ ++++|+|++++|++++.
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGG 276 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE---------------EEEEECSSSCCEEEEES
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE---------------EEEEEcCCCCEEEEecC
Confidence 999999 89999886 6999999998632211 1111 133322 79999999999999999
Q ss_pred CCeEEEEecCCCC
Q 010801 405 SNLLRIFSHGVGS 417 (501)
Q Consensus 405 dg~i~iwd~~~~~ 417 (501)
||.|++|++..+.
T Consensus 277 dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 277 DNKVTLWKENLEG 289 (379)
T ss_dssp SSSEEEEEEEETT
T ss_pred CCcEEEEeCCCCC
Confidence 9999999998653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=279.87 Aligned_cols=288 Identities=13% Similarity=0.142 Sum_probs=224.2
Q ss_pred ccccceEEEEEccCCCEE-EEEec---CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~l-atg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
.|.+.|++++|+|++..+ ++|+. ||.|+|||+.+++.. .....+|.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~---- 65 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------LLREIEKA---- 65 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------EEEEEEES----
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------ceeeeccc----
Confidence 489999999999999655 56665 999999999977531 12223677
Q ss_pred hccccccccceeEEEEeecCC---CCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~---~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..|.+++|+ |+ +.+|++++.|+.|++||+.+++ ....
T Consensus 66 --------~~v~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------- 106 (357)
T 3i2n_A 66 --------KPIKCGTFG--ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS----------------------------- 106 (357)
T ss_dssp --------SCEEEEECT--TCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-----------------------------
T ss_pred --------CcEEEEEEc--CCCCCCceEEEecCCCeEEEEeCCCCCccEEE-----------------------------
Confidence 889999998 55 6999999999999999998765 2221
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEE------ecCCCCEEEEE-cCCeEEEEECCCCCeeee
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS------NNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~------~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 254 (501)
+ .+|...|.+++ |+|++++|+++ .|+.|++||++.......
T Consensus 107 -------------------------------~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 107 -------------------------------V-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp -------------------------------E-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred -------------------------------E-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 1 68889999995 57899999999 999999999995543444
Q ss_pred eeecCCCCCCCcccceEEEE----EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 255 IVDMKPSNMDDLTEVITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~v~----~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
.+... ...+...+.+++ |+|++ ++|++++.||.|++||+++++.. .. ..|...|
T Consensus 155 ~~~~~---~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~--------------~~~~~~v 212 (357)
T 3i2n_A 155 NMEPV---QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----WE--------------TNIKNGV 212 (357)
T ss_dssp EECCC---TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----EE--------------EECSSCE
T ss_pred ecccc---CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----ee--------------cCCCCce
Confidence 32110 111234788888 67888 99999999999999999987532 11 2356789
Q ss_pred eEEEEee---CCCEEEEEc-CCcEEEEEeeCCCCceeEee-----ccccccccccccCCCCCcceeeEEEEcCCCc-EEE
Q 010801 331 SDIKFAN---DGQHLLSRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFA 400 (501)
Q Consensus 331 ~~~~~sp---~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~ 400 (501)
.+++|+| ++++|++++ ++.|++||+++ ++....+. +|...+ ++++|+|+++ +|+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNRELFL 276 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcEEE
Confidence 9999999 899999886 59999999986 55554444 666554 7999999998 899
Q ss_pred EEeCCCeEEEEecCCCCc------------------ceEEEecccCcccceeeccCCccccCccceee-eecccce-eec
Q 010801 401 TGSYSNLLRIFSHGVGSA------------------GGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQA-HEN 460 (501)
Q Consensus 401 s~~~dg~i~iwd~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~~~~-~iw 460 (501)
+++.||.|++||+..+.. ....+.+|..+|.+++|+| ++++ |+ +++.|+. ++|
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP--DKRG-----LCVCSSFDQTVRVL 349 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS--SSTT-----EEEEEETTSEEEEE
T ss_pred EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC--CCCe-----EEEEecCCCcEEEE
Confidence 999999999999986532 3567889999999999999 6776 77 8999999 999
Q ss_pred ccc
Q 010801 461 SSS 463 (501)
Q Consensus 461 ~~~ 463 (501)
+..
T Consensus 350 ~~~ 352 (357)
T 3i2n_A 350 IVT 352 (357)
T ss_dssp EEC
T ss_pred ECC
Confidence 554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=283.00 Aligned_cols=305 Identities=10% Similarity=0.066 Sum_probs=218.5
Q ss_pred ccceEEEEEccCCCEEEEEecCC-------cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGG-------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
.-+|++++|+|||++||+|+.|. .|++|++..+... ....+ .......+.+|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~------------~~~~~~~l~~~~--- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQF------------HILSEFALEDND--- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHE------------EEEEEEECCTTS---
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeee------------eeeeEEEccCCC---
Confidence 45899999999999999987543 5999999866431 00000 111223567777
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEe-----------eCCCeEEEEecccccee--eeeccCCCccccccccccccc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~-----------s~d~~i~lw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 171 (501)
..|.++++. +..++++ +.|+.+++|++...... ........ .......
T Consensus 74 ---------~~v~s~~~~----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 134 (365)
T 4h5i_A 74 ---------DSPTAIDAS----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFD------ASTNADD 134 (365)
T ss_dssp ---------CCCCEEEEE----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSS------CCCCTTC
T ss_pred ---------CceEEEEeC----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeecee------ecCCccc
Confidence 788888874 3455554 45788999988654321 11111000 0011112
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCe
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~ 251 (501)
.+..+.+++++.+++.+.-..++.|++||+... +++..+ .|...|.+++|+|+|++++++.++.+.+|+...+..
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDL---TEKFEI--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC 209 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---EEEEEE--ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---cEEEEe--CCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence 234456778888877665555889999999874 344444 477889999999999999999555677777664554
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC----eEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
.... ....|...|.+++|+|++ +++++++.|+ .+++||+..........+ .+.+|.
T Consensus 210 ~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~-------------~~~~~~ 269 (365)
T 4h5i_A 210 IARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSK-------------QVTNRF 269 (365)
T ss_dssp EEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEE-------------EEESSC
T ss_pred eeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeee-------------eecCCC
Confidence 4332 256788899999999999 9999999887 688899876543211111 234577
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEe-eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
..|++++|+|||++||+|+ |++|+|||+++ ++++..+ .+|...+ ++++|+|||++||+||.|
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTISPDSTYVASVSAA 333 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEECTTSCEEEEEETT
T ss_pred CCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEECCCCCEEEEEeCC
Confidence 8999999999999999986 59999999986 7888775 6888876 899999999999999999
Q ss_pred CeEEEEecCCC
Q 010801 406 NLLRIFSHGVG 416 (501)
Q Consensus 406 g~i~iwd~~~~ 416 (501)
++|+||++...
T Consensus 334 ~tvrvw~ip~~ 344 (365)
T 4h5i_A 334 NTIHIIKLPLN 344 (365)
T ss_dssp SEEEEEECCTT
T ss_pred CeEEEEEcCCC
Confidence 99999999754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=272.51 Aligned_cols=295 Identities=14% Similarity=0.148 Sum_probs=237.1
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
......+.+|. +.|++++|+ |++++|++++.||.|++||+.+++.....
T Consensus 22 ~~~~~~l~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------------- 70 (369)
T 3zwl_B 22 HMKAIKLTGHE------------RPLTQVKYN--KEGDLLFSCSKDSSASVWYSLNGERLGTL----------------- 70 (369)
T ss_dssp SEEEEEEECCS------------SCEEEEEEC--TTSCEEEEEESSSCEEEEETTTCCEEEEE-----------------
T ss_pred ccccEEEEEee------------ceEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCchhhhhh-----------------
Confidence 33446688999 999999998 78999999999999999999887654432
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
.+|...|.+++|+|++++|+++ .|+.|++||+.+
T Consensus 71 --------------------------------------------~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~- 105 (369)
T 3zwl_B 71 --------------------------------------------DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN- 105 (369)
T ss_dssp --------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-
T ss_pred --------------------------------------------hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-
Confidence 6889999999999999999999 999999999994
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
++.... +. +...+.+++|+|++ ++|++++.+ |.|++||+....... .+.. ........+.
T Consensus 106 ~~~~~~-------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~----~~~~--~~~~~~~~~~ 170 (369)
T 3zwl_B 106 GQCVAT-------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH----ELTK--VSEEPIHKII 170 (369)
T ss_dssp CCEEEE-------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC----CEEE--ECSSCSEEEE
T ss_pred CcEEEE-------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce----eecc--cccceeeecc
Confidence 444443 22 67789999999999 999999998 999999998765431 1111 1111222334
Q ss_pred eccc--ceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 325 EIIA--SISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 325 ~h~~--~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
.|.. .+.+++|+|++++|++++ ++.|++||+++..+.+..+..|...+ .+++|+|++++|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI---------------SDMQFSPDLTYFIT 235 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE---------------EEEEECTTSSEEEE
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce---------------eEEEECCCCCEEEE
Confidence 4555 899999999999999886 59999999986467788888887765 79999999999999
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccc--------------e-eeccc--cC
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ--------------A-HENSS--SG 464 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~-~iw~~--~~ 464 (501)
++.||.|++||+.+++.. ..+. +...+..++++| ++++ +++++.++ . .+|+. .+
T Consensus 236 ~~~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~-----l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 236 SSRDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITP--LKEF-----IILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp EETTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECS--SSSE-----EEEEECCC-------------CEEEEEETTTCC
T ss_pred ecCCceEEEEECCCCcee-eeec-CCCCceeEEecC--CCce-----EEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999999987443 4454 778899999998 6666 88888777 5 67733 33
Q ss_pred CcccccccCCCeEEEEEccCCCEEEEeeCC-eEEEEe
Q 010801 465 HHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 465 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~ 500 (501)
.......|...|++++|+|++++|++++.| .+++|+
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 307 EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred chhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 444566789999999999999999999855 599996
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=282.50 Aligned_cols=302 Identities=9% Similarity=0.074 Sum_probs=232.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+| ++||+|+.||.|+||++.+++.. ........+.+|.
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~-------- 62 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK-------- 62 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT--------
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC--------
Confidence 6899999999998 79999999999999999977521 1223456777898
Q ss_pred cccccceeEEEEeecCC----C---CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 110 LEIEEKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~----~---~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
..|.+++|+ ++ + .+|++++.|+.|++|++.+++....
T Consensus 63 ----~~v~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~------------------------------ 106 (397)
T 1sq9_A 63 ----SGLHHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDETKK------------------------------ 106 (397)
T ss_dssp ----TCEEEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC------------------------------
T ss_pred ----CcEEEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCccccc------------------------------
Confidence 889999998 56 8 8999999999999999987663000
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCc-----ccceEEEEec----CCCCE-EEEE-cCCeEEEEECCCC--
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH-----DFNINSISNN----SDCET-FVSA-DDLRINLWNLEIS-- 249 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~----~~~~~-l~~~-~d~~i~iwd~~~~-- 249 (501)
.....+ ..| ...|.+++|+ |+++. |+++ .|+.|++||+...
T Consensus 107 -------------------------~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 107 -------------------------VIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp -------------------------EEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred -------------------------ccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 001111 455 5899999999 99999 9998 9999999999840
Q ss_pred ---Ceeee-----eeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcc
Q 010801 250 ---DQCFN-----IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (501)
Q Consensus 250 ---~~~~~-----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
...+. .+.........|...|.+++|+|++ +|++++.||.|++||+++++.. ..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~----~~~~~--------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES--------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC---------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCcee----EEEec---------
Confidence 22222 1100000014578899999999996 8999999999999999886533 22222
Q ss_pred eeeec---ccceeEEEEeeCCCEEEEEc-C---CcEEEEEeeCCCCceeEeec-------------cccccccccccCCC
Q 010801 322 FFTEI---IASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKI-------------HEHLRPKLCDLYNN 381 (501)
Q Consensus 322 ~~~~h---~~~i~~~~~sp~~~~l~~~~-~---~~i~lwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 381 (501)
..+| ...|.+++|+|++++|++++ + +.|++||+++ ++.+..+.+ |...+
T Consensus 226 -~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v--------- 294 (397)
T 1sq9_A 226 -QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV--------- 294 (397)
T ss_dssp -CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE---------
T ss_pred -cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE---------
Confidence 0125 67899999999999999874 6 8999999986 788888887 65544
Q ss_pred CCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe------cc---------------cCcccceeeccCC-
Q 010801 382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE------AG---------------KNENRKPILQAAP- 439 (501)
Q Consensus 382 ~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~- 439 (501)
.+++|+|++++|++++.||.|++||+.++ .....+. +| ...|..++++|..
T Consensus 295 ------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 295 ------MSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp ------EEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred ------EEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 79999999999999999999999999988 4457788 77 9999999999842
Q ss_pred -------ccccCccceeeeecccce-eeccc
Q 010801 440 -------RARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 440 -------~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
++.+ |++++.|+. .+|+.
T Consensus 368 ~~~~~~~~~~~-----l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 368 RSGMGADLNES-----LCCVCLDRSIRWFRE 393 (397)
T ss_dssp SBSTTCTTSCE-----EEEEETTTEEEEEEE
T ss_pred cccccccccce-----EEEecCCCcEEEEEc
Confidence 1156 899999999 99954
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=265.58 Aligned_cols=275 Identities=14% Similarity=0.101 Sum_probs=215.6
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++| |++++||+|+.||.|++||+.+++ ....+..|.
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~-------- 59 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQ-------- 59 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECS--------
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCC--------
Confidence 68999999999 999999999999999999997654 336677888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++.+|++++.|+.|++|++......
T Consensus 60 ----~~v~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~~--------------------------------------- 94 (313)
T 3odt_A 60 ----GFLNSVCYD--SEKELLLFGGKDTMINGVPLFATSGE--------------------------------------- 94 (313)
T ss_dssp ----SCEEEEEEE--TTTTEEEEEETTSCEEEEETTCCTTS---------------------------------------
T ss_pred ----ccEEEEEEC--CCCCEEEEecCCCeEEEEEeeecCCC---------------------------------------
Confidence 889999998 78999999999999999998764311
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
++...+ .+|...|.+++| +++.++++ .|+.|++||. ...... +..|..
T Consensus 95 ------------------~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~-------~~~~~~ 143 (313)
T 3odt_A 95 ------------------DPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYN-------LQAHNA 143 (313)
T ss_dssp ------------------CC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEE-------EECCSS
T ss_pred ------------------Ccccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEe-------cccCCC
Confidence 111112 688999999999 57789998 9999999992 233332 567889
Q ss_pred ceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c
Q 010801 269 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (501)
Q Consensus 269 ~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~ 346 (501)
.+.+++|.| ++ +++++++.||.|++||.... . ..+.. .|...+.+++|+|++. ++++ .
T Consensus 144 ~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~--~----~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 144 SVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV--I----KTFSG------------IHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp CEEEEEEEETTT-TEEEEEETTSCEEEEETTEE--E----EEECS------------SCSSCEEEEEEEETTE-EEEEET
T ss_pred ceeEEEEccCCC-CEEEEEECCCCEEEEecCce--E----EEEec------------cCcccEEEEEEcCCCe-EEEccC
Confidence 999999998 66 99999999999999994322 1 22221 1467899999999999 5555 5
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
++.|++||+++ ++++..+.+|...+ ++++|+|++ .|++++.||.|++||+.+++ ....+..|
T Consensus 204 dg~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~ 265 (313)
T 3odt_A 204 DGLIKLVDMHT-GDVLRTYEGHESFV---------------YCIKLLPNG-DIVSCGEDRTVRIWSKENGS-LKQVITLP 265 (313)
T ss_dssp TSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTS-CEEEEETTSEEEEECTTTCC-EEEEEECS
T ss_pred CCeEEEEECCc-hhhhhhhhcCCceE---------------EEEEEecCC-CEEEEecCCEEEEEECCCCc-eeEEEecc
Confidence 69999999986 88888998888765 799999999 58899999999999999884 34666666
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
...+.+++++| +++ +++++.|+. .+|+.
T Consensus 266 ~~~i~~~~~~~--~~~------~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 266 AISIWSVDCMS--NGD------IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp SSCEEEEEECT--TSC------EEEEETTSCEEEEES
T ss_pred CceEEEEEEcc--CCC------EEEEeCCCcEEEEeC
Confidence 66666666665 332 234555655 66633
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=276.59 Aligned_cols=345 Identities=16% Similarity=0.214 Sum_probs=229.2
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeE-----eeeccCCcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-----TEFQSHEPE 103 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~ 103 (501)
.|.+.|++++|+| ++++||+|+.||.|+|||+.+++.... ...... ....+|.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-- 99 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-------------------YTCKAVCSIGRDHPDVHR-- 99 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-------------------EEECEEEEECTTCTTCCS--
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-------------------EeccccccccccccccCC--
Confidence 4999999999999 999999999999999999998765300 000000 0113576
Q ss_pred hhhccccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 104 FDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
..|.+++|+ | ++.+|++++.|+.|++||+.+++.....
T Consensus 100 ----------~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------- 138 (408)
T 4a11_B 100 ----------YSVETVQWY--PHDTGMFTSSSFDKTLKVWDTNTLQTADVF----------------------------- 138 (408)
T ss_dssp ----------SCEEEEEEC--TTCTTCEEEEETTSEEEEEETTTTEEEEEE-----------------------------
T ss_pred ----------CcEEEEEEc--cCCCcEEEEEeCCCeEEEeeCCCCccceec-----------------------------
Confidence 889999998 5 6789999999999999999987654432
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC---CCEEEEE-cCCeEEEEECCCCCeeeeeeec
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDM 258 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 258 (501)
.+...+.++.+++. +.+++++ .|+.|++||++.. .....
T Consensus 139 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~--- 181 (408)
T 4a11_B 139 ---------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHI--- 181 (408)
T ss_dssp ---------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEE---
T ss_pred ---------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeee---
Confidence 34567888888874 4589998 9999999999844 44433
Q ss_pred CCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc--ccCCCcceeeecccceeEEEEe
Q 010801 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--ESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~s 336 (501)
+..|...|.+++|+|++..+|++++.||.|++||++++.... ..+..+. ..........+|...|.+++|+
T Consensus 182 ----~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 182 ----LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL---ITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp ----ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS---EECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred ----ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc---ccccccccccceeeccccccccCceeEEEEc
Confidence 567999999999999983379999999999999998875332 2222211 1112223346788999999999
Q ss_pred eCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 337 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 337 p~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
|++++|++++ |+.|++||+.+ ++....+..+...... ... ........+..+++++.|+.|++||+.+
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNSK-------KGL---KFTVSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCCS-------SCC---CCEECCSSSSCEEEEEETTEEEEEETTT
T ss_pred CCCCEEEEecCCCeEEEEECCC-Cccceecccccccccc-------ccc---eeEEecCCCceEEEEecCCEEEEEECcC
Confidence 9999999885 59999999986 5544444332211100 000 1122223455677778899999999998
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCC--CEEEEee
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTT--NLIACAN 492 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~--~~la~~~ 492 (501)
++ ....+.+|...|.+++++| ++.+ |++++.|+. .+|+........ .....-....+.|.. .+...+.
T Consensus 324 ~~-~~~~~~~~~~~v~~~~~s~--~~~~-----l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 324 GE-QITMLKGHYKTVDCCVFQS--NFQE-----LYSGSRDCNILAWVPSLYEPVP-DDDETTTKSQLNPAFEDAWSSSDE 394 (408)
T ss_dssp CC-EEEEECCCSSCEEEEEEET--TTTE-----EEEEETTSCEEEEEECC------------------------------
T ss_pred Cc-ceeeeccCCCeEEEEEEcC--CCCE-----EEEECCCCeEEEEeCCCCCccC-CCCceEeccccccccceeecccCc
Confidence 84 4588999999999999998 6777 999999999 999555322111 111111123344433 2333344
Q ss_pred CCeEEEEe
Q 010801 493 GNSLFFHY 500 (501)
Q Consensus 493 ~~~~~i~~ 500 (501)
++.+.+|+
T Consensus 395 ~~~~~~W~ 402 (408)
T 4a11_B 395 EGGTSAWS 402 (408)
T ss_dssp --------
T ss_pred cCceeecC
Confidence 66788886
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=282.40 Aligned_cols=294 Identities=15% Similarity=0.165 Sum_probs=232.2
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|.+.|++++|+|++++||+|+.||.|++|| .+++ ....+.+|.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~---------------------------~~~~~~~~~--------- 149 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA---------------------------LLNVLNFHR--------- 149 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC---------------------------EEEEECCCC---------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC---------------------------eeeeccCCC---------
Confidence 678999999999999999999999999999 3322 446778898
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++............
T Consensus 150 ---~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------------ 194 (425)
T 1r5m_A 150 ---APIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGG------------------------------ 194 (425)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------------------------------
T ss_pred ---ccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc------------------------------
Confidence 889999998 789999999999999999999887655442211000
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
..+ .... .......+.+++|+|++ .++++ .++.|++||+... ..... +..|...
T Consensus 195 ---~~~------------~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~-~~~~~-------~~~~~~~ 249 (425)
T 1r5m_A 195 ---SSI------------NAEN-HSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK-TPTGK-------LIGHHGP 249 (425)
T ss_dssp ---------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS-SCSEE-------ECCCSSC
T ss_pred ---cce------------eecc-ccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC-ceeee-------eccCCCc
Confidence 000 0000 02333448889999986 46666 9999999999944 43332 5678899
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
|.+++|+|++ ++|++++.||.|++||+++++.. ..+. +|...|.+++|+|++ ++++++ ++
T Consensus 250 i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~-~l~~~~~d~ 310 (425)
T 1r5m_A 250 ISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NCFY-------------GHSQSIVSASWVGDD-KVISCSMDG 310 (425)
T ss_dssp EEEEEEETTT-TEEEEEETTSCEEEECSSSBSCS----EEEC-------------CCSSCEEEEEEETTT-EEEEEETTS
T ss_pred eEEEEECCCC-CEEEEEcCCCEEEEEECCCCccc----eEec-------------CCCccEEEEEECCCC-EEEEEeCCC
Confidence 9999999999 99999999999999999886543 3333 356889999999999 777765 69
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC-----------
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS----------- 417 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~----------- 417 (501)
.|++||+++ ++.+..+..|...+ .+++|+|++++|++++.||.|++||+.++.
T Consensus 311 ~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 311 SVRLWSLKQ-NTLLALSIVDGVPI---------------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp EEEEEETTT-TEEEEEEECTTCCE---------------EEEEECTTSSEEEEEETTSCEEEEECHHHHC----------
T ss_pred cEEEEECCC-CcEeEecccCCccE---------------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence 999999986 78888888777655 789999999999999999999999998764
Q ss_pred --------cceEEEecccC--cccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 418 --------AGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 418 --------~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.....+..|.. .+..++|+| ++++ |++++.++. .+|+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 375 GILNPLPIPLYASYQSSQDNDYIFDLSWNC--AGNK-----ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ----CEECCEEEEECCTTCCCCEEEEEECT--TSSE-----EEEEESSSCCEEEECC
T ss_pred cccCcccchhhhhhcCcccCCceEEEEccC--CCce-----EEEEecCceEEEEeec
Confidence 14578888977 999999998 6777 999999999 999543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=282.53 Aligned_cols=320 Identities=8% Similarity=-0.002 Sum_probs=215.1
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...|.+|+|||||+++|+++.|++|+ |...++. +.+|.
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~------------------------------l~gh~---------- 52 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD------------------------------INCNS---------- 52 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC------------------------------CSSBG----------
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccce------------------------------ecCCC----------
Confidence 58899999999999999999999999 7554432 23444
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..|.+++|+ |+| .++.+.+|+.+... .... .+...+....+++++..++.+..
T Consensus 53 --~~v~~V~Fs--Pdg-------~~~~~~~~~~~~~~---~~~~------------~~~~~V~~vawSPdG~~LAs~s~- 105 (588)
T 2j04_A 53 --KNLFHVKEF--PLE-------FENKLDFELAQQNG---LLNS------------QPVCYPRVCKPSPIDDWMAVLSN- 105 (588)
T ss_dssp --GGTEEEEEE--CCC-------CCCTTTTSCCCSSC---SSTT------------SCSCCEEEEEECSSSSCEEEEET-
T ss_pred --ccEEEEEEC--CCC-------CcceEEEEeCCCce---Eeec------------CCCCcEEEEEECCCCCEEEEEeC-
Confidence 445555554 333 23333332221111 1000 01223444444444444444432
Q ss_pred cCcceEEEeccCceeeeeeEeecCCccc-----ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe------eeeeeecC
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDF-----NINSISNNSDCETFVSA-DDLRINLWNLEISDQ------CFNIVDMK 259 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~------~~~~~~~~ 259 (501)
+|.+++|+.+. ++..+ . |.. .|.+++|+|||++|++| .||+|++||+..+.. .+..+.
T Consensus 106 -dg~V~iwd~~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~-- 175 (588)
T 2j04_A 106 -NGNVSVFKDNK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR-- 175 (588)
T ss_dssp -TSCEEEEETTE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE--
T ss_pred -CCcEEEEeCCc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee--
Confidence 44455554321 22332 4 444 59999999999999999 999999999994321 123221
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
....+|...|.+++|+|+| +++++.|+.|++||+.++.... ..+.+. .+|...|.+++|+ |
T Consensus 176 -~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~-~~~tL~------------~~h~~~V~svaFs--g 236 (588)
T 2j04_A 176 -LSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQP-VSRMIQ------------NASRRKITDLKIV--D 236 (588)
T ss_dssp -CSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCC-CEEEEE------------CCCSSCCCCEEEE--T
T ss_pred -cccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccc-ceeeec------------ccccCcEEEEEEE--C
Confidence 1236788999999999986 8889999999999998765210 001221 1356789999999 6
Q ss_pred CEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE--cCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 340 QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 340 ~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
+.||++++++|++||+.. ++......+|...+ ..++| +||+..|++++.||+ ++|..+
T Consensus 237 ~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~V---------------~~va~~~s~d~~~La~a~edG~-klw~~d--- 296 (588)
T 2j04_A 237 YKVVLTCPGYVHKIDLKN-YSISSLKTGSLENF---------------HIIPLNHEKESTILLMSNKTSY-KVLLED--- 296 (588)
T ss_dssp TEEEEECSSEEEEEETTT-TEEEEEECSCCSCC---------------CEEEETTCSSCEEEEECSSCEE-EEEESS---
T ss_pred CEEEEEeCCeEEEEECCC-CeEEEEEcCCCceE---------------EEEEeeeCCCCCEEEEEcCCCC-EEEeec---
Confidence 899988889999999974 44423333777765 68999 999999999999999 999987
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCEEEEee
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
.+.++| ++.+ +++ .++. ++|+.........+....|.+++|||||+.||+++
T Consensus 297 --------------~~~~sp--d~~l-----~a~--~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 --------------ELHVTA--DNII-----APY--LEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------SEEEEC--CCSS-----HHH--HHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred --------------cEEECC--CceE-----EEE--cCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 144666 5554 454 3778 99966433332344466799999999999999987
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=301.94 Aligned_cols=365 Identities=14% Similarity=0.141 Sum_probs=271.0
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---------------------------~~~~~~~~-------- 97 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK---------------------------VVDFEAHP-------- 97 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE---------------------------EEEEECCS--------
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEecCC--------
Confidence 4889999999999999999999999999999987653 36678898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccc-ceeeeeccCCCcccccccccccccCccccCCCC-CCccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 187 (501)
+.|.+++|+ |++.+|++++.||.|++|++.++ ........ +...+....+.+ +...++.
T Consensus 98 ----~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 98 ----DYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-------------HEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp ----SCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-------------CSSCEEEEEEETTEEEEEEE
T ss_pred ----CCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-------------CCCcEEEEEEEcCCCCEEEE
Confidence 889999998 78999999999999999999886 33333221 123344555555 4555555
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
+.. ++.+++|++.... ....+...+...+.+++|+| ++.+++++ .|+.|++||+. .+..... +.
T Consensus 159 ~~~--dg~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-------~~ 225 (814)
T 3mkq_A 159 GCL--DRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT-------LE 225 (814)
T ss_dssp EET--TSEEEEEETTCSS---CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT-TTEEEEE-------EE
T ss_pred EeC--CCeEEEEECCCCc---ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC-CCcEEEE-------Ec
Confidence 543 7899999987633 33333245668999999999 99999999 99999999998 4444443 56
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC--EE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HL 342 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l 342 (501)
+|...|.+++|+|++ .+|++++.||.|++||+.+++.. ..+.. |...+.+++|+|++. ++
T Consensus 226 ~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~~~~ 287 (814)
T 3mkq_A 226 GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KTLNV-------------GLERSWCIATHPTGRKNYI 287 (814)
T ss_dssp CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EEECC-------------SSSSEEEEEECTTCGGGEE
T ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEeec-------------CCCcEEEEEEccCCCceEE
Confidence 788999999999999 99999999999999999887543 23322 457899999999987 57
Q ss_pred EEEcCCcEEEEEeeCCCCceeEeecccccccc-----------------ccccCC-----------CCCcceeeEEEEcC
Q 010801 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK-----------------LCDLYN-----------NDSIFDKFECSVSG 394 (501)
Q Consensus 343 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~s~ 394 (501)
+++.++.+.+|++.. ..+...+......+.. ...... ......+.+++|+|
T Consensus 288 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 366 (814)
T 3mkq_A 288 ASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366 (814)
T ss_dssp EEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred EEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence 778888899999864 3332222211000000 000000 00111237899999
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccC
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS 473 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~ 473 (501)
+|++|++++ ||.+.+|++.... ..+.+.+.+++|+| ++++ +++++.++. .+|+ ...++.
T Consensus 367 dg~~la~~~-~~~~~i~~~~~~~------~~~~~~i~~~~~sp--dg~~-----la~~~~~g~v~l~~------~~~~~~ 426 (814)
T 3mkq_A 367 NGRFVTVVG-DGEYVIYTALAWR------NKAFGKCQDFVWGP--DSNS-----YALIDETGQIKYYK------NFKEVT 426 (814)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTE------EEEEEECSEEEECT--TSSC-----EEEECTTCCEEEEE------TTEECT
T ss_pred CCCEEEEec-CCEEEEEECcccc------ccCCCceEEEEEeC--CCCe-----EEEEeCCCcEEEEE------CCCCcc
Confidence 999999998 8999999986431 12346788999998 7777 999999998 9993 223566
Q ss_pred CCeEEEEEccCC---CEEEEee-CCeEEEEe
Q 010801 474 SKLLHLAWHPTT---NLIACAN-GNSLFFHY 500 (501)
Q Consensus 474 ~~i~~~~~sp~~---~~la~~~-~~~~~i~~ 500 (501)
..+.+++|+|++ ..|++++ ++.+++|+
T Consensus 427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp TCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred ceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence 688899999998 4555544 67799997
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=262.22 Aligned_cols=252 Identities=15% Similarity=0.192 Sum_probs=193.7
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ +++++|++|+.|++|++||+.++..
T Consensus 3 ~~~~~h~------------~~V~~~~~s--~~g~~las~s~D~~v~iw~~~~~~~------------------------- 43 (297)
T 2pm7_B 3 VIANAHN------------EMIHDAVMD--YYGKRMATCSSDKTIKIFEVEGETH------------------------- 43 (297)
T ss_dssp EECCSCS------------SCEEEEEEC--TTSSEEEEEETTSCEEEEEBCSSCB-------------------------
T ss_pred eeccCCc------------CceEEEEEC--CCCCEEEEEeCCCEEEEEecCCCCc-------------------------
Confidence 4577888 899999998 8999999999999999999875321
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCC-
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD- 250 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~- 250 (501)
+++..+ .+|...|++++|++ ++++|++| .|++|++||++.+.
T Consensus 44 ---------------------------------~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 44 ---------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp ---------------------------------CCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred ---------------------------------EEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 111222 78999999999986 38899999 99999999998432
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
.... .+.+|...|.+++|+|+ + .+|++++.|+.|++||++++.... ... +.+|..
T Consensus 90 ~~~~-------~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~-------------~~~h~~ 146 (297)
T 2pm7_B 90 SQIA-------VHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PII-------------IDAHAI 146 (297)
T ss_dssp CCCE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEE-------------EECCSS
T ss_pred EEEE-------EeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eee-------------eecccC
Confidence 1222 25678999999999997 6 899999999999999998753210 012 245778
Q ss_pred ceeEEEEeeC-------------CCEEEEEc-CCcEEEEEeeCCCC----ceeEeeccccccccccccCCCCCcceeeEE
Q 010801 329 SISDIKFAND-------------GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (501)
Q Consensus 329 ~i~~~~~sp~-------------~~~l~~~~-~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (501)
.|.+++|+|+ +++|++|+ |+.|++||++. ++ ....+.+|...+ .++
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V---------------~~v 210 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV---------------RDV 210 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE---------------EEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCce---------------EEE
Confidence 9999999997 56888885 69999999986 44 456777888765 799
Q ss_pred EEcCCC---cEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcc
Q 010801 391 SVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHE 467 (501)
Q Consensus 391 ~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~ 467 (501)
+|+|++ ++|++++.|++|+|||+.+....... ..+
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~----------~~~-------------------------------- 248 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK----------TLL-------------------------------- 248 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE----------EES--------------------------------
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCccce----------eee--------------------------------
Confidence 999984 89999999999999999764211000 000
Q ss_pred cccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 468 LSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 468 ~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
....|...|.+++|+|++++||+++.|+ +++|+
T Consensus 249 ~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 0113445788999999999999888554 88886
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=274.23 Aligned_cols=281 Identities=13% Similarity=0.185 Sum_probs=229.2
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------ 147 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 147 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 5778999975 5888875 899999999988642 223445676
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|++|+|+ |+|++|++|+.||+|++||+.+++.....
T Consensus 148 ~~V~sv~fs--pdg~~lasgs~Dg~v~iWd~~~~~~~~~~---------------------------------------- 185 (420)
T 4gga_A 148 EYISSVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNM---------------------------------------- 185 (420)
T ss_dssp CCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE----------------------------------------
T ss_pred CcEEEEEEC--CCCCEEEEEECCCeEEEEEcCCCcEEEEE----------------------------------------
Confidence 889999998 89999999999999999999988755432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...+.+++++ +..+++| .|+.+++||.......... +.+|...+..
T Consensus 186 ---------------------~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~ 235 (420)
T 4gga_A 186 ---------------------TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCG 235 (420)
T ss_dssp ---------------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred ---------------------eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE-------ecccccceee
Confidence 6888899888774 6789998 9999999999855555443 6789999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEE--c-CC
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--D-YM 348 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~--~-~~ 348 (501)
+.|+|++ +++++++.|+.+++||..+++........ ...|...|.+++|+|++. +++++ + |+
T Consensus 236 ~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~-------------~~~~~~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 236 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT-------------FTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEE-------------ECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred eeecCCC-CeeeeeeccccceEEeeccccccceeeee-------------ecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence 9999999 99999999999999999887543222222 234678999999999765 55543 3 59
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe--CCCeEEEEecCCCCcceEEEecc
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
.|++||+.+ +++...+..+... .++.|+|+++.+++++ .|+.|+|||+.+++. ..++.+|
T Consensus 302 ~I~iwd~~t-~~~~~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~-v~~l~gH 363 (420)
T 4gga_A 302 HIRIWNVCS-GACLSAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELKGH 363 (420)
T ss_dssp EEEEEETTT-TEEEEEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEECCC
T ss_pred EEEEEeCCc-cccceeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCCcE-EEEEcCC
Confidence 999999986 8888887766543 6899999999988765 689999999998854 5889999
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eeccccC
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
.+.|.+++|+| ++.+ |++|+.|+. ++|+..+
T Consensus 364 ~~~V~~l~~sp--dg~~-----l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 364 TSRVLSLTMSP--DGAT-----VASAAADETLRLWRCFE 395 (420)
T ss_dssp SSCEEEEEECT--TSSC-----EEEEETTTEEEEECCSC
T ss_pred CCCEEEEEEcC--CCCE-----EEEEecCCeEEEEECCC
Confidence 99999999999 7888 999999999 9996543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=268.07 Aligned_cols=272 Identities=12% Similarity=0.121 Sum_probs=210.0
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++||+|+.||.|+|||+.++.. ..+....+.+|.
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~------- 57 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD------- 57 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence 36999999999999999999999999999999987643 345667788998
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+|..++.+|++++.||.|++||+.+++.....
T Consensus 58 -----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~----------------------------------- 97 (351)
T 3f3f_A 58 -----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG----------------------------------- 97 (351)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS-----------------------------------
T ss_pred -----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc-----------------------------------
Confidence 8999999984226899999999999999999876421100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeee------cC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVD------MK 259 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~------~~ 259 (501)
...++...+ ..|...|.+++|+|+ +.+|+++ .|+.|++||++... ....+. ..
T Consensus 98 ----------------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 98 ----------------RRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS-DLRSWTLTSEMKVL 159 (351)
T ss_dssp ----------------CSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT-CTTCCEEEEEEESC
T ss_pred ----------------cCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH-Hhcccccccccccc
Confidence 001223333 688999999999999 9999998 99999999998443 222111 11
Q ss_pred CCCCCCcccceEEEEEecC---CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 260 PSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
......|...+.+++|+|+ + .+|++++.++.+.+|+...+... ... .+.+|...|.+++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~----~~~-----------~~~~h~~~i~~~~~~ 223 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH----VAA-----------KLPGHKSLIRSISWA 223 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE----EEE-----------ECCCCCSCEEEEEEC
T ss_pred ccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee----eee-----------ecCCCCcceeEEEEC
Confidence 1123467889999999997 6 89999999999988887765421 111 124577899999999
Q ss_pred eCC----CEEEEEc-CCcEEEEEeeCCC---------------------------------------------CceeEee
Q 010801 337 NDG----QHLLSRD-YMNLKLWDIRMDS---------------------------------------------TPVATFK 366 (501)
Q Consensus 337 p~~----~~l~~~~-~~~i~lwd~~~~~---------------------------------------------~~~~~~~ 366 (501)
|++ ++|++++ |+.|++||++... +.+..+.
T Consensus 224 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp CCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 998 7888885 5999999998521 3444455
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
+|...+ ++++|+|++++|++|+.||.|+||++.+++..
T Consensus 304 ~h~~~v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 304 DHNGEV---------------WSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp TTSSCE---------------EEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cccccE---------------EEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 555543 89999999999999999999999999987543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=275.77 Aligned_cols=273 Identities=12% Similarity=0.146 Sum_probs=208.4
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeecc-CCcchhhccccccc
Q 010801 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIE 113 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~ 113 (501)
+.+++|++ ..+++++.||.|++|++.+++.. ..+.. |.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~---------------------------~~~~~~~~------------ 134 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVS---------------------------ALAETDES------------ 134 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEE---------------------------EEEECCTT------------
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEe---------------------------EeeecCCC------------
Confidence 45566664 55778889999999999877541 33333 66
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++|+ |++.+|++++.||.|++||+.+++.....
T Consensus 135 ~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------------------------- 172 (401)
T 4aez_A 135 TYVASVKWS--HDGSFLSVGLGNGLVDIYDVESQTKLRTM---------------------------------------- 172 (401)
T ss_dssp CCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEE----------------------------------------
T ss_pred CCEEEEEEC--CCCCEEEEECCCCeEEEEECcCCeEEEEe----------------------------------------
Confidence 889999998 78999999999999999999887644432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...|.+++| +++.+++| .|+.|++||++........ +.+|...|.+
T Consensus 173 ---------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~ 222 (401)
T 4aez_A 173 ---------------------AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCG 222 (401)
T ss_dssp ---------------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred ---------------------cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeE
Confidence 688999999999 45789998 9999999999855544443 5679999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEEc---CC
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD---YM 348 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~~---~~ 348 (501)
++|+|++ ++|++++.||.|++||+++++.. ..+ .+|...|.+++|+|++. ++++++ |+
T Consensus 223 ~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~-------------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 223 LAWRSDG-LQLASGGNDNVVQIWDARSSIPK----FTK-------------TNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTCSSEE----EEE-------------CCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred EEEcCCC-CEEEEEeCCCeEEEccCCCCCcc----EEe-------------cCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 9999998 99999999999999999986433 222 23678999999999765 555654 69
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE--eCCCeEEEEecCCCCcc-eEEEec
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSAG-GITVEA 425 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~-~~~~~~ 425 (501)
.|++||+++ ++.+..+..+.. + .+++|+|++++|+++ +.||.|++|++.++... ...+.+
T Consensus 285 ~i~i~d~~~-~~~~~~~~~~~~-v---------------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 285 QIHFWNAAT-GARVNTVDAGSQ-V---------------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp EEEEEETTT-CCEEEEEECSSC-E---------------EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEECCC-CCEEEEEeCCCc-E---------------EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 999999986 777777764332 2 799999999999984 48999999999876332 223456
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
|...+..++++| ++.+ |++++.|+. .+|+.
T Consensus 348 h~~~v~~~~~s~--dg~~-----l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 348 HDTRVLYSALSP--DGRI-----LSTAASDENLKFWRV 378 (401)
T ss_dssp CSSCCCEEEECT--TSSE-----EEEECTTSEEEEEEC
T ss_pred CCCCEEEEEECC--CCCE-----EEEEeCCCcEEEEEC
Confidence 666555555555 4444 555555555 55533
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=270.26 Aligned_cols=285 Identities=10% Similarity=0.027 Sum_probs=226.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++++|+|++++||+|+.||.|+||++.+++. ......+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~------------------------~~~~~~~~~~~-------- 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------NVDLLQSLRYK-------- 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------EEEEEEEEECS--------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc------------------------cccceeeeecC--------
Confidence 6899999999999999999999999999999987642 11224455788
Q ss_pred cccccceeEEEEeecCCCC-EEEEeeCCCeEEEEec-cccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|.+++|+ ++++ +|++++.||.|++||+ .+++....
T Consensus 57 ----~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----------------------------------- 95 (342)
T 1yfq_A 57 ----HPLLCCNFI--DNTDLQIYVGTVQGEILKVDLIGSPSFQAL----------------------------------- 95 (342)
T ss_dssp ----SCEEEEEEE--ESSSEEEEEEETTSCEEEECSSSSSSEEEC-----------------------------------
T ss_pred ----CceEEEEEC--CCCCcEEEEEcCCCeEEEEEeccCCceEec-----------------------------------
Confidence 889999998 6789 9999999999999999 77653221
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCC--cccceEEEEecCCCCEEEEE-cCCeEEEEECCCC--------Ceeeeee
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIV 256 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~--------~~~~~~~ 256 (501)
.+ |...|.+++|+| ++.++++ .|+.|++||++.. .+.+.
T Consensus 96 ---------------------------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 145 (342)
T 1yfq_A 96 ---------------------------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-- 145 (342)
T ss_dssp ---------------------------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--
T ss_pred ---------------------------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--
Confidence 46 899999999999 9999998 9999999998830 22222
Q ss_pred ecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEE
Q 010801 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (501)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 335 (501)
.+. |...|.+++|+|++ +++++.|+.|++||+++ +.... .... ..|...+.+++|
T Consensus 146 -----~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~~~------------~~~~~~i~~i~~ 201 (342)
T 1yfq_A 146 -----NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TIEE------------SGLKYQIRDVAL 201 (342)
T ss_dssp -----SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EEEE------------CSCSSCEEEEEE
T ss_pred -----EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---eeee------------cCCCCceeEEEE
Confidence 233 88899999999875 99999999999999987 43211 1111 234678999999
Q ss_pred ee-CCCEEEEEc-CCcEEEEEeeCC-----CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 336 AN-DGQHLLSRD-YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 336 sp-~~~~l~~~~-~~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+| +++++++++ ++.|++|+++.. .+....+..|...... ......+.+++|+|++++|++++.||.|
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD------TNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC------CSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc------cccceeEEEEEEcCCCCEEEEecCCceE
Confidence 99 999999886 599999999863 2777888877541100 0001123799999999999999999999
Q ss_pred EEEecCCCCcceEEEecc-cCcccceeeccCCccccCccceeeeecccce
Q 010801 409 RIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
++||+.+++ ....+.+| ..+|.+++ + ++.+ |++++.|+.
T Consensus 276 ~vwd~~~~~-~~~~~~~~h~~~v~~~~--~--~~~~-----l~s~s~Dg~ 315 (342)
T 1yfq_A 276 SCWNLQTRK-KIKNFAKFNEDSVVKIA--C--SDNI-----LCLATSDDT 315 (342)
T ss_dssp EEEETTTTE-EEEECCCCSSSEEEEEE--E--CSSE-----EEEEEECTH
T ss_pred EEEcCccHh-HhhhhhcccCCCceEec--C--CCCe-----EEEEecCCc
Confidence 999999884 45778888 99999988 4 7777 999998887
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=288.06 Aligned_cols=346 Identities=14% Similarity=0.125 Sum_probs=264.0
Q ss_pred ccccc-eEEEEEcc--CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDI-VSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~-v~~v~~s~--~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.|.+. |++++|+| ++++||+|+.||.|+|||+.+++.. ..........+.+|.
T Consensus 61 ~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~-------------------~~~~~~~~~~~~~~~----- 116 (615)
T 1pgu_A 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------------------NSVEVNVKSEFQVLA----- 116 (615)
T ss_dssp TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------------------TEEEEEEEEEEECCS-----
T ss_pred cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc-------------------ccccccccchhhccc-----
Confidence 58899 99999999 9999999999999999999755110 000223556778888
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCC----CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d----~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
..|.+++|+ |++++|++++.+ +.|++||. ++...... .+...+..+.+.++.
T Consensus 117 -------~~v~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~-------------~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 117 -------GPISDISWD--FEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVS-------------GHSQRINACHLKQSR 172 (615)
T ss_dssp -------SCEEEEEEC--TTSSEEEEEECCSSCSEEEEETTT--CCEEEECC-------------SCSSCEEEEEECSSS
T ss_pred -------ccEEEEEEe--CCCCEEEEeccCCCCccEEEEEEC--CCcceeee-------------cCCccEEEEEECCCC
Confidence 889999998 899999999987 78999983 33333221 123345555666666
Q ss_pred c-ccccceeccCcceEEEeccCceeeeeeEeecCCccc---ceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeee
Q 010801 183 A-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIV 256 (501)
Q Consensus 183 ~-~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 256 (501)
. .++.+.. ++.+++|+... .++...+ .+|.. .|.+++|+|+ +++|+++ .|+.|++||+... +....
T Consensus 173 ~~~l~~~~~--d~~v~vwd~~~---~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~- 244 (615)
T 1pgu_A 173 PMRSMTVGD--DGSVVFYQGPP---FKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKY- 244 (615)
T ss_dssp SCEEEEEET--TTEEEEEETTT---BEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEE-
T ss_pred CcEEEEEeC--CCcEEEEeCCC---cceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEE-
Confidence 5 4555543 88999999876 4455555 68888 9999999999 9999998 9999999999844 44443
Q ss_pred ecCCCCC-C---CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc--------------------------
Q 010801 257 DMKPSNM-D---DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS-------------------------- 306 (501)
Q Consensus 257 ~~~~~~~-~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------------------------- 306 (501)
+ . .|...|.+++|+ ++ ++|++++.||.|++||+++++.....
T Consensus 245 ------~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 316 (615)
T 1pgu_A 245 ------IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316 (615)
T ss_dssp ------CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred ------ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE
Confidence 3 4 789999999999 87 99999999999999999865321100
Q ss_pred ---------------cceeecccc------------------------------------------c-------------
Q 010801 307 ---------------ARILRDAAE------------------------------------------S------------- 316 (501)
Q Consensus 307 ---------------~~~~~~~~~------------------------------------------~------------- 316 (501)
...+..|.. .
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~ 396 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLK 396 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEE
T ss_pred CCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEE
Confidence 000000000 0
Q ss_pred ---------------------------------------C-----------------------------CC---------
Q 010801 317 ---------------------------------------H-----------------------------GS--------- 319 (501)
Q Consensus 317 ---------------------------------------~-----------------------------~~--------- 319 (501)
. ..
T Consensus 397 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~ 476 (615)
T 1pgu_A 397 VNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD 476 (615)
T ss_dssp ETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred EEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCC
Confidence 0 00
Q ss_pred --c--ceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeec-cccccccccccCCCCCcceeeEEEEc
Q 010801 320 --K--SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVS 393 (501)
Q Consensus 320 --~--~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s 393 (501)
. ..+.+|...|.+++|+|++++|++++ |+.|++||+.+ ++.+..+.+ |...+ ++++|+
T Consensus 477 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v---------------~~~~~s 540 (615)
T 1pgu_A 477 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI---------------NAISWK 540 (615)
T ss_dssp EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE---------------EEEEEC
T ss_pred ccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce---------------eEEEEc
Confidence 0 22345788999999999999999986 59999999986 777777776 76655 799999
Q ss_pred C----------CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 394 G----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 394 ~----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
| ++++|++++.||.|++||+.++......+.+|...|.+++|+|.. + |++++.|+. .+|+.
T Consensus 541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~------l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--T------LVSSGADACIKRWNV 612 (615)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--E------EEEEETTSCEEEEEE
T ss_pred CccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC--C------eEEecCCceEEEEee
Confidence 9 999999999999999999998866668899999999999999952 2 688999999 99954
Q ss_pred c
Q 010801 463 S 463 (501)
Q Consensus 463 ~ 463 (501)
.
T Consensus 613 ~ 613 (615)
T 1pgu_A 613 V 613 (615)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=276.79 Aligned_cols=288 Identities=14% Similarity=0.183 Sum_probs=219.4
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..+....|+|++++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~h~----------- 139 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL---------------------------QREIDQAHV----------- 139 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE---------------------------EEEETTSSS-----------
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc---------------------------eeeeccccc-----------
Confidence 556666889999999999999999999988654 335667898
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.|++++|+ |++++|++++.|+.|++||+.+++.....
T Consensus 140 -~~v~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--------------------------------------- 177 (420)
T 3vl1_A 140 -SEITKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTL--------------------------------------- 177 (420)
T ss_dssp -SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEE---------------------------------------
T ss_pred -CccEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEE---------------------------------------
Confidence 899999998 78999999999999999999887643322
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc----
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT---- 267 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---- 267 (501)
.+|...|.+++|+|++++|+++ .|+.|++||++ .++....+... ..+.
T Consensus 178 ----------------------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~----~~~~~~v~ 230 (420)
T 3vl1_A 178 ----------------------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRK----ENPHDGVN 230 (420)
T ss_dssp ----------------------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBT----TBTTCCEE
T ss_pred ----------------------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecC----CCCCCCcc
Confidence 5889999999999999999999 99999999999 44444443211 1233
Q ss_pred -----------------cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 268 -----------------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 268 -----------------~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
..+.+++|+|++ ++|++++.||.|++||+++++.. ..+. .+|...|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~------------~~~~~~v 293 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLP------------SKFTCSC 293 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEEC------------CTTSSCE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEcc------------cccCCCc
Confidence 444555567888 99999999999999999887533 1111 2356789
Q ss_pred eEEEEeeCCC-EEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 331 SDIKFANDGQ-HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 331 ~~~~~sp~~~-~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.+++|+|+++ +|++++ |+.|++||+++...++..+..|.... +..+ +.+++++|++++.||.|
T Consensus 294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGALFVSSGFDTSI 358 (420)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEEEEEETTTEEE
T ss_pred eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCEEEEecCCccE
Confidence 9999999998 888886 59999999987445577777743322 1455 45688999999999999
Q ss_pred EEEecCCCCc--------ceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 409 RIFSHGVGSA--------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 409 ~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
++|++..... ....+..|...+..++|+|. +.. -..++..+.++. .+|+..
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~--~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD--DES--NGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC--SSS--SCEEEEEETTTEEEEEESC
T ss_pred EEEeccCCCCCccceeccCccEEccCCcceEEEEEccC--CCC--cceEEEEcCCceEEEEecc
Confidence 9999987422 23457788999999999994 440 000444445566 888543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=260.68 Aligned_cols=245 Identities=14% Similarity=0.261 Sum_probs=201.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++|+|++++|++|+.||.|++||+.+++ ....+++|.
T Consensus 63 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---------------------------~~~~~~~~~-------- 107 (312)
T 4ery_A 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHS-------- 107 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS--------
T ss_pred cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc---------------------------EEEEEcCCC--------
Confidence 588999999999999999999999999999998764 346788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++.....
T Consensus 108 ----~~v~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------------ 145 (312)
T 4ery_A 108 ----NYVFCCNFN--PQSNLIVSGSFDESVRIWDVKTGKCLKTL------------------------------------ 145 (312)
T ss_dssp ----SCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCEEEEEe------------------------------------
Confidence 889999998 78899999999999999999887644332
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..|...|.+++|+|++++|++| .|+.|++||++.. +.+..+ ...+..
T Consensus 146 -------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~------~~~~~~ 193 (312)
T 4ery_A 146 -------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLKTL------IDDDNP 193 (312)
T ss_dssp -------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEE------CCSSCC
T ss_pred -------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeEE------eccCCC
Confidence 6788899999999999999999 9999999999944 443332 345677
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.+..++|+|++ ++|++++.||.|++||+++++.. ..+..|... ...+......+++++|++|+ |
T Consensus 194 ~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 194 PVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCL----KTYTGHKNE----------KYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp CEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEE----EEECSSCCS----------SSCCCEEEECSSSCEEEECCTT
T ss_pred ceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEEecCCc----------eEEEEEEEEeCCCcEEEEECCC
Confidence 89999999999 99999999999999999987543 333331110 01222333346788999886 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe--CCCeEEEEecC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG 414 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~ 414 (501)
+.|++||+++ ++.+..+.+|...+ .+++|+|++++|++++ .|+.|++|+.+
T Consensus 259 g~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 259 NLVYIWNLQT-KEIVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CEEEEEECCC-chhhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999986 88889999988765 7899999999999987 69999999865
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=272.43 Aligned_cols=299 Identities=10% Similarity=0.098 Sum_probs=229.8
Q ss_pred eeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
.....+++|. +.|++++|+ + ++|++++.||.|++|++.+++....
T Consensus 7 ~~~~~~~~h~------------~~i~~~~~~--~--~~l~s~~~dg~i~iw~~~~~~~~~~------------------- 51 (397)
T 1sq9_A 7 ATANAGKAHD------------ADIFSVSAC--N--SFTVSCSGDGYLKVWDNKLLDNENP------------------- 51 (397)
T ss_dssp EEEEESSCSS------------SCEEEEEEC--S--SEEEEEETTSEEEEEESBCCTTCCG-------------------
T ss_pred hhhhhhhhhh------------cCeEEEEec--C--CeEEEEcCCCEEEEEECCCcccccC-------------------
Confidence 3456788999 999999997 4 7999999999999999987651110
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC----C---CEEEEE-cCCeEEE
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD----C---ETFVSA-DDLRINL 243 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~---~~l~~~-~d~~i~i 243 (501)
..+...+ .+|...|.+++|+|+ + ++|+++ .|+.|++
T Consensus 52 -----------------------------------~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 52 -----------------------------------KDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp -----------------------------------GGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred -----------------------------------CCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 0011112 588999999999999 9 999998 9999999
Q ss_pred EECCCCCee----eeeeecCCCCCCCc-----ccceEEEEEe----cCCCcE-EEEEeCCCeEEEEEccC------Cccc
Q 010801 244 WNLEISDQC----FNIVDMKPSNMDDL-----TEVITSAEFH----PIYCNL-LAYSSSRGFVRLVDMRQ------SALC 303 (501)
Q Consensus 244 wd~~~~~~~----~~~~~~~~~~~~~~-----~~~v~~v~~~----p~~~~~-l~~~~~dg~i~~wd~~~------~~~~ 303 (501)
||+...... ... +..| ...|.+++|+ |++ ++ |++++.||.|++||+++ ++..
T Consensus 96 w~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 96 YRITREDETKKVIFEK-------LDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp EEEEECTTTCCEEEEE-------ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred EEccCCccccccccee-------ecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 999844421 222 4556 5899999999 998 88 99999999999999987 4332
Q ss_pred ccc-cceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeec---c---ccccccc
Q 010801 304 DHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI---H---EHLRPKL 375 (501)
Q Consensus 304 ~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~---~---~~~~~~~ 375 (501)
... ...+... ......|...|.+++|+|++ +|++++ ++.|++||+++ ++++..+.. | ...+
T Consensus 168 ~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i--- 236 (397)
T 1sq9_A 168 NWSPTLELQGT------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSI--- 236 (397)
T ss_dssp CCCCEEEEEEE------ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCE---
T ss_pred eccCcceeeee------eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCcc---
Confidence 100 0011100 00002367889999999999 888886 59999999986 788888887 6 5544
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCC---CeEEEEecCCCCcceEEEec-------------ccCcccceeeccCC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEA-------------GKNENRKPILQAAP 439 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~ 439 (501)
.+++|+|++++|++++.| |.|++||+.+++ ....+.. |...+.+++++|
T Consensus 237 ------------~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 301 (397)
T 1sq9_A 237 ------------RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-- 301 (397)
T ss_dssp ------------EEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECS--
T ss_pred ------------ceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECC--
Confidence 799999999999999999 999999999884 4477888 999999999998
Q ss_pred ccccCccceeeeecccce-eecccc--CCccccc------cc---------------CCCeEEEEEccCC----------
Q 010801 440 RARRSSLSNLTRGLYRQA-HENSSS--GHHELSY------NL---------------SSKLLHLAWHPTT---------- 485 (501)
Q Consensus 440 ~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~------~~---------------~~~i~~~~~sp~~---------- 485 (501)
++++ |++++.|+. .+|+.. +...... .| ...|++++|+|++
T Consensus 302 ~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 302 SGET-----LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp SSSE-----EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred CCCE-----EEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 6777 999999999 999543 3333444 56 8999999999998
Q ss_pred CEEEEee-CCeEEEEe
Q 010801 486 NLIACAN-GNSLFFHY 500 (501)
Q Consensus 486 ~~la~~~-~~~~~i~~ 500 (501)
++|++++ ++.+++|+
T Consensus 377 ~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFR 392 (397)
T ss_dssp CEEEEEETTTEEEEEE
T ss_pred ceEEEecCCCcEEEEE
Confidence 7899888 55599996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=292.27 Aligned_cols=259 Identities=19% Similarity=0.300 Sum_probs=203.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|...|++++|+|+|++|++|+.||+|+|||+.+++. ...+.+|.
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~---------------------------~~~~~~h~------- 472 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS---------------------------TRRFVGHT------- 472 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS-------
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc---------------------------eeEEeCCC-------
Confidence 46999999999999999999999999999999987643 36788999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|++|++||...........
T Consensus 473 -----~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~---------------------------------- 511 (694)
T 3dm0_A 473 -----KDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISE---------------------------------- 511 (694)
T ss_dssp -----SCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECS----------------------------------
T ss_pred -----CCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeecc----------------------------------
Confidence 889999998 789999999999999999986543222110
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
...+|...|.+++|+|++ ..+++| .|++|++||++ ..+.... +.+
T Consensus 512 ------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~-------~~~ 559 (694)
T 3dm0_A 512 ------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRST-------LAG 559 (694)
T ss_dssp ------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEE-------ECC
T ss_pred ------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEE-------EcC
Confidence 015788999999999987 578888 99999999998 4444443 678
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|++++|+|++ ++|++++.||.|++||+++++.. ..+.. ...+.+++|+|++.+|+++
T Consensus 560 h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 560 HTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEEEE
T ss_pred CCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEEEE
Confidence 99999999999999 99999999999999999987643 22222 3579999999999999999
Q ss_pred cCCcEEEEEeeCCCCceeEeecccccccccc----ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLC----DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
.++.|++||+++ ++.+..+..+........ ..........+++++|+|+|++|++|+.||.|+||++.
T Consensus 621 ~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 888899999986 776666654322110000 00001112224789999999999999999999999985
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=257.23 Aligned_cols=280 Identities=12% Similarity=0.167 Sum_probs=220.4
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
..++|+||+++ +||+|. |++|+|||+.+++.. ....+.+|.
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-------------------------~~~~~~~~~------------ 67 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 67 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 46889999876 788775 999999999988642 222345666
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|++++|+ +++++|++|+.|++|++|++++++.....
T Consensus 68 ~~V~~v~~~--~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~---------------------------------------- 105 (318)
T 4ggc_A 68 EYISSVAWI--KEGNYLAVGTSSAEVQLWDVQQQKRLRNM---------------------------------------- 105 (318)
T ss_dssp CCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE----------------------------------------
T ss_pred CeEEEEEEC--CCCCEEEEEECCCcEEEeecCCceeEEEe----------------------------------------
Confidence 889999998 89999999999999999999988755432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...+.++.+ ++..++++ .++.+++|+.......... +.+|...+..
T Consensus 106 ---------------------~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 155 (318)
T 4ggc_A 106 ---------------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCG 155 (318)
T ss_dssp ---------------------ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred ---------------------cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE-------EcCccCceEE
Confidence 577777766554 56789998 9999999998855555443 6789999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE---EEc-CC
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL---SRD-YM 348 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~---~~~-~~ 348 (501)
+.+.+++ ++|++++.||.|++||+++++......... ..|...|..+.++|++..++ +++ ++
T Consensus 156 ~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 156 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-------------TQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEE-------------CCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred EEEcCCC-CEEEEEecCcceeEEECCCCcccccceeee-------------cccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 9999999 999999999999999999875432211211 23567899999999776443 333 49
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe--CCCeEEEEecCCCCcceEEEecc
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
.|++||.+. ........ +...+ ..+.|+|+++.+++++ .|+.|+|||+.+++ ...++.+|
T Consensus 222 ~i~lwd~~~-~~~~~~~~-~~~~v---------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-~~~~l~gH 283 (318)
T 4ggc_A 222 HIRIWNVCS-GACLSAVD-AHSQV---------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGH 283 (318)
T ss_dssp EEEEEETTT-CCEEEEEE-CSSCE---------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEECCC
T ss_pred EEEEEeccc-cccccccc-ceeee---------------eeeeecccccceEEEEEcCCCEEEEEECCCCc-EEEEEcCC
Confidence 999999975 55444443 33322 6899999999887655 79999999999885 45889999
Q ss_pred cCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 427 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 427 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.+.|.+++|+| ++++ |++|+.|+. ++|+..
T Consensus 284 ~~~V~~l~~sp--dg~~-----l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 284 TSRVLSLTMSP--DGAT-----VASAAADETLRLWRCF 314 (318)
T ss_dssp SSCEEEEEECT--TSSC-----EEEEETTTEEEEECCS
T ss_pred CCCEEEEEEcC--CCCE-----EEEEecCCeEEEEECC
Confidence 99999999999 7888 999999999 999654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=297.64 Aligned_cols=257 Identities=15% Similarity=0.212 Sum_probs=204.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.||.|+|||+.++ .......+.+|.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-------------------------~~~~~~~l~~h~------- 53 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHE------- 53 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-------------------------EEEEEEEECCCS-------
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-------------------------CCccceeccCCc-------
Confidence 369999999999999999999999999999998854 234567889998
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|++++|++..++++|++|+.||.|++||+.+++....
T Consensus 54 -----~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~------------------------------------ 92 (753)
T 3jro_A 54 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI------------------------------------ 92 (753)
T ss_dssp -----SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEE------------------------------------
T ss_pred -----CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccc------------------------------------
Confidence 899999998544489999999999999999988752221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+ .+|...|.+++|+|+ ++.+++| .||.|++||++........ .+.+
T Consensus 93 ----------------------~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~~~ 143 (753)
T 3jro_A 93 ----------------------AVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDA 143 (753)
T ss_dssp ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EEEC
T ss_pred ----------------------ccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------Eeec
Confidence 112 688999999999999 9999999 9999999999854322221 2567
Q ss_pred cccceEEEEEec-------------CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 266 LTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 266 ~~~~v~~v~~~p-------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
|...|.+++|+| ++ .+|++++.||.|++||++++......... +.+|...|.+
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------------~~~h~~~V~~ 209 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRD 209 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEE
T ss_pred CCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee-------------ecCCCCcEEE
Confidence 889999999999 46 89999999999999999886432111122 3457889999
Q ss_pred EEEeeC---CCEEEEEc-CCcEEEEEeeCCCC----ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 333 IKFAND---GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 333 ~~~sp~---~~~l~~~~-~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
++|+|+ +++|++++ ||.|++||+++... .......|...+ ++++|+|+|++|++|+.
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGG 274 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEECS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEEcC
Confidence 999999 89999886 59999999986211 122222233333 68999999999999999
Q ss_pred CCeEEEEecCCC
Q 010801 405 SNLLRIFSHGVG 416 (501)
Q Consensus 405 dg~i~iwd~~~~ 416 (501)
||.|++|++.++
T Consensus 275 Dg~I~vwd~~~~ 286 (753)
T 3jro_A 275 DNKVTLWKENLE 286 (753)
T ss_dssp SSCEECCBCCSS
T ss_pred CCEEEEEecCCC
Confidence 999999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=266.98 Aligned_cols=249 Identities=14% Similarity=0.245 Sum_probs=198.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...|++++|+|+|++||+|+.||.|++||+.+++. ...+.+|.
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~--------- 176 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK---------------------------LRTMAGHQ--------- 176 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EEEECCCS---------
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE---------------------------EEEecCCC---------
Confidence 788999999999999999999999999999987653 46778898
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|. +..|++++.|+.|++||+.... ....
T Consensus 177 ---~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------------- 212 (401)
T 4aez_A 177 ---ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGT------------------------------------- 212 (401)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEE-------------------------------------
T ss_pred ---CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeE-------------------------------------
Confidence 889999995 4699999999999999998432 2211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
+ .+|...|.+++|+|++++|++| .|+.|++||++. ...... +..|..
T Consensus 213 -----------------------~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~-------~~~~~~ 260 (401)
T 4aez_A 213 -----------------------L-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFT-------KTNHNA 260 (401)
T ss_dssp -----------------------E-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC-SSEEEE-------ECCCSS
T ss_pred -----------------------E-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC-CCccEE-------ecCCcc
Confidence 1 5789999999999999999999 999999999994 333332 567899
Q ss_pred ceEEEEEecCCCcEEEEEe--CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE--
Q 010801 269 VITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-- 344 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~-- 344 (501)
.|.+++|+|++..++++++ .|+.|++||+++++.. ..+.. ...+.+++|+|++++|++
T Consensus 261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVDA--------------GSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEE
T ss_pred eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEeC--------------CCcEEEEEECCCCCeEEEEe
Confidence 9999999998867788766 7999999999987543 33322 467999999999999998
Q ss_pred E-cCCcEEEEEeeCCCCcee--EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 010801 345 R-DYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 345 ~-~~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (501)
| .++.|++||+.+ ++... .+.+|...+ .+++|+|++++|++++.||.|++|++.+++.+..
T Consensus 323 g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 323 GFPDNNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp CTTTCEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred ecCCCcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 4 359999999985 44443 355676654 7899999999999999999999999998865543
Q ss_pred EEec
Q 010801 422 TVEA 425 (501)
Q Consensus 422 ~~~~ 425 (501)
.+..
T Consensus 387 ~~~~ 390 (401)
T 4aez_A 387 PIPI 390 (401)
T ss_dssp ----
T ss_pred cccc
Confidence 3333
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=264.16 Aligned_cols=289 Identities=12% Similarity=0.107 Sum_probs=221.1
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEE-EeeC---CCeEEEEeccccceeeeeccCCCccccccccccc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI-LSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~-s~s~---d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
...+++|. ..|.+++|+ |++..++ +++. |+.|++||+.+++.....
T Consensus 11 ~~~~~~h~------------~~v~~~~~~--p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~---------------- 60 (357)
T 3i2n_A 11 AHIQKGFN------------YTVFDCKWV--PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR---------------- 60 (357)
T ss_dssp EEEEEECS------------SCEEEEEEC--TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----------------
T ss_pred hhhccCCC------------CceEEEEEc--CCCceEEEecCccCCCcEEEEEeCCCCccccee----------------
Confidence 34567898 899999998 7775555 5555 999999999987644321
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC---CCEEEEE-cCCeEEEEE
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWN 245 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~iwd 245 (501)
..+|...|.+++|+|+ +++|++| .|+.|++||
T Consensus 61 --------------------------------------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 61 --------------------------------------------EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp --------------------------------------------EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred --------------------------------------------eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 0367889999999998 6899998 999999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEE------ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCC
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEF------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~------~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
+......... +.+|...|.+++| +|++ ++|++++.||.|++||+++++... ..+..+..
T Consensus 97 ~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~---- 161 (357)
T 3i2n_A 97 LEAPEMPVYS-------VKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQG---- 161 (357)
T ss_dssp TTSCSSCSEE-------ECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCS---EEECCCTT----
T ss_pred CCCCCccEEE-------EEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcc---eeccccCC----
Confidence 9955524443 6789999999965 6788 899999999999999999875221 33332110
Q ss_pred cceeeecccceeEEE----EeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 320 KSFFTEIIASISDIK----FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 320 ~~~~~~h~~~i~~~~----~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
.+...+.+++ |+|++++|++++ ++.|++||+++ ++... ...|...+ .+++|+|
T Consensus 162 -----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~~v---------------~~~~~~~ 219 (357)
T 3i2n_A 162 -----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MALRW-ETNIKNGV---------------CSLEFDR 219 (357)
T ss_dssp -----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEEEE-EEECSSCE---------------EEEEESC
T ss_pred -----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cceee-ecCCCCce---------------EEEEcCC
Confidence 0124788888 788999999986 49999999985 55433 34455443 7999999
Q ss_pred ---CCcEEEEEeCCCeEEEEecCCCCcce----EEEecccCcccceeeccCCccc-cCccceeeeecccce-eeccccC-
Q 010801 395 ---DGLHFATGSYSNLLRIFSHGVGSAGG----ITVEAGKNENRKPILQAAPRAR-RSSLSNLTRGLYRQA-HENSSSG- 464 (501)
Q Consensus 395 ---~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~iw~~~~- 464 (501)
++.+|++++.||.|++||+.+++... ..+.+|...+.+++++| ++. + +++++.|+. .+|+...
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~-----l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP--QNREL-----FLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET--TEEEE-----EEEEETTSEEEEEEEECC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC--CCCcE-----EEEEeCCCcEEEeecCCC
Confidence 99999999999999999998764431 13449999999999999 555 6 899999999 9995441
Q ss_pred --------------------CcccccccCCCeEEEEEccCCCEEE-Eee-CCeEEEEe
Q 010801 465 --------------------HHELSYNLSSKLLHLAWHPTTNLIA-CAN-GNSLFFHY 500 (501)
Q Consensus 465 --------------------~~~~~~~~~~~i~~~~~sp~~~~la-~~~-~~~~~i~~ 500 (501)
.+.....|...|++++|+|++++|+ +++ ++.+++|+
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 2334557889999999999999998 677 55699997
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=260.21 Aligned_cols=251 Identities=14% Similarity=0.098 Sum_probs=191.6
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ +++++|++|+.|++|++||+.++....
T Consensus 7 ~~~~~H~------------~~V~~v~~s--~~g~~lasgs~D~~v~lwd~~~~~~~~----------------------- 49 (316)
T 3bg1_A 7 TVDTSHE------------DMIHDAQMD--YYGTRLATCSSDRSVKIFDVRNGGQIL----------------------- 49 (316)
T ss_dssp -------------------CCEEEEEEC--GGGCEEEEEETTTEEEEEEEETTEEEE-----------------------
T ss_pred eeccccc------------CeEEEeeEc--CCCCEEEEEeCCCeEEEEEecCCCcEE-----------------------
Confidence 3467888 999999998 789999999999999999998764221
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCC-
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD- 250 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~- 250 (501)
+..+ .+|...|++++|++ ++++|++| .|++|++||++...
T Consensus 50 -----------------------------------~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 50 -----------------------------------IADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp -----------------------------------EEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred -----------------------------------EEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 1122 68999999999976 48899998 99999999998432
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
.... .+.+|...|.+++|+|+ + .+|++++.|+.|++||++.+... ... ..+.+|..
T Consensus 94 ~~~~-------~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~----~~~----------~~~~~h~~ 151 (316)
T 3bg1_A 94 EKSH-------EHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW----EVK----------KINNAHTI 151 (316)
T ss_dssp CEEE-------EECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE----EEC----------CBTTSSSS
T ss_pred eEEE-------EccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc----cee----------eeeccccC
Confidence 1222 25789999999999998 6 89999999999999999875311 000 11234677
Q ss_pred ceeEEEEeeC-----------------CCEEEEEc-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceee
Q 010801 329 SISDIKFAND-----------------GQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 329 ~i~~~~~sp~-----------------~~~l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
.+.+++|+|+ +++|++|+ |+.|++||++... +++..+.+|...+ .
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~ 216 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------R 216 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------E
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------E
Confidence 8999999997 46888885 6999999997422 3566777887765 7
Q ss_pred EEEEcCCC----cEEEEEeCCCeEEEEecCCC---CcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 389 ECSVSGDG----LHFATGSYSNLLRIFSHGVG---SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 389 ~~~~s~~~----~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
+++|+|++ ++|++++.||+|+||++.+. ......+..|...+.+++|+| ++.+ |++++.|+. ++|
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~-----las~~~D~~v~lw 289 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI--TANI-----LAVSGGDNKVTLW 289 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT--TTCC-----EEEEESSSCEEEE
T ss_pred EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC--CCCE-----EEEEcCCCeEEEE
Confidence 99999986 89999999999999999763 222345677888888888888 6666 888888888 888
Q ss_pred cc
Q 010801 461 SS 462 (501)
Q Consensus 461 ~~ 462 (501)
+.
T Consensus 290 ~~ 291 (316)
T 3bg1_A 290 KE 291 (316)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=266.76 Aligned_cols=262 Identities=15% Similarity=0.188 Sum_probs=203.0
Q ss_pred cccceEEEEEccC----CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 31 DVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 31 h~~~v~~v~~s~~----g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
|...|++++|+|+ |++||+|+.||.|++||+.+++ ....+.+|.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------------------~~~~~~~~~----- 115 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---------------------------CIKHYVGHG----- 115 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---------------------------EEEEEESCC-----
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---------------------------EeeeecCCC-----
Confidence 6788999999999 6799999999999999988664 346788898
Q ss_pred ccccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.+++|+ | ++.+|++++.||.|++||+.+++.......
T Consensus 116 -------~~i~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------ 156 (366)
T 3k26_A 116 -------NAINELKFH--PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG------------------------------ 156 (366)
T ss_dssp -------SCEEEEEEC--SSCTTEEEEEETTSCEEEEETTTTEEEEEECS------------------------------
T ss_pred -------CcEEEEEEC--CCCCCEEEEEeCCCeEEEEEeecCeEEEEecc------------------------------
Confidence 899999998 6 789999999999999999988765443210
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeec------
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM------ 258 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------ 258 (501)
+.+|...|.+++|+|++++|+++ .|+.|++||++.. +....+..
T Consensus 157 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~ 207 (366)
T 3k26_A 157 ----------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNP 207 (366)
T ss_dssp ----------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCG
T ss_pred ----------------------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC-ccccccceeEEecC
Confidence 14788999999999999999999 9999999999843 22211100
Q ss_pred ---------------CCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCccee
Q 010801 259 ---------------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (501)
Q Consensus 259 ---------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
.......|...|.+++|+ + ++|++++.||.|++||+++..... ..+..+.........+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~ 281 (366)
T 3k26_A 208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVTILGRF 281 (366)
T ss_dssp GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEEEEEEE
T ss_pred CCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccCCcchheeccc
Confidence 000123488999999999 5 799999999999999998865321 1111111111122345
Q ss_pred eecccceeEEEEeeC--CCEEEEEc-CCcEEEEEeeCCCCce----eEeecc--ccccccccccCCCCCcceeeEEEEcC
Q 010801 324 TEIIASISDIKFAND--GQHLLSRD-YMNLKLWDIRMDSTPV----ATFKIH--EHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~--~~~l~~~~-~~~i~lwd~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
.+|...|.+++|+|+ +++|++++ ++.|++||+.. +++. ..+.+| ...+ ++++|+|
T Consensus 282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~ 345 (366)
T 3k26_A 282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAI---------------RQTSFSR 345 (366)
T ss_dssp ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCE---------------EEEEECT
T ss_pred cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCce---------------EEEEeCC
Confidence 678889999999999 99999986 59999999986 5433 356666 3333 7999999
Q ss_pred CCcEEEEEeCCCeEEEEecC
Q 010801 395 DGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~ 414 (501)
++++|++++.||.|++||+.
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999985
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=266.33 Aligned_cols=273 Identities=12% Similarity=0.195 Sum_probs=222.3
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|...|.|++| ++++||+|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~-------- 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT-------- 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEcCCC--------
Confidence 45677999887 79999999999999999998765 346788998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|.+++| ++++|++|+.||+|++||+.+++.....
T Consensus 174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~------------------------------------ 209 (435)
T 1p22_A 174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTL------------------------------------ 209 (435)
T ss_dssp ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEE------------------------------------
T ss_pred ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEEE------------------------------------
Confidence 88999998 5779999999999999999987754432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|.+++|++ ..+++| .|+.|++||+......... ..+.+|..
T Consensus 210 -------------------------~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~~ 257 (435)
T 1p22_A 210 -------------------------IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRA 257 (435)
T ss_dssp -------------------------CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSS
T ss_pred -------------------------cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-----eEecCCCC
Confidence 67889999999974 588888 9999999999854432110 02578999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++| ++ ++|++++.||.|++||+++++.. ..+ .+|...|.++.++ ++++++|+ |
T Consensus 258 ~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~~-------------~~~~~~v~~~~~~--~~~l~~g~~d 315 (435)
T 1p22_A 258 AVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RTL-------------NGHKRGIACLQYR--DRLVVSGSSD 315 (435)
T ss_dssp CEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEE----EEE-------------ECCSSCEEEEEEE--TTEEEEEETT
T ss_pred cEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EEE-------------cCCCCcEEEEEeC--CCEEEEEeCC
Confidence 9999999 55 88999999999999999987543 333 3467889999884 67888875 6
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc--------c
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------G 419 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--------~ 419 (501)
+.|++||+++ ++.+..+.+|...+ .+++| ++++|++|+.||.|++||+.++.. .
T Consensus 316 g~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 316 NTIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred CeEEEEECCC-CCEEEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 9999999986 88899999888765 67777 788999999999999999976531 4
Q ss_pred eEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccC
Q 010801 420 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 420 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
...+.+|...|.++++ ++.. |++|+.|+. .+|+...
T Consensus 378 ~~~~~~h~~~v~~l~~----~~~~-----l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 378 LRTLVEHSGRVFRLQF----DEFQ-----IVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEECCCSSCCCCEEE----CSSC-----EEECCSSSEEEEEC---
T ss_pred eeeccCCCCCeEEEEe----CCCE-----EEEEeCCCEEEEEECCC
Confidence 5788999999999998 4555 899999999 9996553
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=259.73 Aligned_cols=292 Identities=13% Similarity=0.136 Sum_probs=220.7
Q ss_pred ccccceEEEEEccC---CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 30 QDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 30 ~h~~~v~~v~~s~~---g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.|.+.|++++|+|+ |++||+|+.||.|+|||+.+... .....+.+|.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~----- 86 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------TIPKAQQMHT----- 86 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------EEEEEEEECS-----
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------eeEEEecccc-----
Confidence 68999999999999 69999999999999999987322 1336678898
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.+++|+ |++++|++++.||.|++||+.+++....
T Consensus 87 -------~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~---------------------------------- 123 (368)
T 3mmy_A 87 -------GPVLDVCWS--DDGSKVFTASCDKTAKMWDLSSNQAIQI---------------------------------- 123 (368)
T ss_dssp -------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEE----------------------------------
T ss_pred -------CCEEEEEEC--cCCCEEEEEcCCCcEEEEEcCCCCceee----------------------------------
Confidence 899999998 7899999999999999999998764432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEe--cCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN--NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..|...|.+++| +|++.+|+++ .|+.|++||++.. +.... +
T Consensus 124 ----------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~-------~ 167 (368)
T 3mmy_A 124 ----------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-NPMMV-------L 167 (368)
T ss_dssp ----------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-SCSEE-------E
T ss_pred ----------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-cEEEE-------E
Confidence 468889999999 8999999998 9999999999844 44433 2
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE--
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-- 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-- 341 (501)
..+ ..+.++.+.+ ..+++++.++.+++||++...... ..... .+...+..+.+.++...
T Consensus 168 ~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~------------~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 168 QLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF---RRIES------------PLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp ECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE---EECCC------------SCSSCEEEEEEEECTTSCE
T ss_pred ecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchh---hhccc------------cccCCCceEEEcccCCCCC
Confidence 223 3556666654 568888999999999998764321 11111 12245666777666554
Q ss_pred --EEEEc-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 342 --LLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 342 --l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+++++ ++.|++||++... ..+..+.+|...........+. ..+++++|+|++++|++|+.||.|++||+.++
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI---YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE---CCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc---cceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 77765 6999999998521 4566777776521100000000 01279999999999999999999999999987
Q ss_pred CcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 417 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
.....+..|..++.+++|+| ++++ |++++.++. +.|
T Consensus 306 -~~~~~~~~~~~~v~~~~~s~--~g~~-----l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 306 -TKLKTSEQLDQPISACCFNH--NGNI-----FAYASSYDWSKGH 342 (368)
T ss_dssp -EEEEECCCCSSCEEEEEECT--TSSC-----EEEEECCCSTTCG
T ss_pred -cEEEEecCCCCCceEEEECC--CCCe-----EEEEecccccccc
Confidence 44588899999999999999 7787 999988876 444
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=264.08 Aligned_cols=248 Identities=19% Similarity=0.285 Sum_probs=204.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|++|+|+|+|++||+|+.||+|+|||+.+++ .+..+.+|.
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---------------------------~~~~~~~h~-------- 189 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS-------- 189 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---------------------------EEEEEeCCC--------
Confidence 578899999999999999999999999999998765 347788998
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|. +..|++++.|+.+++||........
T Consensus 190 ----~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~-------------------------------------- 223 (420)
T 4gga_A 190 ----ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHV-------------------------------------- 223 (420)
T ss_dssp ----SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE--------------------------------------
T ss_pred ----CceEEEeeC----CCEEEEEeCCCceeEeeecccceee--------------------------------------
Confidence 889998874 5799999999999999987643211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..+ .+|...+..+.|+|++++++++ .|+.+++|+.......... ......|..
T Consensus 224 ---------------------~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~ 277 (420)
T 4gga_A 224 ---------------------ATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQG 277 (420)
T ss_dssp ---------------------EEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSS
T ss_pred ---------------------EEe-cccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCC
Confidence 111 6889999999999999999999 9999999999854322111 012467889
Q ss_pred ceEEEEEecCCCcEEEEE--eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.|.+++|+|.+..+++++ +.|+.|++||+.++... ..+.. ...+.++.|+|+++.+++++
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEE
Confidence 999999999886777765 47999999999988654 33333 35789999999999888653
Q ss_pred ---CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 347 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 347 ---~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
|+.|+|||+.+ ++++.++.+|...+ ++++|+|||++|++|+.|++|+|||+.+...
T Consensus 340 g~~d~~I~iwd~~~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 340 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred ecCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 59999999986 89999999998876 8999999999999999999999999976533
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=260.81 Aligned_cols=253 Identities=12% Similarity=0.127 Sum_probs=200.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|++++|++|+.||.|++||+.+++. .....+.+|.
T Consensus 50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------~~~~~~~~~~-------- 96 (372)
T 1k8k_C 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------KPTLVILRIN-------- 96 (372)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------EEEEECCCCS--------
T ss_pred CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------eeeEEeecCC--------
Confidence 5899999999999999999999999999999987642 2334456777
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +++++|++++.|+.|++||+..+.....
T Consensus 97 ----~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~------------------------------------- 133 (372)
T 1k8k_C 97 ----RAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWV------------------------------------- 133 (372)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEE-------------------------------------
T ss_pred ----CceeEEEEC--CCCCEEEEEeCCCEEEEEEecCCCccee-------------------------------------
Confidence 889999998 7899999999999999999987652111
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC-----------------CCe
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQ 251 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~-----------------~~~ 251 (501)
...+...|...|.+++|+|++++|+++ .|+.|++||++. .+.
T Consensus 134 --------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 134 --------------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp --------------------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred --------------------eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 111125788999999999999999999 999999999641 223
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
.... +..|...|.+++|+|++ ++|++++.||.|++||+++++.. ..+.. |...|.
T Consensus 194 ~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~ 248 (372)
T 1k8k_C 194 LMFE-------SSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----ATLAS-------------ETLPLL 248 (372)
T ss_dssp EEEE-------CCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EEEEC-------------SSCCEE
T ss_pred heEe-------cCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcee----EEEcc-------------CCCCeE
Confidence 3332 56789999999999999 99999999999999999887543 33333 567899
Q ss_pred EEEEeeCCCEEEEEcCCcEEEEEeeCC-CC--ce------------------------------------eEe-eccccc
Q 010801 332 DIKFANDGQHLLSRDYMNLKLWDIRMD-ST--PV------------------------------------ATF-KIHEHL 371 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~~~~i~lwd~~~~-~~--~~------------------------------------~~~-~~~~~~ 371 (501)
+++|+|++++|+++.++.|++|++... ++ .+ ..+ .+|...
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 999999999999998899999999741 11 11 111 133332
Q ss_pred cccccccCCCCCcceeeEEEEc-CCC---cEEEEEeCCCeEEEEecCCCCc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVS-GDG---LHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s-~~~---~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
|++++|. ++| ++|++|+.||.|++|++.+++.
T Consensus 329 ---------------v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 329 ---------------VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp ---------------EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ---------------cceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 3789866 676 9999999999999999987643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=276.04 Aligned_cols=298 Identities=10% Similarity=0.037 Sum_probs=206.2
Q ss_pred ccccceEEEEEccC------CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcc
Q 010801 30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (501)
Q Consensus 30 ~h~~~v~~v~~s~~------g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (501)
.|.+.|++++|+|+ +.+||+|+.||+|+|||+.+++... .. . .....+...+.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~--~~---~-----------~~~~~p~~~l~~h~-- 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV--HV---F-----------KMCEKPSLTLSLAD-- 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS--SE---E-----------ECCCSCSEEECCTT--
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc--cc---c-----------eeecCceEEEEcCC--
Confidence 35788999999997 5799999999999999998764310 00 0 00011234678888
Q ss_pred hhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..|++++|+ ++ ..|++|+.||+|++||+.++....
T Consensus 267 ----------~~v~sv~~s--~~-~~lasgs~DgtV~lWD~~~~~~~~-------------------------------- 301 (524)
T 2j04_B 267 ----------SLITTFDFL--SP-TTVVCGFKNGFVAEFDLTDPEVPS-------------------------------- 301 (524)
T ss_dssp ----------TCEEEEEES--SS-SEEEEEETTSEEEEEETTBCSSCS--------------------------------
T ss_pred ----------CCEEEEEec--CC-CeEEEEeCCCEEEEEECCCCCCce--------------------------------
Confidence 889999997 33 589999999999999998653110
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEE--EecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSI--SNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
.. +.+|...|.++ +|+|++ .+|++| .|++|+|||++. .+....
T Consensus 302 ---------------------------~~-~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~---- 348 (524)
T 2j04_B 302 ---------------------------FY-DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKT---- 348 (524)
T ss_dssp ---------------------------EE-EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCE----
T ss_pred ---------------------------EE-eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCcccc----
Confidence 01 15899999999 578887 899998 999999999983 333322
Q ss_pred CCCCCCcc--cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 260 PSNMDDLT--EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 260 ~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
+.+|. ..|.+++|+|++ +.|++++.|++|++||++++... ..+ .+|...|++++|+|
T Consensus 349 ---~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~----~~l-------------~gH~~~V~sva~Sp 407 (524)
T 2j04_B 349 ---TVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV----HPL-------------VSRETTITAIGVSR 407 (524)
T ss_dssp ---EEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCC----EEE-------------EECSSCEEEEECCS
T ss_pred ---cccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccc----eee-------------ecCCCceEEEEeCC
Confidence 23343 247899999998 89999999999999999886432 222 45788999999999
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+|++|++|+ |++|++||+.. +.+.......... ....+++++|+|+++.+. ... .+.+|+....
T Consensus 408 ~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~ 472 (524)
T 2j04_B 408 LHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVN 472 (524)
T ss_dssp SCCBCEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-ECC--CCCCCC----
T ss_pred CCCeEEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-ccC--CceecccccC
Confidence 999999986 59999999863 3333222111000 000125899999998552 222 2334444311
Q ss_pred CcceEEEecccCcccceeeccCCc-cccCccceeeeecccce-eeccccC
Q 010801 417 SAGGITVEAGKNENRKPILQAAPR-ARRSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
.....++.+|..+|.+++|+|..+ +.. +|+|+.++. +||....
T Consensus 473 g~~~~~l~gh~~~V~~Vafsp~~~~~~~-----lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 473 DVSKAKIDAHGINITCTKWNETSAGGKC-----YAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTE-----EEEECTTSEEEEEECSC
T ss_pred CcceeeecCCCceEEEEECCCCCCccHH-----HHhhccCceEEEEEccc
Confidence 234578999999999999999643 456 999999999 9996553
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=262.52 Aligned_cols=311 Identities=15% Similarity=0.217 Sum_probs=217.8
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+.+|. +.|++++|+ | ++++|++++.||.|++||+.++..........
T Consensus 37 ~~~~~h~------------~~v~~~~~s--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------- 86 (408)
T 4a11_B 37 DVERIHG------------GGINTLDIE--PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------- 86 (408)
T ss_dssp EECCCCS------------SCEEEEEEC--TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----------------
T ss_pred eeeeccC------------CcEEEEEEe--cCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----------------
Confidence 5677898 999999998 7 89999999999999999998875433211000
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCe
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
. .........+|...|.+++|+| ++.+|+++ .|+.|++||+. ..+
T Consensus 87 ------------------------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~ 133 (408)
T 4a11_B 87 ------------------------V--------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN-TLQ 133 (408)
T ss_dssp ------------------------E--------EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT-TTE
T ss_pred ------------------------c--------ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC-CCc
Confidence 0 0000000146899999999999 77789998 99999999999 444
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCC--cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
....+ .+...+.++.++|.+. .++++++.||.|++||+++++.. ..+. +|...
T Consensus 134 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~~~-------------~~~~~ 188 (408)
T 4a11_B 134 TADVF--------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----HILQ-------------GHRQE 188 (408)
T ss_dssp EEEEE--------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----EEEC-------------CCCSC
T ss_pred cceec--------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----eeec-------------CCCCc
Confidence 44432 2567789999998541 49999999999999999887543 3333 36789
Q ss_pred eeEEEEeeCCCE-EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 330 ISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 330 i~~~~~sp~~~~-l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
|.+++|+|++++ |++++ ++.|++||++.....+..+..+..................+++++|+|++++|++++.||.
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 999999999984 77775 5999999998644456665433221110000000001112379999999999999999999
Q ss_pred EEEEecCCCCcceEEEeccc----CcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEE
Q 010801 408 LRIFSHGVGSAGGITVEAGK----NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLA 480 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~ 480 (501)
|++||+.+++.. ..+..+. ........... .... ++.++.++. .+|+. .+......+|...|++++
T Consensus 269 i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 269 MRLWNSSNGENT-LVNYGKVCNNSKKGLKFTVSCG-CSSE-----FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp EEEEETTTCCBC-CCCCCCCCCCCSSCCCCEECCS-SSSC-----EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEECCCCccc-eeccccccccccccceeEEecC-CCce-----EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 999999987543 2221111 11111222221 2222 677777888 99943 345556678999999999
Q ss_pred EccCCCEEEEeeCCe-EEEEe
Q 010801 481 WHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 481 ~sp~~~~la~~~~~~-~~i~~ 500 (501)
|+|++++|++++.|+ +++|+
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEE
T ss_pred EcCCCCEEEEECCCCeEEEEe
Confidence 999999999999554 99997
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=260.60 Aligned_cols=292 Identities=13% Similarity=0.120 Sum_probs=217.3
Q ss_pred ceEEEEEccCCCEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
....++++|+...+ ++|+.||.|+||++...... ......+.+|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~----------- 81 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHT----------- 81 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCS-----------
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCC-----------
Confidence 45568898877544 45788999999998653210 11234578898
Q ss_pred ccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 113 EEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 113 ~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.|++++|+ | ++.+|++++.||+|++||+.++......
T Consensus 82 -~~V~~~~~~--p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~-------------------------------------- 120 (402)
T 2aq5_A 82 -APVLDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPL-------------------------------------- 120 (402)
T ss_dssp -SCEEEEEEC--TTCTTEEEEEETTSEEEEEECCTTCCSSCB--------------------------------------
T ss_pred -CCEEEEEeC--CCCCCEEEEEeCCCeEEEEEccCCCCcccc--------------------------------------
Confidence 899999998 6 8899999999999999999876422110
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.++...+ .+|...|.+++|+|++ .+|++| .|+.|++||++. ++....+ ....|...
T Consensus 121 ---------------~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~-----~~~~~~~~ 178 (402)
T 2aq5_A 121 ---------------REPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTL-----GPDVHPDT 178 (402)
T ss_dssp ---------------CSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEE-----CTTTCCSC
T ss_pred ---------------CCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEE-----ecCCCCCc
Confidence 0122223 6899999999999998 688998 999999999994 4444431 01679999
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc-eeEEEEeeCCCEEEEE---
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS-ISDIKFANDGQHLLSR--- 345 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~~~sp~~~~l~~~--- 345 (501)
|.+++|+|++ ++|++++.||.|++||+++++.. ..+. .+|... +..+.|+|++++|++|
T Consensus 179 v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 179 IYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKD------------RPHEGTRPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp EEEEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEE------------CSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred eEEEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeec------------cCCCCCcceEEEEcCCCcEEEEeccC
Confidence 9999999998 99999999999999999987543 2331 123343 8999999999999998
Q ss_pred -cCCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEE-EEeCCCeEEEEecCCCCcceEE
Q 010801 346 -DYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGIT 422 (501)
Q Consensus 346 -~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~ 422 (501)
.++.|++||++....++.... .+...+ ..++|+|++++|+ +|+.||.|++||+.+++.....
T Consensus 242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp TCCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred CCCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence 359999999986333344433 233322 6899999999986 4557999999999988653455
Q ss_pred Eecc--cCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 423 VEAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 423 ~~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+..+ ..++.+++|+| ++.+ ++++ ++. ++|...
T Consensus 307 l~~~~~~~~v~~~~~sp--~~~~-----~~s~--~~~~~~~~l~ 341 (402)
T 2aq5_A 307 LSMFSSKESQRGMGYMP--KRGL-----EVNK--CEIARFYKLH 341 (402)
T ss_dssp EEEECCSSCCSEEEECC--GGGS-----CGGG--TEEEEEEEEE
T ss_pred ecccccCCcccceEEec--cccc-----ceec--ceeEEEEEcC
Confidence 5554 58999999998 6666 5543 345 888443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=260.26 Aligned_cols=294 Identities=12% Similarity=0.188 Sum_probs=231.6
Q ss_pred eEeeeccCCcchhhccccccccc-eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCccccccccccccc
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEK-INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~-V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (501)
....+++|. .. +.++.+ ++++|++|+.||+|++||+.+++.....
T Consensus 113 ~~~~l~~h~------------~~v~~~~~~----~~~~l~sgs~dg~i~vwd~~~~~~~~~~------------------ 158 (464)
T 3v7d_B 113 QRTTLRGHM------------TSVITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQL------------------ 158 (464)
T ss_dssp EEEEEECCS------------SSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEE------------------
T ss_pred ceEEEcCCC------------CCcEEEEEE----CCCEEEEEcCCCcEEEEECCCCcEEEEE------------------
Confidence 345788898 55 466666 3579999999999999999887754432
Q ss_pred CccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC
Q 010801 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (501)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~ 250 (501)
.+|...|.+++|+|++ .+++| .|++|++||++ .+
T Consensus 159 -------------------------------------------~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~-~~ 193 (464)
T 3v7d_B 159 -------------------------------------------SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK-KG 193 (464)
T ss_dssp -------------------------------------------CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT-TT
T ss_pred -------------------------------------------eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC-CC
Confidence 6899999999999988 88888 99999999999 44
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEeCCCeEEEEEccCCccccccc------ceeecccccCCCcce
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDMRQSALCDHSA------RILRDAAESHGSKSF 322 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~ 322 (501)
+.... +.+|...|.+++|+ +++ ++|++++.||.|++||++++....... ..+......+.....
T Consensus 194 ~~~~~-------~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 194 CCTHV-------FEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEEE-------ECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred cEEEE-------ECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 45443 67899999999999 466 899999999999999998865331100 000000111112234
Q ss_pred eeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
+.+|...+.++ +++++++++++ |+.|++||+++ ++.+..+.+|...+ .+++|+|++++|++
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRI---------------YSTIYDHERKRCIS 327 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEETTTTEEEE
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCE---------------EEEEEcCCCCEEEE
Confidence 56777788776 67899999886 59999999986 88888898887765 79999999999999
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcc-cccccCCCeEEE
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE-LSYNLSSKLLHL 479 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~-~~~~~~~~i~~~ 479 (501)
|+.||.|++||+.++ .....+.+|...+.++.+++ .+ +++++.|+. .+|+...... ....+...+..+
T Consensus 328 g~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~----~~-----l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 397 (464)
T 3v7d_B 328 ASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSD----KF-----LVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397 (464)
T ss_dssp EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECS----SE-----EEEEETTSEEEEEETTTCCEEEEEECTTCCCEE
T ss_pred EeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEcC----CE-----EEEEeCCCcEEEEECCCCceeeeecCCCCccEE
Confidence 999999999999988 45588999999999999864 44 899999999 9996654322 223466678889
Q ss_pred EEccCCCEEEEeeCCeEEEEeC
Q 010801 480 AWHPTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 480 ~~sp~~~~la~~~~~~~~i~~~ 501 (501)
+|+|++++|++++++.+++|+.
T Consensus 398 ~~~~~~~~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 398 TFYVSDNILVSGSENQFNIYNL 419 (464)
T ss_dssp EEEECSSEEEEEETTEEEEEET
T ss_pred EEEeCCCEEEEecCCeEEEEEC
Confidence 9999999999999999999973
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=259.70 Aligned_cols=290 Identities=9% Similarity=0.067 Sum_probs=210.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCC-------CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 114 EKINRVRWCAAPNGSMFILSTND-------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d-------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
-+|++++|+ |++++|++|+.| +.|++|++..+........
T Consensus 15 ~PV~sv~fs--~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~------------------------------- 61 (365)
T 4h5i_A 15 YPAYGAKFL--NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF------------------------------- 61 (365)
T ss_dssp SCEEEEEEE--ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE-------------------------------
T ss_pred CCEEEEEEe--CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee-------------------------------
Confidence 579999998 789999998754 3599999876532111000
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE------------cCCeEEEEECCCCCeeee
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA------------DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~------------~d~~i~iwd~~~~~~~~~ 254 (501)
.......+.+|...|.+++++ +..+++| .|+.+++|++........
T Consensus 62 --------------------~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 62 --------------------HILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp --------------------EEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred --------------------eeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 000001125777788777664 4456554 367899999875544333
Q ss_pred eeecC-CCCCCCcccceEEEEEecCCCcEEEEEe--CCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 255 IVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 255 ~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
..... ......+...+.+++|+||| +++++++ .|++|++||+.+++.. ..+ .|...|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~----~~~--------------~~~~~V~ 180 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEK----FEI--------------ETRGEVK 180 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEE----EEE--------------ECSSCCC
T ss_pred EeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEE----EEe--------------CCCCceE
Confidence 22211 11234456678999999999 8876554 6899999999987543 222 2457899
Q ss_pred EEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeE--eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---
Q 010801 332 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--- 406 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--- 406 (501)
+++|+|||++|++++++.+++|+..+ ++.+.. ...|...+ .+++|+|+++++++++.|+
T Consensus 181 ~v~fspdg~~l~s~s~~~~~~~~~~~-~~~~~~~~~~~~~~~v---------------~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 181 DLHFSTDGKVVAYITGSSLEVISTVT-GSCIARKTDFDKNWSL---------------SKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EEEECTTSSEEEEECSSCEEEEETTT-CCEEEEECCCCTTEEE---------------EEEEEEETTEEEEEEEESSSCC
T ss_pred EEEEccCCceEEeccceeEEEEEecc-CcceeeeecCCCCCCE---------------EEEEEcCCCCEEEEEecCCcce
Confidence 99999999999999888888888775 554433 23344433 7899999999999999887
Q ss_pred -eEEEEecCCCCcc---eEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc--CCccc-ccccCCCeEE
Q 010801 407 -LLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHEL-SYNLSSKLLH 478 (501)
Q Consensus 407 -~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~-~~~~~~~i~~ 478 (501)
.+++|++...... ...+.+|..+|.+++|+| ++++ ||+|+.|+. ++|+.. +.+.. ..+|...|++
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp--dg~~-----lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM--KGEL-----AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT--TSCE-----EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECC--CCCc-----eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 6889998765432 356788999999999999 8888 999999999 999654 33333 4579999999
Q ss_pred EEEccCCCEEEEeeC-CeEEEEe
Q 010801 479 LAWHPTTNLIACANG-NSLFFHY 500 (501)
Q Consensus 479 ~~~sp~~~~la~~~~-~~~~i~~ 500 (501)
++|||||++||+++. +.++||.
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999995 5599996
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=251.28 Aligned_cols=268 Identities=9% Similarity=0.033 Sum_probs=213.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.|++++|+ |++.+|++++.|+.|++|++.++....
T Consensus 12 ~~v~~~~~s--~~~~~l~~~~~d~~v~iw~~~~~~~~~------------------------------------------ 47 (342)
T 1yfq_A 12 DYISDIKII--PSKSLLLITSWDGSLTVYKFDIQAKNV------------------------------------------ 47 (342)
T ss_dssp SCEEEEEEE--GGGTEEEEEETTSEEEEEEEETTTTEE------------------------------------------
T ss_pred CcEEEEEEc--CCCCEEEEEcCCCeEEEEEeCCCCccc------------------------------------------
Confidence 899999998 688999999999999999998765111
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEEC-CCCCeeeeeeecCCCCCCC--ccc
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNL-EISDQCFNIVDMKPSNMDD--LTE 268 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~--~~~ 268 (501)
..... .+|...|.+++|+|+++ +|++| .|+.|++||+ . .+.... +.+ |..
T Consensus 48 ---------------~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~--------~~~~~~~~ 102 (342)
T 1yfq_A 48 ---------------DLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG-SPSFQA--------LTNNEANL 102 (342)
T ss_dssp ---------------EEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS-SSSEEE--------CBSCCCCS
T ss_pred ---------------cceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc-CCceEe--------ccccCCCC
Confidence 01111 47888999999999999 99998 9999999999 7 333322 566 999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccC---------CcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ---------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.|.+++|+| + ++|++++.|+.|++||+++ ++.. ..+ . |...+.+++|+|++
T Consensus 103 ~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~-------------~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 103 GICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNT-------------K-VKNKIFTMDTNSSR 162 (342)
T ss_dssp CEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SSS-------------S-SCCCEEEEEECSSE
T ss_pred ceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCee----eEE-------------e-eCCceEEEEecCCc
Confidence 999999999 7 9999999999999999986 3221 111 1 46789999999988
Q ss_pred CEEEEE-cCCcEEEEEeeC-CCCcee-EeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecCC
Q 010801 340 QHLLSR-DYMNLKLWDIRM-DSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 340 ~~l~~~-~~~~i~lwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 415 (501)
++++ .++.|++||++. ...... ....+...+ .+++|+| +++++++++.||.|++|+++.
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i---------------~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI---------------RDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE---------------EEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCce---------------eEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 5555 569999999975 223222 223333333 7899999 999999999999999999987
Q ss_pred C-----CcceEEEecccC---------cccceeeccCCccccCccceeeeecccce-eecccc--CCccccccc-CCCeE
Q 010801 416 G-----SAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNL-SSKLL 477 (501)
Q Consensus 416 ~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~~~~-~~~i~ 477 (501)
. ......+..|.. .+.+++++| ++++ |++++.++. .+|+.. +.......| ...|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 298 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKF-----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred CCcccccccceeeecccccccccccceeEEEEEEcC--CCCE-----EEEecCCceEEEEcCccHhHhhhhhcccCCCce
Confidence 6 355688888866 999999998 6777 999999999 999544 445556677 89999
Q ss_pred EEEEccCCCEEEEeeCCeE
Q 010801 478 HLAWHPTTNLIACANGNSL 496 (501)
Q Consensus 478 ~~~~sp~~~~la~~~~~~~ 496 (501)
+++ |++++|++++.|+.
T Consensus 299 ~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 299 KIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEE--ECSSEEEEEEECTH
T ss_pred Eec--CCCCeEEEEecCCc
Confidence 999 99999999996653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=258.59 Aligned_cols=261 Identities=13% Similarity=0.153 Sum_probs=170.8
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
+++.+|++++.|++|+|||..++......
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~--------------------------------------------------- 127 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQH--------------------------------------------------- 127 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEE---------------------------------------------------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceee---------------------------------------------------
Confidence 45678999999999999999887644321
Q ss_pred eeeeeeEeecCCcccceEEEEecC--------CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE
Q 010801 205 VHARCQKVYPHAHDFNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~~~--------~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 275 (501)
.+.. +.+|.+.|++++|+| |+++|++| .|++|+|||+........ +..|...|.+++|
T Consensus 128 ----~~~~-~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~~ 194 (393)
T 4gq1_A 128 ----VLGG-KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQF 194 (393)
T ss_dssp ----EECT-TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEEE
T ss_pred ----eecc-cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEEE
Confidence 1111 279999999999998 78999999 999999999985544443 4568889999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccCCcccccccceee--------cccccCCCcceeeecccceeEEEEe-eCCCEEEEEc
Q 010801 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR--------DAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD 346 (501)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~i~~~~~s-p~~~~l~~~~ 346 (501)
+|++.++|++++.||.|++||+++++.......... .............+|...+.++.|+ ||++.|++++
T Consensus 195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence 999745899999999999999998754321111000 0000011111235788899999997 7999999986
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccc------cCCCCCcceeeEEEEcC--CCcEEEEEeCCCeEEEEecCCCC
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD------LYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
|+.+++||+.. ++....+..+...+..... ....... ....|+| ++.++++|+.||.|+|||+.++.
T Consensus 275 ~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 275 KSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSL---LGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp TTSEEEEEEC--------------------CCSCSEEEECSSCCS---SCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred CCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcc---eeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 59999999986 6555555544433211100 0000111 2344444 45577888899999999998774
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEE
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 497 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~ 497 (501)
.. .. ...|..+|++++|||||++||+++++++.
T Consensus 351 ~~-~~----------------------------------------------~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 351 SN-SI----------------------------------------------PIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CC-EE----------------------------------------------EEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EE-EE----------------------------------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 33 11 12344588999999999999999999998
Q ss_pred EEe
Q 010801 498 FHY 500 (501)
Q Consensus 498 i~~ 500 (501)
+|.
T Consensus 384 lvr 386 (393)
T 4gq1_A 384 LTR 386 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=251.58 Aligned_cols=299 Identities=16% Similarity=0.125 Sum_probs=203.4
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ |++++|++++.||.|++||+.++....
T Consensus 5 ~~~~gH~------------~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~----------------------- 47 (351)
T 3f3f_A 5 PFDSGHD------------DLVHDVVYD--FYGRHVATCSSDQHIKVFKLDKDTSNW----------------------- 47 (351)
T ss_dssp CEECCCS------------SCEEEEEEC--SSSSEEEEEETTSEEEEEEECSSSCCE-----------------------
T ss_pred ccCcccc------------cceeEEEEc--CCCCEEEEeeCCCeEEEEECCCCCCcc-----------------------
Confidence 4467898 999999998 789999999999999999998653211
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCC-
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD- 250 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~- 250 (501)
+....+ .+|...|.+++|+| ++++|++| .|+.|++||++...
T Consensus 48 ---------------------------------~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 48 ---------------------------------ELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp ---------------------------------EEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred ---------------------------------eeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 112222 68999999999999 69999999 99999999998542
Q ss_pred -------eeeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcc
Q 010801 251 -------QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (501)
Q Consensus 251 -------~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
.... .+..|...|.+++|+|+ + ++|++++.||.|++||+++++... .+...........
T Consensus 94 ~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 94 ECSGRRWNKLC-------TLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLR----SWTLTSEMKVLSI 161 (351)
T ss_dssp TTSSCSEEEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTT----CCEEEEEEESCSC
T ss_pred cccccCcceee-------eecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhc----ccccccccccccc
Confidence 2222 25679999999999999 8 999999999999999999876542 2221011111111
Q ss_pred eeeecccceeEEEEeeC---CCEEEEEc-CCcEEEEEeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 322 FFTEIIASISDIKFAND---GQHLLSRD-YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 322 ~~~~h~~~i~~~~~sp~---~~~l~~~~-~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
...+|...+.+++|+|+ +.++++++ ++.+.+|+... ++. +..+.+|...+ ++++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~ 225 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPS 225 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCC
Confidence 12356788999999997 88888886 47776666653 443 55666776654 79999999
Q ss_pred C----cEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccc----e-eeccc--cC
Q 010801 396 G----LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ----A-HENSS--SG 464 (501)
Q Consensus 396 ~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~----~-~iw~~--~~ 464 (501)
+ ++|++|+.||.|++||+.++... .....+..........+ .... ++.+..++ . .+|.. ..
T Consensus 226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 226 IGRWYQLIATGCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSA--DVDM-----DAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp SSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------------CCSEEEE
T ss_pred CCCcceEEEEEcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCc--cccc-----ccccccccccceeeeeccccccc
Confidence 8 89999999999999999876333 22222222222222222 1111 22222222 2 33311 12
Q ss_pred CcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 465 HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 465 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
......+|...|++++|+|++++|++++.|+ +++|+
T Consensus 298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 3444567889999999999999999999655 99996
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=251.71 Aligned_cols=214 Identities=16% Similarity=0.189 Sum_probs=171.6
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
....+++|. +.|++++|+ +++++|++++.||.|++|++..+...
T Consensus 3 ~~~~~~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~---------------------- 46 (379)
T 3jrp_A 3 MVVIANAHN------------ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHK---------------------- 46 (379)
T ss_dssp --CCEEECC------------CCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEE----------------------
T ss_pred ccEEecCCc------------ccEEEEEEc--CCCCEEEEEECCCcEEEEecCCCcce----------------------
Confidence 346788999 999999998 78999999999999999999743311
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCC
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~ 249 (501)
....+ .+|...|++++|+++ +++|++| .|+.|++||+...
T Consensus 47 ------------------------------------~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 47 ------------------------------------LIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp ------------------------------------EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred ------------------------------------eeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 12222 689999999999977 8999999 9999999999944
Q ss_pred Ce-eeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec
Q 010801 250 DQ-CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (501)
Q Consensus 250 ~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (501)
.. ... .+..|...|.+++|+|+ + .+|++++.||.|++||+++.... ... .+.+|
T Consensus 90 ~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~-----------~~~~~ 146 (379)
T 3jrp_A 90 RWSQIA-------VHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT----SPI-----------IIDAH 146 (379)
T ss_dssp EEEEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCC----CEE-----------EEECC
T ss_pred ceeEee-------eecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCce----eeE-----------EecCC
Confidence 31 222 25678899999999999 8 99999999999999999876432 111 12346
Q ss_pred ccceeEEEEee-------------CCCEEEEEc-CCcEEEEEeeCCCC---ceeEeeccccccccccccCCCCCcceeeE
Q 010801 327 IASISDIKFAN-------------DGQHLLSRD-YMNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (501)
Q Consensus 327 ~~~i~~~~~sp-------------~~~~l~~~~-~~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (501)
...|.+++|+| ++.+|++++ |+.|++||++.... ....+.+|...+ ++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v---------------~~ 211 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RD 211 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE---------------eE
Confidence 78999999999 689999886 59999999986322 334566676654 79
Q ss_pred EEEcCC---CcEEEEEeCCCeEEEEecCCCC
Q 010801 390 CSVSGD---GLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 390 ~~~s~~---~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
++|+|+ +++|++++.||.|++||+.++.
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 999999 8999999999999999998763
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=257.06 Aligned_cols=266 Identities=16% Similarity=0.246 Sum_probs=203.6
Q ss_pred ccccccceEEEEEccC-CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~-g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.+.|.+.|++++|+|+ +.+||+|+.||.|+||++.+.... ............+.+|.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~-----------------~~~~~~~~~~~~~~~h~----- 181 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK-----------------PEPSGECQPDLRLRGHQ----- 181 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS-----------------CCTTCCCCCSEEEECCS-----
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc-----------------cCccccCCCcEEecCCC-----
Confidence 4569999999999997 789999999999999999863221 00011234556788898
Q ss_pred ccccccccceeEEEEeecCCCC-EEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..|.+++|+ +++. +|++++.||.|++|++..+......
T Consensus 182 -------~~v~~l~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------- 220 (430)
T 2xyi_A 182 -------KEGYGLSWN--PNLNGYLLSASDDHTICLWDINATPKEHRV-------------------------------- 220 (430)
T ss_dssp -------SCCCCEEEC--TTSTTEEEEECTTSCEEEEETTSCCBGGGE--------------------------------
T ss_pred -------CCeEEEEeC--CCCCCeEEEEeCCCeEEEEeCCCCCCCCce--------------------------------
Confidence 889999998 6666 9999999999999999874311000
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCC--eeeeeeecCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPS 261 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~ 261 (501)
......+ .+|...|.+++|+| ++.+|+++ .|+.|++||++... .....
T Consensus 221 ---------------------~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~------ 272 (430)
T 2xyi_A 221 ---------------------IDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT------ 272 (430)
T ss_dssp ---------------------EECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE------
T ss_pred ---------------------eccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE------
Confidence 0111222 68899999999999 67788888 99999999999542 22222
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ- 340 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~- 340 (501)
+..|...|++++|+|++..+|++++.||.|++||+++.... ...+ .+|...|.+++|+|+++
T Consensus 273 -~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~-------------~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 273 -VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSF-------------ESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp -EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEE-------------ECCSSCEEEEEECSSCTT
T ss_pred -eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEe-------------ecCCCCEEEEEECCCCCC
Confidence 45788999999999998458999999999999999874321 1333 34678999999999996
Q ss_pred EEEEEc-CCcEEEEEeeCCC-------------CceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCC
Q 010801 341 HLLSRD-YMNLKLWDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYS 405 (501)
Q Consensus 341 ~l~~~~-~~~i~lwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~d 405 (501)
+|++++ |+.|++||+...+ +.+..+.+|...+ ++++|+|+++ +|++++.|
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETT
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECC
Confidence 567764 6999999997522 4455555666544 7999999999 89999999
Q ss_pred CeEEEEecCCC
Q 010801 406 NLLRIFSHGVG 416 (501)
Q Consensus 406 g~i~iwd~~~~ 416 (501)
|.|+||++...
T Consensus 401 g~i~iw~~~~~ 411 (430)
T 2xyi_A 401 NIMQVWQMAEN 411 (430)
T ss_dssp SEEEEEEECHH
T ss_pred CCEEEeEcccc
Confidence 99999999753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=258.62 Aligned_cols=210 Identities=12% Similarity=0.139 Sum_probs=160.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|++++||+|+.||+|+|||+.+++. ......+.+|.
T Consensus 52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~------------------------~~~~~~~~~~~------- 100 (377)
T 3dwl_C 52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT------------------------WKQTLVLLRLN------- 100 (377)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C------------------------CCCEEECCCCS-------
T ss_pred ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc------------------------eeeeeEecccC-------
Confidence 36899999999999999999999999999999987751 12345677888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ |++++|++++.|+.|++||+.+++...
T Consensus 101 -----~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~------------------------------------- 136 (377)
T 3dwl_C 101 -----RAATFVRWS--PNEDKFAVGSGARVISVCYFEQENDWW------------------------------------- 136 (377)
T ss_dssp -----SCEEEEECC--TTSSCCEEEESSSCEEECCC-----CC-------------------------------------
T ss_pred -----CceEEEEEC--CCCCEEEEEecCCeEEEEEECCcccce-------------------------------------
Confidence 889999998 789999999999999999998765210
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCC-cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC----------------
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---------------- 250 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~---------------- 250 (501)
+.+.+ .. |...|.+++|+|++++|+++ .|+.|++||+....
T Consensus 137 --------------------~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 195 (377)
T 3dwl_C 137 --------------------VSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF 195 (377)
T ss_dssp --------------------CCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCE
T ss_pred --------------------eeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccch
Confidence 11112 34 89999999999999999999 99999999986221
Q ss_pred -eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 251 -QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.... .+ +|...|.+++|+|++ ++|++++.||.|++||+++++........ +.+|...
T Consensus 196 ~~~~~-------~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~ 253 (377)
T 3dwl_C 196 NTVCA-------EY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALIT-------------VKLSQLP 253 (377)
T ss_dssp EEEEE-------CC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCC-------------EECSSSC
T ss_pred hhhhh-------cc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEe-------------ecCCCCc
Confidence 1111 24 789999999999999 99999999999999999987542111122 3446789
Q ss_pred eeEEEEeeCCCEEEEEcCCcEEEEEee
Q 010801 330 ISDIKFANDGQHLLSRDYMNLKLWDIR 356 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~~~~i~lwd~~ 356 (501)
|.+++|+|++++|++++++.+.+|+..
T Consensus 254 v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 254 LRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 999999999999999988677788775
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=253.89 Aligned_cols=253 Identities=13% Similarity=0.087 Sum_probs=191.4
Q ss_pred ccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.|...|.+++|+| ++++|++|+.||.|++||+.+... .......+|.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~~~~~------- 163 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-------------------------QVFAKTDSWD------- 163 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-------------------------EEEECCCCSS-------
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-------------------------EEEeccCCCC-------
Confidence 5899999999999 789999999999999999885421 1222233445
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++|+ +++.+|++++.|+.|++||+. ++....
T Consensus 164 -----~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~-~~~~~~------------------------------------ 199 (383)
T 3ei3_B 164 -----YWYCCVDVS--VSRQMLATGDSTGRLLLLGLD-GHEIFK------------------------------------ 199 (383)
T ss_dssp -----CCEEEEEEE--TTTTEEEEEETTSEEEEEETT-SCEEEE------------------------------------
T ss_pred -----CCeEEEEEC--CCCCEEEEECCCCCEEEEECC-CCEEEE------------------------------------
Confidence 779999998 789999999999999999984 332221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCC---CeeeeeeecCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPSNM 263 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~ 263 (501)
+ .+|...|.+++|+|+++ ++++| .|+.|++||++.. ......
T Consensus 200 ------------------------~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------- 246 (383)
T 3ei3_B 200 ------------------------E-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-------- 246 (383)
T ss_dssp ------------------------E-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--------
T ss_pred ------------------------e-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--------
Confidence 1 57889999999999999 88998 9999999999852 233332
Q ss_pred CCcccceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCC----CcceeeecccceeEEEEeeC
Q 010801 264 DDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG----SKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 264 ~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~i~~~~~sp~ 338 (501)
.+|...|.+++|+| ++ ++|++++.|+.|++||+++++.. ..+..|..... .....-.....+..++|+|+
T Consensus 247 ~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d 321 (383)
T 3ei3_B 247 MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD 321 (383)
T ss_dssp EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC
T ss_pred ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecCC
Confidence 25889999999999 98 99999999999999999987654 33333211100 00000001234555777777
Q ss_pred CCEEEEE-cCCcEEEEEeeCCCCceeEeeccc--cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 339 GQHLLSR-DYMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 339 ~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+++ ++ .|+.|++||+.+ ++.+..+.++. ..+ ..++|+|++++|++|+ ||.|+|||+++
T Consensus 322 g~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 322 DQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccc--ccCCCCeEEEEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 777 44 469999999986 88888888743 322 4679999999999997 99999999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-31 Score=255.49 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=172.8
Q ss_pred cceeEEEEeecCCCCEE-EEeeCCCeEEEEecc--ccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l-~s~s~d~~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|++++|+ |++++| ++++.|+.|++||+. +++......
T Consensus 103 ~~v~~~~~s--~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------ 144 (450)
T 2vdu_B 103 SYIRNLRLT--SDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------ 144 (450)
T ss_dssp CCEEEEEEC--TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred CceEEEEEc--CCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence 679999998 788886 888899999999998 665433220
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
. ..|...|.+++|+|++++|++| .++.|++|++......... ...+.+|...
T Consensus 145 ---------------------~--~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~----~~~~~~h~~~ 197 (450)
T 2vdu_B 145 ---------------------R--FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT----QEPILGHVSM 197 (450)
T ss_dssp ---------------------E--EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC----CCCSEECSSC
T ss_pred ---------------------c--ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc----ceeeecccCc
Confidence 0 2567889999999999999999 9999999999844322100 0135678999
Q ss_pred eEEEEEecC---CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 270 ITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 270 v~~v~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
|.+++|+|+ + ++|++++.|+.|++||+++++.. ..+ +.+|...|.+++|+ ++++|++++
T Consensus 198 v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~~------------~~~h~~~v~~~~~s-d~~~l~s~~ 259 (450)
T 2vdu_B 198 LTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DKW------------LFGHKHFVSSICCG-KDYLLLSAG 259 (450)
T ss_dssp EEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EEE------------CCCCSSCEEEEEEC-STTEEEEEE
T ss_pred eEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----eee------------ecCCCCceEEEEEC-CCCEEEEEe
Confidence 999999999 8 99999999999999999877533 221 13467899999999 999999986
Q ss_pred -CCcEEEEEeeCCCCceeEeecccccccccccc----------CCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEec-
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL----------YNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSH- 413 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~- 413 (501)
|+.|++||+++ ++.+..+..+.......... .....-..+.+++|+|++++|++++ .|+.|+||++
T Consensus 260 ~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~ 338 (450)
T 2vdu_B 260 GDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS 338 (450)
T ss_dssp SSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC
T ss_pred CCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec
Confidence 59999999986 78787776443110000000 0001112347899999999999999 8999999999
Q ss_pred -CCCC--cceEEEecccCcccceeecc
Q 010801 414 -GVGS--AGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 414 -~~~~--~~~~~~~~~~~~v~~~~~~~ 437 (501)
.++. .....+..| ..+.+++++|
T Consensus 339 ~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 339 EKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp SSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred cCCCCceeeccEeccC-CceEEEEecC
Confidence 4332 122334444 4444555544
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=264.80 Aligned_cols=283 Identities=12% Similarity=0.183 Sum_probs=210.3
Q ss_pred eEeee-ccCCcchhhccccccccceeEEEEeecC-CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 93 YKTEF-QSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 93 ~~~~~-~~h~~~~~~~~~~~~~~~V~~v~~~~~~-~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.+..+ ++|. +.|++++|+ | ++.+|++|+.||+|++||+.+......
T Consensus 54 ~~~~~~~~h~------------~~V~~~~~s--~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------ 101 (437)
T 3gre_A 54 LIATLMENEP------------NSITSSAVS--PGETPYLITGSDQGVIKIWNLKEIIVGEV------------------ 101 (437)
T ss_dssp EEEEECTTTT------------SCEEEEEEE--CSSSCEEEEEETTSEEEEEEHHHHHTTCC------------------
T ss_pred EEeeeccCCC------------CceEEEEEC--CCCCCEEEEecCCceEEEeECcccccCcc------------------
Confidence 45667 8898 899999998 7 889999999999999999876321000
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCC-
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI- 248 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~- 248 (501)
.++... ..|...|.+++|+|++++|++| .|+.|++||++.
T Consensus 102 ------------------------------------~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 102 ------------------------------------YSSSLT--YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp ------------------------------------CSCSEE--EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE
T ss_pred ------------------------------------cceeee--ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc
Confidence 001111 2688999999999999999999 999999999951
Q ss_pred -CCeeeeeeecC---CCCCCC--cccceEEEE--EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc
Q 010801 249 -SDQCFNIVDMK---PSNMDD--LTEVITSAE--FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (501)
Q Consensus 249 -~~~~~~~~~~~---~~~~~~--~~~~v~~v~--~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (501)
.++........ ...+.. +...+.++. +++++ .+|++++.||.|++||+++++.. ..+..
T Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~-------- 210 (437)
T 3gre_A 144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERL----QIIEN-------- 210 (437)
T ss_dssp EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEE----EEEEC--------
T ss_pred cCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeee----EEEcc--------
Confidence 22222211000 001112 556677777 55788 99999999999999999987543 33333
Q ss_pred ceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEc----C
Q 010801 321 SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS----G 394 (501)
Q Consensus 321 ~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s----~ 394 (501)
..|...|.+++|+|++++|++|+ |+.|++||+++ ++++..+. .|...+ ++++|+ |
T Consensus 211 ---~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~s~ 271 (437)
T 3gre_A 211 ---SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPI---------------THVEVCQFYGK 271 (437)
T ss_dssp ---CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEE---------------EEEEECTTTCT
T ss_pred ---CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCce---------------EEEEeccccCC
Confidence 11568999999999999999986 59999999986 78777775 454443 688555 5
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCccccc--cc
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY--NL 472 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~--~~ 472 (501)
++++|++|+.||.|++||+.+++ ....+.+|...+..+.++|. ++. + ...... .|
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~-----l---------------~~~~~~~~~~ 328 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGH-CQYAFINSDEQPSMEHFLPI--EKG-----L---------------EELNFCGIRS 328 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTE-EEEEEESSSSCCCGGGGSCB--CSS-----G---------------GGCCCCCCCS
T ss_pred CccEEEEEcCCCcEEEEEcCCCc-EEEEEEcCCCCCccceeccc--ccc-----c---------------ccceeccccc
Confidence 68899999999999999999884 45889999999998888883 332 1 001122 37
Q ss_pred CCCeEEEEEccCCCEEEEee-CCeEEEEeC
Q 010801 473 SSKLLHLAWHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 501 (501)
...|++++|+ ++++|++++ ++.+++|+.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 7789999999 788899888 566999973
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=248.29 Aligned_cols=247 Identities=15% Similarity=0.120 Sum_probs=185.3
Q ss_pred EEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 38 v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
..+.+++++||+|+.||+|++||+.+++.. ..+. . ..|.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---------------------------~~~~--~------------~~v~ 80 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI---------------------------TTIT--T------------PNPR 80 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE---------------------------EEEE--E------------ECCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE---------------------------EEEe--c------------CCce
Confidence 345568899999999999999999987642 2222 2 5688
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
++.|+ |+ +++++.|++|++|+.... +.
T Consensus 81 ~~~~~--~~---~~s~s~D~~i~~w~~~~~------------------------------------------------~~ 107 (343)
T 3lrv_A 81 TGGEH--PA---IISRGPCNRLLLLYPGNQ------------------------------------------------IT 107 (343)
T ss_dssp TTCCC--CS---EEEECSTTEEEEEETTTE------------------------------------------------EE
T ss_pred eeeeC--Cc---eEEecCCCeEEEEEccCc------------------------------------------------eE
Confidence 88887 44 999999999999997653 22
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecC--CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 274 (501)
+|+.... +.++.+..+|...|.+++|+| +++++++| .|++|++||++.. +..... ...+...+.+++
T Consensus 108 ~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~------~~~~~~~i~~~~ 177 (343)
T 3lrv_A 108 ILDSKTN---KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-SQYIVH------SAKSDVEYSSGV 177 (343)
T ss_dssp EEETTTC---CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS-CEEEEE------CCCSSCCCCEEE
T ss_pred EeecCCc---ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEE------ecCCCCceEEEE
Confidence 4444432 223333357788999999999 99999998 9999999999944 444331 234566799999
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd 354 (501)
|+|++ .+|++|+.||.|++||+++++... ..+.. +|...|.+++|+|++.+|++++++.|++||
T Consensus 178 ~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd 241 (343)
T 3lrv_A 178 LHKDS-LLLALYSPDGILDVYNLSSPDQAS---SRFPV------------DEEAKIKEVKFADNGYWMVVECDQTVVCFD 241 (343)
T ss_dssp ECTTS-CEEEEECTTSCEEEEESSCTTSCC---EECCC------------CTTSCEEEEEECTTSSEEEEEESSBEEEEE
T ss_pred ECCCC-CEEEEEcCCCEEEEEECCCCCCCc---cEEec------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Confidence 99999 999999999999999999875321 11111 267899999999999999999888999999
Q ss_pred eeCCCCceeEeec---cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCCc
Q 010801 355 IRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSA 418 (501)
Q Consensus 355 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~ 418 (501)
+++ .+.+..+.. +...+.. .+++|+|+|++|++++. |+.|+||++.....
T Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 242 LRK-DVGTLAYPTYTIPEFKTGT-------------VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp TTS-STTCBSSCCCBC-----CC-------------EEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred cCC-CCcceeecccccccccccc-------------eEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 986 555544443 2222100 25999999999999998 99999999976643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=262.16 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=182.9
Q ss_pred ccccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
...|.+.|++|+|+| ++++|++|+.||+|+|||++++.. ........+.
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-------------------------~~~~~~~~~~----- 209 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-------------------------RVFASSDTIN----- 209 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-------------------------EEEECCSSCS-----
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-------------------------eEEeccCCCC-----
Confidence 346999999999998 789999999999999999876532 1111122223
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..+.+++|+ +++.+|++|+.||.|++||+.+.....
T Consensus 210 -------~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~~~~~~----------------------------------- 245 (435)
T 4e54_B 210 -------IWFCSLDVS--ASSRMVVTGDNVGNVILLNMDGKELWN----------------------------------- 245 (435)
T ss_dssp -------CCCCCEEEE--TTTTEEEEECSSSBEEEEESSSCBCCC-----------------------------------
T ss_pred -------ccEEEEEEC--CCCCEEEEEeCCCcEeeeccCcceeEE-----------------------------------
Confidence 567889998 789999999999999999986533111
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
+.+|...|.+++|+|++. ++++| .|+.|++||++........ ....
T Consensus 246 ---------------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~ 293 (435)
T 4e54_B 246 ---------------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSL 293 (435)
T ss_dssp ---------------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCC
T ss_pred ---------------------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEee
Confidence 158899999999999886 66777 9999999999854332211 1246
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc----ceeeecccceeEEEEeeCCC
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK----SFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~i~~~~~sp~~~ 340 (501)
+|...|++++|+|++ ++|++++.||.|++||+++++.. ..+..|....... .........+..+.+++++.
T Consensus 294 ~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 368 (435)
T 4e54_B 294 PHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN 368 (435)
T ss_dssp BCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTT
T ss_pred eccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccc----eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCC
Confidence 799999999999999 99999999999999999987643 2222211110000 00000112233333444444
Q ss_pred EEEEE-cC-CcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEE-EEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 341 HLLSR-DY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 341 ~l~~~-~~-~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.++++ .+ +.|++||..+ ++.+..+. +|...+ .++ +|+|+|++|++|+ |+.|+||+++++
T Consensus 369 ~~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 369 FKSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp SCCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred eEEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 33332 23 6799999986 77776654 444443 455 7999999999876 789999999987
Q ss_pred Cc
Q 010801 417 SA 418 (501)
Q Consensus 417 ~~ 418 (501)
+.
T Consensus 432 k~ 433 (435)
T 4e54_B 432 RT 433 (435)
T ss_dssp --
T ss_pred ee
Confidence 43
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=247.20 Aligned_cols=279 Identities=14% Similarity=0.156 Sum_probs=213.2
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCC---CCEEEEeeCCCeEEEEeccc-cceeeeeccCCCcccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENT 166 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~---~~~l~s~s~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (501)
.+....+++|. +.|++++|+ |+ +++|++++.||.|++||+.+ +....
T Consensus 29 ~~~~~~~~~h~------------~~v~~~~~~--~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--------------- 79 (368)
T 3mmy_A 29 MKDIEVTSSPD------------DSIGCLSFS--PPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--------------- 79 (368)
T ss_dssp TCCEECSSCCS------------SCEEEEEEC--CTTSSSEEEEEEETTSEEEEEEECTTSCEEE---------------
T ss_pred cceeEeccCCC------------CceEEEEEc--CCCCCceEEEEECCCCcEEEEEcCCCCceeE---------------
Confidence 34556788998 999999998 56 68999999999999999987 33221
Q ss_pred cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEE
Q 010801 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (501)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd 245 (501)
..+ .+|...|.+++|+|++++|+++ .|+.|++||
T Consensus 80 --------------------------------------------~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 80 --------------------------------------------KAQ-QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp --------------------------------------------EEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred --------------------------------------------EEe-ccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 111 5789999999999999999999 999999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEE--ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCccee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
++ .++... +..|...|.+++| +|++ ++|++++.||.|++||+++++.. ..+..
T Consensus 115 ~~-~~~~~~--------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~----------- 169 (368)
T 3mmy_A 115 LS-SNQAIQ--------IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPM----MVLQL----------- 169 (368)
T ss_dssp TT-TTEEEE--------EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCS----EEEEC-----------
T ss_pred cC-CCCcee--------eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEE----EEEec-----------
Confidence 99 444443 3468899999999 8888 99999999999999999987644 34443
Q ss_pred eecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcE----
Q 010801 324 TEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH---- 398 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---- 398 (501)
...+.++.+.+ ..++++ .++.+++|+++................ ...+++.++...
T Consensus 170 ---~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 170 ---PERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQ--------------HRCVAIFKDKQNKPTG 230 (368)
T ss_dssp ---SSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSC--------------EEEEEEEECTTSCEEE
T ss_pred ---CCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCC--------------CceEEEcccCCCCCCe
Confidence 23455665554 455555 569999999985333333222211110 134555554433
Q ss_pred EEEEeCCCeEEEEecCCCC--cceEEEecccC------------cccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 399 FATGSYSNLLRIFSHGVGS--AGGITVEAGKN------------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 399 l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+++++.||.|++|++.... .....+..|.. ++.+++++| ++++ |++++.|+. .+|+..
T Consensus 231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~-----l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP--VHGT-----LATVGSDGRFSFWDKD 303 (368)
T ss_dssp EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT--TTCC-----EEEEETTSCEEEEETT
T ss_pred EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec--CCCE-----EEEEccCCeEEEEECC
Confidence 9999999999999998764 34577788876 799999999 6777 999999999 999554
Q ss_pred --CCcccccccCCCeEEEEEccCCCEEEEeeCC
Q 010801 464 --GHHELSYNLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 464 --~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
+.......|...|.+++|+|++++||+++.+
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 304 ARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp TTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred CCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 3455666889999999999999999999865
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=244.73 Aligned_cols=250 Identities=10% Similarity=0.082 Sum_probs=176.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|||++||+|+.+| ++||++.+++.. ...+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------------~~~~~------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------------MSQEM------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------------------------EEEEC-------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------------------------eeeec-------
Confidence 35899999999999999999998775 789998865321 11222
Q ss_pred ccccccceeEEEEeecCCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+..+++. ++++.+ ++++.|++|++||..+++.....
T Consensus 59 -----~~~~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~---------------------------------- 97 (355)
T 3vu4_A 59 -----RHLSKVRML--HRTNYVAFVTGVKEVVHIWDDVKKQDVSRI---------------------------------- 97 (355)
T ss_dssp -----SCCCEEEEC--TTSSEEEEECSSTTEEEEEETTTTEEEEEE----------------------------------
T ss_pred -----CCeEEEEEc--CCCCEEEEEECCccEEEEEECCCCcEEEEE----------------------------------
Confidence 347778887 555666 56778899999999988755432
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+...|.+++|+++ .++++.++.|++||+....+.+.. +..
T Consensus 98 ----------------------------~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~-------~~~-- 138 (355)
T 3vu4_A 98 ----------------------------KVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITD-------DIR-- 138 (355)
T ss_dssp ----------------------------ECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSC-------CEE--
T ss_pred ----------------------------ECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEE-------ecc--
Confidence 34568999999876 455566889999999954233332 222
Q ss_pred cceEEEEEecCCCcEEEE-EeCCCeEEEEEccCCcccccccceeecccccCCC-cceeeecccceeEEEEeeCCCEEEEE
Q 010801 268 EVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
....+++++ . .+.++ |+.||.|++||+++++.......... .....+ ...+.+|...|.+++|+|+|++|+++
T Consensus 139 -~~~~~~~s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~--~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 -FGGVCEFSN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ--QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp -EEEEEEEET-T-EEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred -CCceEEEEc-c-EEEEeCCCcCcEEEEEECCCCCcccccccccc--ccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 444566777 3 33333 68899999999987642110000000 000011 23456789999999999999999998
Q ss_pred c-CCc-EEEEEeeCCCCceeEee-c-cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 346 D-YMN-LKLWDIRMDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 346 ~-~~~-i~lwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
+ |++ |++||+++ ++.+..+. + |...+ ++++|+|++++|++++.|++|+|||+..+
T Consensus 214 s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 214 SQDGTIIRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ETTCSEEEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred eCCCCEEEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 6 598 99999986 88888887 5 76655 79999999999999999999999999865
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-30 Score=249.69 Aligned_cols=264 Identities=13% Similarity=0.195 Sum_probs=216.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|.+++|+ +++|++|+.||+|++||+.+++ ....+.+|.
T Consensus 157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~-------- 199 (445)
T 2ovr_B 157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE---------------------------CIHTLYGHT-------- 199 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc---------------------------EEEEECCCC--------
Confidence 589999999997 6799999999999999998765 346788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ ++.+++++.|++|++||+.+++.....
T Consensus 200 ----~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~------------------------------------ 235 (445)
T 2ovr_B 200 ----STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVL------------------------------------ 235 (445)
T ss_dssp ----SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEE------------------------------------
T ss_pred ----CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEE------------------------------------
Confidence 889999995 468999999999999999887654432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+|...|.+++| +++.+++| .|+.|++||+++ ...+.. +.+|..
T Consensus 236 -------------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~-------~~~~~~ 280 (445)
T 2ovr_B 236 -------------------------MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLHT-------LQGHTN 280 (445)
T ss_dssp -------------------------ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEEE-------ECCCSS
T ss_pred -------------------------cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeEE-------ecCCCC
Confidence 578889999999 67889998 999999999984 444443 568899
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++| ++ ..+++++.||.|++||+++++.. ..+. +|...+.++.+ ++++|++++ |
T Consensus 281 ~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~-------------~~~~~v~~~~~--~~~~l~~~~~d 338 (445)
T 2ovr_B 281 RVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HTLT-------------GHQSLTSGMEL--KDNILVSGNAD 338 (445)
T ss_dssp CEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEE----EEEC-------------CCCSCEEEEEE--ETTEEEEEETT
T ss_pred ceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EEEc-------------CCcccEEEEEE--eCCEEEEEeCC
Confidence 9999999 66 89999999999999999987543 3333 35667777766 467888885 6
Q ss_pred CcEEEEEeeCCCCceeEeec---cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEE-
Q 010801 348 MNLKLWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV- 423 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 423 (501)
+.|++||+++ ++.+..+.+ |...+ ++++|+ +++|++|+.||.|++||+.+++.+ ..+
T Consensus 339 g~i~vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~-~~~~ 399 (445)
T 2ovr_B 339 STVKIWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTGEFI-RNLV 399 (445)
T ss_dssp SCEEEEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EEEE
T ss_pred CeEEEEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCCcee-eeee
Confidence 9999999986 888888876 33333 678885 679999999999999999998554 555
Q ss_pred ----ecccCcccceeeccCCccccCccceeeeecccce
Q 010801 424 ----EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 424 ----~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
..|...+.+++++| ++.+ +++|+.|+.
T Consensus 400 ~~~~~~~~~~v~~~~~s~--~~~~-----la~~~~dg~ 430 (445)
T 2ovr_B 400 TLESGGSGGVVWRIRASN--TKLV-----CAVGSRNGT 430 (445)
T ss_dssp ECTTGGGTCEEEEEEECS--SEEE-----EEEECSSSS
T ss_pred ccccCCCCceEEEEEecC--CEEE-----EEEcccCCC
Confidence 47888999999998 7777 899998874
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-30 Score=236.86 Aligned_cols=241 Identities=17% Similarity=0.254 Sum_probs=195.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|++++|++|+.||.|++|++..... .+....+.+|.
T Consensus 57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------~~~~~~~~~~~-------- 104 (313)
T 3odt_A 57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------EDPLYTLIGHQ-------- 104 (313)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------SCC-CEECCCS--------
T ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------CCcccchhhcc--------
Confidence 5789999999999999999999999999999876532 22345678888
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|. ++++++++.|+.|++|| .++....
T Consensus 105 ----~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~~------------------------------------- 137 (313)
T 3odt_A 105 ----GNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVYN------------------------------------- 137 (313)
T ss_dssp ----SCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEEE-------------------------------------
T ss_pred ----cCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEEe-------------------------------------
Confidence 889999994 56999999999999999 2222211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+ ..|...+.+++|.| +++.++++ .|+.|++||.. .....+ ...|.
T Consensus 138 -----------------------~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~------~~~~~ 184 (313)
T 3odt_A 138 -----------------------L-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF------SGIHN 184 (313)
T ss_dssp -----------------------E-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE------CSSCS
T ss_pred -----------------------c-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE------eccCc
Confidence 1 57888999999988 89999998 99999999944 333321 23388
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
..+.+++|+|++ . +++++.||.|++||+++++.. ..+. +|...|.+++|+|++++++++.|
T Consensus 185 ~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~l~~~~~d 245 (313)
T 3odt_A 185 DVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVL----RTYE-------------GHESFVYCIKLLPNGDIVSCGED 245 (313)
T ss_dssp SCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEEEEEECTTSCEEEEETT
T ss_pred ccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhh----hhhh-------------cCCceEEEEEEecCCCEEEEecC
Confidence 899999999998 6 999999999999999887543 3333 46789999999999964444457
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+.|++||+++ ++.+..+..|...+ ++++|+|+++ +++++.||.|++|++.+++.
T Consensus 246 g~v~iwd~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 246 RTVRIWSKEN-GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp SEEEEECTTT-CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CEEEEEECCC-CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999999986 88888888887654 7999999998 56799999999999987643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-30 Score=237.62 Aligned_cols=246 Identities=19% Similarity=0.297 Sum_probs=198.3
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++||+|+.||+|+||++.+++. +..+.+|.
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~---------------------------~~~~~~h~-------- 109 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---------------------------LRNMTSHS-------- 109 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCS--------
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee---------------------------EEEecCcc--------
Confidence 5788999999999999999999999999999987753 47788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..+.++.+ ++..+++++.++.+++|+........
T Consensus 110 ----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~-------------------------------------- 143 (318)
T 4ggc_A 110 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-------------------------------------- 143 (318)
T ss_dssp ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE--------------------------------------
T ss_pred ----ceEEEeec----CCCEEEEEecCCceEeeecCCCceeE--------------------------------------
Confidence 66777665 45799999999999999987654221
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..+ .+|...+..+.+++++++++++ .|+.|++||+++....... ......+..
T Consensus 144 ---------------------~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~ 197 (318)
T 4ggc_A 144 ---------------------ATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQG 197 (318)
T ss_dssp ---------------------EEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----SEEECCCCS
T ss_pred ---------------------EEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----eeeecccCC
Confidence 111 5888999999999999999999 9999999999844322111 012456778
Q ss_pred ceEEEEEecCCCcEEE--EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLA--YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~--~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.|.+++++|++...+. +++.++.|++||.+..... ... .+...+..+.|+|+++.+++++
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~--------------~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAV--------------DAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEE--------------ECSSCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----ccc--------------cceeeeeeeeecccccceEEEE
Confidence 8999999998755543 5567899999999876432 111 2356799999999999887642
Q ss_pred ---CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 347 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 347 ---~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.|++||+++ ++++.++.+|...+ ++++|+|++++|++|+.||+|+|||+.+.
T Consensus 260 g~~d~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 260 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EcCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 59999999986 89999999998876 89999999999999999999999999754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-30 Score=247.63 Aligned_cols=256 Identities=14% Similarity=0.147 Sum_probs=201.0
Q ss_pred cccccceEEEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..|.+.|++++|+| ++++||+|+.||.|+|||+.++... ....+....+.+|.
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--------------------~~~~~~~~~~~~h~------ 131 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--------------------LPLREPVITLEGHT------ 131 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS--------------------SCBCSCSEEEECCS------
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc--------------------cccCCceEEecCCC------
Confidence 46999999999999 9999999999999999999877431 00112446788898
Q ss_pred cccccccceeEEEEeecCCC-CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 108 KSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~-~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..|.+++|+ |++ .+|++++.|+.|++||+.+++......
T Consensus 132 ------~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------- 171 (402)
T 2aq5_A 132 ------KRVGIVAWH--PTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-------------------------------- 171 (402)
T ss_dssp ------SCEEEEEEC--SSBTTEEEEEETTSCEEEEETTTTEEEEEEC--------------------------------
T ss_pred ------CeEEEEEEC--cCCCCEEEEEcCCCEEEEEECCCCCccEEEe--------------------------------
Confidence 899999998 676 699999999999999999876443220
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC-C
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-D 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~ 264 (501)
...|...|.+++|+|++++|+++ .|+.|++||++. ++.... + .
T Consensus 172 ---------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~-------~~~ 216 (402)
T 2aq5_A 172 ---------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK-GTVVAE-------KDR 216 (402)
T ss_dssp ---------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEE-------EEC
T ss_pred ---------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC-Cceeee-------ecc
Confidence 04688899999999999999999 999999999994 444443 3 4
Q ss_pred Ccccc-eEEEEEecCCCcEEEEE---eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 265 DLTEV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 265 ~~~~~-v~~v~~~p~~~~~l~~~---~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
.|... +.++.|+|++ ++|+++ +.|+.|++||+++.+... ..... .|...+..++|+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~---~~~~~------------~~~~~v~~~~~s~~~~ 280 (402)
T 2aq5_A 217 PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPL---SLQEL------------DTSSGVLLPFFDPDTN 280 (402)
T ss_dssp SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCS---EEEEC------------CCCSSCEEEEEETTTT
T ss_pred CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCc---eEEec------------cCCCceeEEEEcCCCC
Confidence 56654 8999999998 999998 789999999998865321 12211 2356799999999999
Q ss_pred EEE-EEc-CCcEEEEEeeCCCCc-eeEeeccc--cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 341 HLL-SRD-YMNLKLWDIRMDSTP-VATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 341 ~l~-~~~-~~~i~lwd~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+|+ +++ |+.|++||+.+ +++ +..+..+. ..+ .+++|+|++.++++ .++.+++|++.+
T Consensus 281 ~l~~~g~~dg~i~i~d~~~-~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 281 IVYLCGKGDSSIRYFEITS-EAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEEEETTCSCEEEEEECS-STTCEEEEEEECCSSCC---------------SEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEEEEEcCCCeEEEEEecC-CCcceEeecccccCCcc---------------cceEEeccccccee--cceeEEEEEcCC
Confidence 986 554 69999999986 543 66666554 332 68999999998875 566999999988
Q ss_pred CCcc
Q 010801 416 GSAG 419 (501)
Q Consensus 416 ~~~~ 419 (501)
+...
T Consensus 343 ~~~~ 346 (402)
T 2aq5_A 343 RKCE 346 (402)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-29 Score=246.00 Aligned_cols=263 Identities=15% Similarity=0.239 Sum_probs=214.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++| +++++++|+.||.|++||+.+++.....
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~---------------------------------------- 169 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRIL---------------------------------------- 169 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEE----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEE----------------------------------------
Confidence 67888886 6889999999999999999887654432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...|.+++| ++++|++| .||.|++||+.++ +.... +.+|...|.+
T Consensus 170 ---------------------~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-~~~~~-------~~~h~~~v~~ 218 (435)
T 1p22_A 170 ---------------------TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG-EMLNT-------LIHHCEAVLH 218 (435)
T ss_dssp ---------------------CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC-CEEEE-------ECCCCSCEEE
T ss_pred ---------------------cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-cEEEE-------EcCCCCcEEE
Confidence 689999999998 78899999 9999999999944 44443 5689999999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|++ .++++++.||.|++||++++... ... ..+.+|...|.+++| ++++|++++ |+.|+
T Consensus 219 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~----~~~----------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 219 LRFNN---GMMVTCSKDRSIAVWDMASPTDI----TLR----------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp EECCT---TEEEEEETTSCEEEEECSSSSCC----EEE----------EEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEEcC---CEEEEeeCCCcEEEEeCCCCCCc----eee----------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 99973 58999999999999999876532 111 113457789999998 688999885 59999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
+||+++ ++.+..+.+|...+ .+++| ++++|++|+.||.|++||+.+++ ....+.+|...+.
T Consensus 280 vwd~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~ 340 (435)
T 1p22_A 280 VWNTST-CEFVRTLNGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVR 340 (435)
T ss_dssp EEETTT-CCEEEEEECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEE
T ss_pred EEECCc-CcEEEEEcCCCCcE---------------EEEEe--CCCEEEEEeCCCeEEEEECCCCC-EEEEEeCCcCcEE
Confidence 999986 88888998887765 67777 57899999999999999999884 4588999999999
Q ss_pred ceeeccCCccccCccceeeeecccce-eecccc--C---------CcccccccCCCeEEEEEccCCCEEEEeeC-CeEEE
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G---------HHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF 498 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~---------~~~~~~~~~~~i~~~~~sp~~~~la~~~~-~~~~i 498 (501)
++.+ ++.+ +++|+.|+. .+|+.. . .......|...|++++| ++++|++++. +.+++
T Consensus 341 ~~~~----~~~~-----l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 341 CIRF----DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp EEEC----CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred EEEe----cCCE-----EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 9988 4555 899999999 999443 1 33445688999999999 7888999985 55999
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|+
T Consensus 410 wd 411 (435)
T 1p22_A 410 WD 411 (435)
T ss_dssp EC
T ss_pred EE
Confidence 97
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=251.81 Aligned_cols=248 Identities=14% Similarity=0.159 Sum_probs=169.5
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.+.|++++|+ |++++|++|+.||.|++|++.+++......
T Consensus 28 ~~~V~~v~~s--~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------------------------------- 67 (447)
T 3dw8_B 28 ADIISTVEFN--HSGELLATGDKGGRVVIFQQEQENKIQSHS-------------------------------------- 67 (447)
T ss_dssp GGSEEEEEEC--SSSSEEEEEETTSEEEEEEECC-----CCC--------------------------------------
T ss_pred cCcEEEEEEC--CCCCEEEEEcCCCeEEEEEecCCCCCCccc--------------------------------------
Confidence 3889999998 799999999999999999998765211000
Q ss_pred CcceEEEeccCceeeeeeEeecCCcc------------cceEEEEecCCC--CEEEEE-cCCeEEEEECCCCCeeeeeee
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHD------------FNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVD 257 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~------------~~v~~l~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (501)
.+ ..++...+ .+|. ..|.+++|+|++ ..|+++ .|+.|++||+.........+.
T Consensus 68 ~~-----------~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 135 (447)
T 3dw8_B 68 RG-----------EYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYN 135 (447)
T ss_dssp CC-----------CEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCS
T ss_pred cc-----------ceeEeccc-ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceec
Confidence 00 01122223 5676 889999999998 788888 999999999873221100000
Q ss_pred cCC--------------------------------CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010801 258 MKP--------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 305 (501)
Q Consensus 258 ~~~--------------------------------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 305 (501)
... ....+|...|.+++|+|++ ++|+++ .|+.|++||+++.....
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~- 212 (447)
T 3dw8_B 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSF- 212 (447)
T ss_dssp CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEE-
T ss_pred ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCcee-
Confidence 000 0136799999999999998 999998 79999999998543221
Q ss_pred ccceeecccccCCCcceeeecccceeEEEEeeCC-CEEEEEc-CCcEEEEEeeCCCCc----eeEeeccccccccccccC
Q 010801 306 SARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~~~~-~~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~ 379 (501)
..+.. ....+.+|...|.+++|+|++ ++|++++ |+.|++||+++ ++. +..+.+|...........
T Consensus 213 --~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (447)
T 3dw8_B 213 --NIVDI------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSFFSE 283 (447)
T ss_dssp --EEEEC------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCHHHH
T ss_pred --eeeec------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCccccccccc
Confidence 22111 001235678899999999998 8999886 59999999986 554 677777764100000000
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccC
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
....+.+++|+|++++|++++. +.|++||+.+.......+.+|..
T Consensus 284 ---~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 284 ---IISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp ---HTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred ---cCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 0001279999999999999999 99999999873344566777754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=246.86 Aligned_cols=261 Identities=14% Similarity=0.170 Sum_probs=198.5
Q ss_pred cceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.|++++|+ |+ +.+|++++.||.|++|++.........
T Consensus 129 ~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--------------------------------------- 167 (430)
T 2xyi_A 129 GEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEP--------------------------------------- 167 (430)
T ss_dssp SCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------------------------------------
T ss_pred CcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCc---------------------------------------
Confidence 899999998 54 678999999999999999763210000
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+ ...+...+ .+|...|++++|+|++. +|++| .||.|++|++.........+. ....+.+|...|
T Consensus 168 ~~-----------~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~h~~~v 234 (430)
T 2xyi_A 168 SG-----------ECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTGHTAVV 234 (430)
T ss_dssp TC-----------CCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEEECCCSSCE
T ss_pred cc-----------cCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cceeecCCCCCE
Confidence 00 01122222 68899999999999988 99999 999999999985322111100 011256799999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC-EEEEEc-CC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YM 348 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~~~~-~~ 348 (501)
.+++|+|++..+|++++.||.|++||++++... .....+ ..|...|.+++|+|+++ +|++|+ ++
T Consensus 235 ~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~-------------~~~~~~v~~i~~~p~~~~~l~tg~~dg 300 (430)
T 2xyi_A 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTV-------------DAHTAEVNCLSFNPYSEFILATGSADK 300 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEEE-------------ECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeEe-------------ecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence 999999954489999999999999999976311 001222 34678999999999997 577775 59
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCCCC----------
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS---------- 417 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~---------- 417 (501)
.|++||++....++..+..|...+ ++++|+|+++ +|++++.||.|+|||+....
T Consensus 301 ~v~vwd~~~~~~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 301 TVALWDLRNLKLKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp EEEEEETTCTTSCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred eEEEEeCCCCCCCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc
Confidence 999999986567788888887765 7999999985 79999999999999998632
Q ss_pred ---cceEEEecccCcccceeeccCCccc-cCccceeeeecccce-eeccccC
Q 010801 418 ---AGGITVEAGKNENRKPILQAAPRAR-RSSLSNLTRGLYRQA-HENSSSG 464 (501)
Q Consensus 418 ---~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~iw~~~~ 464 (501)
.+...+.+|...+..++++| ++. + +++++.++. .+|+...
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p--~~~~~-----l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNP--NEPWI-----ICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECS--SSTTE-----EEEEETTSEEEEEEECH
T ss_pred CCcceEEEcCCCCCCceEEEECC--CCCCE-----EEEEECCCCEEEeEccc
Confidence 34567788999999999999 444 5 899999999 9996653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=247.94 Aligned_cols=259 Identities=10% Similarity=0.073 Sum_probs=197.0
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+|+|+ |||+++|+++.|++|+ |...++.
T Consensus 16 ~~v~sv~~S--pDG~~iASas~D~TV~--d~~~~~~-------------------------------------------- 47 (588)
T 2j04_A 16 DWKNNLTWA--RDGTLYLTTFPDISIG--QPKYAKD-------------------------------------------- 47 (588)
T ss_dssp SSSCCEEEC--TTSCEEEECSSSEEEE--EECCCSC--------------------------------------------
T ss_pred ccEEEEEEC--CCCCEEEEEcCCceee--cccccce--------------------------------------------
Confidence 789999998 8999999999999999 5333221
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
+ .+|...|++++|+|+| .++.+.+|+.+ +.... .+ .|...|.++
T Consensus 48 -------------------l-~gh~~~v~~V~FsPdg------~~~~~~~~~~~-~~~~~--------~~-~~~~~V~~v 91 (588)
T 2j04_A 48 -------------------I-NCNSKNLFHVKEFPLE------FENKLDFELAQ-QNGLL--------NS-QPVCYPRVC 91 (588)
T ss_dssp -------------------C-SSBGGGTEEEEEECCC------CCCTTTTSCCC-SSCSS--------TT-SCSCCEEEE
T ss_pred -------------------e-cCCCccEEEEEECCCC------CcceEEEEeCC-CceEe--------ec-CCCCcEEEE
Confidence 1 5899999999999999 46666666544 22221 12 457899999
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 352 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~l 352 (501)
+|+|+| .+|++++.||.|++||... .. ..++ |...- -...+.+++|||||++|++|+ ||+|++
T Consensus 92 awSPdG-~~LAs~s~dg~V~iwd~~~--~l----~~l~-~~~~~--------~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 92 KPSPID-DWMAVLSNNGNVSVFKDNK--ML----TNLD-SKGNL--------SSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp EECSSS-SCEEEEETTSCEEEEETTE--EE----EECC-CSSCS--------TTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred EECCCC-CEEEEEeCCCcEEEEeCCc--ee----eecc-CCCcc--------ccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 999999 9999999999999999543 11 2222 11000 013599999999999999987 599999
Q ss_pred EEeeCCCCc-------eeEe----eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc--c
Q 010801 353 WDIRMDSTP-------VATF----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--G 419 (501)
Q Consensus 353 wd~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~ 419 (501)
||+.. +.. +.++ .+|...+ .+++|+||| +++++.|+.|++|++.++.. .
T Consensus 156 Wd~~~-~~l~~~~~i~l~ti~~~~~gh~~~V---------------~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 156 FSIRK-NSENTPEFYFESSIRLSDAGSKDWV---------------THIVWYEDV--LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp EECCC-CTTTCCCCEEEEEEECSCTTCCCCE---------------EEEEEETTE--EEEEETTCCEEEECCCSSSSCCC
T ss_pred EECCC-CccccccceeeeeeecccccccccE---------------EEEEEcCCc--EEEEeCCCeEEEEECCCCccccc
Confidence 99985 442 5666 3444444 799999999 88899999999999988753 2
Q ss_pred eEEE-ecccCcccceeeccCCccccCccceeeeecccce-eeccccCC-c-ccccccCCCeEEEEE--ccCCCEEEEeeC
Q 010801 420 GITV-EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-H-ELSYNLSSKLLHLAW--HPTTNLIACANG 493 (501)
Q Consensus 420 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~-~-~~~~~~~~~i~~~~~--sp~~~~la~~~~ 493 (501)
..++ .+|...|.+++|+ +.. +++++ ++. ++|+.... . ....+|...|..++| +|++..|+++..
T Consensus 218 ~~tL~~~h~~~V~svaFs----g~~-----LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV----DYK-----VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp EEEEECCCSSCCCCEEEE----TTE-----EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSS
T ss_pred eeeecccccCcEEEEEEE----CCE-----EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcC
Confidence 3567 4888999999998 244 78887 467 99965533 3 333389999999999 999999999998
Q ss_pred CeEEEEe
Q 010801 494 NSLFFHY 500 (501)
Q Consensus 494 ~~~~i~~ 500 (501)
++..+|.
T Consensus 288 dG~klw~ 294 (588)
T 2j04_A 288 TSYKVLL 294 (588)
T ss_dssp CEEEEEE
T ss_pred CCCEEEe
Confidence 8777775
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=245.95 Aligned_cols=266 Identities=9% Similarity=-0.017 Sum_probs=174.6
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
|...+....+++++.+||+|+.|++|+|||..+++.. .......+.||.
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~--------- 136 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH--------- 136 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS---------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC---------
Confidence 3444455555667789999999999999999987542 233456788999
Q ss_pred ccccceeEEEEeec------CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 111 EIEEKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 111 ~~~~~V~~v~~~~~------~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.|++|+|+|. .++++|++++.|++|+|||+.++......
T Consensus 137 ---~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~------------------------------- 182 (393)
T 4gq1_A 137 ---NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG------------------------------- 182 (393)
T ss_dssp ---SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE-------------------------------
T ss_pred ---CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee-------------------------------
Confidence 99999999851 27889999999999999999876533221
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeee-----
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVD----- 257 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~----- 257 (501)
..|...|.+++|+|++. +|++| .|++|++||+++.........
T Consensus 183 ------------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 183 ------------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp ------------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred ------------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 46778999999999875 78888 999999999985433221100
Q ss_pred --------c----CCCCCCCcccceEEEEEe-cCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc----
Q 010801 258 --------M----KPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK---- 320 (501)
Q Consensus 258 --------~----~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---- 320 (501)
. ......+|...+.++.|. |++ +.|++++.|+.+++||+..+.... .+..|.......
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~----~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYN----EISDSTMKLGPKNLLP 307 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSC
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCc----eEeeecCccccEEEcc
Confidence 0 001234678889999997 787 999999999999999998765431 111111000000
Q ss_pred --ceeeecccceeEEEEee--CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCC
Q 010801 321 --SFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 395 (501)
Q Consensus 321 --~~~~~h~~~i~~~~~sp--~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 395 (501)
.....+ .......++| ++.++++|+ |+.|++||+.+ ++....+..|...+ ++++|+||
T Consensus 308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspd 370 (393)
T 4gq1_A 308 NVQGISLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQD 370 (393)
T ss_dssp SEEEECSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTT
T ss_pred cccccccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCC
Confidence 001112 2233344554 344566675 59999999986 77777777777655 79999999
Q ss_pred CcEEEEEeCCCeEEEEecC
Q 010801 396 GLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 396 ~~~l~s~~~dg~i~iwd~~ 414 (501)
|++||+++.+| +.+|.+.
T Consensus 371 G~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 371 GSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SSEEEEEESSE-EEEEEEG
T ss_pred CCEEEEEeCCC-eEEEEEe
Confidence 99999999876 5556543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=237.61 Aligned_cols=280 Identities=8% Similarity=0.049 Sum_probs=210.6
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
....+.+++|+|++.++++++.++.|++||+.+++.. .......+.+|.
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~----------------------~~~~~~~~~~~~--------- 169 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV----------------------RLSPPEKYKKKL--------- 169 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE----------------------EECCCHHHHTTC---------
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe----------------------eecCcccccccC---------
Confidence 4456779999998888888888999999999877542 000011345777
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
+.|.+++|+ +++.++++++.|+.|++||+.+++.....
T Consensus 170 ---~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~------------------------------------- 207 (433)
T 3bws_A 170 ---GFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATV------------------------------------- 207 (433)
T ss_dssp ---CEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEE-------------------------------------
T ss_pred ---CceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEE-------------------------------------
Confidence 889999996 78889999999999999999887644332
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..|...+.+++|+|+++.++ ++ .++.|++||++ .++.... +.. ..
T Consensus 208 ------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~-------~~~-~~ 254 (433)
T 3bws_A 208 ------------------------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRK-------TDK-IG 254 (433)
T ss_dssp ------------------------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEE-------CCC-CS
T ss_pred ------------------------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEE-------ecC-CC
Confidence 46778899999999999885 56 79999999998 4444443 232 34
Q ss_pred ceEEEEEecCCCcEEEEEe--------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 269 VITSAEFHPIYCNLLAYSS--------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
.+.+++|+|++ +.|++++ .||.|++||+++++.. ..+. |...+..++|+|+++
T Consensus 255 ~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 255 LPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTIG--------------PPGNKRHIVSGNTEN 315 (433)
T ss_dssp EEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEEE--------------EEECEEEEEECSSTT
T ss_pred CceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eecc--------------CCCCcceEEECCCCC
Confidence 58999999999 8888887 5889999999887543 2221 245788999999998
Q ss_pred EEE-EEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC--------------
Q 010801 341 HLL-SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-------------- 404 (501)
Q Consensus 341 ~l~-~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-------------- 404 (501)
+++ ++. ++.|++||+.+ ++.+..+..... + .+++|+|++++|++++.
T Consensus 316 ~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKE-KKVQKSIPVFDK-P---------------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEECSSS-E---------------EEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred EEEEEecCCCEEEEEECCC-CcEEEEecCCCC-C---------------CeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 665 444 59999999985 777666653322 2 68999999999888876
Q ss_pred -CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEcc
Q 010801 405 -SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP 483 (501)
Q Consensus 405 -dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp 483 (501)
||.|++||+.+++.. ..+.. ...+.+++|+|
T Consensus 379 ~dg~v~~~d~~~~~~~-~~~~~-----------------------------------------------~~~~~~~~~s~ 410 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVK-EFWEA-----------------------------------------------GNQPTGLDVSP 410 (433)
T ss_dssp SCCEEEEEETTTTEEE-EEEEC-----------------------------------------------SSSEEEEEECT
T ss_pred cceEEEEEECCCCcEE-EEecC-----------------------------------------------CCCCceEEEcC
Confidence 579999999876322 11110 12567999999
Q ss_pred CCCEEEEee--CCeEEEEe
Q 010801 484 TTNLIACAN--GNSLFFHY 500 (501)
Q Consensus 484 ~~~~la~~~--~~~~~i~~ 500 (501)
++++|++++ ++.+++|+
T Consensus 411 dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp TSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEE
Confidence 999988775 56799986
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-29 Score=256.29 Aligned_cols=251 Identities=15% Similarity=0.133 Sum_probs=199.1
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ |++++|++|+.||.|++||+.++...
T Consensus 3 ~~l~gH~------------~~V~~l~~s--~dg~~latg~~dg~I~vwd~~~~~~~------------------------ 44 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHK------------------------ 44 (753)
T ss_dssp -----CC------------CCEEEECCC--SSSCCEEEEETTTEEEEEEEETTEEE------------------------
T ss_pred eecccCc------------ceeEEEEEC--CCCCeEEEEECCCcEEEEecCCCCCc------------------------
Confidence 4578898 999999998 78999999999999999998744321
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC--CCEEEEE-cCCeEEEEECCCCCe
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
+...+ .+|...|++++|+|+ +++|++| .||.|++||+.....
T Consensus 45 ----------------------------------~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 45 ----------------------------------LIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp ----------------------------------EEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ----------------------------------cceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 22222 689999999999988 9999999 999999999994331
Q ss_pred -eeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 252 -CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 252 -~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
... .+.+|...|.+++|+|+ + +++++++.||.|++||++++..... .. +.+|..
T Consensus 90 ~~~~-------~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~--~~-------------~~~~~~ 146 (753)
T 3jro_A 90 SQIA-------VHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--II-------------IDAHAI 146 (753)
T ss_dssp EEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC--EE-------------EECCSS
T ss_pred cccc-------cccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce--eE-------------eecCCC
Confidence 222 25779999999999999 8 9999999999999999988643210 11 234678
Q ss_pred ceeEEEEee-------------CCCEEEEEc-CCcEEEEEeeCCC---CceeEeeccccccccccccCCCCCcceeeEEE
Q 010801 329 SISDIKFAN-------------DGQHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (501)
Q Consensus 329 ~i~~~~~sp-------------~~~~l~~~~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (501)
.|.+++|+| ++++|++|+ ||.|++||++... .....+.+|...+ ++++
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---------------~~l~ 211 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVA 211 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---------------EEEE
Confidence 999999999 588888885 5999999998632 3445666777655 7999
Q ss_pred EcCC---CcEEEEEeCCCeEEEEecCCCCc----ceEEEecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 392 VSGD---GLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 392 ~s~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
|+|+ +++|++|+.||.|++||+.++.. .......|...+.+++++| ++.+ +++|+.|+. .+|+..
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~-----l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNV-----LALSGGDNKVTLWKEN 284 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT--TTCC-----EEEECSSSCEECCBCC
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC--CCCE-----EEEEcCCCEEEEEecC
Confidence 9999 99999999999999999988632 2233456889999999999 6777 999999999 999543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=234.72 Aligned_cols=259 Identities=8% Similarity=0.035 Sum_probs=191.4
Q ss_pred ccccceEEEEEccCCCEE-EEEecCCcEEEEEec--CCcCCCCccchhhhhhhccccccCCCCceeeEeeec--cCCcch
Q 010801 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF 104 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~l-atg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~ 104 (501)
.|.+.|++++|+|+|++| |+|+.||.|+|||+. +++.. ..+. .|.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~---------------------------~~~~~~~~~--- 149 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL---------------------------KLRKRFCFS--- 149 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE---------------------------EEEEEEECS---
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee---------------------------eeeecccCC---
Confidence 466789999999999996 899999999999998 65432 3343 455
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..|.+++|+ |++.+|++++.|+.|++|++.++.....
T Consensus 150 ---------~~v~~~~~s--p~~~~l~~~~~~g~v~~~~~~~~~~~~~-------------------------------- 186 (450)
T 2vdu_B 150 ---------KRPNAISIA--EDDTTVIIADKFGDVYSIDINSIPEEKF-------------------------------- 186 (450)
T ss_dssp ---------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------------
T ss_pred ---------CCceEEEEc--CCCCEEEEEeCCCcEEEEecCCcccccc--------------------------------
Confidence 789999998 7899999999999999999987653210
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC---CCEEEEE-cCCeEEEEECCCCCeeeeeeecCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
+...+ .+|...|.+++|+|+ +++|++| .|+.|++||+... .....+
T Consensus 187 ------------------------~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~---- 236 (450)
T 2vdu_B 187 ------------------------TQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKW---- 236 (450)
T ss_dssp ------------------------CCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEE----
T ss_pred ------------------------cceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeee----
Confidence 00011 578899999999999 9899999 9999999999844 333321
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccc----------cCCC--cceeeeccc
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE----------SHGS--KSFFTEIIA 328 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~h~~ 328 (501)
+.+|...|.+++|+ ++ ++|++++.|+.|++||+++++.. ..+..+.. .+.. .........
T Consensus 237 --~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 237 --LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp --CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred --ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceE
Confidence 56799999999999 88 99999999999999999988644 22322100 0000 000012346
Q ss_pred ceeEEEEeeCCCEEEEEc--CCcEEEEEe--eCCC---CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 329 SISDIKFANDGQHLLSRD--YMNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~--~~~i~lwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
.+..++|+|++++|+++. ++.|++|++ .. + +.+..+..+ ..+ .+++|+|++.++++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLSAHNDEFQVTL 371 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEEEETTEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEEecCCcEEEEE
Confidence 799999999999999875 499999999 43 4 455666666 332 79999996544444
Q ss_pred EeC------CCeEEEEecCCC
Q 010801 402 GSY------SNLLRIFSHGVG 416 (501)
Q Consensus 402 ~~~------dg~i~iwd~~~~ 416 (501)
++. +..|.+|.+...
T Consensus 372 ~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 372 DNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CCTTCCSSCCCSEEEEEEETT
T ss_pred ecccCCCCCCcceEEEEEEcC
Confidence 443 556889987643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=213.15 Aligned_cols=274 Identities=10% Similarity=0.079 Sum_probs=185.0
Q ss_pred ceEEEEEccCCC---EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc--
Q 010801 34 IVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK-- 108 (501)
Q Consensus 34 ~v~~v~~s~~g~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-- 108 (501)
.+.++-|-..|- -++++++ ..|++|+..++. .++...+++.|+....-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~------------------------~~~~~~~~~~~~~~v~~~~~~ 95 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW------------------------QWEKLYTWHFAEVPVLQIVPV 95 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSS------------------------BEEEEEEEECCSSCEEEECCC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc------------------------cceeeEEEeccCceeEEEEEc
Confidence 467777766543 5677775 589999988762 3456666777762111110
Q ss_pred ------------ccccccceeEEEEeecCC----CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 109 ------------SLEIEEKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 109 ------------~~~~~~~V~~v~~~~~~~----~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
.++ ...|..|+++ |+ ++.+++++. .+++|++.+++........
T Consensus 96 ~~~~~~~~~~~~~~~-~~~v~sla~s--pd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g---------------- 154 (356)
T 2w18_A 96 PDVYNLVCVALGNLE-IREIRALFCS--SDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTL---------------- 154 (356)
T ss_dssp TTCCSCEEEEECSSS-EEEEEEECC--------CCEEEEEEEE--EEEEEEETTTEEEEEESSS----------------
T ss_pred Ccccceeeeeecccc-ccceEEEEEC--CCccccccEEEeCCC--eEEEEecCCCcEEEecccC----------------
Confidence 011 1468888887 67 888888874 4888999877765542100
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC---CCCEEEEE-cCCeEEEEECCC
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEI 248 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~-~d~~i~iwd~~~ 248 (501)
-++.|++|++... ++.+..+ ..|...+..++|++ ++..|++| .|++|+|||+.
T Consensus 155 -------------------~d~~V~~~~~s~d--G~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~- 211 (356)
T 2w18_A 155 -------------------SDQQVEVMTFAED--GGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK- 211 (356)
T ss_dssp -------------------TTCEEEEEEECTT--SCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-
T ss_pred -------------------CCCcEEEEEECCC--Cceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-
Confidence 1678999999553 3344443 57888899999998 78999998 99999999999
Q ss_pred CCeeeeeeecCCCCCCCc---ccceEEEEEecCCCcEE------------EEEeCCCeEEEEEccCCcccccccceeecc
Q 010801 249 SDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (501)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l------------~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 313 (501)
.++++++ +.+| ...+.+++|+|+| .++ ++|+.|++|++||..+++.. .++..
T Consensus 212 TGk~l~t-------L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~- 278 (356)
T 2w18_A 212 TGQLLKK-------MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLY- 278 (356)
T ss_dssp TCCEEEE-------EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEE-
T ss_pred CCcEEEE-------EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEe-
Confidence 4555554 3332 3467888999998 776 56788999999999988643 22211
Q ss_pred cccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 314 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.. ..+|...+.+. +.++.++++++ |++|+|||+.+ ++.+.++.+|...+. ..++|
T Consensus 279 ~~-------p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vaf 334 (356)
T 2w18_A 279 CL-------PPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKW 334 (356)
T ss_dssp CC-------CTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEE
T ss_pred ec-------cCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEE
Confidence 00 01333444333 33488899886 69999999997 999999998876431 35899
Q ss_pred cCCCcEEEEEeCCCeEEEEec
Q 010801 393 SGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+|||++|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-27 Score=222.88 Aligned_cols=310 Identities=11% Similarity=0.063 Sum_probs=217.0
Q ss_pred cccccceEEEEEccCCCEE-EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
+.+...+.+++|+|+|++| ++++.|+.|++||+.+++. ...+..|
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAG------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECS-------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------------EEEEECC-------
Confidence 3455679999999999987 6677899999999987653 2334333
Q ss_pred cccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..+.+++|+ |++++|++++ .++.|++||+.+++.....
T Consensus 74 ------~~v~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~--------------------------------- 112 (391)
T 1l0q_A 74 ------SSPQGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTV--------------------------------- 112 (391)
T ss_dssp ------SSEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------------------------
T ss_pred ------CCccceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEE---------------------------------
Confidence 468999998 7888876554 6799999999987754432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+...+.+++|+|+++.+ +++ .++.|++||+. .++.... +.
T Consensus 113 -----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~-------~~ 155 (391)
T 1l0q_A 113 -----------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINT-------VS 155 (391)
T ss_dssp -----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEE-------EE
T ss_pred -----------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEE-------Ee
Confidence 223467899999999977 567 89999999998 4454443 22
Q ss_pred CcccceEEEEEecCCCcEE-EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+ ..+.+++|+|++ +.| ++++.++.|++||+++++.. ..+.. ...+.+++|+|++++|+
T Consensus 156 ~~-~~~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~ 215 (391)
T 1l0q_A 156 VG-RSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAY 215 (391)
T ss_dssp CC-SSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEE
T ss_pred cC-CCcceEEECCCC-CEEEEEeCCCCEEEEEECCCCeEE----EEEec--------------CCCccceEECCCCCEEE
Confidence 22 456899999999 665 67788999999999887543 22222 35789999999999888
Q ss_pred EEc----CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE-EEEeCCCeEEEEecCCCCc
Q 010801 344 SRD----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 344 ~~~----~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~ 418 (501)
+++ ++.|++||+++ ++.+..+..+... .+++|+|++++| ++++.|+.|++||+.++ .
T Consensus 216 ~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~ 277 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATN-T 277 (391)
T ss_dssp EEEECSSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-E
T ss_pred EEecCcCCCcEEEEECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCC-c
Confidence 764 49999999986 7777777766543 589999999877 67788999999999987 4
Q ss_pred ceEEEecccCccc---ceeecc------------CCcccc---Cccceeeeecccce-eeccccCCcccccccCCCeEEE
Q 010801 419 GGITVEAGKNENR---KPILQA------------APRARR---SSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHL 479 (501)
Q Consensus 419 ~~~~~~~~~~~v~---~~~~~~------------~~~~~~---~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~ 479 (501)
+...+..+..+.. .+.+.| ...... .....+...+.+.. .+|+.+..... .... ...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~--~~~~--~~~ 353 (391)
T 1l0q_A 278 ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS--KKQN--PTH 353 (391)
T ss_dssp EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE--CSSS--CEE
T ss_pred EEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc--CcCC--CeE
Confidence 4466766655432 112111 100000 00012555566666 78865432221 1122 236
Q ss_pred EEccCCCEEEEee
Q 010801 480 AWHPTTNLIACAN 492 (501)
Q Consensus 480 ~~sp~~~~la~~~ 492 (501)
.|+|+|.+.+...
T Consensus 354 ~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 354 TYSETGIYTVRLT 366 (391)
T ss_dssp CCSSCEEEEEEEE
T ss_pred EeCCCceEEEEEE
Confidence 7899998877554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=227.62 Aligned_cols=262 Identities=10% Similarity=0.038 Sum_probs=182.8
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
+++.++++|+.||+|++||+.+++.....
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~--------------------------------------------------- 74 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTI--------------------------------------------------- 74 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEE---------------------------------------------------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEE---------------------------------------------------
Confidence 46789999999999999999988754432
Q ss_pred eeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC-----CCCcccceEEEEEec-
Q 010801 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-----MDDLTEVITSAEFHP- 277 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~v~~~p- 277 (501)
. ...|.++.|+|+ ++++ .|++|++|+... . ...++..... ..+|...|.+++|+|
T Consensus 75 ----------~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 75 ----------T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-Q--ITILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp ----------E--EECCCTTCCCCS---EEEECSTTEEEEEETTT-E--EEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred ----------e--cCCceeeeeCCc---eEEecCCCeEEEEEccC-c--eEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 1 234556677777 7777 999999998762 1 1111111111 235668899999999
Q ss_pred -CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEe
Q 010801 278 -IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 355 (501)
Q Consensus 278 -~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~ 355 (501)
++ ++|++++.||.|++||+++++.. ..... .|...+.+++|+|+|++|++|+ |+.|++||+
T Consensus 137 ~~~-~~l~s~s~dg~i~~wd~~~~~~~----~~~~~------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 137 VNT-EYFIWADNRGTIGFQSYEDDSQY----IVHSA------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp --C-CEEEEEETTCCEEEEESSSSCEE----EEECC------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred CCC-CEEEEEeCCCcEEEEECCCCcEE----EEEec------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 98 99999999999999999987542 22222 1345799999999999999985 699999999
Q ss_pred eCCCCce-eEeec-cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc--eEEEecccCccc
Q 010801 356 RMDSTPV-ATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEAGKNENR 431 (501)
Q Consensus 356 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~ 431 (501)
++ ++.+ ..+.. |...+ ++++|+|++.+|++++. +.|++||+.+++.. ...+..|...+.
T Consensus 200 ~~-~~~~~~~~~~~h~~~v---------------~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (343)
T 3lrv_A 200 SS-PDQASSRFPVDEEAKI---------------KEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTG 262 (343)
T ss_dssp SC-TTSCCEECCCCTTSCE---------------EEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred CC-CCCCccEEeccCCCCE---------------EEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccccccccccc
Confidence 97 6655 77777 77665 79999999999999994 59999999987543 122223444554
Q ss_pred --ceeeccCCccccCccceeeeecc-cce-eeccccCCcccccccCCCeEEEEEcc---CCCEEEEeeCC-eEEE
Q 010801 432 --KPILQAAPRARRSSLSNLTRGLY-RQA-HENSSSGHHELSYNLSSKLLHLAWHP---TTNLIACANGN-SLFF 498 (501)
Q Consensus 432 --~~~~~~~~~~~~~~~~~l~~~~~-~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp---~~~~la~~~~~-~~~i 498 (501)
+++|+| ++++ |++++. ++. .+|+.......... .++..++|+| +.+.|++++.+ .+.+
T Consensus 263 ~~~~~~~~--~g~~-----l~~~s~~d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 263 TVTYDIDD--SGKN-----MIAYSNESNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CEEEEECT--TSSE-----EEEEETTTTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred ceEEEECC--CCCE-----EEEecCCCCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEecCCceEE
Confidence 488888 7777 888877 777 99955322111100 4566778887 77777776643 3444
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=221.16 Aligned_cols=262 Identities=10% Similarity=0.115 Sum_probs=192.5
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~ 124 (501)
.++++++.|+.|++||+.+++. ...+.+|. .+.+++|+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~---------------------------~~~~~~~~-------------~~~~~~~s-- 40 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV---------------------------TATIPVGS-------------NPMGAVIS-- 40 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE---------------------------EEEEECSS-------------SEEEEEEC--
T ss_pred EEEEEcCCCCEEEEEECCCCeE---------------------------EEEeecCC-------------CcceEEEC--
Confidence 4678889999999999987653 35566664 48999998
Q ss_pred CCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccC
Q 010801 125 PNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (501)
Q Consensus 125 ~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 203 (501)
|+++++ ++++.|+.|++||+.+++.....
T Consensus 41 ~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-------------------------------------------------- 70 (391)
T 1l0q_A 41 PDGTKVYVANAHSNDVSIIDTATNNVIATV-------------------------------------------------- 70 (391)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEE--------------------------------------------------
T ss_pred CCCCEEEEECCCCCeEEEEECCCCeEEEEE--------------------------------------------------
Confidence 788876 56668999999999887755432
Q ss_pred ceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
.. ...+.+++|+|+++.+++ + .++.|++||+. .++....+ . +...+.+++|+|++ +
T Consensus 71 -----------~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~~-------~-~~~~~~~~~~s~dg-~ 128 (391)
T 1l0q_A 71 -----------PA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTV-------K-TGKSPLGLALSPDG-K 128 (391)
T ss_dssp -----------EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------E-CSSSEEEEEECTTS-S
T ss_pred -----------EC-CCCccceEECCCCCEEEEEECCCCEEEEEECC-CCeEEEEE-------e-CCCCcceEEECCCC-C
Confidence 22 238899999999998755 5 78999999999 44444432 2 33467999999999 6
Q ss_pred EE-EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-EEc-CCcEEEEEeeCC
Q 010801 282 LL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMD 358 (501)
Q Consensus 282 ~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~~~-~~~i~lwd~~~~ 358 (501)
.| ++++.++.|++||+.+++.. ..+.. ...+..++|+|++++|+ ++. ++.|++||+++
T Consensus 129 ~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~- 189 (391)
T 1l0q_A 129 KLYVTNNGDKTVSVINTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT- 189 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-
T ss_pred EEEEEeCCCCEEEEEECCCCcEE----EEEec--------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-
Confidence 55 78888999999999887543 33333 24578999999999884 554 49999999986
Q ss_pred CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe---CCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
++.+..+..+... .+++|+|++++|++++ .++.|++||+.+++. ...+..+.. +..+++
T Consensus 190 ~~~~~~~~~~~~~----------------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~-~~~~~~ 251 (391)
T 1l0q_A 190 NSVIDTVKVEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPVGPD-PAGIAV 251 (391)
T ss_dssp TEEEEEEECSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-EEEEECCSS-EEEEEE
T ss_pred CeEEEEEecCCCc----------------cceEECCCCCEEEEEecCcCCCcEEEEECCCCeE-EEEEecCCC-ccEEEE
Confidence 6666666543322 6899999999999888 689999999998743 355555543 456667
Q ss_pred ccCCccccCccceeeeecccce-eecccc
Q 010801 436 QAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
+| +++. .+++++.++. .+|+..
T Consensus 252 s~--dg~~----l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 252 TP--DGKK----VYVALSFXNTVSVIDTA 274 (391)
T ss_dssp CT--TSSE----EEEEETTTTEEEEEETT
T ss_pred cc--CCCE----EEEEcCCCCEEEEEECC
Confidence 66 4443 0356666666 777443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=227.40 Aligned_cols=321 Identities=8% Similarity=0.049 Sum_probs=232.1
Q ss_pred EEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeE
Q 010801 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (501)
Q Consensus 39 ~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 118 (501)
+|+|++.++++++.|++|.+||..+++. +..+..+. . +..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------------~~~i~~g~------------~-~~~ 183 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY------------A-VHI 183 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECST------------T-EEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------------EEEEecCc------------c-cce
Confidence 4899999999999999999999987754 35555332 3 788
Q ss_pred EEEeecCCCCEEEEeeCCCeEEEEec--cccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcce
Q 010801 119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (501)
Q Consensus 119 v~~~~~~~~~~l~s~s~d~~i~lw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (501)
++|+ |++++|++++.|++|++||+ .+++.....
T Consensus 184 v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i------------------------------------------- 218 (543)
T 1nir_A 184 SRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEI------------------------------------------- 218 (543)
T ss_dssp EEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEE-------------------------------------------
T ss_pred EEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEE-------------------------------------------
Confidence 9997 89999999999999999999 665543322
Q ss_pred EEEeccCceeeeeeEeecCCcccceEEEEecC----CCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCC---Cc-
Q 010801 197 KIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DL- 266 (501)
Q Consensus 197 ~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~- 266 (501)
.+...+..++|+| +|++++++ .+++|.+||.. ..++++.+........ .|
T Consensus 219 -------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 219 -------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp -------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEES
T ss_pred -------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCcccccc
Confidence 1344678999999 99999887 58999999998 4555555432211111 13
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~- 345 (501)
...+.++.++|+++.++++...++.|.+||..+.+... ...+. +...+..+.|+|+|++++++
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~--------------~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG--------------AAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE--------------CCSSCCCEEECTTSCEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec--------------cCcCccCceECCCCCEEEEEe
Confidence 23789999999885777888889999999998764321 01111 23567889999999987755
Q ss_pred c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEE-EcCC-CcEEEEEe-CCCeEEEEecCCC-----
Q 010801 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGVG----- 416 (501)
Q Consensus 346 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~-~~~l~s~~-~dg~i~iwd~~~~----- 416 (501)
. +++|.+||+.+ ++++..+.....+-+. .... ++|+ +.+++++. .|++|.+||+++.
T Consensus 343 ~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g-------------~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 343 NNSNKVAVIDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp GGGTEEEEEETTT-TEEEEEEECSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred cCCCeEEEEECCC-CeEEEeeccCCCCCCC-------------CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 3 49999999986 7888777642211000 1122 4677 66777775 6899999999882
Q ss_pred -CcceEEEecccCcccceeeccCCccccCccceeeeec-------ccce-eeccccCCcc--cc---------cccCCCe
Q 010801 417 -SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-------YRQA-HENSSSGHHE--LS---------YNLSSKL 476 (501)
Q Consensus 417 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-------~~~~-~iw~~~~~~~--~~---------~~~~~~i 476 (501)
-...+++++|...+..+.++| +++. |.+++ .++. .+|+...... .. .++...+
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~p--dg~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~ 481 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 481 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCT--TCCE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEE
T ss_pred cCeEEEEEEcCCCCceEEEcCC--CCCc-----EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCce
Confidence 245689999999999999998 7777 77776 2456 9995542211 11 3557789
Q ss_pred EEEEEccCCCEEEEee------CCeEEEEeC
Q 010801 477 LHLAWHPTTNLIACAN------GNSLFFHYA 501 (501)
Q Consensus 477 ~~~~~sp~~~~la~~~------~~~~~i~~~ 501 (501)
.+++|+|+|+.|.++. ++.|.||++
T Consensus 482 ~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 482 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred EeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 9999999999988763 467999873
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=240.75 Aligned_cols=333 Identities=9% Similarity=0.072 Sum_probs=225.0
Q ss_pred ccceEEEEEccCCCEEEEEec-CC-----cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCC--c-
Q 010801 32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE--P- 102 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~- 102 (501)
...|++++|||||++||+++. |+ .|++||+.+++.. ..+..+. +
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~ 88 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG 88 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence 457999999999999999998 88 8999999887542 1111111 0
Q ss_pred ---------chhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEecccc---ceeeeeccCCCcccccccccccc
Q 010801 103 ---------EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 103 ---------~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.......+.....|.+++|+ |||++|++++. +.|++||+.++ ....+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~S--pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l------------------ 147 (741)
T 2ecf_A 89 TETLSDEEKARRERQRIAAMTGIVDYQWS--PDAQRLLFPLG-GELYLYDLKQEGKAAVRQL------------------ 147 (741)
T ss_dssp ------------------CCEESCCCEEC--TTSSEEEEEET-TEEEEEESSSCSTTSCCBC------------------
T ss_pred cccccchhhhhhhhhhhccccCcceeEEC--CCCCEEEEEeC-CcEEEEECCCCCcceEEEc------------------
Confidence 00000000000347899998 89999999886 89999999887 42221
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 250 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~ 250 (501)
..|...+.+++|+|||+.|+.+.++.|++||+. .+
T Consensus 148 --------------------------------------------~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g 182 (741)
T 2ecf_A 148 --------------------------------------------THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SG 182 (741)
T ss_dssp --------------------------------------------CCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TT
T ss_pred --------------------------------------------ccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CC
Confidence 456677999999999999999866799999998 44
Q ss_pred eeeeeeecCCCCCCCccc----------------ceEEEEEecCCCcEEEEEeCCC------------------------
Q 010801 251 QCFNIVDMKPSNMDDLTE----------------VITSAEFHPIYCNLLAYSSSRG------------------------ 290 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~----------------~v~~v~~~p~~~~~l~~~~~dg------------------------ 290 (501)
....+ ...+.. .+.+++|+||| +.|++++.|+
T Consensus 183 ~~~~~-------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 183 RQMQL-------TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEEEC-------CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred CEEEe-------ccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 44432 111211 14789999999 8888887765
Q ss_pred ---------eEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc------CCcEEEEE
Q 010801 291 ---------FVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------YMNLKLWD 354 (501)
Q Consensus 291 ---------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~------~~~i~lwd 354 (501)
.|.+||+.+ ++.. .+... ..|...+..++| |||++|+.+. +..|++||
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence 788888877 6432 11100 124567999999 9999998642 26799999
Q ss_pred eeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccce-
Q 010801 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP- 433 (501)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~- 433 (501)
+.+ ++....+..+.... +..+..++|+|||+++++++.||.++||.++.... ...+..+...+..+
T Consensus 319 ~~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~ 385 (741)
T 2ecf_A 319 LAS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELL 385 (741)
T ss_dssp TTT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEE
T ss_pred CCC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEe
Confidence 986 66666555444210 00014789999999999999999888887763223 57777887777776
Q ss_pred eeccCCccccCccceeeeecccc--e-eecccc--CCcccccccCCCeEEEEEccCCCEEEEeeCC-----eEEEEe
Q 010801 434 ILQAAPRARRSSLSNLTRGLYRQ--A-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGN-----SLFFHY 500 (501)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~--~-~iw~~~--~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-----~~~i~~ 500 (501)
.++| +++. + +++++.++ . .+|... +...........+..++|+|||++|+....+ .+++++
T Consensus 386 ~~s~--dg~~--l--~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 386 AVDE--KAGL--A--YFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp EEET--TTTE--E--EEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred EEeC--CCCE--E--EEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 4888 5554 0 34555554 5 899432 2222222236678899999999998876532 366654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=223.10 Aligned_cols=301 Identities=12% Similarity=0.100 Sum_probs=213.7
Q ss_pred ccceEEEEEccCCC-EEEEEe----cCC----cEEEEEe--cCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC
Q 010801 32 VDIVSAIEFDKTGD-YLAVGD----RGG----RVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (501)
Q Consensus 32 ~~~v~~v~~s~~g~-~latg~----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (501)
...+...+|++.|. ++++|+ .|| +|++||+ .+++.+ ....+.+|
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-------------------------~~~~~~~~ 116 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-------------------------AQNSYKVN 116 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-------------------------EEEEEEEC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-------------------------eeeEEEcC
Confidence 45788888988874 666776 467 8999999 776531 23457778
Q ss_pred CcchhhccccccccceeEEEEee------------cCCCCEEEEeeCC------CeEEEEeccccceeeeeccCCCcccc
Q 010801 101 EPEFDYLKSLEIEEKINRVRWCA------------APNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVS 162 (501)
Q Consensus 101 ~~~~~~~~~~~~~~~V~~v~~~~------------~~~~~~l~s~s~d------~~i~lw~~~~~~~~~~~~~~~~~~~~ 162 (501)
. ..+..+++.+ .+.+..++.++.+ +.|++||+.++....+
T Consensus 117 ~------------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l---------- 174 (415)
T 2hqs_A 117 K------------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVV---------- 174 (415)
T ss_dssp G------------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEE----------
T ss_pred h------------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEE----------
Confidence 7 4455554431 0125667766654 7999999875432221
Q ss_pred cccccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCC--
Q 010801 163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-- 239 (501)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~-- 239 (501)
.+|...+.+++|+|+|+.|+++ .++
T Consensus 175 ----------------------------------------------------~~~~~~v~~~~~Spdg~~la~~s~~~~~ 202 (415)
T 2hqs_A 175 ----------------------------------------------------HRSPQPLMSPAWSPDGSKLAYVTFESGR 202 (415)
T ss_dssp ----------------------------------------------------EEESSCEEEEEECTTSSEEEEEECTTSS
T ss_pred ----------------------------------------------------eCCCCcceeeEEcCCCCEEEEEEecCCC
Confidence 4677889999999999999987 664
Q ss_pred -eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCCe--EEEEEccCCcccccccceeecccc
Q 010801 240 -RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGF--VRLVDMRQSALCDHSARILRDAAE 315 (501)
Q Consensus 240 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~ 315 (501)
.|++||+.+ ++... +..|...+.+++|+|+| +.|+ +++.++. |++||+.+++. ..+.
T Consensus 203 ~~i~~~d~~t-g~~~~--------l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~---- 263 (415)
T 2hqs_A 203 SALVIQTLAN-GAVRQ--------VASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQI-----RQVT---- 263 (415)
T ss_dssp CEEEEEETTT-CCEEE--------EECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-----EECC----
T ss_pred cEEEEEECCC-CcEEE--------eecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCE-----EeCc----
Confidence 999999994 44333 34566789999999999 7666 6666554 99999987643 1222
Q ss_pred cCCCcceeeecccceeEEEEeeCCCEEEEEcC--C--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEE
Q 010801 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (501)
Q Consensus 316 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (501)
.|...+..++|+|||++|+++++ + .|++||+.+ ++ ...+..+...+ ..++
T Consensus 264 ---------~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~---------------~~~~ 317 (415)
T 2hqs_A 264 ---------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQN---------------QDAD 317 (415)
T ss_dssp ---------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEE---------------EEEE
T ss_pred ---------CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcc---------------cCeE
Confidence 24567899999999999887653 4 677778764 33 33444343322 6899
Q ss_pred EcCCCcEEEEEeCC---CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccc---e-eecccc-
Q 010801 392 VSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ---A-HENSSS- 463 (501)
Q Consensus 392 ~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~iw~~~- 463 (501)
|+|||++|++++.+ ..|++||+.+++. ..+..+. .+..++|+| +++. |++++.++ . .+|+..
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~sp--dg~~-----l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAP--NGTM-----VIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECT--TSSE-----EEEEEEETTEEEEEEEETTS
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcC--CCCE-----EEEEEcCCCccEEEEEECCC
Confidence 99999999988764 5899999998744 4455554 788999998 7777 77777766 3 555443
Q ss_pred CCcccccccCCCeEEEEEccCCC
Q 010801 464 GHHELSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 464 ~~~~~~~~~~~~i~~~~~sp~~~ 486 (501)
+....+..+...|.+++|+|...
T Consensus 388 ~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 388 RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCEEECCCSSSEEEEEEECCCCC
T ss_pred CcEEEeeCCCCCCcCCccccccc
Confidence 34556678889999999999754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=218.02 Aligned_cols=239 Identities=9% Similarity=0.075 Sum_probs=187.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|.+++|+|+++++++++.|+.|++||+.+++. ...+..|.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~---------------------------~~~~~~~~-------- 211 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY---------------------------KATVDLTG-------- 211 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECSS--------
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---------------------------EEEEcCCC--------
Confidence 5778999999999999999999999999999986643 35566777
Q ss_pred cccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..+.+++|+ ++++.++++ +.|+.|++||+.+++.....
T Consensus 212 ----~~~~~~~~~--~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------- 250 (433)
T 3bws_A 212 ----KWSKILLYD--PIRDLVYCSNWISEDISVIDRKTKLEIRKT----------------------------------- 250 (433)
T ss_dssp ----SSEEEEEEE--TTTTEEEEEETTTTEEEEEETTTTEEEEEC-----------------------------------
T ss_pred ----CCeeEEEEc--CCCCEEEEEecCCCcEEEEECCCCcEEEEe-----------------------------------
Confidence 789999998 788877555 48999999999887654332
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--------CCeEEEEECCCCCeeeeeeecC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--------d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
.+...+.+++|+|+++.++++ . |+.|++||+. .++....
T Consensus 251 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~---- 298 (433)
T 3bws_A 251 ---------------------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDT---- 298 (433)
T ss_dssp ---------------------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEE----
T ss_pred ---------------------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEee----
Confidence 223458899999999998886 3 7799999998 4444442
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
..|...+.+++|+|++..++++++.|+.|++||+.+++.. ..+. +...+.+++|+|+|
T Consensus 299 ----~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~--------------~~~~~~~~~~s~dg 356 (433)
T 3bws_A 299 ----IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIP--------------VFDKPNTIALSPDG 356 (433)
T ss_dssp ----EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEE--------------CSSSEEEEEECTTS
T ss_pred ----ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEec--------------CCCCCCeEEEcCCC
Confidence 2355678999999998345677789999999999977543 2222 24678999999999
Q ss_pred CEEEEEcC----------------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 340 QHLLSRDY----------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 340 ~~l~~~~~----------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
++|+++.. |.|++||+.+ ++.+..+..+... .+++|+|+|++|++++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISD 419 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEE
Confidence 98887642 4899999986 7777777654332 6899999999998877
Q ss_pred C-CCeEEEEecCC
Q 010801 404 Y-SNLLRIFSHGV 415 (501)
Q Consensus 404 ~-dg~i~iwd~~~ 415 (501)
. |+.|++|+++.
T Consensus 420 ~~d~~i~v~~~~~ 432 (433)
T 3bws_A 420 FLDHQIRVYRRDG 432 (433)
T ss_dssp TTTTEEEEEEETT
T ss_pred CCCCeEEEEEecC
Confidence 5 99999999863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=204.22 Aligned_cols=269 Identities=10% Similarity=0.048 Sum_probs=192.0
Q ss_pred eeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
..+.+|. +.|++++|+ |++++|++|+.++ +++|++..++.....
T Consensus 13 ~~~~~h~------------~~V~~v~fs--~dg~~la~g~~~~-~~iw~~~~~~~~~~~--------------------- 56 (355)
T 3vu4_A 13 VPENHVS------------NPVTDYEFN--QDQSCLILSTLKS-FEIYNVHPVAHIMSQ--------------------- 56 (355)
T ss_dssp ------C------------CCCCEEEEC--TTSSEEEEECSSE-EEEEEETTEEEEEEE---------------------
T ss_pred cccccCC------------CceEEEEEC--CCCCEEEEEcCCE-EEEEecCCcceeeee---------------------
Confidence 4557787 889999998 8999999888765 789998876533211
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~ 252 (501)
+...+..+++.++++.++ +| .|++|++||.. .++.
T Consensus 57 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~-~~~~ 93 (355)
T 3vu4_A 57 ------------------------------------------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV-KKQD 93 (355)
T ss_dssp ------------------------------------------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETT-TTEE
T ss_pred ------------------------------------------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECC-CCcE
Confidence 112466788888888775 45 78999999998 4444
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCC-cccccccceeecccccCCCcceeeeccccee
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
+.. +. +...|.+++++++. ++++ .|+.|++||+.++ +.. ..+.. +..
T Consensus 94 ~~~-------~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~----~~~~~----------------~~~ 141 (355)
T 3vu4_A 94 VSR-------IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRI----TDDIR----------------FGG 141 (355)
T ss_dssp EEE-------EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBS----SCCEE----------------EEE
T ss_pred EEE-------EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceee----EEecc----------------CCc
Confidence 443 22 55689999999864 4443 4789999999886 332 22211 233
Q ss_pred EEEEeeCCCEEEE--Ec-CCcEEEEEeeCCCC---------------c-eeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 332 DIKFANDGQHLLS--RD-YMNLKLWDIRMDST---------------P-VATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 332 ~~~~sp~~~~l~~--~~-~~~i~lwd~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.+++++ .+++. |+ +|.|++||+++ ++ + +..+.+|...+ ++++|
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v---------------~~~~~ 203 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAILGKGVLIKAHTNPI---------------KMVRL 203 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCE---------------EEEEE
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccCcccEEEEccCCce---------------EEEEE
Confidence 455666 56665 33 59999999985 33 2 67788888765 79999
Q ss_pred cCCCcEEEEEeCCCe-EEEEecCCCCcceEEEe-c-ccCcccceeeccCCccccCccceeeeecccce-eeccccCCcc-
Q 010801 393 SGDGLHFATGSYSNL-LRIFSHGVGSAGGITVE-A-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE- 467 (501)
Q Consensus 393 s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~- 467 (501)
+|+|++|++|+.||+ |+|||+.+++.+ ..+. + |...|.+++|+| ++++ |++++.|+. ++|+......
T Consensus 204 s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~--~~~~-----l~s~s~d~~v~iw~~~~~~~~ 275 (355)
T 3vu4_A 204 NRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWST--DGSK-----LAVVSDKWTLHVFEIFNDQDN 275 (355)
T ss_dssp CTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECT--TSCE-----EEEEETTCEEEEEESSCCSCC
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECC--CCCE-----EEEEECCCEEEEEEccCCCCc
Confidence 999999999999998 999999998554 6676 5 999999999999 7777 999999999 9995542210
Q ss_pred ---cc---------------------cccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 468 ---LS---------------------YNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 468 ---~~---------------------~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.. .........++|+|+++.|++++.|+ +++|.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 276 KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 00 01112336799999999999998555 66664
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-25 Score=234.65 Aligned_cols=366 Identities=9% Similarity=0.044 Sum_probs=245.7
Q ss_pred cccccceEEEEEccCCCEEEEEecC------CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (501)
..|...+.+++|||||++||+++.+ ..|++|++.+++. ..+..|.
T Consensus 49 t~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~----------------------------~~lt~~~- 99 (1045)
T 1k32_A 49 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI----------------------------KRITYFS- 99 (1045)
T ss_dssp ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE----------------------------EECCCCC-
T ss_pred eeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe----------------------------EEcccCC-
Confidence 3588899999999999999988643 3799999887643 5567777
Q ss_pred chhhccccccccce-------eEEEEeecCCCCEEEEeeCC------CeEEEEeccccceeeeeccCCCcccccccc---
Q 010801 103 EFDYLKSLEIEEKI-------NRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENT--- 166 (501)
Q Consensus 103 ~~~~~~~~~~~~~V-------~~v~~~~~~~~~~l~s~s~d------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~--- 166 (501)
..+ ..++|+ |||+.+++++.+ ..|.+|++.+++...+...... .+ .++.
T Consensus 100 -----------~~~~~~~~~~~~~~~S--pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-~~-~~spG~l 164 (1045)
T 1k32_A 100 -----------GKSTGRRMFTDVAGFD--PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT-HI-LFADGRR 164 (1045)
T ss_dssp -----------EEEETTEECSEEEEEC--TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS-EE-EEETTEE
T ss_pred -----------CcccccccccccccCC--CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcc-ee-eeCCCEE
Confidence 666 899998 788866666644 4688888887765443322110 00 0000
Q ss_pred -----------------------------------cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeE
Q 010801 167 -----------------------------------LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK 211 (501)
Q Consensus 167 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 211 (501)
..+...+..+.+.++ .+++.+ ..++...+|.++... ...+
T Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~--~~dg~~~l~~~~~~g--~~~~ 239 (1045)
T 1k32_A 165 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFIT--DIDGFGQIYSTDLDG--KDLR 239 (1045)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEE--CTTSSCEEEEEETTS--CSCE
T ss_pred EEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEE--eccCceEEEEEeCCC--Ccce
Confidence 000011111111122 222222 235678888876421 1222
Q ss_pred eecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCC----CCCCCcccceEEEEEe-cCCCcEEEEE
Q 010801 212 VYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP----SNMDDLTEVITSAEFH-PIYCNLLAYS 286 (501)
Q Consensus 212 ~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~v~~v~~~-p~~~~~l~~~ 286 (501)
.+ ..|. .+...+|+|+|+.++.+.++.|++|++. ..... .+.... .....|...+.+++|+ |+| +.|+++
T Consensus 240 ~l-~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~ 314 (1045)
T 1k32_A 240 KH-TSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD-TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFV 314 (1045)
T ss_dssp EC-CCCC-SSCEEEEEESSSCEEEEETTEEEEECTT-TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEE
T ss_pred Ee-cCCC-CcceeeEcCCCCEEEEEeCCEEEEecCC-ceEee-eeccCcccccccccccccccceeeecCCCC-CEEEEE
Confidence 22 3343 4567799999999998888999999985 33332 210000 0011245578999999 999 888887
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc-ceeEEEEeeCCCEEEEEcC-CcEE-EEEeeCCCCcee
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDY-MNLK-LWDIRMDSTPVA 363 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~sp~~~~l~~~~~-~~i~-lwd~~~~~~~~~ 363 (501)
+ ++.|.+|++..+... .+.. |.. .+..++|+ ||+.|+.+++ +.+. +||+.. ++ ..
T Consensus 315 ~-~~~i~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~ 372 (1045)
T 1k32_A 315 S-RGQAFIQDVSGTYVL-----KVPE-------------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AE 372 (1045)
T ss_dssp E-TTEEEEECTTSSBEE-----ECSC-------------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EE
T ss_pred E-cCEEEEEcCCCCceE-----EccC-------------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ce
Confidence 7 889999998876432 1111 334 78999999 9999998765 6777 888863 33 33
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
.+.++...+ ..++|+|||++|++++.++.|++||+.+++ ....+..|...+..++|+| +|++
T Consensus 373 ~l~~~~~~~---------------~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~Sp--DG~~ 434 (1045)
T 1k32_A 373 KFEENLGNV---------------FAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISD--NSRF 434 (1045)
T ss_dssp ECCCCCCSE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECT--TSCE
T ss_pred EecCCccce---------------eeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECC--CCCe
Confidence 444443332 689999999999999999999999999884 3456668999999999999 7887
Q ss_pred Cccceeeeecccc----------e-eecccc-CCcccccccCCCeEEEEEccCCCEEEEeeC
Q 010801 444 SSLSNLTRGLYRQ----------A-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 444 ~~~~~l~~~~~~~----------~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 493 (501)
|++++.++ . .+|+.. ........+...+..++|+|||++|++++.
T Consensus 435 -----la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 435 -----IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp -----EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred -----EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 77776644 5 888544 234455677778899999999999998875
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=197.08 Aligned_cols=186 Identities=11% Similarity=0.051 Sum_probs=136.2
Q ss_pred CCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec---CCCcEEEEEeCCCeEEEEEccCCc
Q 010801 228 SDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 228 ~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~~~~~dg~i~~wd~~~~~ 301 (501)
++++++.++ .|+.|++|++...++.... +..|...++.++|+| ++ .+|++++.|++|++||+.+++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeee-------eccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc
Confidence 455555553 3899999998655555443 457888888899998 66 899999999999999999987
Q ss_pred ccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE------------EEc-CCcEEEEEeeCCCCceeEee--
Q 010801 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL------------SRD-YMNLKLWDIRMDSTPVATFK-- 366 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~------------~~~-~~~i~lwd~~~~~~~~~~~~-- 366 (501)
.. +.+..|. .+...+.+++|+|+|++++ +|+ |++|++||..+ ++.+..+.
T Consensus 215 ~l----~tL~g~~----------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~ 279 (356)
T 2w18_A 215 LL----KKMHIDD----------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYC 279 (356)
T ss_dssp EE----EEEECCC-------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-TEEEEEEEEC
T ss_pred EE----EEEcCCC----------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEee
Confidence 55 4454311 0124678889999999874 454 48999999986 77665542
Q ss_pred ---ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccc-eeeccCCccc
Q 010801 367 ---IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRAR 442 (501)
Q Consensus 367 ---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~ 442 (501)
+|.... .+..+ ++.++++|+.|++|+|||+.+++. ..++++|...+.. ++|+| +++
T Consensus 280 ~p~Gh~~~~---------------lsg~~--sg~~lASgS~DgTIkIWDl~tGk~-l~tL~gH~~~vvs~vafSP--DG~ 339 (356)
T 2w18_A 280 LPPGQAGRF---------------LEGDV--KDHCAAAILTSGTIAIWDLLLGQC-TALLPPVSDQHWSFVKWSG--TDS 339 (356)
T ss_dssp CCTTCCCCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCSE-EEEECCC--CCCCEEEECS--SSS
T ss_pred ccCCCccee---------------Ecccc--CCCEEEEEcCCCcEEEEECCCCcE-EEEecCCCCCeEEEEEECC--CCC
Confidence 333211 23333 488999999999999999999954 4889999887664 89999 788
Q ss_pred cCccceeeeecccce-eecc
Q 010801 443 RSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 443 ~~~~~~l~~~~~~~~-~iw~ 461 (501)
+ |++|+.|+. ++|+
T Consensus 340 ~-----LaSGS~D~TIklWd 354 (356)
T 2w18_A 340 H-----LLAGQKDGNIFVYH 354 (356)
T ss_dssp E-----EEEECTTSCEEEEE
T ss_pred E-----EEEEECCCcEEEec
Confidence 8 999999999 9995
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=229.01 Aligned_cols=330 Identities=12% Similarity=0.067 Sum_probs=210.6
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..+.+++|+|||+++++ +.||+|++||+.+++.. ..+.+|...
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------------~~~~~~~~~--------- 59 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------VLIEGKKIE--------- 59 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------------EEECTTTTT---------
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------------EEecccccc---------
Confidence 34788999999998876 68999999999988642 344555400
Q ss_pred ccceeEEEEeecCCCCEEEEeeCC---------CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d---------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
...|.+++|+ |||++|++++.+ +.+.+||+.+++...+..
T Consensus 60 ~~~v~~~~~S--pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~----------------------------- 108 (723)
T 1xfd_A 60 SLRAIRYEIS--PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP----------------------------- 108 (723)
T ss_dssp TTTCSEEEEC--TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-----------------------------
T ss_pred ccccceEEEC--CCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC-----------------------------
Confidence 0148999998 899999999764 678899988876422210
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC-
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN- 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~- 262 (501)
...|...+..++|+|||+.|+.+.++.|++||+.. +....+.......
T Consensus 109 ------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~-g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 109 ------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGV 157 (723)
T ss_dssp ------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTT
T ss_pred ------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCC-CceEEEecCCCCCc
Confidence 03455568889999999999998668999999984 4444332110000
Q ss_pred -CCCc---------ccceEEEEEecCCCcEEEEEeCCC----------------------------------eEEEEEcc
Q 010801 263 -MDDL---------TEVITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMR 298 (501)
Q Consensus 263 -~~~~---------~~~v~~v~~~p~~~~~l~~~~~dg----------------------------------~i~~wd~~ 298 (501)
+.++ ...+.+++|+||| +.|++++.|+ .|++||+.
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred eECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 0000 0133789999999 8888887543 68888887
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----C-CcEEEEEeeCCCCceeEeecc-cccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EHLR 372 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~-~~i~lwd~~~~~~~~~~~~~~-~~~~ 372 (501)
+++.. ..+..+. .+..+...+..++|+|||++|++.. + ..|++||+.+ ++....+..+ ...+
T Consensus 237 ~~~~~----~~l~~~~-------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 237 GPTHD----LEMMPPD-------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWL 304 (723)
T ss_dssp SSCCC----EECCCCC-------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCC
T ss_pred CCcee----EEeeCCc-------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEE
Confidence 76421 1111100 0112346789999999999887652 1 5799999975 6655554433 2211
Q ss_pred ccccccCCCCCcceeeEEEEcCCCcEEEE--EeCCC------eEEEEe-cCCCCc-ceEEEecccCcccc-eeeccCCcc
Q 010801 373 PKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN------LLRIFS-HGVGSA-GGITVEAGKNENRK-PILQAAPRA 441 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--~~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~v~~-~~~~~~~~~ 441 (501)
... ...++|+|||+.|+. ...++ .|++|| ..++.. ....+..+...+.. +.++| ++
T Consensus 305 ~~~-----------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp--dg 371 (723)
T 1xfd_A 305 HRQ-----------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE--KG 371 (723)
T ss_dssp CCC-----------CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET--TT
T ss_pred ecc-----------CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC--CC
Confidence 000 026899999997775 45667 567777 344420 02333333333333 57888 67
Q ss_pred ccCccceeeeeccc---ce-eecccc--C--Ccccccc---cCCCeEEEEEccCCCEEEEee
Q 010801 442 RRSSLSNLTRGLYR---QA-HENSSS--G--HHELSYN---LSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 442 ~~~~~~~l~~~~~~---~~-~iw~~~--~--~~~~~~~---~~~~i~~~~~sp~~~~la~~~ 492 (501)
+. |+..+.+ +. .+|..+ + ....+.. +...+..++|+|||++|+...
T Consensus 372 ~~-----l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 372 NK-----IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TE-----EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CE-----EEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 66 6655544 55 899443 2 1222222 466788999999999988764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=208.42 Aligned_cols=243 Identities=14% Similarity=0.109 Sum_probs=185.5
Q ss_pred CCEEEEEecC------CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 44 g~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
+..++.++.+ ++|++||+.++.. ..+.+|. ..|.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----------------------------~~l~~~~------------~~v~ 182 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----------------------------FVVHRSP------------QPLM 182 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC----------------------------EEEEEES------------SCEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC----------------------------EEEeCCC------------Ccce
Confidence 6677776654 7999999875432 5567787 8899
Q ss_pred EEEEeecCCCCEEEEeeCCC---eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~---~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
+++|+ |+|++|++++.|+ .|++||+.+++...+
T Consensus 183 ~~~~S--pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l------------------------------------------ 218 (415)
T 2hqs_A 183 SPAWS--PDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------------------------------ 218 (415)
T ss_dssp EEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCEEEE------------------------------------------
T ss_pred eeEEc--CCCCEEEEEEecCCCcEEEEEECCCCcEEEe------------------------------------------
Confidence 99998 8999999999875 999999998765432
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCC--eEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..|...+.+++|+|||+.|+ ++ .++ .|++||+.+ ++... +..|...+
T Consensus 219 --------------------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~~~~--------l~~~~~~~ 269 (415)
T 2hqs_A 219 --------------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQIRQ--------VTDGRSNN 269 (415)
T ss_dssp --------------------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCEEE--------CCCCSSCE
T ss_pred --------------------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CCEEe--------CcCCCCcc
Confidence 35567899999999999887 55 554 599999984 43332 56677889
Q ss_pred EEEEEecCCCcEEEEEeC-CC--eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 271 TSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
.+++|+|+| +.|++++. ++ .|.+||+.+++.. .+.. |...+..++|+|||++|++++
T Consensus 270 ~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 270 TEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-----RITW-------------EGSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp EEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-----ECCC-------------SSSEEEEEEECTTSSEEEEEEE
T ss_pred cceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-----EEec-------------CCCcccCeEECCCCCEEEEEEC
Confidence 999999999 88887776 45 6777788776421 1111 235688999999999998764
Q ss_pred C---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC---eEEEEecCCCCcce
Q 010801 347 Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGG 420 (501)
Q Consensus 347 ~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~ 420 (501)
+ ..|++||+.+ ++. ..+..+. .+ .+++|+|||++|++++.++ .|++||+..+ ..
T Consensus 331 ~~g~~~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~ 390 (415)
T 2hqs_A 331 NGGQQHIAKQDLAT-GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FK 390 (415)
T ss_dssp CSSCEEEEEEETTT-CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CE
T ss_pred cCCceEEEEEECCC-CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cE
Confidence 2 5899999975 444 3444443 22 6899999999999988876 7999998744 34
Q ss_pred EEEecccCcccceeeccC
Q 010801 421 ITVEAGKNENRKPILQAA 438 (501)
Q Consensus 421 ~~~~~~~~~v~~~~~~~~ 438 (501)
..+..|...+..++|+|.
T Consensus 391 ~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 391 ARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EECCCSSSEEEEEEECCC
T ss_pred EEeeCCCCCCcCCccccc
Confidence 788999999999999985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-24 Score=226.33 Aligned_cols=363 Identities=10% Similarity=0.055 Sum_probs=246.1
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...+.++.|+++ .++++++.|+.+.||.+..... ....+..|.
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--------------------------~~~~l~~~~-------- 245 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--------------------------DLRKHTSFT-------- 245 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--------------------------SCEECCCCC--------
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--------------------------cceEecCCC--------
Confidence 57889999999988 6677788889999998763211 113344443
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCC-CCCcccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHL 188 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 188 (501)
.+..++|+ |+|++|+++ .++.|.+|++....... ....... .......+...+..+.++ +++..++.+
T Consensus 246 -----~~~~~~~S--pDG~~la~~-~~~~i~~~d~~~~~l~~-l~~~~~~--~~~~~~~~~~~v~~~~~S~pdG~~la~~ 314 (1045)
T 1k32_A 246 -----DYYPRHLN--TDGRRILFS-KGGSIYIFNPDTEKIEK-IEIGDLE--SPEDRIISIPSKFAEDFSPLDGDLIAFV 314 (1045)
T ss_dssp -----SSCEEEEE--ESSSCEEEE-ETTEEEEECTTTCCEEE-CCCCCCC--BCCSEEEECGGGGEEEEEECGGGCEEEE
T ss_pred -----CcceeeEc--CCCCEEEEE-eCCEEEEecCCceEeee-eccCccc--ccccccccccccceeeecCCCCCEEEEE
Confidence 35677898 788888887 48999999995544332 1110000 000001122345556666 777766655
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCccc-ceEEEEecCCCCEEEEE-cCCeEE-EEECCCCCeeeeeeecCCCCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~-~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
. ++.+.+|+..... . ..+ ..|.. .+..++|+ +|+.|+.+ .++.+. +|++. .+.... +.+
T Consensus 315 ~---~~~i~~~~~~~~~---~-~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~~~--------l~~ 376 (1045)
T 1k32_A 315 S---RGQAFIQDVSGTY---V-LKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKAEK--------FEE 376 (1045)
T ss_dssp E---TTEEEEECTTSSB---E-EEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCEEE--------CCC
T ss_pred E---cCEEEEEcCCCCc---e-EEc-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCceE--------ecC
Confidence 5 6788889887532 1 222 46666 89999999 99999988 878888 89988 343332 336
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...+..++|+|+| +.|++++.++.|++||+.+++.. ..... |...+..++|+|||++|+++
T Consensus 377 ~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~-------------~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 377 NLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERS-------------REAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp CCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------SSSCCCCEEECTTSCEEEEE
T ss_pred CccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccC-------------CCCCccceEECCCCCeEEEE
Confidence 77889999999999 99999999999999999887543 23222 46778999999999999876
Q ss_pred cC-----------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 346 DY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~~-----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+. +.|++||+.+ ++ ...+..+.... ..++|+|||++|+.++.++...+|+..
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEecccCCcCcchh
Confidence 42 3899999975 44 55565554433 579999999999999988777777643
Q ss_pred CCC------------------------------------------cceEEEecccCcccceeeccCCccccCccceeee-
Q 010801 415 VGS------------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTR- 451 (501)
Q Consensus 415 ~~~------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~- 451 (501)
... .....+..+...+..+.+++ ++++ +++
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~--dg~~-----~~~~ 574 (1045)
T 1k32_A 502 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE--SSIL-----IYSV 574 (1045)
T ss_dssp SSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS--SEEE-----EEEC
T ss_pred ccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC--CCeE-----EEEe
Confidence 211 11223334555666777776 5654 443
Q ss_pred ----------ecccce-eec--cccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 452 ----------GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 452 ----------~~~~~~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.+.+.. .+| +....... .....+..++|||||+.|++++.+.+++|+
T Consensus 575 ~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~v~~~~~S~DG~~l~~~~~~~i~~~d 634 (1045)
T 1k32_A 575 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--EVKNNLTDLRLSADRKTVMVRKDDGKIYTF 634 (1045)
T ss_dssp CCCCSHHHHHHCCCCCEEEEEEETTTCCEE--EEEEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred cccCcccccccccCCCceEEEEECCCCcEE--EeecCcceEEECCCCCEEEEEcCCcEEEEe
Confidence 122223 555 33222211 112568899999999999999999999986
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-24 Score=217.55 Aligned_cols=280 Identities=10% Similarity=0.028 Sum_probs=189.4
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|.+++|+ |+ +.++.+ .++.|++||+.+++.....
T Consensus 82 ~~v~~~~~s--pd-~~~~~~-~~~~i~~~d~~~~~~~~l~---------------------------------------- 117 (706)
T 2z3z_A 82 FPSFRTLDA--GR-GLVVLF-TQGGLVGFDMLARKVTYLF---------------------------------------- 117 (706)
T ss_dssp CCCEEEEET--TT-TEEEEE-ETTEEEEEETTTTEEEEEE----------------------------------------
T ss_pred cCceeEEEC--CC-CeEEEE-ECCEEEEEECCCCceEEcc----------------------------------------
Confidence 458999998 67 566655 4599999999887654332
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCC----CeeeeeeecCCCCCCCccc-
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTE- 268 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~- 268 (501)
.+...+.+++|+|||+.|+++.++.|++||+... ++...+ ...+..
T Consensus 118 ----------------------~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~-------~~~~~~~ 168 (706)
T 2z3z_A 118 ----------------------DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAV-------TIDGTET 168 (706)
T ss_dssp ----------------------CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEES-------CSCCBTT
T ss_pred ----------------------CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEe-------ccCCCCC
Confidence 3345577789999999999988899999999841 333332 111112
Q ss_pred -------------ceEEEEEecCCCcEEEEEe---------------------------------CCCeEEEEEccCCcc
Q 010801 269 -------------VITSAEFHPIYCNLLAYSS---------------------------------SRGFVRLVDMRQSAL 302 (501)
Q Consensus 269 -------------~v~~v~~~p~~~~~l~~~~---------------------------------~dg~i~~wd~~~~~~ 302 (501)
.+.++.|+||| +.|++++ .+..|.+||+.+++.
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred eEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 25789999999 9898887 446799999988753
Q ss_pred cccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC-----cEEEEEeeCCCCceeEeecccccccccc
Q 010801 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
. ..... ..|...+..++|+|||++|+++. ++ .|++||+.+ ++....+.......
T Consensus 248 ~----~~~~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~---- 307 (706)
T 2z3z_A 248 V----YLQTG-----------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH---- 307 (706)
T ss_dssp E----ECCCC-----------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----
T ss_pred E----eeccC-----------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----
Confidence 2 11111 12456789999999999888753 33 899999975 53333332211110
Q ss_pred ccCCCCCcceeeEEEEcC--CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccc-eeeccCCccccCccceee-ee
Q 010801 377 DLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRSSLSNLT-RG 452 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~-~~ 452 (501)
.+..+..++|+| ||++|++++.||.++||.++........+..+...+.. ++++| +++. |+ ++
T Consensus 308 ------~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp--dg~~-----l~~~~ 374 (706)
T 2z3z_A 308 ------YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP--KGTR-----LYFES 374 (706)
T ss_dssp ------CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT--TSSE-----EEEEE
T ss_pred ------eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC--CCCE-----EEEEe
Confidence 000014689999 99999999999999999887322444667777777766 68888 5554 44 44
Q ss_pred cccc--e-eec--cccCCcccccccCCCeEEEEEccCCCEEEEeeC-----CeEEEEe
Q 010801 453 LYRQ--A-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-----NSLFFHY 500 (501)
Q Consensus 453 ~~~~--~-~iw--~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~-----~~~~i~~ 500 (501)
..++ . .+| +..........+...+..++|+|||++|+.++. ..+++|+
T Consensus 375 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp SSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred cCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 4443 2 666 332222333446678999999999999887653 2388886
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=190.26 Aligned_cols=226 Identities=12% Similarity=0.144 Sum_probs=160.0
Q ss_pred EEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCCC
Q 010801 49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128 (501)
Q Consensus 49 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~ 128 (501)
.++.|++|++||+.+++. ..+..|. ..|.+++|+ |+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~s--pdg~ 54 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNWS--PDGK 54 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEEC--TTSS
T ss_pred CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEEC--CCCC
Confidence 346789999999987753 3445566 889999998 8999
Q ss_pred EEEEeeCCCeEEEEeccc-cceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceee
Q 010801 129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (501)
Q Consensus 129 ~l~s~s~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~ 207 (501)
+|++++ ++.|++||+.+ ++.....
T Consensus 55 ~l~~~~-~~~i~~~d~~~~~~~~~~~------------------------------------------------------ 79 (297)
T 2ojh_A 55 YLLLNS-EGLLYRLSLAGDPSPEKVD------------------------------------------------------ 79 (297)
T ss_dssp EEEEEE-TTEEEEEESSSCCSCEECC------------------------------------------------------
T ss_pred EEEEEc-CCeEEEEeCCCCCCceEec------------------------------------------------------
Confidence 999886 78999999988 6644322
Q ss_pred eeeEeecCCc-ccceEEEEecCCCCEEEEE-cC--CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEE
Q 010801 208 RCQKVYPHAH-DFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (501)
Q Consensus 208 ~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 283 (501)
..+ ...+.+++|+|+++.|+++ .+ +...||.++........ +..+ ..+..++|+|++ +.|
T Consensus 80 -------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l 143 (297)
T 2ojh_A 80 -------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSF 143 (297)
T ss_dssp -------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEE
T ss_pred -------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEE
Confidence 222 4677889999999999887 33 45555554322222221 2222 248899999999 766
Q ss_pred E-EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCC
Q 010801 284 A-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDST 360 (501)
Q Consensus 284 ~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~ 360 (501)
+ +++.++.+++|++....... ..+ ..|...+..++|+|+|++|+.+. ++.+++|++...+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~---~~~-------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDIDSGVE---TRL-------------THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp EEEEEETTEEEEEEEETTTCCE---EEC-------------CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred EEEECCCCceEEEEEECCCCcc---eEc-------------ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 5 78889999999875321110 111 12356789999999999887653 58999999975466
Q ss_pred ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-----------CeEEEEecCCCCc
Q 010801 361 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLRIFSHGVGSA 418 (501)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~~ 418 (501)
.+..+..+...+ ..++|+|+|++|++++.+ +.|++||+.+++.
T Consensus 208 ~~~~~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 208 SVERITDSAYGD---------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CEEECCCCSEEE---------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CcEEEecCCccc---------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 666666555433 689999999999988775 5699999987743
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-22 Score=183.92 Aligned_cols=237 Identities=11% Similarity=0.076 Sum_probs=160.9
Q ss_pred EEEccCCCE-EEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 38 v~~s~~g~~-latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
..|.+++++ +++++.++.|.+||..+++.. ..+..+. ..+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~------------~~~ 43 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL---------------------------NQITLGY------------DFV 43 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE---------------------------EEEECCC------------CEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee---------------------------eeEEccC------------Ccc
Confidence 456666665 567778899999999877542 3333334 456
Q ss_pred eEEEEeecCCCCEEEEeeC-CCeEEEEeccccce-eeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 117 NRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.++|+ |+++++++++. ++.|.+||..+++. ....
T Consensus 44 -~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~----------------------------------------- 79 (331)
T 3u4y_A 44 -DTAIT--SDCSNVVVTSDFCQTLVQIETQLEPPKVVAI----------------------------------------- 79 (331)
T ss_dssp -EEEEC--SSSCEEEEEESTTCEEEEEECSSSSCEEEEE-----------------------------------------
T ss_pred -eEEEc--CCCCEEEEEeCCCCeEEEEECCCCceeEEec-----------------------------------------
Confidence 89997 78887777664 89999999988764 2221
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC-C--eEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..+.....+++|+|+|++++++ .+ + .|.+||+. .++....+ . .....
T Consensus 80 --------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~ 130 (331)
T 3u4y_A 80 --------------------QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTI-------P-IPYDA 130 (331)
T ss_dssp --------------------EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEE-------E-CCTTE
T ss_pred --------------------ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEE-------E-CCCCc
Confidence 2333344448999999999966 44 3 99999998 44544432 1 22345
Q ss_pred EEEEEecCCCcEEEEEeCCCe-EEEEEccCCcccccc-cceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-
Q 010801 271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D- 346 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~- 346 (501)
.+++|+|+|..++++...++. |.+|++......... ...+ ........++|+|+|++++++ .
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI--------------SGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE--------------CSSSSEEEEEECTTSSEEEEEETT
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc--------------cCCCCccceEECCCCCEEEEEeCC
Confidence 899999999335555566688 999999864321100 0111 113457899999999976654 3
Q ss_pred CCcEEEEEeeCCCCc---eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCCCC
Q 010801 347 YMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS 417 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~ 417 (501)
++.|++||+.+ ++. +..+..+... ..++|+|||++|+.++ .++.|.+||+.+++
T Consensus 197 ~~~v~v~d~~~-~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 197 GNSIGILETQN-PENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp TTEEEEEECSS-TTSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred CCeEEEEECCC-CcccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 48999999986 676 6666544332 5799999999776554 57889999998873
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-22 Score=184.87 Aligned_cols=254 Identities=9% Similarity=0.020 Sum_probs=179.6
Q ss_pred ccccceEEEEEccCCCEEEEEec-------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (501)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~-- 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---------------------------QAIHND-- 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---------------------------EEEEES--
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---------------------------EEEecC--
Confidence 34677899999999999988774 568999998877532 223222
Q ss_pred chhhccccccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..+..++|+ +++++++.+ ..++.|.+||..+++............
T Consensus 89 -----------~~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------------------- 134 (353)
T 3vgz_A 89 -----------LKPFGATIN--NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--------------------- 134 (353)
T ss_dssp -----------SCCCSEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC---------------------
T ss_pred -----------CCcceEEEC--CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc---------------------
Confidence 447788998 788865555 567999999999887655432210000
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE---cCCeEEEEECCCCCeeeeeeec
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDM 258 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~ 258 (501)
........+.+++|+|+++.++++ .++.|.+||.. ..+....
T Consensus 135 -------------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~--- 179 (353)
T 3vgz_A 135 -------------------------------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTA--- 179 (353)
T ss_dssp -------------------------------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEE---
T ss_pred -------------------------------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEE---
Confidence 000111236789999999987765 37899999998 4444443
Q ss_pred CCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC
Q 010801 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 259 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~ 338 (501)
+..+...+.+++|+|++ +.|++++.++.|.+||+.+++.. ..+.... .++...+..++|+|+
T Consensus 180 ----~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~---------~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 180 ----IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD---------DGKEHFFINISLDTA 241 (353)
T ss_dssp ----ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC---------SSSCCCEEEEEEETT
T ss_pred ----ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC---------CCCCcccceEEECCC
Confidence 23344457889999999 88999999999999999987643 2222100 112346788999999
Q ss_pred CCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCC
Q 010801 339 GQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 415 (501)
Q Consensus 339 ~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~ 415 (501)
|+++++++ + +.|.+||+.+ ++.+..+..... ..++|+|++++++.++ .++.|.+||+.+
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 99877653 3 8999999986 777777664332 3699999999665555 689999999987
Q ss_pred CC
Q 010801 416 GS 417 (501)
Q Consensus 416 ~~ 417 (501)
++
T Consensus 304 ~~ 305 (353)
T 3vgz_A 304 YK 305 (353)
T ss_dssp TE
T ss_pred Ce
Confidence 73
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-22 Score=196.48 Aligned_cols=293 Identities=12% Similarity=0.100 Sum_probs=204.5
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEe--cCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.+.+++|+|||++|++++.|++|++||+ .+++ ....+..+
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---------------------------~~~~i~~g----------- 221 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---------------------------KVAEIKIG----------- 221 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---------------------------EEEEEECC-----------
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc---------------------------EEEEEecC-----------
Confidence 3889999999999999999999999999 5443 23444432
Q ss_pred cccceeEEEEeecC----CCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 112 ~~~~V~~v~~~~~~----~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..+..++|+ | +|+++++++ .+++|.+||..++++..........
T Consensus 222 --~~p~~va~s--p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~--------------------------- 270 (543)
T 1nir_A 222 --IEARSVESS--KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT--------------------------- 270 (543)
T ss_dssp --SEEEEEEEC--CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC---------------------------
T ss_pred --CCcceEEeC--CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc---------------------------
Confidence 557899997 7 899999987 5899999999988766554211000
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCc-ccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.. .. .-| ...+.++.++|++..+++ . .++.|.+||+...+. +.... +
T Consensus 271 --------------~~-------~~---~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~~~~-----i 320 (543)
T 1nir_A 271 --------------VD-------TQ---TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LTVTS-----I 320 (543)
T ss_dssp --------------SS-------SC---CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CEEEE-----E
T ss_pred --------------cC-------cc---ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ceeEE-----e
Confidence 00 00 012 337889999998777655 4 899999999984332 22111 1
Q ss_pred CCcccceEEEEEecCCCcEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQH 341 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~ 341 (501)
.+...+.++.|+|+| ++|+++ ..+++|.+||+.++++. ..+.. .. ..|.+....+ ++|+ +.+
T Consensus 321 -~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~-g~--------~ph~g~g~~~-~~p~~g~~ 384 (543)
T 1nir_A 321 -GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDV-GK--------TPHPGRGANF-VHPKYGPV 384 (543)
T ss_dssp -ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEEC-SS--------SBCCTTCEEE-EETTTEEE
T ss_pred -ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----Eeecc-CC--------CCCCCCCccc-CCCCCccE
Confidence 234567889999999 766554 56899999999998654 33332 00 0133323333 5777 666
Q ss_pred EEEEc--CCcEEEEEeeCC------CCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-------CCC
Q 010801 342 LLSRD--YMNLKLWDIRMD------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSN 406 (501)
Q Consensus 342 l~~~~--~~~i~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg 406 (501)
++++. +++|.+||+.+. .+.++++.++.... ..++++|++++|++++ .++
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~---------------~~v~~~pdg~~l~v~~~~~~~~~~~~ 449 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSHLYVDTTFNPDARISQ 449 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc---------------eEEEcCCCCCcEEEecCCCCCcccCc
Confidence 67764 599999999752 57788888876543 5799999999999987 277
Q ss_pred eEEEEecCCCCcceEEE--------ecccCcccceeeccCCccccCccceeeee-----cccce-eecccc
Q 010801 407 LLRIFSHGVGSAGGITV--------EAGKNENRKPILQAAPRARRSSLSNLTRG-----LYRQA-HENSSS 463 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-~iw~~~ 463 (501)
+|.|||+.+++.....+ ..+...+..+.|++ +|+. +..+ +.++. .+|+..
T Consensus 450 ~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~g~~-----~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 450 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK--RGDE-----VWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp CEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS--SSSE-----EEEEEECCTTSCCEEEEEETT
T ss_pred eEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC--CCCE-----EEEEeecCCCCCCeEEEEECC
Confidence 99999999987654554 35577888999998 5555 3332 23566 888444
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=203.55 Aligned_cols=305 Identities=10% Similarity=0.018 Sum_probs=197.0
Q ss_pred cceeEEEEeecCCCCEEEEeeC-CC-----eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 114 EKINRVRWCAAPNGSMFILSTN-DK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~-d~-----~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|..++|+ |||++|++++. |+ .|++||+.+++........... ++...+
T Consensus 37 ~~~~~~~~S--pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~--------------------~~~~~~-- 92 (741)
T 2ecf_A 37 PTLMKPKVA--PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL--------------------PGTETL-- 92 (741)
T ss_dssp CCCEEEEEC--TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------
T ss_pred CCCCCceEe--cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc--------------------cccccc--
Confidence 569999998 89999999997 88 9999999998766554221000 000000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCC--eeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD--QCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~ 265 (501)
..+... .+.... ......+.+++|+|||+.|+++.++.|++||+..+. .... +..
T Consensus 93 ------------~~~~~~-~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~--------l~~ 149 (741)
T 2ecf_A 93 ------------SDEEKA-RRERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ--------LTH 149 (741)
T ss_dssp -----------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB--------CCC
T ss_pred ------------cchhhh-hhhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE--------ccc
Confidence 000000 000000 011134788999999999999855999999998441 3322 556
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec--------ccceeEEEEee
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI--------IASISDIKFAN 337 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--------~~~i~~~~~sp 337 (501)
+...+..++|+|+| +.|++++ ++.|++||+.+++.. ++...+. .....++ ...+..++|+|
T Consensus 150 ~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~----~~~~~~~-----~~~~~g~~~~v~~~~~~~~~~~~~Sp 218 (741)
T 2ecf_A 150 GEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQM----QLTADGS-----TTIGNGIAEFVADEEMDRHTGYWWAP 218 (741)
T ss_dssp SSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEE----ECCCCCC-----SSEEESCCCHHHHHHSCCCCSEEECT
T ss_pred CCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEE----EeccCCc-----cceeccccceeeeeccccccceEECC
Confidence 77889999999999 9888887 569999999887532 1111100 0000010 11257899999
Q ss_pred CCCEEEEEc-CC---------------------------------cEEEEEeeCCCCceeEee--ccccccccccccCCC
Q 010801 338 DGQHLLSRD-YM---------------------------------NLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNN 381 (501)
Q Consensus 338 ~~~~l~~~~-~~---------------------------------~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 381 (501)
||++|++++ ++ .|++||+.+.++...... .+...
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~---------- 288 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY---------- 288 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE----------
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE----------
Confidence 999998764 33 778888763033322221 12222
Q ss_pred CCcceeeEEEEcCCCcEEEEEeC-----CCeEEEEecCCCCcceEEEecccC----cccceeeccCCccccCccceeeee
Q 010801 382 DSIFDKFECSVSGDGLHFATGSY-----SNLLRIFSHGVGSAGGITVEAGKN----ENRKPILQAAPRARRSSLSNLTRG 452 (501)
Q Consensus 382 ~~~~~~~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~l~~~ 452 (501)
+..++| |||++|+.++. +..|++||+.+++.. ..+..+.. .+..++|+| ++++ ++++
T Consensus 289 -----~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~ 354 (741)
T 2ecf_A 289 -----LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLD--DGSI-----LWSS 354 (741)
T ss_dssp -----EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECT--TSCE-----EEEE
T ss_pred -----EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECC--CCeE-----EEEe
Confidence 268999 99999987654 578999999988543 44444443 456889988 6667 8888
Q ss_pred cccce-eeccc--cCCcccccccCCCeEEE-EEccCCCEEEEee-CC---eEEEEe
Q 010801 453 LYRQA-HENSS--SGHHELSYNLSSKLLHL-AWHPTTNLIACAN-GN---SLFFHY 500 (501)
Q Consensus 453 ~~~~~-~iw~~--~~~~~~~~~~~~~i~~~-~~sp~~~~la~~~-~~---~~~i~~ 500 (501)
+.++. .+|.. ......+..+...|..+ +|+|+++.|++.+ .+ .+.||.
T Consensus 355 ~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 355 ERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred cCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 88887 88832 22245556677788887 5999999876544 44 566774
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-21 Score=177.24 Aligned_cols=279 Identities=14% Similarity=0.113 Sum_probs=177.9
Q ss_pred cccccceEEEEEccCCCEEEEEecC-CcEEEEEec--CCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
+.|...+.+++|+|+|++|++++.+ +.|.+|++. +++. +....+..+
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~~----- 83 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------------TFAAESALP----- 83 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------------EEEEEEECS-----
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------------eeccccccC-----
Confidence 4577889999999999999988876 999999997 4421 122333322
Q ss_pred hccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..+..++|+ |+++++++++ .++.|.+||+.++....
T Consensus 84 --------~~~~~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~--------------------------------- 120 (343)
T 1ri6_A 84 --------GSLTHISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVG--------------------------------- 120 (343)
T ss_dssp --------SCCSEEEEC--TTSSEEEEEETTTTEEEEEEEETTEEEE---------------------------------
T ss_pred --------CCCcEEEEc--CCCCEEEEEecCCCeEEEEECCCCcccc---------------------------------
Confidence 457899997 7888887776 48899999995332111
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeee--ecCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKP 260 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~--~~~~ 260 (501)
....+ .....+.+++|+|+++.++++ .++.|.+||+...+...... ..
T Consensus 121 ------------------------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 172 (343)
T 1ri6_A 121 ------------------------VVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV-- 172 (343)
T ss_dssp ------------------------EEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE--
T ss_pred ------------------------ccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc--
Confidence 11111 122357889999999977765 79999999998534332211 00
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEE-eCCCeEEEEEccC--CcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
.......+..++|+|++ ++++++ ..++.|.+||+.. ++.. ....... .+.. ......+..++|+|
T Consensus 173 --~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~---~~~~----~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 173 --TTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDM---MPEN----FSDTRWAADIHITP 240 (343)
T ss_dssp --ECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEEC---SCTT----CCSCCCEEEEEECT
T ss_pred --ccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccc---cCcc----ccccCCccceEECC
Confidence 11123467899999999 765544 4789999999964 3211 0011111 0000 00123567899999
Q ss_pred CCCEEEEE-c-CCcEEEEEeeCCC---CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEE
Q 010801 338 DGQHLLSR-D-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIF 411 (501)
Q Consensus 338 ~~~~l~~~-~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iw 411 (501)
+|++|+++ . ++.|++||+.... +.+..+..+... ..++|+|+|++|++++ .++.|.+|
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeEEEE
Confidence 99988754 3 5999999997312 233334333321 5899999999888887 58999999
Q ss_pred ecC--CCCcc-eEEEecccCcccceeecc
Q 010801 412 SHG--VGSAG-GITVEAGKNENRKPILQA 437 (501)
Q Consensus 412 d~~--~~~~~-~~~~~~~~~~v~~~~~~~ 437 (501)
+++ ++... ...+... .....+++.+
T Consensus 305 ~~d~~~g~~~~~~~~~~g-~~p~~i~~~~ 332 (343)
T 1ri6_A 305 EIVGEQGLLHEKGRYAVG-QGPMWVVVNA 332 (343)
T ss_dssp EEETTTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred EEcCCCceeeEccccccC-CCCeeEEEEc
Confidence 654 44221 2233332 3344555655
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-21 Score=179.23 Aligned_cols=276 Identities=11% Similarity=0.100 Sum_probs=170.7
Q ss_pred cceeEEEEeecCCCCEEEEeeCC-CeEEEEecc--ccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d-~~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+.+++|+ |++++|++++.+ +.|++|++. +++.....
T Consensus 38 ~~~~~~~~s--pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~------------------------------------- 78 (343)
T 1ri6_A 38 GQVQPMVVS--PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA------------------------------------- 78 (343)
T ss_dssp SCCCCEEEC--TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-------------------------------------
T ss_pred CCCceEEEC--CCCCEEEEeecCCCeEEEEEecCCCCceeecc-------------------------------------
Confidence 678999997 889988888876 999999997 44432211
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.+ ..+. .+..++|+|+++.++++ .++.|.+||+. .+....... .+. ...
T Consensus 79 ---------------------~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~----~~~-~~~ 129 (343)
T 1ri6_A 79 ---------------------ES-ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVD----VVE-GLD 129 (343)
T ss_dssp ---------------------EE-ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEE----EEC-CCT
T ss_pred ---------------------cc-ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCccccccc----ccc-CCC
Confidence 11 1222 67889999999987665 58999999995 222211110 022 223
Q ss_pred ceEEEEEecCCCcEEEEEe-CCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 269 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.+.+++|+|++ +.+++++ .++.|.+||+.+ ++........... .....+..++|+|+++++++++
T Consensus 130 ~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 130 GCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------VEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp TBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------STTCCEEEEEECTTSSEEEEEE
T ss_pred CceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeeccccccc------------CCCCCcceEEECCCCCEEEEEe
Confidence 57889999999 7777776 899999999987 4322100001111 0124678899999999776543
Q ss_pred --CCcEEEEEeeCC-CCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE-EEeCCCeEEEEecCC--CC-
Q 010801 347 --YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV--GS- 417 (501)
Q Consensus 347 --~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~iwd~~~--~~- 417 (501)
++.|++|++... ++. ...+....... .....+..++|+|+|++|+ ++..++.|++|++.. +.
T Consensus 197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 197 ELNSSVDVWELKDPHGNIECVQTLDMMPENF---------SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TTTTEEEEEESSCTTSCCEEEEEEECSCTTC---------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCCEEEEEEecCCCCcEEEEeeccccCccc---------cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 499999999531 222 22222111000 0000125799999998877 455799999999983 32
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeec-ccce-eeccccCC---cc--cccccCCCeEEEEEccCCCE
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-YRQA-HENSSSGH---HE--LSYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~iw~~~~~---~~--~~~~~~~~i~~~~~sp~~~~ 487 (501)
.....+..+.. +..++++| ++++ |+.++ .++. .+|..+.. .. ..........+++|.|+.+.
T Consensus 268 ~~~~~~~~~~~-~~~~~~s~--dg~~-----l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 268 SKEGFQPTETQ-PRGFNVDH--SGKY-----LIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEEEECSSS-CCCEEECT--TSSE-----EEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred EEeeeecCCCc-cceEEECC--CCCE-----EEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence 22334444444 88899998 6665 55555 5677 99944311 11 11122244567888877654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=205.14 Aligned_cols=318 Identities=11% Similarity=0.049 Sum_probs=199.5
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 37 ~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
.++|+|||++++++ .|++|++||+.+++.. ..+.+|... ...|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------------~~~~~~~~~---------~~~~ 62 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------------TILSNRTMK---------SVNA 62 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------------EEECHHHHH---------TTTC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------------EEEcccccc---------ccce
Confidence 78999999766655 6999999999987542 333334300 0148
Q ss_pred eEEEEeecCCCCEEEEeeC---------CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 117 NRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s~---------d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
.+++|+ |||++|++++. ++.|++||+.+++.....
T Consensus 63 ~~~~~S--pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~---------------------------------- 106 (719)
T 1z68_A 63 SNYGLS--PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN---------------------------------- 106 (719)
T ss_dssp SEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS----------------------------------
T ss_pred eeEEEC--CCCCeEEEEecCceeEEeecceEEEEEECCCCccccce----------------------------------
Confidence 899998 89999999876 789999999887642100
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.....+..++|+|||+.|+.+.++.|++|++.+ +....+. ..++.
T Consensus 107 ----------------------------~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~-g~~~~l~------~~~~~ 151 (719)
T 1z68_A 107 ----------------------------ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPG-DPPFQIT------FNGRE 151 (719)
T ss_dssp ----------------------------CCCSSBCCEEECSSTTCEEEEETTEEEEESSTT-SCCEECC------CCCBT
T ss_pred ----------------------------ecCcccccceECCCCCEEEEEECCeEEEEeCCC-CCcEEEe------cCCCc
Confidence 001346779999999999998788999999984 3333321 12222
Q ss_pred cc-----------------eEEEEEecCCCcEEEEEeCCC----------------------------------eEEEEE
Q 010801 268 EV-----------------ITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVD 296 (501)
Q Consensus 268 ~~-----------------v~~v~~~p~~~~~l~~~~~dg----------------------------------~i~~wd 296 (501)
.. ..+++|+||| +.|++++.|. .|++||
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 21 2489999999 9999887652 788888
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-----CcEEEEE----eeCCCCceeEe--
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF-- 365 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-----~~i~lwd----~~~~~~~~~~~-- 365 (501)
+.+++... .... .....+.+|...+..++|+||++++++..+ ..|.+|| +.+ ++....+
T Consensus 231 ~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~ 300 (719)
T 1z68_A 231 TTYPAYVG----PQEV-----PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEH 300 (719)
T ss_dssp SSCHHHHC----CEEC-----CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEE
T ss_pred CCCCCccc----eeEc-----cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEec
Confidence 88764310 0000 000012345678999999999887776432 3488888 654 4443333
Q ss_pred --eccccccccccccCCCCCcceeeEEEEcCCCcEEEE--EeCCC--eEEEEecCCCCcceEEEecccCcccceeeccCC
Q 010801 366 --KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 439 (501)
Q Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 439 (501)
.++...+.. .. ...+.|+|||+.|+. ...+| .|.+|++.+++ ...+..+...+..+.+. .
T Consensus 301 ~~~~~~~~~~~--------~~--~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d- 366 (719)
T 1z68_A 301 IEESRTGWAGG--------FF--VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-T- 366 (719)
T ss_dssp EEECSSSCSSS--------SS--CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-C-
T ss_pred ccccCCceEcc--------cc--CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-e-
Confidence 234433210 00 016899999996554 44555 56777776654 35555555556666666 2
Q ss_pred ccccCccceeeeecc----cce-eecccc---CC--ccccc----ccCCCeEEEEEccCCCEEEEee
Q 010801 440 RARRSSLSNLTRGLY----RQA-HENSSS---GH--HELSY----NLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 440 ~~~~~~~~~l~~~~~----~~~-~iw~~~---~~--~~~~~----~~~~~i~~~~~sp~~~~la~~~ 492 (501)
.+.+ ++++.. ++. .+|... +. ...+. ++...+..++|+|++++|+..+
T Consensus 367 ~~~i-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 367 QDSL-----FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp SSEE-----EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred CCEE-----EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 3333 334433 355 888432 11 11111 2456778899999999888543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=177.52 Aligned_cols=267 Identities=11% Similarity=0.123 Sum_probs=170.2
Q ss_pred cccccceEEEEEccCCCEEEEEec---CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..+...+..++|+|||+ |++++. ++.|.+|++.+++. +.+..+..+.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~---- 85 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG---- 85 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES----
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC----
Confidence 34567788999999999 555554 68999999976632 2334444455
Q ss_pred hccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEecc-ccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..+..++|+ |++++|++++ .++.|.+|++. ++............
T Consensus 86 --------~~p~~~a~s--pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------------------------ 131 (347)
T 3hfq_A 86 --------TPPAYVAVD--EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG------------------------ 131 (347)
T ss_dssp --------CCCSEEEEE--TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC------------------------
T ss_pred --------CCCEEEEEC--CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC------------------------
Confidence 678899998 8999888887 78999999995 33322211100000
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
..+. ...+...+.+++|+|+|+++++. .++.|.+|++...+.........
T Consensus 132 -----------------------~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~--- 182 (347)
T 3hfq_A 132 -----------------------HGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT--- 182 (347)
T ss_dssp -----------------------CCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE---
T ss_pred -----------------------CCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE---
Confidence 0000 01234568899999999966666 78999999998433322211000
Q ss_pred CCCcccceEEEEEecCCCcEEEE-EeCCCeEEEEEccC--CcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
. .....+..++|+|+| +++++ ...++.|.+|++.. ++.. ....+.. .+.. +. ....+..++|+|||
T Consensus 183 ~-~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~---~~~~---~~-~~~~~~~i~~spdG 251 (347)
T 3hfq_A 183 M-EAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKT---IPAD---YT-AHNGAAAIRLSHDG 251 (347)
T ss_dssp C-CTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEES---SCTT---CC-SCCEEEEEEECTTS
T ss_pred c-CCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--Eeeeeee---cCCC---CC-CCCcceeEEECCCC
Confidence 1 122356789999999 75554 56689999999875 3221 0111111 0000 00 01358889999999
Q ss_pred CEEEEE-c-CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecC
Q 010801 340 QHLLSR-D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 414 (501)
Q Consensus 340 ~~l~~~-~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 414 (501)
++|+++ . ++.|.+|++...+ +.+..+..+.... ..++|+|||++|++++. ++.|.+|+++
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 988544 3 5999999997322 2333444332222 58999999998888776 4899999554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-21 Score=197.86 Aligned_cols=280 Identities=8% Similarity=0.051 Sum_probs=187.4
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..|.+++|||| ++++.+ .++.|++||+.+++. ..+..+.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~----------------------------~~l~~~~----------- 120 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV----------------------------TYLFDTN----------- 120 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence 56999999999 666665 469999999987643 2344455
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccc-----cceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+.+++|+ |+|++|+++ .|+.|++|++.+ ++............
T Consensus 121 -~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~--------------------------- 169 (706)
T 2z3z_A 121 -EETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL--------------------------- 169 (706)
T ss_dssp -TCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE---------------------------
T ss_pred -ccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe---------------------------
Confidence 668899998 899999985 689999999988 66544321110000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-----------------------------
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----------------------------- 237 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----------------------------- 237 (501)
.+-. . .+ ..+...+.+++|+|||+.|+++ .
T Consensus 170 ----------~~g~-------~--~~-~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 170 ----------VYGQ-------A--VH-QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp ----------EESS-------C--CG-GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred ----------Eccc-------c--hh-hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 0000 0 00 2333456789999999999886 2
Q ss_pred ----CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC-----eEEEEEccCCcccccccc
Q 010801 238 ----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSAR 308 (501)
Q Consensus 238 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~ 308 (501)
+..|++||+. .+....+. ....|...+.+++|+|+| +.|++++.++ .|.+||+.+++... .
T Consensus 230 ~~~~~~~l~~~d~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~ 299 (706)
T 2z3z_A 230 TPSHHVTVGIYHLA-TGKTVYLQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVR---T 299 (706)
T ss_dssp SCCCEEEEEEEETT-TTEEEECC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEE---E
T ss_pred CCCCeeEEEEEECC-CCceEeec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceee---E
Confidence 2579999998 44433321 123566789999999999 8888887775 89999998873221 1
Q ss_pred eeecccccCCCcceeeecccceeEEEEee--CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcc
Q 010801 309 ILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (501)
....... .....+..++|+| ||+++++++ ++.++||+++..++.+..+..+...+
T Consensus 300 ~~~~~~~---------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v------------- 357 (706)
T 2z3z_A 300 LFVETDK---------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV------------- 357 (706)
T ss_dssp EEEEECS---------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE-------------
T ss_pred EEEccCC---------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE-------------
Confidence 2211000 0011346789999 999988875 48899998874466666776554432
Q ss_pred eeeE-EEEcCCCcEEEEEeC-CC----eEEEEecCCCCcceEEEecccCcccceeeccCCcccc
Q 010801 386 DKFE-CSVSGDGLHFATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 386 ~~~~-~~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 443 (501)
.. ++|+|+++.|+.++. ++ .|+.||+.++. ...+. +...+..++++| +++.
T Consensus 358 --~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~sp--dg~~ 414 (706)
T 2z3z_A 358 --TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSP--DGSA 414 (706)
T ss_dssp --EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECT--TSSE
T ss_pred --EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECC--CCCE
Confidence 34 799999988765554 44 67777777653 23333 566788899998 6665
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=176.87 Aligned_cols=235 Identities=12% Similarity=0.120 Sum_probs=165.2
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecC-CcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
...|...|.+++|+|+|++||+++ ++.|++||+.+ ++.. ....+|.
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~---------------------------~~~~~~~----- 83 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE---------------------------KVDTGFA----- 83 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE---------------------------ECCCTTC-----
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce---------------------------Eeccccc-----
Confidence 456889999999999999999986 78999999987 6531 2333442
Q ss_pred ccccccccceeEEEEeecCCCCEEEEee--CCCeEEEEec--cccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s--~d~~i~lw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
...|.+++|+ |++++|++++ .++..+||.+ .++....+
T Consensus 84 ------~~~~~~~~~s--pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------ 125 (297)
T 2ojh_A 84 ------TICNNDHGIS--PDGALYAISDKVEFGKSAIYLLPSTGGTPRLM------------------------------ 125 (297)
T ss_dssp ------CCBCSCCEEC--TTSSEEEEEECTTTSSCEEEEEETTCCCCEEC------------------------------
T ss_pred ------cccccceEEC--CCCCEEEEEEeCCCCcceEEEEECCCCceEEe------------------------------
Confidence 1668999998 8999999998 4455666654 33331111
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
.. ...+..++|+|+++.|+ ++ .++.+++|+++........
T Consensus 126 --------------------------------~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~----- 167 (297)
T 2ojh_A 126 --------------------------------TK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR----- 167 (297)
T ss_dssp --------------------------------CS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE-----
T ss_pred --------------------------------ec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE-----
Confidence 12 22478899999999887 56 8999999986533322222
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
+..+...+.+++|+|++ +.|++++ .++.+++|++...... ...+. .|...+..++|+|+|
T Consensus 168 --~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~-------------~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 168 --LTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSS---VERIT-------------DSAYGDWFPHPSPSG 228 (297)
T ss_dssp --CCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC---EEECC-------------CCSEEEEEEEECTTS
T ss_pred --cccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCC---cEEEe-------------cCCcccCCeEECCCC
Confidence 45677789999999999 7776655 5899999988632111 02222 234578899999999
Q ss_pred CEEEEEc-C-----------CcEEEEEeeCCCCce--eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 340 QHLLSRD-Y-----------MNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 340 ~~l~~~~-~-----------~~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
++|++++ + +.|++||+.. ++.. ..+.+|...+ ..++|+|++++|++++.+
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEEC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEec
Confidence 9988763 2 4599999975 5443 3333555443 579999999999888765
Q ss_pred C
Q 010801 406 N 406 (501)
Q Consensus 406 g 406 (501)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-20 Score=173.42 Aligned_cols=253 Identities=10% Similarity=0.093 Sum_probs=168.1
Q ss_pred ccceEEEEEccCCCEEEEEec-CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
...+ +++|+|+|++|++++. ++.|.+||..+++. ....+..+.
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------------------~~~~~~~~~--------- 83 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------------------------KVVAIQEGQ--------- 83 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------EEEEEEECS---------
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------eEEecccCC---------
Confidence 4456 9999999997777665 88999999987753 123444454
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCC-C--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTND-K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d-~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
....+++|+ |++++++++..+ + .|.+||+.+++.....
T Consensus 84 ---~~~~~~~~s--~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~---------------------------------- 124 (331)
T 3u4y_A 84 ---SSMADVDIT--PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI---------------------------------- 124 (331)
T ss_dssp ---SCCCCEEEC--TTSSEEEECCCSSSSCEEEEEETTTTEEEEEE----------------------------------
T ss_pred ---CCccceEEC--CCCCEEEEecCCCCcccEEEEECCCCCeEEEE----------------------------------
Confidence 445559997 899998855554 3 8999999887754432
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCe-EEEEECCCCCeeeeeeecCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR-INLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~-i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.......+++|+|+|+++++ + .++. |.+|++...+...... . ...
T Consensus 125 ----------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~ 172 (331)
T 3u4y_A 125 ----------------------------PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFI 172 (331)
T ss_dssp ----------------------------ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEE
T ss_pred ----------------------------ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---ccc
Confidence 12234578999999986655 4 6677 9999998544332210 0 011
Q ss_pred CcccceEEEEEecCCCcEE-EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.....+..++|+|+| +++ +++..++.|.+||+.+++... ....+.. ...+..++|+|||++|+
T Consensus 173 ~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 173 SGGTRPFNITFTPDG-NFAFVANLIGNSIGILETQNPENIT-LLNAVGT--------------NNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp CSSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC--------------SSCCCCEEECTTSSEEE
T ss_pred cCCCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCcccc-eeeeccC--------------CCCCceEEECCCCCEEE
Confidence 233457899999999 755 555568999999998876410 0122222 25678899999999877
Q ss_pred EEc--CCcEEEEEeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCCC
Q 010801 344 SRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 416 (501)
Q Consensus 344 ~~~--~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~ 416 (501)
++. ++.|.+||+.+ ++. +..+...-... .........++|+|||++|++++ .++.|.+||+...
T Consensus 237 v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECSSEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEEcCCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 653 38899999975 554 33332220000 00111114589999999886555 4679999999864
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=200.34 Aligned_cols=289 Identities=11% Similarity=0.063 Sum_probs=186.2
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..+.+++|+ |+|+++++ +.||+|++||+.+++.....
T Consensus 17 ~~~~~~~~s--pdg~~~~~-~~dg~i~~~d~~~g~~~~~~---------------------------------------- 53 (723)
T 1xfd_A 17 IHDPEAKWI--SDTEFIYR-EQKGTVRLWNVETNTSTVLI---------------------------------------- 53 (723)
T ss_dssp CCCCCCCBS--SSSCBCCC-CSSSCEEEBCGGGCCCEEEE----------------------------------------
T ss_pred ccccccEEc--CCCcEEEE-eCCCCEEEEECCCCcEEEEe----------------------------------------
Confidence 447788998 78887665 78999999999988755433
Q ss_pred cceEEEeccCceeeeeeEeecCCccc---ceEEEEecCCCCEEEEE-cC---------CeEEEEECCCCCeeeeeeecCC
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
..|.. .|.+++|+|||++|+++ .+ +.+++||+.++ +...+
T Consensus 54 ---------------------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l----- 106 (723)
T 1xfd_A 54 ---------------------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQSL----- 106 (723)
T ss_dssp ---------------------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-CCEEC-----
T ss_pred ---------------------ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC-ceEec-----
Confidence 23332 48899999999999987 53 78899999844 33221
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc---------cee
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA---------SIS 331 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~ 331 (501)
.....|...+..++|+|+| +.|++++. +.|++||+.+++.. ++...+.. ...+.++.. .+.
T Consensus 107 ~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~----~~~~~~~~----~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAI----RVVSTGKE----GVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCE----EEECCCBT----TTEEEEECCHHHHHTTSSSSE
T ss_pred cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceE----EEecCCCC----CceECcccceeEEEEeccCcc
Confidence 1234455568899999999 88988876 79999999887543 22221000 000111211 347
Q ss_pred EEEEeeCCCEEEEEc-C-C---------------------------------cEEEEEeeCCCCceeEeecccccccccc
Q 010801 332 DIKFANDGQHLLSRD-Y-M---------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~-~-~---------------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
+++|+|||++|++++ + + .|++||+.+ ++....+..+.....
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~--- 252 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRM--- 252 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGG---
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCC---
Confidence 899999999998764 2 1 678888764 444444443311000
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeC----CCeEEEEecCCCCcceEEEe-cccCccc----ceeeccCCccccCccc
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGSAGGITVE-AGKNENR----KPILQAAPRARRSSLS 447 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~-~~~~~v~----~~~~~~~~~~~~~~~~ 447 (501)
....+..++|+|||++|++.+. +..|++||+.+++.. ..+. .+...+. .++|+| +|+.
T Consensus 253 ------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~sp--dg~~---- 319 (723)
T 1xfd_A 253 ------REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHEDESEAWLHRQNEEPVFSK--DGRK---- 319 (723)
T ss_dssp ------SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEEEECSSCCCCCCCCCEECT--TSCS----
T ss_pred ------ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce-EEEEeccCCEEeccCCCceEcC--CCCe----
Confidence 0011268999999999877653 357999999988544 3333 3444443 788888 6765
Q ss_pred eeee--ecccc----e-eec--c--ccCC---cccccccCCCeEE-EEEccCCCEEEEee-C---CeEEEEe
Q 010801 448 NLTR--GLYRQ----A-HEN--S--SSGH---HELSYNLSSKLLH-LAWHPTTNLIACAN-G---NSLFFHY 500 (501)
Q Consensus 448 ~l~~--~~~~~----~-~iw--~--~~~~---~~~~~~~~~~i~~-~~~sp~~~~la~~~-~---~~~~i~~ 500 (501)
|+. +..++ . .+| + .++. ...+......+.. ++|+|||+.|+..+ + ..+.+|.
T Consensus 320 -l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 320 -FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp -EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred -EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 554 44555 3 555 4 2223 3334434445555 69999999998665 3 3466764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=187.43 Aligned_cols=257 Identities=8% Similarity=-0.020 Sum_probs=182.5
Q ss_pred cceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
.+|++++|+ |||++|++++. ||+++||++.+++...+.
T Consensus 22 ~~~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~~lt--------------------------------------- 60 (582)
T 3o4h_A 22 VEKYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETVKLN--------------------------------------- 60 (582)
T ss_dssp SCEEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------------
T ss_pred cchheeecC--CCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------------
Confidence 669999998 79999999886 999999998666543321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c---CCeEEEEECCC--CCeeeeeeecCCCCCCCc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~ 266 (501)
..+...+..++|+|| ++++++ . +....+|.++. .+.... +...
T Consensus 61 ----------------------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~--------l~~~ 109 (582)
T 3o4h_A 61 ----------------------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR--------LEAV 109 (582)
T ss_dssp ----------------------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE--------CTTS
T ss_pred ----------------------cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc--------ccCC
Confidence 233357889999999 677766 4 45566665543 232222 1111
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~- 345 (501)
..+...+|+|++...+++.+.++.+.+||+.+++.. ++... .. .+++|+|||++|+++
T Consensus 110 -~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~--------------~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 110 -KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARL--------------PG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp -CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEE--------------SS--CEEEEEEETTEEEEEE
T ss_pred -CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecC--------------CC--ceEEECCCCCEEEEEE
Confidence 123456888887444444455555669999887542 22222 12 889999999999965
Q ss_pred cC----CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC--eEEEEecCCCCcc
Q 010801 346 DY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAG 419 (501)
Q Consensus 346 ~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~ 419 (501)
.+ ..|++||+.+ ++. ..+..+...+ ..++|||||++|+++..++ .|++||+++++..
T Consensus 169 ~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSS-GGL-RVFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEETTEEEEEEEETTT-CCC-EEECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred EcCCCCeEEEEEcCCC-CCc-eEeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 33 6799999874 443 4566665543 6899999999999888888 8999999987544
Q ss_pred eEEEecccCccccee--------eccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCEEEE
Q 010801 420 GITVEAGKNENRKPI--------LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIAC 490 (501)
Q Consensus 420 ~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~ 490 (501)
.+..|...+..++ ++| +|++ +++++.++. .+|.. +.... .....|.+++|+ +++++++
T Consensus 232 --~~~~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~~~~g~~~l~~~-g~~~~--~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 232 --DLELPSKDFSSYRPTAITWLGYLP--DGRL-----AVVARREGRSAVFID-GERVE--APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp --ECCCSCSHHHHHCCSEEEEEEECT--TSCE-----EEEEEETTEEEEEET-TEEEC--CCSSEEEEEEEE-TTEEEEE
T ss_pred --EccCCCcChhhhhhccccceeEcC--CCcE-----EEEEEcCCcEEEEEE-CCeec--cCCCceEEEEec-CCEEEEE
Confidence 7778888888888 998 6677 888999999 99976 22221 344678899999 9999887
Q ss_pred eeC
Q 010801 491 ANG 493 (501)
Q Consensus 491 ~~~ 493 (501)
++.
T Consensus 299 ~s~ 301 (582)
T 3o4h_A 299 HTS 301 (582)
T ss_dssp EEE
T ss_pred EcC
Confidence 764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-21 Score=191.43 Aligned_cols=271 Identities=13% Similarity=0.067 Sum_probs=179.2
Q ss_pred ccceEEEEEccCCCEEEEEec-CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+|++++|+|||++||+++. ||+++||++.+++. ..+..|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~--------- 63 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREP--------- 63 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSC---------
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeeccc---------
Confidence 567999999999999999886 99999999876643 2333333
Q ss_pred ccccceeEEEEeecCCCCEEEEeeC---CCeEEEEeccc---cceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD---QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~---d~~i~lw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
...+..++|+ || +.+++++. +...++|.+.. +......
T Consensus 64 --~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~------------------------------- 107 (582)
T 3o4h_A 64 --INSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLE------------------------------- 107 (582)
T ss_dssp --CSEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECT-------------------------------
T ss_pred --ccccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCcccccc-------------------------------
Confidence 0468999998 66 66666654 45566665543 1111100
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE--EEEEcCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
..+ .+...+|+|+|+. ++++.++.+.+||+. +++...+.
T Consensus 108 ------------------------------~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~------ 148 (582)
T 3o4h_A 108 ------------------------------AVK--PMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA------ 148 (582)
T ss_dssp ------------------------------TSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE------
T ss_pred ------------------------------CCC--CceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee------
Confidence 111 2234577787753 344555556699998 44444331
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCC----CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~ 338 (501)
.+.. .+++|+||| +.|++++.+ +.|++||+.+++.. .+.. |...+..++|+||
T Consensus 149 --~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~-------------~~~~~~~~~~SpD 205 (582)
T 3o4h_A 149 --RLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDS-------------GEGSFSSASISPG 205 (582)
T ss_dssp --EESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----EECC-------------SSCEEEEEEECTT
T ss_pred --cCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----Eeec-------------CCCccccceECCC
Confidence 1222 789999999 999988777 78999999887532 2222 4567899999999
Q ss_pred CCEEEEEc-CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 339 GQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 339 ~~~l~~~~-~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
|++|++++ ++ .|++||+.+ ++.. .+..+...+.... ..+....+|+|||.++++++.||.++||++
T Consensus 206 G~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-- 274 (582)
T 3o4h_A 206 MKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARREGRSAVFID-- 274 (582)
T ss_dssp SCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred CCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence 99999664 36 899999975 5555 5555544331000 000012339999999999999999999999
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce--eec
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN 460 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~iw 460 (501)
++.. ......+..++++ ++++ +++++.+.. .+|
T Consensus 275 g~~~----~~~~~~v~~~~~s---dg~~-----l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 275 GERV----EAPQGNHGRVVLW---RGKL-----VTSHTSLSTPPRIV 309 (582)
T ss_dssp TEEE----CCCSSEEEEEEEE---TTEE-----EEEEEETTEEEEEE
T ss_pred CCee----ccCCCceEEEEec---CCEE-----EEEEcCCCCCCeEE
Confidence 5222 2344567777777 5566 677666655 565
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-19 Score=168.29 Aligned_cols=216 Identities=12% Similarity=0.092 Sum_probs=136.6
Q ss_pred cceeEEEEeecCCCCEEEEeeC---CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~---d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
..+..++|+ |+|+ |++++. ++.|++|++.+++.....
T Consensus 40 ~~p~~~a~s--pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~------------------------------------- 79 (347)
T 3hfq_A 40 QNPTYLALS--AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN------------------------------------- 79 (347)
T ss_dssp SCCCCEEEC--TTCE-EEEEEEETTEEEEEEEEEETTEEEEEE-------------------------------------
T ss_pred CCcceEEEc--cCCe-EEEEEecCCCceEEEEEecCCcEEEee-------------------------------------
Confidence 557889997 7888 555543 689999999766533221
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCC----CC
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN----MD 264 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~ 264 (501)
.+ ..+...+..++|+|+|++|+++ .++.|.+|++...+............ ..
T Consensus 80 ---------------------~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~ 137 (347)
T 3hfq_A 80 ---------------------TV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE 137 (347)
T ss_dssp ---------------------EE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred ---------------------ee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence 10 2345677889999999988775 68999999996443322211111000 01
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc-CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.....+.+++|+|+| +++++...++.|.+||+. +++... ...+.. ........++|+|||++|+
T Consensus 138 ~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~--~~~~~~------------~~g~~p~~~~~spdg~~l~ 202 (347)
T 3hfq_A 138 QDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSE--QSVLTM------------EAGFGPRHLVFSPDGQYAF 202 (347)
T ss_dssp CSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEE--EEEEEC------------CTTCCEEEEEECTTSSEEE
T ss_pred ccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEE--eeeEEc------------CCCCCCceEEECCCCCEEE
Confidence 123458899999999 777776778999999998 443211 011111 0023567899999999777
Q ss_pred EE-c-CCcEEEEEeeCC-CCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE-EEEeCCCeEEEEecCC
Q 010801 344 SR-D-YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGV 415 (501)
Q Consensus 344 ~~-~-~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~iwd~~~ 415 (501)
++ . ++.|++|++... ++. +..+....... . ....+..++|+|||++| ++...++.|.+|++..
T Consensus 203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~------~---~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY------T---AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC------C---SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC------C---CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 65 3 489999999742 222 12222211100 0 00112689999999977 5566789999999973
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-20 Score=188.41 Aligned_cols=325 Identities=10% Similarity=0.048 Sum_probs=195.3
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
....+++|+|||++|+++ ||+|++||+.+++.. ..+.+|... ..
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------------~~~~~~~~~-------~~ 60 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------------VFLENSTFD-------EF 60 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------------EEECTTTTT-------TC
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------------EEEechhhh-------hh
Confidence 346689999999999986 899999999988642 445666510 00
Q ss_pred ccceeEEEEeecCCCCEEEEeeCC---------CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d---------~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
......++|| |||++|+.++.+ +.+.+||+.+++...+
T Consensus 61 ~~~~~~~~~S--pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l------------------------------- 107 (740)
T 4a5s_A 61 GHSINDYSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------------------------------- 107 (740)
T ss_dssp CSCCCEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------------------------------
T ss_pred cccccceEEC--CCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc-------------------------------
Confidence 0123457887 899999999876 4556888887764332
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..|...+...+|||||+.|+.+.++.|++|++.. +...++. .
T Consensus 108 -------------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~-~~~~~lt------~ 149 (740)
T 4a5s_A 108 -------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN-LPSYRIT------W 149 (740)
T ss_dssp -------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTT-SCCEECC------S
T ss_pred -------------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECCC-CceEEEc------C
Confidence 3556678999999999999998788999999984 4333321 2
Q ss_pred CCcccc-----------------eEEEEEecCCCcEEEEEeCCCe-E---------------------------------
Q 010801 264 DDLTEV-----------------ITSAEFHPIYCNLLAYSSSRGF-V--------------------------------- 292 (501)
Q Consensus 264 ~~~~~~-----------------v~~v~~~p~~~~~l~~~~~dg~-i--------------------------------- 292 (501)
.++... ...+.|+||| +.|+.++.|.. +
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~ 228 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV 228 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence 222222 2358999999 88888764332 4
Q ss_pred --EEEEccC---CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----C-CcEEEEEeeCCCC--
Q 010801 293 --RLVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST-- 360 (501)
Q Consensus 293 --~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~-~~i~lwd~~~~~~-- 360 (501)
++||+.+ ++... ...+.. ...+.+|...+..++|+|||+.++... + ..|++||+.+ ++
T Consensus 229 ~l~v~d~~~~~~~~~~~--~~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~ 298 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNAT--SIQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGR 298 (740)
T ss_dssp EEEEEETTSCCSSSCCC--EEEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTE
T ss_pred EEEEEECCCCCCCCcce--EEEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Cccc
Confidence 4444444 31000 000000 000113567799999999999776542 1 4799999986 54
Q ss_pred ----ceeEe--eccccccccccccCCCCCcceeeEEEEcCCCcEEE-EEeC-C--CeEEEEecCCCCcceEEEecccCcc
Q 010801 361 ----PVATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-S--NLLRIFSHGVGSAGGITVEAGKNEN 430 (501)
Q Consensus 361 ----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v 430 (501)
.+..+ ..+...+.. .......|+|||+.|+ ..+. + ..|++|++.++.. ..+......+
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~v 366 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWEV 366 (740)
T ss_dssp EEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSCE
T ss_pred cceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEEE
Confidence 12222 334333210 0003688999999877 6654 3 4588888876533 3333333334
Q ss_pred cceeeccCCccccCccceeeeecc----cce-eecccc--CC-cc-ccc----ccCCCeEEEEEccCCCEEEEeeCC
Q 010801 431 RKPILQAAPRARRSSLSNLTRGLY----RQA-HENSSS--GH-HE-LSY----NLSSKLLHLAWHPTTNLIACANGN 494 (501)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~-~iw~~~--~~-~~-~~~----~~~~~i~~~~~sp~~~~la~~~~~ 494 (501)
..+.. +. .+.+ ..++.. .+. .||..+ +. .. .+. .........+|+|++++++....+
T Consensus 367 ~~~~~-~d-~~~i-----~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 367 IGIEA-LT-SDYL-----YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp EEEEE-EC-SSEE-----EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred EEEEE-Ee-CCEE-----EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence 43332 32 2222 233332 334 777322 11 11 111 123567889999999988766533
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-19 Score=171.30 Aligned_cols=229 Identities=9% Similarity=0.096 Sum_probs=148.8
Q ss_pred cccccceEEEEEccCCCEEE----EEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~la----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
+.|...|++++|+|+|++|| +|+.|+.|+|||+.++... .............+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~----------------~~~~~~~~~~~~~~~~h~--- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE----------------AKQQKRPFAYHKLLKDAG--- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCT----------------TCSSCCCSEEEECCCSGG---
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccC----------------CcCCcceeeeeeccCCCC---
Confidence 44667899999999999999 7889999999998764110 000000122345677888
Q ss_pred hhccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
+.|.+++|+ |+ +.+|++++.||+|++||++++......
T Consensus 150 ---------~~V~~v~~~--p~~~~~las~s~Dg~v~iwD~~~~~~~~~~------------------------------ 188 (434)
T 2oit_A 150 ---------GMVIDMKWN--PTVPSMVAVCLADGSIAVLQVTETVKVCAT------------------------------ 188 (434)
T ss_dssp ---------GSEEEEEEC--SSCTTEEEEEETTSCEEEEEESSSEEEEEE------------------------------
T ss_pred ---------CceEEEEEC--CCCCCEEEEEECCCeEEEEEcCCCcceeec------------------------------
Confidence 889999998 55 789999999999999999876432111
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
.+|...|.+++|+|+|++|++| .|+.|++||.+ ... ...+......
T Consensus 189 -------------------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~ 235 (434)
T 2oit_A 189 -------------------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFY 235 (434)
T ss_dssp -------------------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTC
T ss_pred -------------------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-cccccCCccc
Confidence 4678899999999999999999 99999999998 332 2222111111
Q ss_pred CCCcccceEEEEEecCCCcEEEE-EeCCC------eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~-~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 335 (501)
...|...|.+++|++++ .++++ .+.+| .+++||++..+... ...+..+..... .+.+...+...+.+
T Consensus 236 ~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~~---~~~~~r~~~~~~~~ 309 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPCY---GSCTERQHHYYLSY 309 (434)
T ss_dssp CTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSSC---CCCSSSCCCEEEEE
T ss_pred CCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCCC---CCCCCcCcceeeeh
Confidence 12345589999999987 66544 33443 38999998653210 012222111000 00011122234445
Q ss_pred eeCCCEEEEEc-C-CcEEEEEee
Q 010801 336 ANDGQHLLSRD-Y-MNLKLWDIR 356 (501)
Q Consensus 336 sp~~~~l~~~~-~-~~i~lwd~~ 356 (501)
.++.+++++++ . +.|.|....
T Consensus 310 l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 310 IEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EGGGTEEEEEETTCSBCEEEEEC
T ss_pred hccCCEEEEecCCCCceeEEEec
Confidence 57777777654 2 667777654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-19 Score=172.56 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=151.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...++.+++++++.+|++|+.|+ ++||+........... .. .... .... ....+.
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---------------~~-~~~~-~~~~-------~~~~~~ 90 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---------------DD-PNKI-VDKV-------QGLLVP 90 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---------------CC-TTCE-EECC-------CCEEEC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---------------cC-cccc-cccC-------cccccc
Confidence 45689999999999999999887 9999865321100000 00 0000 0000 001111
Q ss_pred cccceeEEEEeecCCCCEEE----EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~----s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.+.|.+++|+ +++++|+ +++.|++|++||+.++...... .
T Consensus 91 ~~~~v~~l~~s--pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~---~------------------------------ 135 (434)
T 2oit_A 91 MKFPIHHLALS--CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ---Q------------------------------ 135 (434)
T ss_dssp CSSCEEEEEEC--TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS---S------------------------------
T ss_pred CCCcccEEEEc--CCCCEEEEEEeccCCCceEEEEEccccccCCcC---C------------------------------
Confidence 22779999998 7899999 7889999999999865200000 0
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
... ....+.+ .+|...|.+++|+|+ +.+|+++ .|++|++||++.. ..... ..+
T Consensus 136 -----~~~-----------~~~~~~~-~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~-------~~~ 190 (434)
T 2oit_A 136 -----KRP-----------FAYHKLL-KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCA-------TLP 190 (434)
T ss_dssp -----CCC-----------SEEEECC-CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEE-------EEC
T ss_pred -----cce-----------eeeeecc-CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceee-------ccC
Confidence 000 0011112 689999999999998 7889998 9999999999954 33221 345
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|...|.+++|+|+| ++|++|+.||.|++||++ ++.. ..+..+.. ....|...+.+++|++++.++++.
T Consensus 191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~~------~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPPF------YESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCTT------CCTTSCEEEEEEEEEETTEEEEEE
T ss_pred CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCcc------cCCCCceeEEEEEEecCceEEEEE
Confidence 88899999999998 999999999999999998 3221 22222100 001234579999999999888653
Q ss_pred c--CC------cEEEEEeeC
Q 010801 346 D--YM------NLKLWDIRM 357 (501)
Q Consensus 346 ~--~~------~i~lwd~~~ 357 (501)
+ +| .+++|+++.
T Consensus 259 ~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 259 AAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EETTCCSSSCCEEEEEECCC
T ss_pred ccCCCccCCCCceEEEEecc
Confidence 2 22 389999975
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-20 Score=171.55 Aligned_cols=233 Identities=13% Similarity=0.008 Sum_probs=160.6
Q ss_pred ceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe----------
Q 010801 220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---------- 287 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---------- 287 (501)
.+..++|+|+++.+++ + .++.|.+||+.+ ++....+.... ...+...+..++|+|++ +.|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCC--cccccccccceEECCCC-CEEEEEecccccccccc
Confidence 3677999999987654 5 789999999984 44443322110 00023356789999999 8888876
Q ss_pred --CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEe
Q 010801 288 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 288 --~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~ 365 (501)
.++.|.+||+.+++.. ..+.. ...+..++|+|+|++|+++ ++.|++||+.+ ++.+..+
T Consensus 111 ~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~ 170 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDK 170 (337)
T ss_dssp EECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEE
T ss_pred cccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeee
Confidence 5799999999876543 22322 2457889999999988887 58999999985 6666666
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-C-----------------------eEEEEecCCCCcceE
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N-----------------------LLRIFSHGVGSAGGI 421 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g-----------------------~i~iwd~~~~~~~~~ 421 (501)
..+... ..+.|+|+++.|+..+.+ + .|.+||+.+++....
T Consensus 171 ~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 171 PIQSWE----------------AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp CSTTTT----------------TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred eccccC----------------CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence 544311 124778888766544432 2 478999998866545
Q ss_pred EEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC-cccccccCCCeEEEEEccCCCEEEEee-CCeEEE
Q 010801 422 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 498 (501)
Q Consensus 422 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~-~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i 498 (501)
.+..+...+..++++| ++++ ++.+ ++. .+|+.... ..........+.+++|+|+|++|++++ ++.+++
T Consensus 235 ~~~~~~~~~~~~~~s~--dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v 305 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNP--AKTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305 (337)
T ss_dssp EEEECSSCEEEEEECT--TSSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred ecCCCCCceeeEEECC--CCCE-----EEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEE
Confidence 5666666777899998 6666 6666 566 88855422 222233445678999999999888776 566999
Q ss_pred EeC
Q 010801 499 HYA 501 (501)
Q Consensus 499 ~~~ 501 (501)
|++
T Consensus 306 ~d~ 308 (337)
T 1pby_B 306 YDA 308 (337)
T ss_dssp EET
T ss_pred EEC
Confidence 873
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-19 Score=166.76 Aligned_cols=282 Identities=9% Similarity=0.059 Sum_probs=189.0
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCCcchhhcccccccc-ceeEEEEe
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWC 122 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~V~~v~~~ 122 (501)
++|++++.++.|.+||..+++. ...+. ++. . .+..++|+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~s 42 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADA------------GPTPMVPMVA 42 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTC------------TTCCCCEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------------EEEEEcCCC------------CCCccceEEc
Confidence 4789999999999999987653 23332 221 1 47889997
Q ss_pred ecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec----------
Q 010801 123 AAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT---------- 191 (501)
Q Consensus 123 ~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 191 (501)
|++++++ ++..++.|.+||+.+++........... .....+..+.++++...++.+...
T Consensus 43 --~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 43 --PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp --TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred --CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--------cccccccceEECCCCCEEEEEecccccccccccc
Confidence 7887665 4556889999999988766544322100 011134455666777666555311
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
.++.+.+||+.... ....+ . ....+.+++|+|+++.++++ ++.|.+||+. .++....+. ...+...
T Consensus 113 ~~~~i~v~d~~~~~---~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~-~~~~~~~~~-----~~~~~~~-- 178 (337)
T 1pby_B 113 QPTRVALYDAETLS---RRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPE-AGTLVEDKP-----IQSWEAE-- 178 (337)
T ss_dssp CCCEEEEEETTTTE---EEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETT-TTEEEEEEC-----STTTTTT--
T ss_pred cCceEEEEECCCCc---EEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECC-CCcEeeeee-----ccccCCC--
Confidence 36899999998643 33333 1 23457889999999988888 6889999998 444444321 1111122
Q ss_pred EEEEecCCCcEEEEEeC-CC-----------------------eEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 272 SAEFHPIYCNLLAYSSS-RG-----------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~-dg-----------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
+.|+|++ ..++..+. ++ .|.+||+.+++.. .... ..+.
T Consensus 179 -~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~~-----------~~~~ 240 (337)
T 1pby_B 179 -TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MREV-----------RIMD 240 (337)
T ss_dssp -TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEEE-----------EECS
T ss_pred -ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eeec-----------CCCC
Confidence 2678888 54444332 23 4688998877542 1111 1234
Q ss_pred cceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCe
Q 010801 328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 407 (501)
..+..++|+|||++++++ ++.|++||+.+ ++.+..+..+... .+++|+|+|++|++++.++.
T Consensus 241 ~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----------------YSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------------CEEEECTTSCEEEEESBSSE
T ss_pred CceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----------------eeEEECCCCCEEEEEcCCCc
Confidence 567889999999999988 69999999985 6766666544332 58999999999999999999
Q ss_pred EEEEecCCCCcceEEEecc
Q 010801 408 LRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~ 426 (501)
|++||+.+++.+ ..+..+
T Consensus 303 i~v~d~~~~~~~-~~~~~~ 320 (337)
T 1pby_B 303 LAAYDAETLEKK-GQVDLP 320 (337)
T ss_dssp EEEEETTTCCEE-EEEECG
T ss_pred EEEEECcCCcEE-EEEEcC
Confidence 999999988443 555444
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=163.21 Aligned_cols=268 Identities=11% Similarity=0.062 Sum_probs=165.2
Q ss_pred cccceEEEEEccCCCEEEEEecC----CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
|...+..++|+|||++|++++.+ +.|.+|++....- ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~----- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG----- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence 56778889999999999998875 7999999875211 122233333333
Q ss_pred ccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
.....+++ ++++|++++ .++.|.+|++...........
T Consensus 100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------------ 138 (361)
T 3scy_A 100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------------ 138 (361)
T ss_dssp -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE------------------------------
T ss_pred -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccce------------------------------
Confidence 44556665 567777766 688999999975332111000
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCe----e-eeee-e
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ----C-FNIV-D 257 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~----~-~~~~-~ 257 (501)
...... .... ....+...+.+++|+|+|++++++ .++.|.+|++..... . +... .
T Consensus 139 ------------~~~~~g----~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 139 ------------VIEFKG----SGPD-KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ------------EEECCC----CCSC-TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ------------eEEccC----CCCC-ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 000000 0000 001234457889999999977654 689999999874332 1 1100 0
Q ss_pred cCCCCCCCcccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe
Q 010801 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 258 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
... ....+...+..++|+|+| +++++++ .++.|.+||+.++.... ...+.. ...+......++|+
T Consensus 202 ~~~-~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~~~~~i~~s 267 (361)
T 3scy_A 202 PEA-FKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQGSGDIHLS 267 (361)
T ss_dssp EEE-EECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCCCEEEEEEC
T ss_pred ccc-eecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCCCcccEEEC
Confidence 000 012234457899999999 8777666 68999999998664321 011111 01122346799999
Q ss_pred eCCCEEEEE-c--CCcEEEEEeeCC-CC--ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEE
Q 010801 337 NDGQHLLSR-D--YMNLKLWDIRMD-ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR 409 (501)
Q Consensus 337 p~~~~l~~~-~--~~~i~lwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~ 409 (501)
|||++|+++ . ++.|.+|++... ++ .+..+.. .... ..++|+|||++|++++ .++.|.
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~---------------~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP---------------RNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC---------------CEEEECTTSCEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC---------------ceEEECCCCCEEEEEECCCCCEE
Confidence 999988654 3 378999999621 33 2333332 1111 5899999999888887 679999
Q ss_pred EEecC
Q 010801 410 IFSHG 414 (501)
Q Consensus 410 iwd~~ 414 (501)
+|+++
T Consensus 332 v~~~d 336 (361)
T 3scy_A 332 IFERD 336 (361)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 97655
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-20 Score=170.79 Aligned_cols=260 Identities=9% Similarity=0.050 Sum_probs=172.4
Q ss_pred EEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 37 ~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
.+++++++.++++++.+++|++||+.+++. ...+..+. ...+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~-----------~~~~ 45 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPD-----------KFGP 45 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSS-----------CCSS
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------EEEEecCC-----------CCCC
Confidence 457888999999999999999999987653 23333221 0257
Q ss_pred eEEEEeecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
..++|+ |++++++ +...++.|.+||+.+++..........+
T Consensus 46 ~~~~~s--~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~------------------------------------ 87 (349)
T 1jmx_B 46 GTAMMA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------ 87 (349)
T ss_dssp CEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred ceeEEC--CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc------------------------------------
Confidence 789997 7887665 4457899999999887755433111000
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC------------CeEEEEECCCCCeeeeeeecCCCC
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d------------~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
......+..++|+|+|++++++ .+ +.|.+||+.+.. ....+ .
T Consensus 88 -------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~-----~ 142 (349)
T 1jmx_B 88 -------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPV-----R 142 (349)
T ss_dssp -------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCS-----E
T ss_pred -------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-cccee-----e
Confidence 0012346789999999999987 54 999999998422 21110 0
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc-ccC--------------CC--------
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESH--------------GS-------- 319 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~--------------~~-------- 319 (501)
...+...+.+++|+|++ + +++++. .|.+||+.+++... .+..+. ..+ ..
T Consensus 143 ~~~~~~~~~~~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 143 TFPMPRQVYLMRAADDG-S-LYVAGP--DIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp EEECCSSCCCEEECTTS-C-EEEESS--SEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eccCCCcccceeECCCC-c-EEEccC--cEEEEeCCCCceec----cccccccCCccccCccceeeecCCCcceeEEeee
Confidence 11123357889999999 7 555443 49999998876432 111100 000 00
Q ss_pred --------------------------------cceeeecccceeEEEEee-CCCEEEEEcCCcEEEEEeeCCCCceeEee
Q 010801 320 --------------------------------KSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 320 --------------------------------~~~~~~h~~~i~~~~~sp-~~~~l~~~~~~~i~lwd~~~~~~~~~~~~ 366 (501)
...+..+...+..++|+| ++++++++ ++.|++||+.+ ++.+..+.
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~ 292 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAAN 292 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEE
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEc
Confidence 000011223567888999 99999988 79999999986 77666665
Q ss_pred ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
..... .+++|+|++++|++++.++.|++||+++++.+ ..++
T Consensus 293 ~~~~~----------------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~-~~~~ 333 (349)
T 1jmx_B 293 LDHTY----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV-KNIK 333 (349)
T ss_dssp CSSCC----------------CEEEECSSSSCEEEESBSSEEEEEETTTTEEE-EEEE
T ss_pred CCCCc----------------cceEECCCCCEEEEecCCCeEEEEecccccee-eeee
Confidence 43322 58999999998888888999999999887433 4443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-18 Score=160.90 Aligned_cols=212 Identities=8% Similarity=0.067 Sum_probs=133.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCC----CeEEEEeccc--cceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d----~~i~lw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+..++|+ |++++|++++.+ +.|.+|++.. ++.....
T Consensus 50 ~~p~~l~~s--pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~---------------------------------- 93 (361)
T 3scy_A 50 ANPSYLIPS--ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN---------------------------------- 93 (361)
T ss_dssp SCCCSEEEC--TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE----------------------------------
T ss_pred CCCceEEEC--CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee----------------------------------
Confidence 667889997 899999998875 7999998865 3322211
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeee---ecC---
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV---DMK--- 259 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~---~~~--- 259 (501)
.. ..+......+++ ++++++++ .++.|.+|++...+...... ...
T Consensus 94 ------------------------~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 94 ------------------------TQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp ------------------------EE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred ------------------------Ee-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 01 223445667777 77777765 78999999997444322110 000
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcc------cccc--cceeecccccCCCcceeeecccce
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL------CDHS--ARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
+.....+...+.+++|+|+| +++++++ .++.|.+|++..... .... ...... .+....
T Consensus 147 ~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~ 213 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGP 213 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCE
T ss_pred CCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCC
Confidence 00011223456889999999 7555544 589999999876431 1000 001111 113457
Q ss_pred eEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC--
Q 010801 331 SDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-- 404 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-- 404 (501)
..++|+|||++++++. ++.|.+||+.+ ++. +..+....... .....++|+|||++|+++..
T Consensus 214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~------------~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 214 RHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNA------------QGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCC------------CCEEEEEECTTSSEEEEEECSS
T ss_pred eEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCC------------CCcccEEECCCCCEEEEECCCC
Confidence 8899999999887664 49999999984 443 22222211100 01158999999998876655
Q ss_pred CCeEEEEecC
Q 010801 405 SNLLRIFSHG 414 (501)
Q Consensus 405 dg~i~iwd~~ 414 (501)
++.|.+|++.
T Consensus 281 ~~~i~v~~~~ 290 (361)
T 3scy_A 281 ADGVAIFKVD 290 (361)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEEEc
Confidence 4899999996
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-18 Score=162.04 Aligned_cols=241 Identities=11% Similarity=0.058 Sum_probs=166.7
Q ss_pred cccceEEEEEccCCCEEEEE-ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcc-hhhcc
Q 010801 31 DVDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE-FDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~ 108 (501)
....+..++|+|+|++++++ ..++.|.+||..+++.. ..+..+... ....
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~~~~~~~~- 138 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK---------------------------GRLVLDDRKRTEEV- 138 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------------------------EEEESCCCCCCSSC-
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE---------------------------EEEecCCCcccccc-
Confidence 34567889999999966554 45799999999877542 223322200 0000
Q ss_pred ccccccceeEEEEeecCCCCEEEEee--CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s--~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
....+.+++|+ ++++++++++ .++.|.+||..+++.....
T Consensus 139 ---~~~~~~~~~~s--~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------- 180 (353)
T 3vgz_A 139 ---RPLQPRELVAD--DATNTVYISGIGKESVIWVVDGGNIKLKTAI--------------------------------- 180 (353)
T ss_dssp ---CCCEEEEEEEE--TTTTEEEEEEESSSCEEEEEETTTTEEEEEE---------------------------------
T ss_pred ---CCCCCceEEEC--CCCCEEEEEecCCCceEEEEcCCCCceEEEe---------------------------------
Confidence 00126789998 7888777765 4789999999887755432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+...+.+++|+|+++.++++ .++.|.+||.. .++....+... ..+
T Consensus 181 ----------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~---~~~ 228 (353)
T 3vgz_A 181 ----------------------------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL---DDG 228 (353)
T ss_dssp ----------------------------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC---CSS
T ss_pred ----------------------------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC---CCC
Confidence 2233456778999999999998 89999999998 44444433221 223
Q ss_pred cccceEEEEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+...+..++|+|++ +.+++++. ++.|.+||+.+++.. ..+.. .....++|+|+|+++++
T Consensus 229 ~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~v 288 (353)
T 3vgz_A 229 KEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAYV 288 (353)
T ss_dssp SCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEEE
T ss_pred CCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEEE
Confidence 45568899999999 76555554 599999999887643 23332 12256999999997665
Q ss_pred Ec--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 345 RD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 345 ~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
+. ++.|.+||+.+ ++.+..+...... ..++|+|+|++|+.+..++
T Consensus 289 ~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 289 THRQAGKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EETTTTEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred EECCCCeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence 43 49999999986 7777777654432 6899999999777666554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=171.03 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=152.8
Q ss_pred EEEccCCCEEEEEec-CCc--EEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccc
Q 010801 38 IEFDKTGDYLAVGDR-GGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (501)
Q Consensus 38 v~~s~~g~~latg~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (501)
.+|||||++||.++. +|. |.+||+.+++. .....+|. .
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---------------------------~~lt~~~~------------~ 81 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA---------------------------TQLTEGRG------------D 81 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE---------------------------EECCCSSC------------B
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce---------------------------EEeeeCCC------------C
Confidence 889999999999887 674 77888877643 23334454 4
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.+..++|+ |+++.|+.++.++.|++||+.+++...+..
T Consensus 82 ~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~---------------------------------------- 119 (388)
T 3pe7_A 82 NTFGGFLS--PDDDALFYVKDGRNLMRVDLATLEENVVYQ---------------------------------------- 119 (388)
T ss_dssp CSSSCEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEE----------------------------------------
T ss_pred CccceEEc--CCCCEEEEEeCCCeEEEEECCCCcceeeee----------------------------------------
Confidence 45567897 899999999999999999999887554331
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEE--EecCCCCEEEEE-----------------------cCCeEEEEECCCC
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSI--SNNSDCETFVSA-----------------------DDLRINLWNLEIS 249 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~~~l~~~-----------------------~d~~i~iwd~~~~ 249 (501)
.+...+... .++|+++.++.. .+..|.+||+.+
T Consensus 120 ---------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~- 177 (388)
T 3pe7_A 120 ---------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT- 177 (388)
T ss_dssp ---------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT-
T ss_pred ---------------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC-
Confidence 122222222 347888877631 346799999984
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEec-CCCcEEEEEeCC------CeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
++... +..+...+..++|+| +| +.|+....+ ..|.++|...+... .+..+.
T Consensus 178 g~~~~--------l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-----~l~~~~-------- 235 (388)
T 3pe7_A 178 GESTV--------ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMR-----KVKTHA-------- 235 (388)
T ss_dssp CCEEE--------EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCE-----ESCCCC--------
T ss_pred CceEE--------eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceE-----EeeeCC--------
Confidence 44333 233556789999999 98 888777653 36777887654321 111100
Q ss_pred eeecccceeEEEEeeCCCEEEEEc--C-C---cEEEEEeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcC
Q 010801 323 FTEIIASISDIKFANDGQHLLSRD--Y-M---NLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~l~~~~--~-~---~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 394 (501)
....+..++|+|||+.|+..+ + + .|++||+.+ ++. +..+.++..... . .....|+|
T Consensus 236 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~---------~---~~~~~~sp 299 (388)
T 3pe7_A 236 ---EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS---------N---YDGSLMVG 299 (388)
T ss_dssp ---TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE---------C---TTSSEEEE
T ss_pred ---CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee---------c---CCCCeEcc
Confidence 012477889999999876532 2 2 399999975 443 222222111000 0 02357999
Q ss_pred CCcEEEEE---------eCCCeEEEEecCCC
Q 010801 395 DGLHFATG---------SYSNLLRIFSHGVG 416 (501)
Q Consensus 395 ~~~~l~s~---------~~dg~i~iwd~~~~ 416 (501)
||+.|+.. ..+..|++||+.++
T Consensus 300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EECCC------------CCCCEEEEEETTTT
T ss_pred CCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 99988754 45678999999876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=163.27 Aligned_cols=259 Identities=10% Similarity=-0.014 Sum_probs=164.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEec-CCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+..++|+|+|++|++++.+ .|.+|++. +++.. .......+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~----------- 82 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG----------- 82 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence 468899999999999999887 99999987 55321 11111111
Q ss_pred cccceeEEEEeecCCCCE--EEEee-------------CCCeEEEEeccc-cceeeeeccCCCcccccccccccccCccc
Q 010801 112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~--l~s~s-------------~d~~i~lw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (501)
+.+..++|+ |+|++ ++++. .++++.+|++.. ++.....
T Consensus 83 --g~~~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~---------------------- 136 (365)
T 1jof_A 83 --GHPRANDAD--TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV---------------------- 136 (365)
T ss_dssp --SSGGGGCTT--SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE----------------------
T ss_pred --CCCccEEEC--CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE----------------------
Confidence 224557786 78884 44543 588899998863 4432211
Q ss_pred cCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECC-CCCee
Q 010801 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE-ISDQC 252 (501)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~-~~~~~ 252 (501)
..+...+...+.+++|+|+|++++++ .++.|++|+++ ++. .
T Consensus 137 -----------------------------------~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~-~ 180 (365)
T 1jof_A 137 -----------------------------------QNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-V 180 (365)
T ss_dssp -----------------------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-E
T ss_pred -----------------------------------eeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC-E
Confidence 00001345678899999999988876 57899999997 333 2
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEcc--CCcccccccceeecccccCCCcceeeeccc-
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIA- 328 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 328 (501)
...... ....|...+..++|+|+| ++|++++. ++.|.+|++. +++.... ...+.. .+. .+.+|..
T Consensus 181 ~~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~---~~~---~~~g~~~~ 249 (365)
T 1jof_A 181 ELVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPL---IPP---GIPDRDPE 249 (365)
T ss_dssp EEEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEES---SCT---TCCCBCTT
T ss_pred EEeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEc-cceEEc---CCC---CcCCcccc
Confidence 111100 122245568999999999 88877765 7899999875 3432100 001111 000 0112222
Q ss_pred -----ceeEEE-EeeCCCEEEEEc--CC-----cEEEEEeeCCCCceeE---eeccccccccccccCCCCCcceeeEEEE
Q 010801 329 -----SISDIK-FANDGQHLLSRD--YM-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 329 -----~i~~~~-~sp~~~~l~~~~--~~-----~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.+..++ |+|||++|+++. .+ .|.+|++...++.... ...+.... ..++|
T Consensus 250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a~ 314 (365)
T 1jof_A 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNAV 314 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCCE
T ss_pred cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------cccee
Confidence 578999 999999887653 23 8999999632443321 22222211 47899
Q ss_pred cC---CCcEEEEEeCC-CeEEEEecCCC
Q 010801 393 SG---DGLHFATGSYS-NLLRIFSHGVG 416 (501)
Q Consensus 393 s~---~~~~l~s~~~d-g~i~iwd~~~~ 416 (501)
+| ||++|++++.+ +.|.+|+++..
T Consensus 315 sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 99 89999998864 89999999765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=179.18 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=172.7
Q ss_pred eEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcce
Q 010801 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (501)
..++|+ |++++ +..+.|++|++||+.+++...+.
T Consensus 19 ~~~~~s--~dg~~-~~~~~d~~i~~~~~~~g~~~~~~------------------------------------------- 52 (719)
T 1z68_A 19 FFPNWI--SGQEY-LHQSADNNIVLYNIETGQSYTIL------------------------------------------- 52 (719)
T ss_dssp CCCEES--SSSEE-EEECTTSCEEEEESSSCCEEEEE-------------------------------------------
T ss_pred CccEEC--CCCeE-EEEcCCCCEEEEEcCCCcEEEEE-------------------------------------------
Confidence 367897 78854 44557999999999988755443
Q ss_pred EEEeccCceeeeeeEeecCCccc---ceEEEEecCCCCEEEEE-c---------CCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 197 KIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 197 ~~w~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..+.. .+.+++|+|||++|+++ . ++.|++||+. +++..... .+
T Consensus 53 ------------------~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~g~~~~~~-----~l 108 (719)
T 1z68_A 53 ------------------SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-NGEFVRGN-----EL 108 (719)
T ss_dssp ------------------CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECCSS-----CC
T ss_pred ------------------ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-CCccccce-----ec
Confidence 22222 48899999999999987 5 6899999998 44442100 12
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce---------eEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI---------SDIK 334 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i---------~~~~ 334 (501)
...+..++|+||| +.|+++. ++.|++||+.+++.. ++... ......+.||...+ .+++
T Consensus 109 ---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~----~l~~~----~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 109 ---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPF----QITFN----GRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp ---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCE----ECCCC----CBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred ---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcE----EEecC----CCcCCeEcccccceeeeecccCcccEE
Confidence 2457889999999 8888875 789999999887542 11111 00011222333222 5899
Q ss_pred EeeCCCEEEEEc-C-C---------------------------------cEEEEEeeCCCCce--eE------eeccccc
Q 010801 335 FANDGQHLLSRD-Y-M---------------------------------NLKLWDIRMDSTPV--AT------FKIHEHL 371 (501)
Q Consensus 335 ~sp~~~~l~~~~-~-~---------------------------------~i~lwd~~~~~~~~--~~------~~~~~~~ 371 (501)
|+|||++|++++ + + .|++||+.+ ++.. .. +.++...
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcce
Confidence 999999999764 2 2 677888864 3321 11 1123222
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCC----CeEEEEe----cCCCCcceEEE----ecccCccc-----cee
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFS----HGVGSAGGITV----EAGKNENR-----KPI 434 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~----~~~~~~v~-----~~~ 434 (501)
+..++|+||++++++.... ..|.+|| +.+++.. ..+ ..|...+. .+.
T Consensus 255 ---------------~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 318 (719)
T 1z68_A 255 ---------------FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPV 318 (719)
T ss_dssp ---------------EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCE
T ss_pred ---------------EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccE
Confidence 2689999999887775432 3488899 7766433 222 46777776 788
Q ss_pred eccCCccccCccceeeeecccce-eec--ccc-CCcccccccCCCeEEEEEccCCCEEEEeeC
Q 010801 435 LQAAPRARRSSLSNLTRGLYRQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 493 (501)
|+| +|+. ..+++...++. .+| +.. .....+......+..+.++ +++.|+..+.
T Consensus 319 ~sp--dg~~---l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 319 FSY--DAIS---YYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp ECT--TSSC---EEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred ECC--CCCe---EEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 988 6654 01233445555 666 332 2233344555667788777 8887776653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-17 Score=167.70 Aligned_cols=295 Identities=9% Similarity=0.029 Sum_probs=180.8
Q ss_pred ccccceEEEEEccCCCEEEEE--ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.|...+..++|++++-+++.. +.++...||....+.. ...+..|.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~l~~~~------ 67 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---------------------------EESALPAP------ 67 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---------------------------EEESSCTT------
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---------------------------cceeCCCC------
Confidence 478899999999887667766 5688999999643321 13344444
Q ss_pred ccccccccee---------EEEEeecCCCCE-EEEeeC-CCeEEEEecc--c-cceeeeeccCCCcccccccccccccCc
Q 010801 108 KSLEIEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 108 ~~~~~~~~V~---------~v~~~~~~~~~~-l~s~s~-d~~i~lw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+. ...|+.+|||+. |+.++. +..|.++++. + +....+....
T Consensus 68 ------~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~----------------- 124 (662)
T 3azo_A 68 ------WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS----------------- 124 (662)
T ss_dssp ------CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----------------
T ss_pred ------ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----------------
Confidence 2333 556653478888 776653 5566666665 2 4322211000
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC----------CeEE
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRIN 242 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----------~~i~ 242 (501)
...|...+.+++|+|||+.|+++ .+ ..|+
T Consensus 125 ----------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 125 ----------------------------------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp ----------------------------------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred ----------------------------------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence 01256678899999999999887 55 5899
Q ss_pred EEECCCC-----CeeeeeeecCCCCCC-CcccceEEEEEecCCCcEEEEEeCC--------CeEEEEEcc-CCccccccc
Q 010801 243 LWNLEIS-----DQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMR-QSALCDHSA 307 (501)
Q Consensus 243 iwd~~~~-----~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~~wd~~-~~~~~~~~~ 307 (501)
+||+... +.... +. .+...+..++|+||| +.|+.++.+ ..|.+||+. ++... ...
T Consensus 165 ~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~ 234 (662)
T 3azo_A 165 AVPLDGSAAADRSAVRE--------LSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTR 234 (662)
T ss_dssp EEETTSTTTTCGGGSEE--------SSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEE
T ss_pred EEECCCCccccCCceeE--------EEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccE
Confidence 9999841 33322 33 445677889999999 888877755 379999998 45210 000
Q ss_pred ceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCc
Q 010801 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (501)
.+.. +|...+..+.|+|||+++++++ ++ .|++||+.. ++.......+.... .....
T Consensus 235 ~l~~-------------~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~ 293 (662)
T 3azo_A 235 TLLG-------------GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFA-------GPLWT 293 (662)
T ss_dssp EEEE-------------ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSS-------CCCCS
T ss_pred EeCC-------------CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cceeeccccccccc-------Ccccc
Confidence 2221 2346789999999999766664 36 555566543 44332222222110 00011
Q ss_pred ceeeEEEEcCCCcEEEEEeCCCeEEEE--ecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 385 FDKFECSVSGDGLHFATGSYSNLLRIF--SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 385 ~~~~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
.++..++|+|+++++++++. +.++|| |+.++ . ...+..+...+..+. ++..+..+ +++++.+.. .+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~-s~~~~~~~-----~~~~~~~~~~~i~ 363 (662)
T 3azo_A 294 PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-E-LVDAAGPWTEWAATL-TVSGTRAV-----GVAASPRTAYEVV 363 (662)
T ss_dssp TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-E-EEECCSSCCEEEEEE-EEETTEEE-----EEEEETTEEEEEE
T ss_pred ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-c-EEEecCCCCeEEEEE-ecCCCEEE-----EEEcCCCCCCEEE
Confidence 11247899999999999999 999999 44444 2 466777766666551 33223223 455555544 677
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-16 Score=142.00 Aligned_cols=261 Identities=12% Similarity=0.154 Sum_probs=177.2
Q ss_pred chhhhhhhccCCCCCCccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCce
Q 010801 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (501)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (501)
..|.+.-.|+.+.. ...|-..+.+++++++|+++++...++.|.+||.....
T Consensus 11 ~~~~~~~~~g~~g~--~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~-------------------------- 62 (286)
T 1q7f_A 11 QRMIYHCKFGEFGV--MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF-------------------------- 62 (286)
T ss_dssp EEECEEEEECCBSS--STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--------------------------
T ss_pred ceeEEEEeccCCCC--CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--------------------------
Confidence 34445555665433 33566789999999999988888888999999976321
Q ss_pred eeEeeec------cCCcchhhccccccccceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccceeeeeccCCCcccccc
Q 010801 92 RYKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (501)
Q Consensus 92 ~~~~~~~------~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~~~~~~~~~~~~~~~~~ 164 (501)
...+. +|. ..+..+++. .+++.++++... ++.|++|+. +++......
T Consensus 63 --~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~---------- 116 (286)
T 1q7f_A 63 --KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG---------- 116 (286)
T ss_dssp --EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEEC----------
T ss_pred --EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEec----------
Confidence 11221 232 457888884 255666655533 789999994 444332210
Q ss_pred cccccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEE
Q 010801 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 243 (501)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~i 243 (501)
..+...+.+++++++|+++++. .++.|.+
T Consensus 117 --------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 117 --------------------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVII 146 (286)
T ss_dssp --------------------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred --------------------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 2334567889999999988887 7899999
Q ss_pred EECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCccee
Q 010801 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (501)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
||.. +. ....+. ...+...+.+++++|++ +++++...++.|++||.... .. ..+..
T Consensus 147 ~~~~-g~-~~~~~~-----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~----------- 202 (286)
T 1q7f_A 147 FDQN-GN-VLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YL----RQIGG----------- 202 (286)
T ss_dssp ECTT-SC-EEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EE----EEESC-----------
T ss_pred EcCC-CC-EEEEeC-----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EE----EEEcc-----------
Confidence 9976 33 333221 12344568999999998 88887778999999997542 11 22222
Q ss_pred eecccceeEEEEeeCCCEEEEEc-CC-cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 324 TEIIASISDIKFANDGQHLLSRD-YM-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~~~~l~~~~-~~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
.++...+..++++|+|+++++.. ++ .|++||.. ++.+..+..+..... ..+++++|+|+++++
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~-------------~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQ-------------CFDVALMDDGSVVLA 267 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSC-------------EEEEEEETTTEEEEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCCc-------------ceeEEECCCCcEEEE
Confidence 01124678999999999888775 44 99999963 677777765433210 158999999987777
Q ss_pred EeCCCeEEEEecCCC
Q 010801 402 GSYSNLLRIFSHGVG 416 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~ 416 (501)
+.|+.|++|++...
T Consensus 268 -~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 268 -SKDYRLYIYRYVQL 281 (286)
T ss_dssp -ETTTEEEEEECSCC
T ss_pred -CCCCeEEEEEcccc
Confidence 67999999998654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=164.12 Aligned_cols=284 Identities=9% Similarity=0.058 Sum_probs=170.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.....++|+ +++++++++ |++|++||+.+++...+......
T Consensus 17 ~~~~~~~w~--~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~----------------------------------- 57 (740)
T 4a5s_A 17 LKLYSLRWI--SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF----------------------------------- 57 (740)
T ss_dssp CCCCCEEEC--SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT-----------------------------------
T ss_pred ccccccEEC--CCCcEEEEc--CCcEEEEECCCCceEEEEechhh-----------------------------------
Confidence 346789998 788888876 99999999999886554321100
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC---------CeEEEEECCCCCeeeeeeecCCCCC
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
..+......++|||||+.|+.+ .+ +.+.+||+. +++... +
T Consensus 58 ---------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~~--------l 107 (740)
T 4a5s_A 58 ---------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLIT--------E 107 (740)
T ss_dssp ---------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECC--------S
T ss_pred ---------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEEE--------c
Confidence 1112223458899999999987 54 567799999 444433 5
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc---------ceeEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA---------SISDIK 334 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~ 334 (501)
..+...+..++|+||| +.|+.+. ++.|++||+.+++... -...+ .....+.++.. ....+.
T Consensus 108 ~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~---lt~~g-----~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 108 ERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYR---ITWTG-----KEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp SCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEE---CCSCC-----BTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred ccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEE---EcCCC-----CccceecCcccccccchhcCCCcceE
Confidence 5667789999999999 8888874 6899999998875321 01111 00111222322 234589
Q ss_pred EeeCCCEEEEEc-C-CcEEEEEe-----------------------------------eC---CCC-ceeEeeccccccc
Q 010801 335 FANDGQHLLSRD-Y-MNLKLWDI-----------------------------------RM---DST-PVATFKIHEHLRP 373 (501)
Q Consensus 335 ~sp~~~~l~~~~-~-~~i~lwd~-----------------------------------~~---~~~-~~~~~~~~~~~~~ 373 (501)
|||||++||..+ | ..+.+|++ .+ ... ....+.....
T Consensus 178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~--- 254 (740)
T 4a5s_A 178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS--- 254 (740)
T ss_dssp ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH---
T ss_pred ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc---
Confidence 999999999763 3 44555544 31 100 1111111000
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeC----CCeEEEEecCCCC----c---ceEEEecccCccc-----ceeecc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS----A---GGITVEAGKNENR-----KPILQA 437 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~----~---~~~~~~~~~~~v~-----~~~~~~ 437 (501)
+. .....+..++|+|||+.++.... +..|++||+.+++ + ....-..|...+. ...|+|
T Consensus 255 ----~~--~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 255 ----ML--IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ----HH--TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ----CC--CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 00 00112368999999997775543 3479999999886 1 1122256666655 678888
Q ss_pred CCccccCccceee-eec-ccce-eec--ccc-CCcccccccCCCeEEEEEccCCCEEEEeeC
Q 010801 438 APRARRSSLSNLT-RGL-YRQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 438 ~~~~~~~~~~~l~-~~~-~~~~-~iw--~~~-~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 493 (501)
+|+. ++ ..+ .++. .|| +.. +....+......+..+. .+|++.|+..+.
T Consensus 329 --DG~~-----l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 329 --DGNS-----FYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp --TSSE-----EEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred --CCCE-----EEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEe
Confidence 6665 55 444 4444 666 333 23333444455666654 355776665543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-16 Score=147.73 Aligned_cols=259 Identities=9% Similarity=-0.018 Sum_probs=153.1
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEecc-ccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+..++|+ |++++|++++.+ .|.+|++. +++.......
T Consensus 40 ~~~~~~a~s--pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------------------- 79 (365)
T 1jof_A 40 EPISWMTFD--HERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------------------- 79 (365)
T ss_dssp CCCSEEEEC--TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-------------------------------------
T ss_pred CCCcEEEEC--CCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-------------------------------------
Confidence 457889997 889999988887 99999987 6654322100
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE--EEEE--------------cCCeEEEEECCCCCeeeeee
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIV 256 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~--------------~d~~i~iwd~~~~~~~~~~~ 256 (501)
..+ ..+..++|+|+|+. ++++ .++.+.+|++...+.....+
T Consensus 80 ----------------------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~ 136 (365)
T 1jof_A 80 ----------------------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV 136 (365)
T ss_dssp ----------------------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred ----------------------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE
Confidence 011 12344788999984 3333 47899999997434333221
Q ss_pred ecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEcc-CCcccccccceeecccccCCCcceeeecccceeEEE
Q 010801 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (501)
Q Consensus 257 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 334 (501)
... ...+...+.+++|+|+| ++|+++.. ++.|++||+. +++... ...+.. ..|...+..++
T Consensus 137 ~~~---~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~ 199 (365)
T 1jof_A 137 QNY---EYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVA 199 (365)
T ss_dssp EEE---ECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEE
T ss_pred eeE---EeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeE
Confidence 110 01244578999999999 87777654 6899999998 554321 011110 01234688999
Q ss_pred EeeCCCEEEEEc--CCcEEEEEeeCC-CCce---eEeeccccccccccccCCCC---CcceeeEEE-EcCCCcEEEEEeC
Q 010801 335 FANDGQHLLSRD--YMNLKLWDIRMD-STPV---ATFKIHEHLRPKLCDLYNND---SIFDKFECS-VSGDGLHFATGSY 404 (501)
Q Consensus 335 ~sp~~~~l~~~~--~~~i~lwd~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~s~~~~~l~s~~~ 404 (501)
|+|||++|+++. ++.|.+|+++.. ++.. ..+......... +.. ....+..++ |+|||++|++++.
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD-----RDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC-----BCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCC-----cccccccccccccEEEECCCCCEEEEECC
Confidence 999999988764 389999988631 3332 122211100000 000 000126899 9999998877654
Q ss_pred C-C-----eEEEEecC-CCCcceE---EEecccCcccceeeccCC-ccccCccceeeeeccc-ce-eecccc
Q 010801 405 S-N-----LLRIFSHG-VGSAGGI---TVEAGKNENRKPILQAAP-RARRSSLSNLTRGLYR-QA-HENSSS 463 (501)
Q Consensus 405 d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~v~~~~~~~~~-~~~~~~~~~l~~~~~~-~~-~iw~~~ 463 (501)
+ + .|.+|++. +++ +.. ....+......++++|.. ++++ |++++.+ +. .+|+.+
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-----l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEW-----MAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTE-----EEEECSSSCEEEEEEEE
T ss_pred CCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCE-----EEEEEcCCCeEEEEEEc
Confidence 3 2 89999996 443 322 133344455666666610 2444 5555543 44 666443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=150.03 Aligned_cols=292 Identities=9% Similarity=-0.013 Sum_probs=169.0
Q ss_pred EEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEE
Q 010801 119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 198 (501)
Q Consensus 119 v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 198 (501)
++++ +++.++++++.++.|++||..+++......
T Consensus 5 ~~~~--~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-------------------------------------------- 38 (349)
T 1jmx_B 5 PALK--AGHEYMIVTNYPNNLHVVDVASDTVYKSCV-------------------------------------------- 38 (349)
T ss_dssp CCCC--TTCEEEEEEETTTEEEEEETTTTEEEEEEE--------------------------------------------
T ss_pred cccc--CCCEEEEEeCCCCeEEEEECCCCcEEEEEe--------------------------------------------
Confidence 3454 677889999999999999999887554331
Q ss_pred EeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe
Q 010801 199 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 276 (501)
Q Consensus 199 w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 276 (501)
.+....+..++|+|+++.++ ++ .++.|.+||+.+ ++....+..... -......+..++|+
T Consensus 39 ----------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~~~~-~~~~~~~~~~~~~s 100 (349)
T 1jmx_B 39 ----------------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLSSV-PGEVGRSMYSFAIS 100 (349)
T ss_dssp ----------------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESCCS-TTEEEECSSCEEEC
T ss_pred ----------------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEcccc-cccccccccceEEC
Confidence 11112466899999998665 45 789999999984 444433211100 00002346789999
Q ss_pred cCCCcEEEEEeCC------------CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 277 PIYCNLLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 277 p~~~~~l~~~~~d------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
|+| ++|++++.+ +.|.+||+.+++... ....+.. ...+.+++|+|+|+ +++
T Consensus 101 pdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 101 PDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPM--------------PRQVYLMRAADDGS-LYV 163 (349)
T ss_dssp TTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEEC--------------CSSCCCEEECTTSC-EEE
T ss_pred CCC-CEEEEEcccccccccccccCCCeEEEEECCCccccc-eeeeccC--------------CCcccceeECCCCc-EEE
Confidence 999 888888765 899999998764321 1122222 24688999999999 554
Q ss_pred EcCCcEEEEEeeCCCCceeEeeccccccccc--------cccCCCCC-cceeeEEEEcCCCcEEEEEe-CCCeEEEEecC
Q 010801 345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPKL--------CDLYNNDS-IFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (501)
Q Consensus 345 ~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 414 (501)
++ +.|++||+.+ ++.+..+..+....... ........ ......+++++++....... ....+..++..
T Consensus 164 ~~-~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AG-PDIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ES-SSEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred cc-CcEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 43 4599999975 66666655332100000 00000000 00113566766542211100 01112225555
Q ss_pred CCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC-cccccccCCCeEEEEEccCCCEEEEee
Q 010801 415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~-~~~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
+++.....+..+...+..++++|. ++++ ++.+ ++. .+|+.... ..........+.+++|+|++++|++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~-dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPK-DPNQ-----IYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSS-CTTE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES
T ss_pred CCcEEecccccCCCcceeeEecCC-CCCE-----EEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec
Confidence 554333334445556677777772 3444 5555 556 88855432 212223345677999999999888766
Q ss_pred -CCeEEEEeC
Q 010801 493 -GNSLFFHYA 501 (501)
Q Consensus 493 -~~~~~i~~~ 501 (501)
++.+++|++
T Consensus 314 ~~~~v~v~d~ 323 (349)
T 1jmx_B 314 TFNDLAVFNP 323 (349)
T ss_dssp BSSEEEEEET
T ss_pred CCCeEEEEec
Confidence 556999873
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-16 Score=149.88 Aligned_cols=298 Identities=11% Similarity=0.026 Sum_probs=175.2
Q ss_pred cccceEEEEEccCCCEEEEEecC---CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
|...+..++|||||++||.+... ..|.+||+.+++. ..+..+..
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~----------------------------~~l~~~~~----- 80 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA----------------------------VQLTEGKG----- 80 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE----------------------------EECCCSSC-----
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE----------------------------EEeecCCC-----
Confidence 34447889999999998877543 3688888877643 22222220
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCcc-------------
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM------------- 174 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 174 (501)
.....+.|+ |+|++|+.++.++.|++|++.+++...+....... ......+.
T Consensus 81 ------~~~~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-------~~~g~~l~~~~~~~~~~~~~~ 145 (396)
T 3c5m_A 81 ------DNTFGGFIS--TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW-------KGYGTWVANSDCTKLVGIEIL 145 (396)
T ss_dssp ------BCTTTCEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE-------EEEEEEEECTTSSEEEEEEEE
T ss_pred ------CccccceEC--CCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc-------CCCCCEEEeccCCcccccccc
Confidence 223347887 89999999999999999999988766554322110 00000000
Q ss_pred ccCCCCCCccccccee---ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE-cC------CeEEE
Q 010801 175 NEHNPPSFAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINL 243 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~---~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~-~d------~~i~i 243 (501)
...+.++...++.... .....+.+|++.... .... ..+...+..+.|+| +++.|+.. .+ ..|.+
T Consensus 146 ~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 146 KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE---LEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC---EEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred ccccCCCCcceeeeeeccCCCcceEEEEECCCCc---EEee--ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 0233444444433221 234578888887532 2222 24556788999999 78877664 32 46888
Q ss_pred EECCCCCeeeeeeecCCCCCCCc-ccceEEEEEecCCCcEEEEEeCC-----CeEEEEEccCCcccccccceeecccccC
Q 010801 244 WNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESH 317 (501)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~ 317 (501)
||+. ++....+ .... ...+..++|+|+| +.|+.++.+ +.|.+||+.+++.. .+...
T Consensus 221 ~d~~-~~~~~~l-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~----- 282 (396)
T 3c5m_A 221 VNED-GSNVRKI-------KEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE----EVMVM----- 282 (396)
T ss_dssp EETT-SCCCEES-------SCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE----EEEEC-----
T ss_pred EECC-CCceeEe-------eccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE----EeeeC-----
Confidence 8887 3332221 1111 2357889999999 766666543 45999999876532 11111
Q ss_pred CCcceeeecccceeEEEEee-CCCEEEEEc-----------------CCcEEEEEeeCCCCceeEeeccccccccccccC
Q 010801 318 GSKSFFTEIIASISDIKFAN-DGQHLLSRD-----------------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 318 ~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-----------------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
.... +.|+| ||++++++. +..|++||+.+ ++. ..+..+...... .
T Consensus 283 ----------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~ 345 (396)
T 3c5m_A 283 ----------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----L 345 (396)
T ss_dssp ----------CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----B
T ss_pred ----------CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCcccc----c
Confidence 1123 88999 999888642 26899999874 443 344443321000 0
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEE--ecCCC
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSY-SNLLRIF--SHGVG 416 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iw--d~~~~ 416 (501)
..+.......++|+|||+.|+..+. ++...|| ++.++
T Consensus 346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred cccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 0000000146899999998887765 5555555 44444
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-15 Score=139.76 Aligned_cols=244 Identities=13% Similarity=0.099 Sum_probs=162.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..|.+++|++++..++..+.++.++.|.-. ....+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~----------- 44 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKG----------- 44 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSC-----------
T ss_pred cccceeeecCCccceeEEeecccCcccccc------------------------------eeEEEeccC-----------
Confidence 457888999998888777778889998321 223445555
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+.+++|+ +++++++++..++.|.+||..+++.....
T Consensus 45 -~~~~~~~~~--~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------- 82 (333)
T 2dg1_A 45 -LQLEGLNFD--RQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------------------------- 82 (333)
T ss_dssp -CCEEEEEEC--TTSCEEEEETTTCEEEEECTTTCCEEEEE---------------------------------------
T ss_pred -ccccCcEEC--CCCCEEEEECCCCEEEEEeCCCCcEEEEe---------------------------------------
Confidence 567899997 78887778888899999999877644321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC----CeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..+...+.+++++++|++++++ .+ +.|.+||.+. +.....+. ...+.
T Consensus 83 ----------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~~-----~~~~~ 134 (333)
T 2dg1_A 83 ----------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIE-----DLSTA 134 (333)
T ss_dssp ----------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEEC-----SSSSC
T ss_pred ----------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEEc-----cCccC
Confidence 1334578999999999988887 55 6899999883 33322210 11234
Q ss_pred cceEEEEEecCCCcEEEEEeC------CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 268 EVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
..+.+++++|+| +++++... .+.|..+|..+++.. ..... ...+..++|+|+|++
T Consensus 135 ~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--------------~~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 135 YCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKV 195 (333)
T ss_dssp CCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSE
T ss_pred CcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE----EeecC--------------CCcccceEECCCCCE
Confidence 578999999998 87776653 355666665543321 11111 235788999999986
Q ss_pred EEEE-c-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 342 LLSR-D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 342 l~~~-~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|+.+ . ++.|++||+...+..+..+...... .+... .....++++++|+++++...++.|.+||.+
T Consensus 196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~~~---~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 196 LWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFTGH---EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECCSS---SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecCCC---CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 6544 3 4899999996434433322100000 00000 011579999999988888888999999984
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-15 Score=139.65 Aligned_cols=259 Identities=11% Similarity=0.069 Sum_probs=170.4
Q ss_pred cceEEEEEccCCCEEEEEecC------------------------CcEEEEEecCCcCCCCccchhhhhhhccccccCCC
Q 010801 33 DIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (501)
+.+.+|+++|+|+++++...+ ++|.+||..+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------- 81 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------- 81 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence 569999999999999888766 3688888776643
Q ss_pred CceeeEeeec-cCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccc-eeeeeccCCCcccccccc
Q 010801 89 PEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENT 166 (501)
Q Consensus 89 ~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (501)
...+. ++. .....|++. ++|+++++...++.|++|+..... ...........
T Consensus 82 -----~~~~~~~~~------------~~p~gia~d--~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------- 135 (329)
T 3fvz_A 82 -----LQSSGKNLF------------YLPHGLSID--TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------- 135 (329)
T ss_dssp -----EEEECTTTC------------SSEEEEEEC--TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-------
T ss_pred -----EeccCCCcc------------CCceEEEEC--CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-------
Confidence 12222 233 567889997 788888888888999999986542 11111000000
Q ss_pred cccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecC-CCCEEEEE--cCCeEEE
Q 010801 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINL 243 (501)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~--~d~~i~i 243 (501)
+ ...++......++++| ++.++++. .++.|++
T Consensus 136 ---------------------g------------------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 136 ---------------------G------------------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp ---------------------C------------------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred ---------------------C------------------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 0 0023445678999999 78887776 4899999
Q ss_pred EECCCCCeeeeeeecCCCC---CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc
Q 010801 244 WNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (501)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (501)
|+.+ +..+..+...... ..++-.....++++|++.+++++...++.|++||..+++.. ..+..
T Consensus 171 ~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~----~~~~~-------- 236 (329)
T 3fvz_A 171 FSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV----REIKH-------- 236 (329)
T ss_dssp ECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EEECC--------
T ss_pred EcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----EEEec--------
Confidence 9955 3344332111000 01233457999999993288888888999999999866543 33322
Q ss_pred ceeeecccceeEEEEeeCCCEEEE-------Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 321 SFFTEIIASISDIKFANDGQHLLS-------RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 321 ~~~~~h~~~i~~~~~sp~~~~l~~-------~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
..+...+..++++| +..+++ .. ...|++||..+ ++.+..+....... .....+++
T Consensus 237 ---~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~------------~~p~~ia~ 299 (329)
T 3fvz_A 237 ---ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHF------------DMPHDIVA 299 (329)
T ss_dssp ---TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSCC------------SSEEEEEE
T ss_pred ---cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCcc------------CCeeEEEE
Confidence 11235677888888 433332 22 25899999875 77777764211100 01168999
Q ss_pred cCCCcEEEEEeCCCeEEEEecCC
Q 010801 393 SGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 393 s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+|+|.++++...++.|++|+++.
T Consensus 300 ~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEeCCc
Confidence 99999899999999999999864
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-15 Score=137.44 Aligned_cols=305 Identities=10% Similarity=-0.001 Sum_probs=186.9
Q ss_pred CCCEEEEEe------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 43 TGDYLAVGD------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 43 ~g~~latg~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
+++++++.. .|+.|.+||..+++. ...+..+. .+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~---------------------------~~~i~~g~------------~p- 53 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF---------------------------LGMVPTAF------------NG- 53 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCE---------------------------EEEEECCE------------EE-
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeE---------------------------EEEecCCC------------CC-
Confidence 556666543 467999999887653 23444443 44
Q ss_pred eEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
.++|+ |++++++++. .+++|.+||..+.+...........
T Consensus 54 -~i~~s--pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--------------------------- 103 (361)
T 2oiz_A 54 -HVQVS--NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--------------------------- 103 (361)
T ss_dssp -EEEEC--TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------------------------
T ss_pred -ceEEC--CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------------------------
Confidence 78997 8999999886 3678999999877655433111000
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeee-eecCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSN 262 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~ 262 (501)
..+......++++|+|++|+++ . ++.|.+||+.+ .+.+.. +.
T Consensus 104 ----------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~-~~~~~~~i~----- 149 (361)
T 2oiz_A 104 ----------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK-GDYVEDVTA----- 149 (361)
T ss_dssp ----------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT-TEEEEEEGG-----
T ss_pred ----------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC-CcEEEEEec-----
Confidence 1123445678999999999887 3 68999999994 444443 21
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC-Ccccccc--cceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHS--ARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.. ....+.+.|++...+++.+.||.+.+|++.. ++..... ...+.. ...+ ..+.++|++
T Consensus 150 ---~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~g 211 (361)
T 2oiz_A 150 ---AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV-------------KDDP-IFIAPALDK 211 (361)
T ss_dssp ---GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT-------------TTSC-BCSCCEECS
T ss_pred ---CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC-------------CCCc-eEEEecccC
Confidence 11 1233567787656788889999999999865 3221000 001111 1111 233346777
Q ss_pred CEEEEEc-CCcEEEEEeeCCCC-ceeEeecccc-ccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-----------C
Q 010801 340 QHLLSRD-YMNLKLWDIRMDST-PVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-----------S 405 (501)
Q Consensus 340 ~~l~~~~-~~~i~lwd~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-----------d 405 (501)
..++..+ ++.|+++|+..... ....+..... ..... . .......++|+|+++.++.+.. .
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN--W----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT--C----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred CEEEEEeCCCeEEEEEecCCCceecccccccCccccccc--c----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 7666554 48899999864221 1122211100 00000 0 0000023899999887776543 3
Q ss_pred CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC----cccccccCCCeEEEE
Q 010801 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----HELSYNLSSKLLHLA 480 (501)
Q Consensus 406 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~----~~~~~~~~~~i~~~~ 480 (501)
+.|.+||+.+++ ...++..+. ...++++| ++++ |++++. +. .+|+.... +............++
T Consensus 286 ~~v~viD~~t~~-~v~~i~~~~--p~~ia~sp--dg~~-----l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 286 AEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQ--QRNL-----MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp SEEEEEETTTTE-EEEEEECTT--CCEEEEET--TTTE-----EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred ceEEEEECCCCc-EEEEEecCC--eeEEEECC--CCCE-----EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 589999999884 457777777 89999999 6766 666665 66 99954432 223335666778999
Q ss_pred EccCCC
Q 010801 481 WHPTTN 486 (501)
Q Consensus 481 ~sp~~~ 486 (501)
++|+|.
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999986
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-16 Score=148.24 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=97.9
Q ss_pred CcccceEEEEecC-CCCEEEEE-c------CCeEEEEECCCCCeeeeeeecCCCCCCCcc--cceEEEEEecCCCcEEEE
Q 010801 216 AHDFNINSISNNS-DCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAY 285 (501)
Q Consensus 216 ~~~~~v~~l~~~~-~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~ 285 (501)
.+...+..++|+| +|+.|+.. . ...|.++|.. ++.... +..+. ..+..++|+|+| +.|+.
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~ 254 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED-GTNMRK--------VKTHAEGESCTHEFWVPDG-SALVY 254 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT-SCCCEE--------SCCCCTTEEEEEEEECTTS-SCEEE
T ss_pred cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC-CCceEE--------eeeCCCCcccccceECCCC-CEEEE
Confidence 3455688999999 99988875 4 2378888876 333222 22233 357789999999 76654
Q ss_pred EeC-CC----eEEEEEccCCcccccccceeecccccCCCcceeeecc-cceeEEEEeeCCCEEEEE----------cCCc
Q 010801 286 SSS-RG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSR----------DYMN 349 (501)
Q Consensus 286 ~~~-dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~~~----------~~~~ 349 (501)
.+. ++ .|.+||+.+++.. .+... .. ..|. .....+.|+|||+.|+.. .+..
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~----~l~~~-~~--------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENR----QLTSM-PA--------CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEE----EEEEE-CC--------EEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred EecCCCCCcceEEEEecCCCceE----EEEcC-CC--------ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 433 22 3999999887532 11111 00 0000 012234799999988742 2368
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 414 (501)
|++||+.+ + .+..+..+...... ++. +....+..++|+|||+.|+..+ .+|...||.++
T Consensus 322 i~~~d~~~-~-~~~~l~~~~~~~~~---~~~-~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 322 LYVFNMKN-G-TQHRVARHDTSWKV---FEG-DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEETTT-T-EEEEEEECCCCCCC---BTT-BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEeccC-C-ceEEeccccCcccc---ccc-ccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 99999874 4 34455544431000 000 0000015789999999888666 46777777654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-15 Score=153.30 Aligned_cols=210 Identities=13% Similarity=0.009 Sum_probs=132.1
Q ss_pred cCCCCE-EEEE--cCCeEEEEECC--CCCeeeeeeecCCCCCCC-----cccceEEEEEecCCCcEEEEEeCC-------
Q 010801 227 NSDCET-FVSA--DDLRINLWNLE--ISDQCFNIVDMKPSNMDD-----LTEVITSAEFHPIYCNLLAYSSSR------- 289 (501)
Q Consensus 227 ~~~~~~-l~~~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~-----~~~~v~~v~~~p~~~~~l~~~~~d------- 289 (501)
||||+. |+.+ .+..|.++++. ..+.... +.. |...+..++|+||| +.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--------l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--------LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--------CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTT
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--------ccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCC
Confidence 499998 7766 35666666654 1022222 222 56778999999999 888888876
Q ss_pred ---CeEEEEEccC------Ccccccccceee-cccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C--------CcE
Q 010801 290 ---GFVRLVDMRQ------SALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNL 350 (501)
Q Consensus 290 ---g~i~~wd~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~--------~~i 350 (501)
..|.+||+.+ ++. +.+. . +...+..++|+|||++|+..+ + ..|
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~-----~~l~~~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV-----RELSDD-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS-----EESSCS-------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CceeEEEEEECCCCccccCCce-----eEEEec-------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 5899999987 432 1121 1 234678899999999998653 3 379
Q ss_pred EEEEeeCCC---CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC--eEEEEecCCCCcceEEEec
Q 010801 351 KLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 351 ~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~ 425 (501)
++||+...+ +......++...+ ..++|+|||+++++++.++ .|++||+.+++. ..+..
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~---------------~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~~l~~ 282 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAI---------------AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--TQLCR 282 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCE---------------EEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--EESSC
T ss_pred EEEEECCCCcccccEEeCCCCCceE---------------cceEECCCCeEEEEECCCCCeEEEEEECCCCce--eeccc
Confidence 999997214 3333333333332 6899999999888888888 566666655532 23322
Q ss_pred ccCc---------ccceeeccCCccccCccceeeeecccce-eec--ccc-CCcccccccCCCeEEEEEccCCCEEE
Q 010801 426 GKNE---------NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTNLIA 489 (501)
Q Consensus 426 ~~~~---------v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~~-~~~~~~~~~~~~i~~~~~sp~~~~la 489 (501)
+... +..+++++ ++++ ++++.. +. .+| +.. +....+..+...+..+ |+++++.++
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~--~~~~-----~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~ 350 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLA--NGLI-----AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAV 350 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECT--TSCE-----EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEE
T ss_pred ccccccCccccccCceEeEeC--CCEE-----EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEE
Confidence 3222 34556665 5666 777777 77 999 332 2334444555666655 255555444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-15 Score=137.06 Aligned_cols=275 Identities=9% Similarity=0.021 Sum_probs=169.4
Q ss_pred EEEEccCCCEEEEEec----------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 37 AIEFDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 37 ~v~~s~~g~~latg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.++|+|||++|++++. ++.|.+||..+++. ...+......
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---------------------------~~~i~~~~~~--- 103 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---------------------------EKEISLPPKR--- 103 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---------------------------EEEEEECTTB---
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---------------------------EEEEEcCccc---
Confidence 8999999999998863 67899999876643 1222211000
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeee-eccCCCcccccccccccccCccccCCCCCCc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
.........++++ |+|++|+++.. +++|.+||+.+++.... ...
T Consensus 104 ---~~~g~~p~~i~~s--pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---------------------------- 150 (361)
T 2oiz_A 104 ---VQGLNYDGLFRQT--TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---------------------------- 150 (361)
T ss_dssp ---CCBCCCGGGEEEC--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG----------------------------
T ss_pred ---cccCCCcceEEEC--CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC----------------------------
Confidence 0000346778997 89999998863 68999999998875443 211
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (501)
.....+.+.|++ ..+++. .||.+.+|+....++....... ..
T Consensus 151 -----------------------------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-~~ 194 (361)
T 2oiz_A 151 -----------------------------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-KQ 194 (361)
T ss_dssp -----------------------------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-CC
T ss_pred -----------------------------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-cc
Confidence 011224455654 445555 7888888887643443311110 00
Q ss_pred CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 262 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
.+.....+ ..+.+.|++ ..++..+.++.|.++|+....... ...+........... + .......++|+|+++.
T Consensus 195 ~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~~~-~--~p~g~~~~a~~~dg~~ 267 (361)
T 2oiz_A 195 MFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDEDKAKN-W--VPGGYNLVGLHRASGR 267 (361)
T ss_dssp CSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHHHHHTT-C--EECCSSCEEEETTTTE
T ss_pred eEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCccccccc-c--ccCCeeEEEEecCCCe
Confidence 12222222 233446777 677777889999999987653211 011110000000000 0 0012234789999887
Q ss_pred EEEE-c-----------CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEE
Q 010801 342 LLSR-D-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409 (501)
Q Consensus 342 l~~~-~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 409 (501)
+.++ . .+.|.+||+.+ .+.+.++..+. . .+++|+|||++|++++. +.|.
T Consensus 268 lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~l~v~n~-~~v~ 328 (361)
T 2oiz_A 268 MYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNLMLTLDG-GNVN 328 (361)
T ss_dssp EEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTEEEEECS-SCEE
T ss_pred EEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCEEEEeCC-CeEE
Confidence 7654 2 14799999987 88888888776 3 68999999999998887 9999
Q ss_pred EEecCCC--CcceEEEecccCcccceeecc
Q 010801 410 IFSHGVG--SAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 410 iwd~~~~--~~~~~~~~~~~~~v~~~~~~~ 437 (501)
+||..++ +.+ .++.........+++.|
T Consensus 329 v~D~~t~~l~~~-~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 329 VYDISQPEPKLL-RTIEGAAEASLQVQFHP 357 (361)
T ss_dssp EEECSSSSCEEE-EEETTSCSSEEEEEECC
T ss_pred EEECCCCcceee-EEeccCCCCcEEEEecC
Confidence 9999987 443 55555566667777777
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-14 Score=126.17 Aligned_cols=243 Identities=9% Similarity=0.104 Sum_probs=161.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..+.++++. +++.++++...++.|.+||... +..........
T Consensus 30 ~~p~~v~~~--~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~----------------------------------- 71 (286)
T 1q7f_A 30 TEPSGVAVN--AQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGK----------------------------------- 71 (286)
T ss_dssp SCEEEEEEC--TTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSS-----------------------------------
T ss_pred CCCceEEEC--CCCCEEEEECCCCEEEEECCCC-cEEEEecccCC-----------------------------------
Confidence 568889996 7888888878899999999873 33222110000
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEe-cCCCCEEEEE-c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..++...+..+++ .+++.++++. . ++.|.+||.. +..+..+ ...+...+
T Consensus 72 --------------------~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~------~~~~~~~~ 123 (286)
T 1q7f_A 72 --------------------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKF------GATILQHP 123 (286)
T ss_dssp --------------------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEE------CTTTCSCE
T ss_pred --------------------CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEe------cCccCCCc
Confidence 0244566889999 5778777776 4 8999999954 3333332 12234567
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
.+++++|+| +++++...++.|.+||.... .. ..+.. .++...+..++++|+|+++++.. ++.
T Consensus 124 ~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 124 RGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp EEEEECTTS-CEEEEETTTTEEEEECTTSC-EE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred eEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECCCCE
Confidence 999999998 88888778899999996532 21 22221 01224578999999999777765 489
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC-eEEEEecCCCCcceEEEecccC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~ 428 (501)
|++||.. ++.+..+..+.... ....++++++|+++++...++ .|.+|+.. ++.+ ..+..+..
T Consensus 187 i~~~~~~--g~~~~~~~~~g~~~-------------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~-~~~~~~~~ 249 (286)
T 1q7f_A 187 VKVFNYE--GQYLRQIGGEGITN-------------YPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI-SALESKVK 249 (286)
T ss_dssp EEEEETT--CCEEEEESCTTTSC-------------SEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE-EEEEESSC
T ss_pred EEEEcCC--CCEEEEEccCCccC-------------CCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE-EEEcccCC
Confidence 9999974 56666664332110 116899999999998888886 99999954 3222 22221110
Q ss_pred cccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
...+.+++++|+|+++++..++.+++|.
T Consensus 250 --------------------------------------------~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 250 --------------------------------------------HAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp --------------------------------------------CSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred --------------------------------------------CCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 0135678888988877775566788885
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-13 Score=131.16 Aligned_cols=318 Identities=9% Similarity=-0.004 Sum_probs=200.6
Q ss_pred ccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEE
Q 010801 41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120 (501)
Q Consensus 41 s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 120 (501)
+|.+.++++...+++|.++|..+++.. ..+... ..+..+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~---------------------------~~i~~g-------------~~p~~v~ 203 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIK---------------------------TVLDTG-------------YAVHISR 203 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEE---------------------------EEEECS-------------SCEEEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEE---------------------------EEEeCC-------------CCccceE
Confidence 355566677778899999999877542 333322 3467889
Q ss_pred EeecCCCCEEEEeeCCCeEEEEecc--ccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEE
Q 010801 121 WCAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 198 (501)
Q Consensus 121 ~~~~~~~~~l~s~s~d~~i~lw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 198 (501)
|+ |+++++++++.|+.|.+||+. +++.....
T Consensus 204 ~S--pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i--------------------------------------------- 236 (567)
T 1qks_A 204 LS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI--------------------------------------------- 236 (567)
T ss_dssp EC--TTSCEEEEEETTSEEEEEETTSSSCCEEEEE---------------------------------------------
T ss_pred EC--CCCCEEEEEcCCCeEEEEECCCCCCcEeEEE---------------------------------------------
Confidence 97 899999999999999999995 54433221
Q ss_pred EeccCceeeeeeEeecCCcccceEEEEec----CCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCC---Ccc-c
Q 010801 199 ANVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLT-E 268 (501)
Q Consensus 199 w~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~-~ 268 (501)
.. ......++|+ |||++++++ .+++|.++|.. ..+.++.+........ .|. .
T Consensus 237 ----------------~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 237 ----------------KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp ----------------EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCC
T ss_pred ----------------ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCC
Confidence 11 2235689999 699998886 78999999988 4555555433211111 122 2
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-- 346 (501)
.+..+..+++++.+++....+|.|.++|....+... ...+.. ......+.|+|+|++++++.
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~ 362 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANA 362 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGG
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCC
Confidence 678888899875666666778999999987653210 011111 23466889999999987664
Q ss_pred CCcEEEEEeeCCCCceeEeec-cccccccccccCCCCCcceeeEEE-EcCCCcE-EEEEe-CCCeEEEEecCCCC-----
Q 010801 347 YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGLH-FATGS-YSNLLRIFSHGVGS----- 417 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~-l~s~~-~dg~i~iwd~~~~~----- 417 (501)
++.|.++|+.+ ++.+..+.. ...+-+. .... ++|++.. ++++. .++.|.++|..+.+
T Consensus 363 sn~V~ViD~~t-~kl~~~i~vgg~~Phpg-------------~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 363 RNKLVVIDTKE-GKLVAIEDTGGQTPHPG-------------RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp GTEEEEEETTT-TEEEEEEECSSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred CCeEEEEECCC-CcEEEEEeccCcCCCCc-------------cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence 39999999986 776666654 2211100 1233 5787544 44443 46899999998732
Q ss_pred -cceEEEecccCcccceeeccCCccccCccceeeeecc-------cce-eeccccCC-----cc--ccc---------cc
Q 010801 418 -AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY-------RQA-HENSSSGH-----HE--LSY---------NL 472 (501)
Q Consensus 418 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-------~~~-~iw~~~~~-----~~--~~~---------~~ 472 (501)
....++.........+..+| +++. +..... ... .+++.... .. ... +.
T Consensus 429 ~kvv~~i~~~g~g~~~i~~~p--~~~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 501 (567)
T 1qks_A 429 WKILDSFPALGGGSLFIKTHP--NSQY-----LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG 501 (567)
T ss_dssp TSEEEEEECSCSCCCCEECCT--TCSE-----EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred CEEEEEEecCCCCCEEEEeCC--CCCe-----EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence 23456665443333455566 5544 322221 123 66643322 10 111 12
Q ss_pred CCCeEEEEEccCCCEEEEee------CCeEEEEe
Q 010801 473 SSKLLHLAWHPTTNLIACAN------GNSLFFHY 500 (501)
Q Consensus 473 ~~~i~~~~~sp~~~~la~~~------~~~~~i~~ 500 (501)
...+.++.|+|+|+.|-++. ++.|.|++
T Consensus 502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 45789999999999876652 46687775
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=131.87 Aligned_cols=240 Identities=8% Similarity=-0.016 Sum_probs=164.9
Q ss_pred cccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+.....+++|+|+|+ +++++..++.|.+|+..++ . ..+..+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~-------- 68 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS-------- 68 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence 456788999999998 7778888999999998765 2 3344444
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..+.+++++ ++|.++++...++.|.+||..+++........
T Consensus 69 ----~~~~~l~~~--~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~--------------------------------- 109 (296)
T 3e5z_A 69 ----HHQNGHCLN--KQGHLIACSHGLRRLERQREPGGEWESIADSF--------------------------------- 109 (296)
T ss_dssp ----SSEEEEEEC--TTCCEEEEETTTTEEEEECSTTCCEEEEECEE---------------------------------
T ss_pred ----CCcceeeEC--CCCcEEEEecCCCeEEEEcCCCCcEEEEeecc---------------------------------
Confidence 668999997 78888777767789999999877654332100
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE----E-c-------------CCeEEEEECCCCCe
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQ 251 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~~ 251 (501)
.......+..++++|+|+++++ | . .+.|..++.. +.
T Consensus 110 ------------------------~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~ 163 (296)
T 3e5z_A 110 ------------------------EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT 163 (296)
T ss_dssp ------------------------TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC
T ss_pred ------------------------CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC
Confidence 0111234667999999998887 3 1 2355555544 33
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc-CCcc-cccccceeecccccCCCcceeeecccc
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSAL-CDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
... +..+......++|+|++ +.|++.+.++.|.+||+. ++.. .. .+.+.. +...
T Consensus 164 ~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~-------------~~~~ 219 (296)
T 3e5z_A 164 LSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTV-------------EPGK 219 (296)
T ss_dssp EEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECC-------------SSSC
T ss_pred EEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeC-------------CCCC
Confidence 222 22344566899999999 877777778999999997 3332 10 122211 2345
Q ss_pred eeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE-cCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i 408 (501)
+..++++++|++.++. ++.|.+||.. ++.+..+..+.. + ++++| +|+++.|++++.++ +
T Consensus 220 p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~~-l 279 (296)
T 3e5z_A 220 TDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVSTE-F 279 (296)
T ss_dssp CCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETTE-E
T ss_pred CCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCCe-E
Confidence 6789999999977777 7899999975 677777766554 3 68899 68999888888764 4
Q ss_pred EEEecCCC
Q 010801 409 RIFSHGVG 416 (501)
Q Consensus 409 ~iwd~~~~ 416 (501)
.-++.++.
T Consensus 280 ~~~~~~~~ 287 (296)
T 3e5z_A 280 WSIETNVR 287 (296)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 44455544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=144.48 Aligned_cols=263 Identities=12% Similarity=0.033 Sum_probs=155.9
Q ss_pred eeEEEEeecCCCCEEEEeeCC---CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 116 INRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d---~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+..++|+ |+|++|+.+..+ ..|.+|++.+++...+.
T Consensus 38 ~~~~~~S--pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~--------------------------------------- 76 (396)
T 3c5m_A 38 FYQKCFT--QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT--------------------------------------- 76 (396)
T ss_dssp TTSCCBC--TTSCEEEEEECTTSSCEEEEEETTTTEEEECC---------------------------------------
T ss_pred eecCcCC--CCCCEEEEEEecCCCceEEEEECCCCcEEEee---------------------------------------
Confidence 6778897 899998877543 46888888877644321
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
..+......+.|+|||+.|+.+ .++.|++||+.. ++...+.. .+.....
T Consensus 77 ----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~~-------~~~~~~~ 126 (396)
T 3c5m_A 77 ----------------------EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQVIYT-------VDEEWKG 126 (396)
T ss_dssp ----------------------CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEE-------CCTTEEE
T ss_pred ----------------------cCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEEe-------cccccCC
Confidence 1222222236799999999887 788999999984 44333321 1111111
Q ss_pred E-------------------EEEecCCCcEEEEE-----eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 272 S-------------------AEFHPIYCNLLAYS-----SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 272 ~-------------------v~~~p~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
. +.|+|++ +.++.. ..+..|.+||+.+++.. .+.. +.
T Consensus 127 ~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~--------------~~ 187 (396)
T 3c5m_A 127 YGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGELE----VIHQ--------------DT 187 (396)
T ss_dssp EEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCEE----EEEE--------------ES
T ss_pred CCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCcEE----eecc--------------CC
Confidence 1 3456776 555443 35668999998876532 2222 24
Q ss_pred cceeEEEEee-CCCEEEEEcC-------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 328 ASISDIKFAN-DGQHLLSRDY-------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 328 ~~i~~~~~sp-~~~~l~~~~~-------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
..+..+.|+| +++.|+..++ ..|.+||+.. ++ ...+..+... ..+..++|+|||++|
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l 252 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAM 252 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEE
Confidence 5688999999 8887765432 3577888753 33 2333222111 011578999999988
Q ss_pred EEEeCC-----CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecc----------------cce-
Q 010801 400 ATGSYS-----NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY----------------RQA- 457 (501)
Q Consensus 400 ~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~- 457 (501)
+.++.+ +.|++||+.+++... +..... .. ..++|. ++++ ++.++. +..
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~-~~-~~~s~~-dg~~-----l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 253 AYVSYFKGQTDRVIYKANPETLENEE--VMVMPP-CS-HLMSNF-DGSL-----MVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp EEEEEETTTCCEEEEEECTTTCCEEE--EEECCS-EE-EEEECS-SSSE-----EEEEECCC----------CCCCCCEE
T ss_pred EEEecCCCCccceEEEEECCCCCeEE--eeeCCC-CC-CCccCC-CCce-----EEEecCCcceeeccccccccCCCCcE
Confidence 777554 459999998874332 221111 22 667662 4555 555331 123
Q ss_pred eeccccC-CcccccccCC-----------CeEEEEEccCCCEEEEeeC
Q 010801 458 HENSSSG-HHELSYNLSS-----------KLLHLAWHPTTNLIACANG 493 (501)
Q Consensus 458 ~iw~~~~-~~~~~~~~~~-----------~i~~~~~sp~~~~la~~~~ 493 (501)
.+|+... ....+..+.. .+..++|+|||+.|+.++.
T Consensus 323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 323 YVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp EEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred EEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 5554332 2222333332 2566899999999987773
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-14 Score=129.74 Aligned_cols=257 Identities=12% Similarity=0.067 Sum_probs=160.9
Q ss_pred ccccceEEEEEccCCCEEEEEe---------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (501)
.....+..+++ ||++||... .++.|.+|++.+++. ..+
T Consensus 12 ~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------~~l--- 58 (347)
T 2gop_A 12 AKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----------------------------RFI--- 58 (347)
T ss_dssp CCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----------------------------EEE---
T ss_pred eeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce----------------------------EEc---
Confidence 34566888888 899988753 256789999887643 112
Q ss_pred CcchhhccccccccceeEEEEeecCCCCEEEEeeCC---C--eEEEEeccccceeeeeccCCCcccccccccccccCccc
Q 010801 101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (501)
Q Consensus 101 ~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d---~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (501)
..+..++|+ |+|++|+.++.+ + .|.+|++.+++...+.
T Consensus 59 -------------~~~~~~~~S--pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---------------------- 101 (347)
T 2gop_A 59 -------------ENATMPRIS--PDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---------------------- 101 (347)
T ss_dssp -------------ESCEEEEEC--TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE----------------------
T ss_pred -------------ccCCCeEEC--CCCCEEEEEEeccCCCcceEEEEECCCCceEEEE----------------------
Confidence 226788998 899999987643 3 3677777766543321
Q ss_pred cCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC----------------
Q 010801 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------- 238 (501)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------------- 238 (501)
.+.. +..++|+|||+.|+.+ .+
T Consensus 102 ----------------------------------------~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 102 ----------------------------------------EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp ----------------------------------------EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred ----------------------------------------cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence 1122 8889999999988876 32
Q ss_pred -----------CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC-------eEEEEEccCC
Q 010801 239 -----------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQS 300 (501)
Q Consensus 239 -----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-------~i~~wd~~~~ 300 (501)
..|.+||+. .++.... +.. . .+..++|+|+| +++++..++ ...+|.+.++
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~-~~~~~~~-------l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTE-SEEVIEE-------FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp ---------CEEEEEEEETT-TTEEEEE-------EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred ecCcccccCccceEEEEECC-CCeEEee-------ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC
Confidence 578899998 4444222 112 2 67889999997 566555442 3455544433
Q ss_pred cccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C--------CcEEEEEeeCCCCceeEeeccccc
Q 010801 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~--------~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
+. +.+.. + ..+..+ +|||++|+..+ + ..|++|| + ++.......+...
T Consensus 209 ~~-----~~l~~-------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~ 264 (347)
T 2gop_A 209 KE-----EKMFE-------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG 264 (347)
T ss_dssp EE-----EEEEE-------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE
T ss_pred ce-----EEecc-------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc
Confidence 21 22222 1 233333 99999887653 2 3577777 3 4443333333332
Q ss_pred cccccccCCCCCcceeeE-EEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceee
Q 010801 372 RPKLCDLYNNDSIFDKFE-CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT 450 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 450 (501)
+ .. +.|+ |+ ++++++.++.++|| +.++ .. ..+..+...+..+.+++ .+ ++
T Consensus 265 ~---------------~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~----~~-----~~ 315 (347)
T 2gop_A 265 V---------------GQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE----IV-----VY 315 (347)
T ss_dssp E---------------EEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS----SE-----EE
T ss_pred c---------------CCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC----cE-----EE
Confidence 2 44 8899 88 89999999999999 8854 33 44445566777888776 33 44
Q ss_pred eecccce--eeccc
Q 010801 451 RGLYRQA--HENSS 462 (501)
Q Consensus 451 ~~~~~~~--~iw~~ 462 (501)
+++.++. .+|..
T Consensus 316 ~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 316 LKETATRLRELFTW 329 (347)
T ss_dssp EEECSSSCCEEEEE
T ss_pred EEcCCCChHHheEe
Confidence 5544444 67743
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-13 Score=126.91 Aligned_cols=242 Identities=10% Similarity=0.048 Sum_probs=144.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
+.+.+|+++ ++|+++++...++.+.++............ .....+
T Consensus 24 ~~v~~va~d--~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~ 68 (329)
T 3fvz_A 24 GQVSGVALD--SKNNLVIFHRGDHVWDGNSFDSKFVYQQRG---------------------------------LGPIEE 68 (329)
T ss_dssp SCEEEEEEC--TTCCEEEEECTTCCCCTTSBCTTSCBSCGG---------------------------------GCSCCS
T ss_pred CCceEEEEC--CCCCEEEEeCCCCeEEeeccCcceeecccc---------------------------------cccccC
Confidence 679999997 788888888877654443332211100000 000124
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecC--CCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v 270 (501)
+.+.+||..... ....+..++......++++|+|+++++. .++.|++||.+.....+..+... +..-..+-...
T Consensus 69 ~~i~~~d~~~g~---~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P 145 (329)
T 3fvz_A 69 DTILVIDPNNAE---ILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP 145 (329)
T ss_dssp CCEEEECTTTCC---EEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred CcEEEEECCCCe---EEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence 567777765422 2233323455678899999999988888 88999999987322133322110 00012344568
Q ss_pred EEEEEec-CCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc-
Q 010801 271 TSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD- 346 (501)
Q Consensus 271 ~~v~~~p-~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~- 346 (501)
..++++| ++ +++++.+ .++.|++||. +++.. ..+...... .....++-.....++++|+ ++++++..
T Consensus 146 ~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~---~~~~~~~~~~p~gia~d~~~g~l~v~d~~ 216 (329)
T 3fvz_A 146 TDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSG---SSPRPGQFSVPHSLALVPHLDQLCVADRE 216 (329)
T ss_dssp EEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCS---SSCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred cEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCC---CCCCCcccCCCcEEEEECCCCEEEEEECC
Confidence 9999999 66 8888876 6999999994 44332 222210000 0000012235789999998 66555654
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE-------EeCCCeEEEEecCCCC
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-------GSYSNLLRIFSHGVGS 417 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-------~~~dg~i~iwd~~~~~ 417 (501)
++.|++||..+ ++.+..+....... . +..++|+| +..+++ ...+..|++|+..+++
T Consensus 217 ~~~I~~~~~~~-G~~~~~~~~~~~~~----------~---~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 217 NGRIQCFKTDT-KEFVREIKHASFGR----------N---VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TTEEEEEETTT-CCEEEEECCTTTTT----------C---EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCEEEEEECCC-CcEEEEEeccccCC----------C---cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 48999999974 77777775332211 1 15788998 433333 3345589999988774
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=146.99 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=153.9
Q ss_pred cccceEEEEEccCCCEEEE-----EecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 31 DVDIVSAIEFDKTGDYLAV-----GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~lat-----g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
|...+..++|||||++||. |+.+.+|++||+.+++.. . ..+.+.
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------------~--~~~~~~-- 167 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------------K--VDVIEG-- 167 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------------S--SCCBSC--
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------------C--CcccCc--
Confidence 4457999999999999994 444568999999988541 0 111100
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCe-------------EEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~-------------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
.....++|+ |||+.|+.++.|.. |++|++.++.....
T Consensus 168 --------~~~~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-------------------- 217 (695)
T 2bkl_A 168 --------GKYATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT-------------------- 217 (695)
T ss_dssp --------CTTCCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE--------------------
T ss_pred --------ccccceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce--------------------
Confidence 112678998 89999999988765 78887776542100
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCC----eEEEEECC
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLE 247 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~----~i~iwd~~ 247 (501)
.+... ..+...+.++.|+|||++|+.+ .++ .|++|+..
T Consensus 218 ------------------------------------lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 218 ------------------------------------VVHER-TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp ------------------------------------EEECC-CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred ------------------------------------EEEec-CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 00000 3455678899999999998876 444 66666654
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC----CCeEEEEEccCCcccccccceeecccccCCCccee
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
.+.... +..+...+....+ ++| . |+..+. ++.|.+||+.++.... ...++.. .
T Consensus 261 -~~~~~~--------l~~~~~~~~~~~~-~~g-~-l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~-~--------- 317 (695)
T 2bkl_A 261 -EKDFRL--------LVKGVGAKYEVHA-WKD-R-FYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPE-D--------- 317 (695)
T ss_dssp -CSSCEE--------EEECSSCCEEEEE-ETT-E-EEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECC-C---------
T ss_pred -CCceEE--------eecCCCceEEEEe-cCC-c-EEEEECCCCCCCEEEEEeCCCCCccC-CeEEecC-C---------
Confidence 233222 2233344555556 777 6 444443 5889999987753210 0012211 0
Q ss_pred eecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc-ccccccccccCCCCCcceeeEEEEcCCCcEEEE
Q 010801 324 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (501)
Q Consensus 324 ~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 401 (501)
....+..++++ ++.++++.. ++..+||.+...++....+..+ ...+ ..++++|+++.|+.
T Consensus 318 --~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l~~ 379 (695)
T 2bkl_A 318 --SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLMGLEDLDDAYY 379 (695)
T ss_dssp --SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCBSCTTCSEEEE
T ss_pred --CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEeecCCCCCEEEE
Confidence 02457778888 666666664 5888888776435555555433 2211 46788899877663
Q ss_pred E----eCCCeEEEEecCCCC
Q 010801 402 G----SYSNLLRIFSHGVGS 417 (501)
Q Consensus 402 ~----~~dg~i~iwd~~~~~ 417 (501)
. ...++|++||+.+++
T Consensus 380 ~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 380 VFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTEEEEEEEEETTTCC
T ss_pred EEcCCCCCCEEEEEECCCCc
Confidence 2 235789999998874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-12 Score=115.32 Aligned_cols=238 Identities=9% Similarity=0.019 Sum_probs=160.7
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.+++++++|+++++...++.|.+||.. ++.. . ..+..+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-------------------------~-~~~~~~~---------- 56 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-------------------------E-YPLPTPD---------- 56 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-------------------------E-EECSSTT----------
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-------------------------E-ecCCccc----------
Confidence 4679999999999987776667899999977 4320 0 0111222
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+..+++. +++.++++...++.|..|+.. ++.....
T Consensus 57 --~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-------------------------------------- 93 (299)
T 2z2n_A 57 --AKVMCLTIS--SDGEVWFTENAANKIGRITKK-GIIKEYT-------------------------------------- 93 (299)
T ss_dssp --CCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred --CceeeEEEC--CCCCEEEeCCCCCeEEEECCC-CcEEEEe--------------------------------------
Confidence 568889986 778877777668889999876 3321110
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.......+.++++.++|.++++. .++.|..||.. +.. .... .......+
T Consensus 94 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~------~~~~~~~~ 143 (299)
T 2z2n_A 94 ----------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKI-REYE------LPNKGSYP 143 (299)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE------CSSTTCCE
T ss_pred ----------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCE-EEec------CCCCCCCC
Confidence 01234467889999999888887 78899999984 332 2211 22334568
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
..+++++++ +++++...++.|..||. +++.. .+.. ......+..++++++|++.++.. .+.
T Consensus 144 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 144 SFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKI-----------PTPASGPVGITKGNDDALWFVEIIGNK 205 (299)
T ss_dssp EEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred ceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeC-----------CCCCCcceeEEECCCCCEEEEccCCce
Confidence 999999998 88887777889999998 55332 1111 01124578899999999777664 488
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
|.+||. + ++.. .+....... .+.+++++++|+++++...++.|..||.
T Consensus 206 i~~~~~-~-g~~~-~~~~~~~~~-------------~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 206 IGRITT-S-GEIT-EFKIPTPNA-------------RPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEECT-T-CCEE-EEECSSTTC-------------CEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EEEECC-C-CcEE-EEECCCCCC-------------CceeEEECCCCCEEEeccCCceEEEECC
Confidence 999998 4 4432 232111100 1168999999997777767889999998
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=142.57 Aligned_cols=249 Identities=10% Similarity=0.082 Sum_probs=158.0
Q ss_pred cccceEEEEEccCCCEEEEEecCC-----cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
|...+..++|||||++||.+..++ .|++||+.+++.. . ..+. .
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~-------------------------~-~~~~--~---- 170 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-------------------------P-DVLE--R---- 170 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------E-EEEE--E----
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------c-cccc--C----
Confidence 344689999999999999876543 8999999987541 0 1111 1
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeCCCe----------------EEEEeccccceeeeeccCCCccccccccccc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~----------------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (501)
..+..++|+ |||+.|+.++.++. |++|++.+++....
T Consensus 171 --------~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----------------- 223 (710)
T 2xdw_A 171 --------VKFSCMAWT--HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI----------------- 223 (710)
T ss_dssp --------ECSCCEEEC--TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-----------------
T ss_pred --------cccceEEEE--eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce-----------------
Confidence 236789998 89999999887765 66677655431100
Q ss_pred ccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-----CCeEEE
Q 010801 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINL 243 (501)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-----d~~i~i 243 (501)
.+... ..|...+..+.|+|||++|+.+ . +..|++
T Consensus 224 ---------------------------------------~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 224 ---------------------------------------LCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp ---------------------------------------EEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred ---------------------------------------EEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 00000 2345567889999999998875 3 578999
Q ss_pred EECCC------CCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC----CeEEEEEccCCcccccccceeecc
Q 010801 244 WNLEI------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDA 313 (501)
Q Consensus 244 wd~~~------~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~ 313 (501)
||+.. +...... +..+...+.. .|+|+| ..|+..+.. +.|.+||+.++... ..+.+..
T Consensus 264 ~d~~~~~~~~~~~~~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~- 331 (710)
T 2xdw_A 264 CDLQQESNGITGILKWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLVP- 331 (710)
T ss_dssp EEGGGSSSSSCSSCCCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEEC-
T ss_pred EECcccccccCCccceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cceeccC-
Confidence 99984 2212222 2334444444 488888 666655543 36999998775321 0012211
Q ss_pred cccCCCcceeeecc-cceeEEEEeeCCCEEEEEc-CC--cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeE
Q 010801 314 AESHGSKSFFTEII-ASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (501)
Q Consensus 314 ~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~~~~-~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (501)
.+. ..+..++|++++.++++.. ++ .|++||+.+ ++.+..+..+...+ ..
T Consensus 332 -----------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~~ 384 (710)
T 2xdw_A 332 -----------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------VG 384 (710)
T ss_dssp -----------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------EE
T ss_pred -----------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------EE
Confidence 011 2577889987777777664 45 466666643 66666666553332 57
Q ss_pred EEEcCCCcEEEEE-e---CCCeEEEEecCCCC
Q 010801 390 CSVSGDGLHFATG-S---YSNLLRIFSHGVGS 417 (501)
Q Consensus 390 ~~~s~~~~~l~s~-~---~dg~i~iwd~~~~~ 417 (501)
++++|+++.++.. + ..+.|++||+.+++
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8899998766533 3 25789999998875
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=124.43 Aligned_cols=237 Identities=8% Similarity=-0.005 Sum_probs=157.7
Q ss_pred ceEEEEEccCCCEEE-EEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~~g~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
...+++++++|++++ +...++.|.+|+..++... .....+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~----------- 66 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGL----------- 66 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSC-----------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCc-----------
Confidence 789999999999777 4467889999986654320 0011122
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+.+|++. +++.++++.. ++.|.+||..+.......
T Consensus 67 -~~p~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~~~~~~~--------------------------------------- 103 (270)
T 1rwi_B 67 -YQPQGLAVD--GAGTVYVTDF-NNRVVTLAAGSNNQTVLP--------------------------------------- 103 (270)
T ss_dssp -CSCCCEEEC--TTCCEEEEET-TTEEEEECTTCSCCEECC---------------------------------------
T ss_pred -CCcceeEEC--CCCCEEEEcC-CCEEEEEeCCCceEeeee---------------------------------------
Confidence 457889996 6777665555 889999998765422110
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
......+..+++.++|+++++. .++.|.+|+......... .......+.
T Consensus 104 ----------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~p~ 153 (270)
T 1rwi_B 104 ----------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------PFTGLNDPD 153 (270)
T ss_dssp ----------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--------CCCSCCSCC
T ss_pred ----------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--------ccccCCCce
Confidence 1222467889999999988877 788999997652222111 112233568
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
+++++|+| +++++...++.|.+||........ .... +...+..++++++|.++++.. ++.|
T Consensus 154 ~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~----~~~~-------------~~~~p~~i~~d~~g~l~v~~~~~~~v 215 (270)
T 1rwi_B 154 GVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVV----LPFT-------------DITAPWGIAVDEAGTVYVTEHNTNQV 215 (270)
T ss_dssp CEEECTTC-CEEEEEGGGTEEEEECTTTCCEEE----CCCS-------------SCCSEEEEEECTTCCEEEEETTTSCE
T ss_pred eEEEeCCC-CEEEEECCCCEEEEEecCCCceEe----eccc-------------CCCCceEEEECCCCCEEEEECCCCcE
Confidence 89999998 877777778899999987653221 0001 114578999999997777664 4899
Q ss_pred EEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 351 KLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.+||... ....... .+... ..+++++++|+++++...++.|+++++...
T Consensus 216 ~~~~~~~--~~~~~~~~~~~~~---------------p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 216 VKLLAGS--TTSTVLPFTGLNT---------------PLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEECTTC--SCCEECCCCSCSC---------------EEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEcCCC--CcceeeccCCCCC---------------ceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999853 3222221 11111 168999999998889999999999998765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-13 Score=140.45 Aligned_cols=239 Identities=8% Similarity=-0.073 Sum_probs=157.1
Q ss_pred CcccceEEEEecCCCCEEEEE-c-CC----eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC
Q 010801 216 AHDFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 289 (501)
+|...+..++|||||++|+.+ + +| .|++||+. +++..... + ....+..++|+||| +.|+.++.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~-tg~~~~~~------~--~~~~~~~~~wspDg-~~l~~~~~~ 191 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDV------L--ERVKFSCMAWTHDG-KGMFYNAYP 191 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEE------E--EEECSCCEEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCccc------c--cCcccceEEEEeCC-CEEEEEEEC
Confidence 444568899999999999876 3 33 89999999 44444321 1 11225679999999 888888877
Q ss_pred Ce----------------EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc------C
Q 010801 290 GF----------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------Y 347 (501)
Q Consensus 290 g~----------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~------~ 347 (501)
+. |++|++.++.... ..++.. ..|...+..+.|+|||++|+... +
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~--~~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSED--ILCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGC--EEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred CccccccccccccCCCCEEEEEECCCCcccc--eEEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 65 9999998764221 012222 11234578899999999988652 3
Q ss_pred CcEEEEEeeC------CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC----CeEEEEecCCCC
Q 010801 348 MNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS 417 (501)
Q Consensus 348 ~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 417 (501)
..|++||+.. .......+..+.... ...|+|+|+.|+..+.+ +.|.+||+.++.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 5899999874 222455555554432 23588898887766553 469999998764
Q ss_pred c-ceEEEecccC--cccceeeccCCccccCccceeeeecccce-eec--cc--cCCcccccccCCCeEEEEEccCCCEEE
Q 010801 418 A-GGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS--SGHHELSYNLSSKLLHLAWHPTTNLIA 489 (501)
Q Consensus 418 ~-~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw--~~--~~~~~~~~~~~~~i~~~~~sp~~~~la 489 (501)
. ....+..+.. .+..+.+.+ ++.+ +++...++. .+| +. ++....+..+...+..++++|+++.|+
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~--~~~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVR--SNFL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEET--TTEE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred cccceeccCCCCCCeEEEEEEEc--CCEE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 2 2345555544 566677764 5556 777888877 676 33 222333344466788899999998777
Q ss_pred Eee-----CCeEEEEe
Q 010801 490 CAN-----GNSLFFHY 500 (501)
Q Consensus 490 ~~~-----~~~~~i~~ 500 (501)
... ...+|.|+
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 553 24577775
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=129.03 Aligned_cols=259 Identities=9% Similarity=0.030 Sum_probs=144.2
Q ss_pred cceEEEEEccCCCEEEEEecC---Cc--EEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRG---GR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..+..++|||||++||.++.+ +. |.+|++.+++. ..+..+.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~----------------------------~~l~~~~------ 104 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS----------------------------KKILEAK------ 104 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE----------------------------EEEEEES------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce----------------------------EEEEcCC------
Confidence 568889999999999987754 33 77777776543 2223333
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
. +..++|+ |+|+.|+.++.+.. ......... ...+..+.....
T Consensus 105 ------~-~~~~~ws--pdg~~l~~~~~~~~------~~~~~~~~~---------------------~~~~~~~g~~~~- 147 (347)
T 2gop_A 105 ------N-IRSLEWN--EDSRKLLIVGFKRR------EDEDFIFED---------------------DVPAWFDDLGFF- 147 (347)
T ss_dssp ------E-EEEEEEC--TTSSEEEEEEECCC------C------------------------------CCCC--------
T ss_pred ------C-ccceeEC--CCCCEEEEEEccCC------CcCCcEEEc---------------------ccceeecCcccc-
Confidence 5 8889997 89999998875420 000000000 000000000000
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC------C-eEEEEECCCCCeeeeeeecC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------L-RINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d------~-~i~iwd~~~~~~~~~~~~~~ 259 (501)
......+.+|++.... .++.+ .. . .+..++|+|+| +++++ .+ . ...||.++ .++...+
T Consensus 148 --~~~~~~l~~~d~~~~~---~~~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l---- 213 (347)
T 2gop_A 148 --DGEKTTFWIFDTESEE---VIEEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM---- 213 (347)
T ss_dssp ----CEEEEEEEETTTTE---EEEEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE----
T ss_pred --cCccceEEEEECCCCe---EEeee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe----
Confidence 0002345566665432 11222 12 2 67789999999 77776 43 2 44555555 4443332
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCC--------CeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
..+ ..+..+ +|+| +.|+.++.+ ..|.+|| +++.. .+.. +|...+.
T Consensus 214 ----~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~-------------~~~~~~~ 266 (347)
T 2gop_A 214 ----FEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILD-------------EVDRGVG 266 (347)
T ss_dssp ----EEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESST-------------TCCSEEE
T ss_pred ----ccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCceE----eccc-------------cCCcccC
Confidence 223 444444 9999 777776644 3677787 33221 1111 1235677
Q ss_pred E-EEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE-
Q 010801 332 D-IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL- 408 (501)
Q Consensus 332 ~-~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i- 408 (501)
. +.|+ |+ +++++. ++.++|| +. .++..... .+...+ .+++|+| .++++++.++..
T Consensus 267 ~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~~~~~-~~~~~v---------------~~~~~s~--~~~~~~~~~~~~~ 324 (347)
T 2gop_A 267 QAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEIKPIA-KGRHWI---------------MGFDVDE--IVVYLKETATRLR 324 (347)
T ss_dssp EEEEET-TE-EEEEEEETTEEEEE-EE-SSSEEEEE-CSSSEE---------------EEEEESS--SEEEEEECSSSCC
T ss_pred CccEEc-Cc-EEEEEecCCcEEEE-Ec-CCceEEEe-cCCCeE---------------EeeeeeC--cEEEEEcCCCChH
Confidence 5 8999 88 777664 5899999 87 35543333 333322 6899999 677777777654
Q ss_pred EEEecCCCCcceEEEecccC
Q 010801 409 RIFSHGVGSAGGITVEAGKN 428 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~ 428 (501)
.||.++ ++ ...+..+..
T Consensus 325 ~l~~~~-g~--~~~lt~~n~ 341 (347)
T 2gop_A 325 ELFTWD-GE--EKQLTDYND 341 (347)
T ss_dssp EEEEES-SS--EEECCCTTS
T ss_pred HheEeC-Cc--EEEeccccH
Confidence 777776 42 234444443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-13 Score=123.21 Aligned_cols=244 Identities=10% Similarity=0.099 Sum_probs=154.4
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
+...+.+++|+|+|++++++..++.|.+||..+++.. .....+.
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------------------~~~~~~~--------- 86 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------RPFVSHK--------- 86 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------EEEECSS---------
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------------------EEeeCCC---------
Confidence 4566799999999998888888999999998876431 1122334
Q ss_pred ccccceeEEEEeecCCCCEEEEeeCC----CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~d----~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
..+.+++|+ ++++++++...+ +.|.+||..++........
T Consensus 87 ---~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------- 130 (333)
T 2dg1_A 87 ---ANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------------------------------- 130 (333)
T ss_dssp ---SSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-------------------------------
T ss_pred ---CCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-------------------------------
Confidence 669999997 788877776666 6899999887664322100
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c------CCeEEEEECCCCCeeeeeeecC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
..+...+.+++++|+|+++++. . .+.|..+|.. .++....
T Consensus 131 ----------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~~~~---- 177 (333)
T 2dg1_A 131 ----------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI---- 177 (333)
T ss_dssp ----------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE----
T ss_pred ----------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEEEEe----
Confidence 1234568899999999888876 3 2456666655 2222221
Q ss_pred CCCCCCcccceEEEEEecCCCcEE-EEEeCCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEee
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 337 (501)
......+..++|+|++ +.| ++.+.++.|.+||+.+ +... ..+..... ..+.++ ..+..+++++
T Consensus 178 ----~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~~-----~~~~~~-~~~~~i~~d~ 242 (333)
T 2dg1_A 178 ----IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATIP-----YYFTGH-EGPDSCCIDS 242 (333)
T ss_dssp ----EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEE-----EECCSS-SEEEEEEEBT
T ss_pred ----ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceEE-----EecCCC-CCCCceEECC
Confidence 1122357889999998 755 4555688999999964 2211 11100000 000111 3567899999
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 405 (501)
+|+++++.. ++.|.+||.. ++.+..+..+..... ....+.+++|+||++.|+.++.+
T Consensus 243 ~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~g---------~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 243 DDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCEEEEEcCCCEEEEECCC--CCEEEEEEcCCCccc---------cccCcceEEECCCCCEEEEEeCc
Confidence 999877764 4899999973 666666654322000 00001689999998777655554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-13 Score=121.09 Aligned_cols=235 Identities=10% Similarity=-0.004 Sum_probs=155.8
Q ss_pred CcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 216 AHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
.+.....+++|+|+++ +++++ .++.|..|+.... ... +..+...+.+++++|+| +++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~-------~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSP-------EMHPSHHQNGHCLNKQG-HLIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEE-------EESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEE-------EECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence 3445677899999998 67777 8999999999843 332 23355678999999999 8887777779999
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE----Ec-----------C-CcEEEEEeeC
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD-----------Y-MNLKLWDIRM 357 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~----~~-----------~-~~i~lwd~~~ 357 (501)
+||..+++.. ........ .....+..++++|+|+++++ |+ + +.-.||.+..
T Consensus 94 ~~d~~~g~~~----~~~~~~~~---------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 94 RQREPGGEWE----SIADSFEG---------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp EECSTTCCEE----EEECEETT---------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred EEcCCCCcEE----EEeeccCC---------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 9999776532 11111000 01235778999999998887 32 0 1235555543
Q ss_pred CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC-CCCc-c-eEEEecccCccccee
Q 010801 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG-VGSA-G-GITVEAGKNENRKPI 434 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~-~-~~~~~~~~~~v~~~~ 434 (501)
.+ .+..+..+.... ..++|+|+++.|++.+.++.|++|++. ++.. . ...+..+...+..++
T Consensus 161 ~g-~~~~~~~~~~~~---------------~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 161 DG-TLSAPIRDRVKP---------------NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR 224 (296)
T ss_dssp TS-CEEEEECCCSSE---------------EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred CC-CEEEeecCCCCC---------------ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence 23 333333222221 689999999998778888999999997 4432 1 223333455567788
Q ss_pred eccCCccccCccceeeeecccce-eeccccCCccc-ccccCCCeEEEEE-ccCCCEEEEeeCCeEEEEe
Q 010801 435 LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHEL-SYNLSSKLLHLAW-HPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~-~~~~~~~i~~~~~-sp~~~~la~~~~~~~~i~~ 500 (501)
+.+ +|++ .++. ++. .+|+....... ...+.. +++++| .|+++.|.+++.++++-+.
T Consensus 225 ~d~--~G~l-----~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 225 VDA--GGLI-----WASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp EBT--TSCE-----EEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred ECC--CCCE-----EEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 877 6665 4544 445 88855543332 333444 889999 6899999999988887664
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-12 Score=116.95 Aligned_cols=248 Identities=10% Similarity=0.032 Sum_probs=165.2
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
.+++|++++.|+.|.+||.++|+.. -.+..+.. ..+.++.+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~---------------------------w~~~~~~~-----------~~~~~~~~~ 45 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV---------------------------WEYPLEKG-----------WECNSVAAT 45 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE---------------------------EEEECCTT-----------CCCCEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE---------------------------EEeCCCcc-----------CCCcCeEEC
Confidence 4688999999999999999887642 33433320 247888887
Q ss_pred ecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 123 ~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
|+|++++ +.++.|..||. +++.+... .
T Consensus 46 --pdG~ilv--s~~~~V~~~d~-~G~~~W~~------------------------------------------------~ 72 (276)
T 3no2_A 46 --KAGEILF--SYSKGAKMITR-DGRELWNI------------------------------------------------A 72 (276)
T ss_dssp --TTSCEEE--ECBSEEEEECT-TSCEEEEE------------------------------------------------E
T ss_pred --CCCCEEE--eCCCCEEEECC-CCCEEEEE------------------------------------------------c
Confidence 7888888 45778999998 66644332 2
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 280 (501)
......+.++.+.++|+++++. . ++.|..+|.+ ++.+..+.... ....+......+++.++|
T Consensus 73 ------------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G- 136 (276)
T 3no2_A 73 ------------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG- 136 (276)
T ss_dssp ------------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-
T ss_pred ------------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-
Confidence 1223457788899999999987 5 7778777764 44443333221 122233345667789999
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS 359 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~ 359 (501)
+++++...++.|..||.. ++.. ..+.. ......+...++|++++++.+ +.|..+|..+ +
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G 196 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-N 196 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-C
T ss_pred CEEEEecCCCEEEEECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-C
Confidence 999999999999999987 7643 23332 134566778899999988765 7899999876 8
Q ss_pred CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC--------CeEEEEecCCCCcceEEEecc
Q 010801 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~ 426 (501)
+.+.++........ ....+..++..++|.++++.... +..+++++.....+..++...
T Consensus 197 ~~~w~~~~~~~~~~---------~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 197 RIVRRVNANDIEGV---------QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp CEEEEEEGGGSBSC---------CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred cEEEEecCCCCCCc---------cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 88888864432100 11223688899999988887421 244667775443444444433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-13 Score=137.84 Aligned_cols=238 Identities=6% Similarity=-0.038 Sum_probs=148.6
Q ss_pred CCcccceEEEEecCCCCEEEEE------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC
Q 010801 215 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 288 (501)
.+|...+.+++|||||++|+.+ ++..|++||+.++. .+.. ..+... ....++|+||| +.|+.++.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~-~~~~-----~~~~~~--~~~~~~wspDg-~~l~~~~~ 187 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE-WSKV-----DVIEGG--KYATPKWTPDS-KGFYYEWL 187 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC-BCSS-----CCBSCC--TTCCCEECTTS-SEEEEEEC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC-CcCC-----cccCcc--cccceEEecCC-CEEEEEEe
Confidence 3566678899999999999853 34689999999443 3200 012111 12678999999 88998888
Q ss_pred CCe-------------EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC----cE
Q 010801 289 RGF-------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM----NL 350 (501)
Q Consensus 289 dg~-------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~----~i 350 (501)
|.. |++|++.++..... .++.. .+|...+..+.|+|||++|+... ++ .|
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l 254 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER-----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDV 254 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC-----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec-----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence 766 99999987653211 22222 12345788999999999988653 23 56
Q ss_pred EEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe---CCCeEEEEecCCCCcc-eEEEecc
Q 010801 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAG-GITVEAG 426 (501)
Q Consensus 351 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~ 426 (501)
++|+.. ......+..+.... ....+ ++|.+++... .++.|.+||+.++... ...+..+
T Consensus 255 ~~~~~~--~~~~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 316 (695)
T 2bkl_A 255 YWKRPG--EKDFRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE 316 (695)
T ss_dssp EEECTT--CSSCEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred EEEcCC--CCceEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence 666543 33344554444332 34555 5666444444 2588999999876431 2333333
Q ss_pred --cCcccceeeccCCccccCccceeeeecccce-eecccc--C-Cccccccc-CCCeEEEEEccCCCEEEEeeC-----C
Q 010801 427 --KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G-HHELSYNL-SSKLLHLAWHPTTNLIACANG-----N 494 (501)
Q Consensus 427 --~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~-~~~~~~~~-~~~i~~~~~sp~~~~la~~~~-----~ 494 (501)
...+..+.+. ++.+ +++...++. ++|..+ + .......+ ...|..++++|+++.|+.... .
T Consensus 317 ~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 388 (695)
T 2bkl_A 317 DSSASLLSVSIV---GGHL-----SLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR 388 (695)
T ss_dssp CSSCEEEEEEEE---TTEE-----EEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred CCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 3445666665 4555 788888888 888322 2 22222222 556778899999988775442 3
Q ss_pred eEEEEe
Q 010801 495 SLFFHY 500 (501)
Q Consensus 495 ~~~i~~ 500 (501)
.+|+|+
T Consensus 389 ~v~~~d 394 (695)
T 2bkl_A 389 QIYKTS 394 (695)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 577775
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-11 Score=118.28 Aligned_cols=320 Identities=12% Similarity=0.041 Sum_probs=184.8
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEec--CCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
....+..+.|+|||++|++++.|+.|.+||+. +++. ...+...
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~---------------------------v~~i~~G-------- 239 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---------------------------VAEIKIG-------- 239 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---------------------------EEEEECC--------
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---------------------------eEEEecC--------
Confidence 34467799999999999999999999999985 4332 2333322
Q ss_pred ccccccceeEEEEee--cCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCccccccccccc-ccCccccCCCCCC-c
Q 010801 109 SLEIEEKINRVRWCA--APNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPSF-A 183 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~--~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~ 183 (501)
.....++|++ .|+|++++++. .+++|.++|..+.+........... +.. ..++ ...+..+..++.. .
T Consensus 240 -----~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-~~~--~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 240 -----SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDE--QEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp -----SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTT--CCEESCCCEEEEEECSSSSE
T ss_pred -----CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-ccc--ccccCCCceEEEEEcCCCCE
Confidence 2356788861 14888888876 5699999999888776654321100 000 0000 0011111111111 1
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeec-CC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-KP 260 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~-~~ 260 (501)
+++ .....+.+.++|........ ... .........+.|+|+|++++++ .++.|.++|.. .++....+.+ .
T Consensus 312 ~vv--~~~~~g~v~~vd~~~~~~~~-v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg- 384 (567)
T 1qks_A 312 FIV--NVKETGKILLVDYTDLNNLK-TTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG- 384 (567)
T ss_dssp EEE--EETTTTEEEEEETTCSSEEE-EEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS-
T ss_pred EEE--EecCCCeEEEEecCCCccce-eee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcEEEEEeccC-
Confidence 111 12345677777776532211 111 1233456688999999998775 78999999999 4555555433 1
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCccccc---ccceeecccccCCCcceeeecccceeEEEEe
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFA 336 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 336 (501)
...|.+.-..+ ++|++..+++++. .++.|.++|....+.... .++.+.. ....-..+..+
T Consensus 385 --~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-------------~g~g~~~i~~~ 448 (567)
T 1qks_A 385 --QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-------------LGGGSLFIKTH 448 (567)
T ss_dssp --SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SCSCCCCEECC
T ss_pred --cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-------------CCCCCEEEEeC
Confidence 12343221222 6888525555554 468999999987432111 1122222 11233457789
Q ss_pred eCCCEEEEEc--------CCcEEEEEeeCC-----CCceeEeeccc-cccccccccCCCCCcceeeEEEEcCCCcEEEEE
Q 010801 337 NDGQHLLSRD--------YMNLKLWDIRMD-----STPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (501)
Q Consensus 337 p~~~~l~~~~--------~~~i~lwd~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 402 (501)
|+++++.+.. .++|.++|+.+. .+....+.... ..+ .. .--.+..+.|+|+|+.+...
T Consensus 449 p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 449 PNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI------TE--GQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp TTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC------CS--SCCEEEEEEECTTSSEEEEE
T ss_pred CCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc------CC--CCcceEeeeECCCCCEEEEE
Confidence 9999988754 259999999863 22223332100 000 00 00012689999999877655
Q ss_pred e-----CCCeEEEEecCCCCcceEEEec
Q 010801 403 S-----YSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 403 ~-----~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
. .++.|.|+|.++.+ +...++.
T Consensus 521 ~~~~~~~~~~i~v~D~~t~~-~~~~i~~ 547 (567)
T 1qks_A 521 VWNGKDQESALVVVDDKTLE-LKHVIKD 547 (567)
T ss_dssp EECCTTSCCEEEEEETTTTE-EEEEECC
T ss_pred eecCCCCCCcEEEEECCCce-EEEEeCC
Confidence 3 37999999999873 3344543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-12 Score=118.01 Aligned_cols=223 Identities=12% Similarity=-0.027 Sum_probs=143.2
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
....+.+. ++..+++...++.|.+||..+++.+...
T Consensus 45 ~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i----------------------------------------- 80 (328)
T 3dsm_A 45 VAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRI----------------------------------------- 80 (328)
T ss_dssp CEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEE-----------------------------------------
T ss_pred cceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEc-----------------------------------------
Confidence 35677774 4556666667899999999988765432
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
........++++++++.+++. .++.|.+||.. ..+....+.... ..+.......+
T Consensus 81 ---------------------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~--~~~~~~~p~~i 136 (328)
T 3dsm_A 81 ---------------------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPD--MDMESGSTEQM 136 (328)
T ss_dssp ---------------------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTT--CCTTTCBCCCE
T ss_pred ---------------------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCC--ccccCCCcceE
Confidence 112456788998898666666 79999999998 444444432211 01111234566
Q ss_pred EEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C----
Q 010801 274 EFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---- 347 (501)
Q Consensus 274 ~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~---- 347 (501)
++ .++ +++++.. .++.|.++|+.+++.. ..+.. ......++++|+|++++++. +
T Consensus 137 ~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 137 VQ-YGK-YVYVNCWSYQNRILKIDTETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp EE-ETT-EEEEEECTTCCEEEEEETTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred EE-ECC-EEEEEcCCCCCEEEEEECCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCC
Confidence 67 344 5555544 4899999999987654 22322 12456788999999777653 2
Q ss_pred ------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 010801 348 ------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (501)
Q Consensus 348 ------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (501)
+.|.++|..+ ++....+.......+ ..++|+|++++|..+.. .|.+||..+++....
T Consensus 197 ~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p--------------~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~ 259 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAET-FTVEKQFKFKLGDWP--------------SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR 259 (328)
T ss_dssp SSCBCCCEEEEEETTT-TEEEEEEECCTTCCC--------------EEEEECTTSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred ccccCCceEEEEECCC-CeEEEEEecCCCCCc--------------eeEEEecCCCEEEEEcc--EEEEEECCCCceeee
Confidence 5799999875 666656553221111 68999999998887765 899999988753211
Q ss_pred E-EecccCcccceeeccCCcccc
Q 010801 422 T-VEAGKNENRKPILQAAPRARR 443 (501)
Q Consensus 422 ~-~~~~~~~v~~~~~~~~~~~~~ 443 (501)
. +.........+++.|. ++++
T Consensus 260 ~~~~~~~~~p~gi~vdp~-~g~l 281 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPN-NGEV 281 (328)
T ss_dssp CSBCCCSSCEEEEEECTT-TCCE
T ss_pred eeecCCCCceEEEEEcCC-CCeE
Confidence 1 1222345667778774 4444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-10 Score=105.40 Aligned_cols=239 Identities=9% Similarity=0.043 Sum_probs=160.0
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.+++++++|++.++...++.|.+|+.. ++.. . ..+..+.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-------------------------~-~~~~~~~---------- 61 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-------------------------E-FEVPTPD---------- 61 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-------------------------E-EECCCCC----------
Confidence 4678999999999988777678899999976 4321 1 1112222
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+..+++. +++.++++...++.|..||.. ++.....
T Consensus 62 --~~~~~i~~~--~~g~l~v~~~~~~~v~~~d~~-g~~~~~~-------------------------------------- 98 (300)
T 2qc5_A 62 --AKVMCLIVS--SLGDIWFTENGANKIGKLSKK-GGFTEYP-------------------------------------- 98 (300)
T ss_dssp --CCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred --CcceeEEEC--CCCCEEEEecCCCeEEEECCC-CCeEEec--------------------------------------
Confidence 557888886 778777776667889999877 5432211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.......+.++++.++|.++++. .++.|..+|.. +. .... . +......+
T Consensus 99 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~-----~~~~~~~~ 148 (300)
T 2qc5_A 99 ----------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IYEY-D-----LPNKGSYP 148 (300)
T ss_dssp ----------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEE-E-----CSSTTCCE
T ss_pred ----------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EEEc-c-----CCCCCCCc
Confidence 01223567889999999888887 68899999987 33 2221 1 22234567
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-Cc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~ 349 (501)
.++++.+++ +++++...++.|..+|. +++.. .+.. ..+...+..+++.++|++.++... +.
T Consensus 149 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 149 AFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL-----------PTNAAAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred eeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC-----------CCCCCCcceEEECCCCCEEEEccCCCE
Confidence 899999998 87776666889999998 44322 1111 011245789999999987777654 78
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|.+||. . ++... +....... .+.+++++++|+++++...++.|..|+..
T Consensus 211 i~~~~~-~-g~~~~-~~~~~~~~-------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 211 IGRITT-T-GEISE-YDIPTPNA-------------RPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEECT-T-CCEEE-EECSSTTC-------------CEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEEEcC-C-CcEEE-EECCCCCC-------------CceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 999987 2 44332 21111100 11689999999977777677899999973
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-12 Score=114.31 Aligned_cols=247 Identities=11% Similarity=0.127 Sum_probs=156.4
Q ss_pred cceEEEEEccCCCEEEE-------EecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEee--eccCCcc
Q 010801 33 DIVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPE 103 (501)
Q Consensus 33 ~~v~~v~~s~~g~~lat-------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~ 103 (501)
....+++|+++|+++++ +..++.|.+||..+++.. .... ..++.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------------~~~~~~~~~~~-- 70 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------------------------VICKPEVNGYG-- 70 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-------------------------EEECCEETTEE--
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-------------------------EEEecccCCCC--
Confidence 45689999999998887 677899999998766431 1000 01233
Q ss_pred hhhccccccccceeEEEEeecCC-CCEEEEeeCCCeEEEEeccccceeee-eccCCCcccccccccccccCccccCCCCC
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~-~~~l~s~s~d~~i~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
..+..+++. ++ +.+++ ++..+.|.+||.. ++.... .... .
T Consensus 71 ----------~~~~~i~~~--~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~--~---------------------- 112 (314)
T 1pjx_A 71 ----------GIPAGCQCD--RDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDS--E---------------------- 112 (314)
T ss_dssp ----------CCEEEEEEC--SSSSEEEE-EETTTEEEEEETT-SCEEECCSBCT--T----------------------
T ss_pred ----------CCCceEEEe--cCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccC--C----------------------
Confidence 568889986 66 55444 4444478889987 654332 1100 0
Q ss_pred CcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC---------------CeEEEEE
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLWN 245 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------------~~i~iwd 245 (501)
......+.++++.++|+++++. .+ +.|..|+
T Consensus 113 ---------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 113 ---------------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp ---------------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred ---------------------------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 1122457789999999888876 54 5677676
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEe----cCCCcEEEEE-eCCCeEEEEEcc-CCcccccccceeecccccCCC
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFH----PIYCNLLAYS-SSRGFVRLVDMR-QSALCDHSARILRDAAESHGS 319 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~----p~~~~~l~~~-~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~ 319 (501)
.. +..... ..+......++++ |++ +.|+++ ..++.|.+||+. +++... ...+..
T Consensus 160 ~~--g~~~~~--------~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~------- 219 (314)
T 1pjx_A 160 TD--GQMIQV--------DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH------- 219 (314)
T ss_dssp TT--SCEEEE--------EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE-------
T ss_pred CC--CCEEEe--------ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE-------
Confidence 55 322221 1123346789999 998 665555 567899999986 332110 011111
Q ss_pred cceeeecc-cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 320 KSFFTEII-ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 320 ~~~~~~h~-~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
+.++. .....++++++|+++++.. ++.|.+||.++ ++.+..+..+...+ .+++|+|+++
T Consensus 220 ---~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~---------------~~i~~~~dg~ 280 (314)
T 1pjx_A 220 ---IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLHFKPQTK 280 (314)
T ss_dssp ---CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEEECTTSS
T ss_pred ---CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCc---------------eeEEECCCCC
Confidence 11122 4567899999998887764 58999999864 55555555443222 6899999999
Q ss_pred EE-EEEeCCCeEEEEecCCC
Q 010801 398 HF-ATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 398 ~l-~s~~~dg~i~iwd~~~~ 416 (501)
.| ++...++.|..|++...
T Consensus 281 ~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 281 TIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEETTTTEEEEEECSSC
T ss_pred EEEEEeCCCCeEEEEeCCCC
Confidence 55 45556789999998753
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-11 Score=110.87 Aligned_cols=198 Identities=11% Similarity=0.071 Sum_probs=140.4
Q ss_pred CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCce
Q 010801 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (501)
Q Consensus 126 ~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 205 (501)
.++.|++++.|+.|.+||.++++.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~---------------------------------------------------- 31 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEY---------------------------------------------------- 31 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEE----------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEe----------------------------------------------------
Confidence 4688999999999999999888865443
Q ss_pred eeeeeEeecCCcc-cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 206 HARCQKVYPHAHD-FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 206 ~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
..+. ..+.++.+.|+|++++ +.++.|..||.. ++...+. . . +....+.++.+.|+| ++++
T Consensus 32 ---------~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~~~W~~-~-----~-~~~~~~~~~~~~~dG-~~lv 92 (276)
T 3no2_A 32 ---------PLEKGWECNSVAATKAGEILF-SYSKGAKMITRD-GRELWNI-A-----A-PAGCEMQTARILPDG-NALV 92 (276)
T ss_dssp ---------ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT-SCEEEEE-E-----C-CTTCEEEEEEECTTS-CEEE
T ss_pred ---------CCCccCCCcCeEECCCCCEEE-eCCCCEEEECCC-CCEEEEE-c-----C-CCCccccccEECCCC-CEEE
Confidence 1222 3567889999999888 556789999984 5544332 1 1 122467889999999 9998
Q ss_pred EEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCce
Q 010801 285 YSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 362 (501)
Q Consensus 285 ~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~ 362 (501)
+.+. ++.|..+|. +++.. ..+.. . .. ..++......+++.++|+++++.. ++.|..||.. ++.+
T Consensus 93 ~~~~~~~~v~~vd~-~Gk~l----~~~~~-~--~~----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~ 158 (276)
T 3no2_A 93 AWCGHPSTILEVNM-KGEVL----SKTEF-E--TG----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLL 158 (276)
T ss_dssp EEESTTEEEEEECT-TSCEE----EEEEE-C--CS----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEE
T ss_pred EecCCCCEEEEEeC-CCCEE----EEEec-c--CC----CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEE
Confidence 8887 788888886 45433 22221 0 00 001123455667899999999886 4999999985 7888
Q ss_pred eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
.++...... .++...++|+++++++.++.|..+|.++++.+ .++..
T Consensus 159 w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-w~~~~ 204 (276)
T 3no2_A 159 NSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-RRVNA 204 (276)
T ss_dssp EEEECSSCC----------------CEEEECTTSCEEEECBTTSEEEEECTTTCCEE-EEEEG
T ss_pred EEEECCCCc----------------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-EEecC
Confidence 887765332 46888899999999999999999999988443 55543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=133.16 Aligned_cols=244 Identities=11% Similarity=0.042 Sum_probs=147.1
Q ss_pred cceEEEEEccCCCEEEEEecC-----CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
..+..++|||||++||.+..+ ..|++||+.+++.. ....+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~----------------------------~~~~~~------ 208 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL----------------------------ADELKW------ 208 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE----------------------------EEEEEE------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC----------------------------CccCCC------
Confidence 478899999999999987644 36999999988541 111111
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCe--------------EEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKT--------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~--------------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
..+..++|+ || +.|+.++.|+. |++|++.++....
T Consensus 209 ------~~~~~~~ws--pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~---------------------- 257 (741)
T 1yr2_A 209 ------VKFSGLAWL--GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD---------------------- 257 (741)
T ss_dssp ------EESCCCEES--TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC----------------------
T ss_pred ------ceeccEEEE--CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC----------------------
Confidence 224678897 77 88888876653 5555554433100
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC-----CeEEEEECC
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLE 247 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d-----~~i~iwd~~ 247 (501)
..+... ..+...+..+.|+|||++|+.. .+ ..|++||+.
T Consensus 258 ----------------------------------~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~ 302 (741)
T 1yr2_A 258 ----------------------------------QPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT 302 (741)
T ss_dssp ----------------------------------EEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred ----------------------------------EEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence 011000 2333457889999999988875 43 389999998
Q ss_pred CCCee-eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC----CCeEEEEEccCCc-ccccccceeecccccCCCcc
Q 010801 248 ISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKS 321 (501)
Q Consensus 248 ~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (501)
.+... ... +..+...+... +.|+| +.|+..+. ++.|.+||+.++. .. ..++..
T Consensus 303 ~~~~~~~~~-------l~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~~~--------- 361 (741)
T 1yr2_A 303 NGKIGPVTA-------LIPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVVPE--------- 361 (741)
T ss_dssp TTEECCCEE-------EECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE---EEEECC---------
T ss_pred CCCCcccEE-------ecCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc---EEEecC---------
Confidence 43111 222 22233334444 34888 77776665 4559999987642 11 022222
Q ss_pred eeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc-ccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 322 FFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 322 ~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
+...+..+.++ ++.++++.. ++..+||.+...++....+..+ ...+ ..++++|+++.|
T Consensus 362 ----~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l 421 (741)
T 1yr2_A 362 ----SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSA---------------SGLSGRPGDRHA 421 (741)
T ss_dssp ----CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEE---------------EEEECCBTCSCE
T ss_pred ----CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEE---------------EEeecCCCCCEE
Confidence 23346677777 455556554 5777777665335555555432 2211 578899998755
Q ss_pred E-EEe---CCCeEEEEecCCCC
Q 010801 400 A-TGS---YSNLLRIFSHGVGS 417 (501)
Q Consensus 400 ~-s~~---~dg~i~iwd~~~~~ 417 (501)
+ +.+ ..++|++||+.+++
T Consensus 422 ~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 422 YLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCEEEEEECCCCc
Confidence 5 222 35789999998763
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-11 Score=113.55 Aligned_cols=233 Identities=6% Similarity=-0.090 Sum_probs=144.2
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
.....+.+. +++++++. .++.|.+||..+ .+.+..+ . .......+++++++ +++++...++.|.+||.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i-------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~ 112 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRI-------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINP 112 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEE-------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEET
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEc-------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEEC
Confidence 345667664 34455566 789999999994 4444432 1 23457899999998 76666658999999999
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeeccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
.+++.. ..+.. ... .+.......+++ .+++++++.. ++.|.++|+.+ ++.+..+.....+
T Consensus 113 ~t~~~~----~~i~~-g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p---- 174 (328)
T 3dsm_A 113 KTYEIT----GYIEC-PDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP---- 174 (328)
T ss_dssp TTTEEE----EEEEC-TTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB----
T ss_pred CCCeEE----EEEEc-CCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc----
Confidence 987643 22332 000 000113456667 4555555542 58999999986 7777766644333
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCC----------CeEEEEecCCCCcceEEEecc-cCcccceeeccCCccccC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYS----------NLLRIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRS 444 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 444 (501)
..++++|+|+++++...+ +.|.++|..+++ +...+... ......++++| +++.
T Consensus 175 ------------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g~~p~~la~~~--d~~~- 238 (328)
T 3dsm_A 175 ------------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLGDWPSEVQLNG--TRDT- 238 (328)
T ss_dssp ------------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTTCCCEEEEECT--TSCE-
T ss_pred ------------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCCCCceeEEEec--CCCE-
Confidence 478999999988777655 789999998874 33444432 23677889988 4444
Q ss_pred ccceeeeecccceeeccccC-Cc-ccc-ccc-CCCeEEEEEccCC-CEEEEe----e-CCeEEEEeC
Q 010801 445 SLSNLTRGLYRQAHENSSSG-HH-ELS-YNL-SSKLLHLAWHPTT-NLIACA----N-GNSLFFHYA 501 (501)
Q Consensus 445 ~~~~l~~~~~~~~~iw~~~~-~~-~~~-~~~-~~~i~~~~~sp~~-~~la~~----~-~~~~~i~~~ 501 (501)
|..... ...+|+... .+ ... ... ......++++|++ .+.++. . .+.+++|++
T Consensus 239 ----lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 239 ----LYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ----EEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred ----EEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 433333 225553332 11 111 111 3567899999954 554554 2 456888863
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-11 Score=107.32 Aligned_cols=197 Identities=8% Similarity=0.009 Sum_probs=127.5
Q ss_pred ceeEEEEeecCCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 115 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
...++++. +++.+++ +.+.++.|.+|+..+.......
T Consensus 25 ~p~~i~~~--~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~---------------------------------------- 62 (270)
T 1rwi_B 25 SPSGVAVD--SAGNVYVTSEGMYGRVVKLATGSTGTTVLP---------------------------------------- 62 (270)
T ss_dssp CEEEEEEC--TTCCEEEEECSSSCEEEEECC-----EECC----------------------------------------
T ss_pred CccceEEC--CCCCEEEEccCCCCcEEEecCCCcccceEe----------------------------------------
Confidence 57788886 7788776 4467889999987654322110
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
..+...+.++++.++|+++++..++.|.+||.. +...... .......+.++
T Consensus 63 ---------------------~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~-~~~~~~~-------~~~~~~~p~~i 113 (270)
T 1rwi_B 63 ---------------------FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG-SNNQTVL-------PFDGLNYPEGL 113 (270)
T ss_dssp ---------------------CCSCCSCCCEEECTTCCEEEEETTTEEEEECTT-CSCCEEC-------CCCSCSSEEEE
T ss_pred ---------------------eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC-CceEeee-------ecCCcCCCcce
Confidence 122345677999999985555578899999987 3332211 11223567899
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 352 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~l 352 (501)
+++|+| +++++...++.|.+|+..+.... .... .....+..++++|+|+++++.. ++.|.+
T Consensus 114 ~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~-----~~~~------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 114 AVDTQG-AVYVADRGNNRVVKLAAGSKTQT-----VLPF------------TGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp EECTTC-CEEEEEGGGTEEEEECTTCCSCE-----ECCC------------CSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred EECCCC-CEEEEECCCCEEEEEECCCceeE-----eecc------------ccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 999998 87777777899999975543211 1000 0123578899999999777664 489999
Q ss_pred EEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
||... ............. ...++++++|.++++...++.|.+|+....
T Consensus 176 ~~~~~-~~~~~~~~~~~~~---------------p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 176 LEAES-NNQVVLPFTDITA---------------PWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp ECTTT-CCEEECCCSSCCS---------------EEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EecCC-CceEeecccCCCC---------------ceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 99863 3322211111111 168999999988888878899999998654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.47 E-value=8.3e-11 Score=107.98 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=131.0
Q ss_pred cceeEEEEeecCCCCEEEE-------eeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 114 EKINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s-------~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
....+++|. +++.++++ ...++.|.+|+..+++.......
T Consensus 18 ~~~~~~~~~--~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------------------------- 64 (314)
T 1pjx_A 18 PGAEGPVFD--KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP------------------------------- 64 (314)
T ss_dssp TTCEEEEEC--TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-------------------------------
T ss_pred CCccCceEC--CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-------------------------------
Confidence 446788996 77877777 57788999999877764332100
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-CCEEEEEcCCeEEEEECCCCCeeeee-eecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~ 264 (501)
. ..++...+.+++++++ ++++++...+.|.+||.+ +. .... ... ...
T Consensus 65 -------------------------~-~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~-~~~~~~~~---~~~ 113 (314)
T 1pjx_A 65 -------------------------E-VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT-FEEIAKKD---SEG 113 (314)
T ss_dssp -------------------------E-ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC-EEECCSBC---TTS
T ss_pred -------------------------c-cCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC-EEEEEecc---CCC
Confidence 0 0234456889999999 766666655589999987 33 2221 100 011
Q ss_pred CcccceEEEEEecCCCcEEEEEeCC---------------CeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~d---------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.....+.+++++++| +++++...+ +.|..||.. ++.. ..... ...
T Consensus 114 ~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~~--------------~~~ 173 (314)
T 1pjx_A 114 RRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDTA--------------FQF 173 (314)
T ss_dssp CBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEEE--------------ESS
T ss_pred ccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----EeccC--------------CCC
Confidence 123457899999998 877776655 567777654 3221 11111 234
Q ss_pred eeEEEEe----eCCCEEEEE-c-CCcEEEEEeeCCCCc-----eeEeeccc-cccccccccCCCCCcceeeEEEEcCCCc
Q 010801 330 ISDIKFA----NDGQHLLSR-D-YMNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 330 i~~~~~s----p~~~~l~~~-~-~~~i~lwd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
...++++ |+++.|..+ . ++.|.+||....++. ...+..+. .. ...++++++|+
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------p~~i~~d~~G~ 238 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---------------ADGMDFDEDNN 238 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---------------EEEEEEBTTCC
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---------------CCceEECCCCC
Confidence 6788999 999766554 3 489999998632331 11122111 11 15799999999
Q ss_pred EEEEEeCCCeEEEEecCCCC
Q 010801 398 HFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 398 ~l~s~~~dg~i~iwd~~~~~ 417 (501)
++++...++.|.+||.++++
T Consensus 239 l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEEETTTEEEEECTTCBS
T ss_pred EEEEEcCCCEEEEEcCCCCc
Confidence 98888888999999987653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-12 Score=128.34 Aligned_cols=236 Identities=9% Similarity=0.012 Sum_probs=142.8
Q ss_pred CcccceEEEEecCCCCEEEEE-c-C----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC
Q 010801 216 AHDFNINSISNNSDCETFVSA-D-D----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 289 (501)
+|...+..++|||||+.|+.+ + + ..|++||+.+ ++.+.. ..+...+..++|+|| +.|+.++.+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t-g~~~~~--------~~~~~~~~~~~wspD--~~l~~~~~~ 228 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD-GKPLAD--------ELKWVKFSGLAWLGN--DALLYSRFA 228 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT-CCEEEE--------EEEEEESCCCEESTT--SEEEEEECC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC-CCCCCc--------cCCCceeccEEEECC--CEEEEEEec
Confidence 344467889999999999886 3 2 3699999994 443321 011122357899999 445555554
Q ss_pred C--------------eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-----Cc
Q 010801 290 G--------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MN 349 (501)
Q Consensus 290 g--------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-----~~ 349 (501)
+ .|++|++.++.... ..++.. ..+...+..+.|+|||++|+... + ..
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSAD--QPVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGC--EEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred CcccccccccCCCCCEEEEEECCCCchhC--EEEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 3 38889987654221 122222 11223578999999999888653 2 48
Q ss_pred EEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC----CCeEEEEecCCCC-cceEE
Q 010801 350 LKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS-AGGIT 422 (501)
Q Consensus 350 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 422 (501)
|++||+.. + +....+..+.... ... ++|+|+.|+..+. ++.|.+||+.++. .....
T Consensus 296 l~~~d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l 358 (741)
T 1yr2_A 296 VHVARVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV 358 (741)
T ss_dssp EEEEEEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred EEEEECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence 99999975 3 2144554443322 233 4588888887775 3559999998752 33333
Q ss_pred EecccCcccceeeccCCccccCccceeeeecccce-eecccc--CC-ccccc-ccCCCeEEEEEccCCCEEEEee-----
Q 010801 423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GH-HELSY-NLSSKLLHLAWHPTTNLIACAN----- 492 (501)
Q Consensus 423 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~-~~~~~-~~~~~i~~~~~sp~~~~la~~~----- 492 (501)
+..+...+..+.+. ++.+ +++...++. .+|..+ +. ..... .....+..++++|+++.|+...
T Consensus 359 ~~~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 359 VPESKDNLESVGIA---GNRL-----FASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp ECCCSSEEEEEEEE---BTEE-----EEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred ecCCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 44444444444444 4455 777888888 888322 22 22222 2356788899999998776443
Q ss_pred CCeEEEEe
Q 010801 493 GNSLFFHY 500 (501)
Q Consensus 493 ~~~~~i~~ 500 (501)
...+|+|+
T Consensus 431 P~~i~~~d 438 (741)
T 1yr2_A 431 PATVLALD 438 (741)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEE
Confidence 24577775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-10 Score=105.93 Aligned_cols=232 Identities=9% Similarity=0.069 Sum_probs=146.6
Q ss_pred ceEEEEEccCC-CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~~g-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
-.-+..|+|++ .++++...++.|..||..+++. ..+ ...
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~-~~~----------- 53 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----------------------------QRV-TMD----------- 53 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----------------------------EEE-ECS-----------
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEE-eCC-----------
Confidence 34678899955 4556666788999999886642 111 122
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+.++++. ++++++++ . ++.|.+||..+++...+.....
T Consensus 54 -~~~~~i~~~--~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~----------------------------------- 93 (297)
T 3g4e_A 54 -APVSSVALR--QSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN----------------------------------- 93 (297)
T ss_dssp -SCEEEEEEB--TTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT-----------------------------------
T ss_pred -CceEEEEEC--CCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC-----------------------------------
Confidence 568899997 78885444 4 5679999998776543321100
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC---------CeEEEEECCCCCeeeeeeecCCCC
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
......+..+++.|+|+++++. .. ..-.+|.+...+.....
T Consensus 94 ----------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------- 144 (297)
T 3g4e_A 94 ----------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY------- 144 (297)
T ss_dssp ----------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-------
T ss_pred ----------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-------
Confidence 1123457889999999977765 32 33456655533332221
Q ss_pred CCCcccceEEEEEecCCCcEE-EEEeCCCeEEEEEcc--CCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 263 MDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l-~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.........++|+|++ +.| ++.+.++.|.+||+. ++.... .+.+.. +..+......+++.++|
T Consensus 145 -~~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G 210 (297)
T 3g4e_A 145 -FDQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEG 210 (297)
T ss_dssp -EEEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTS
T ss_pred -eeccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCC
Confidence 1223346889999999 655 555668899999973 443211 011111 01123457889999999
Q ss_pred CEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc-CCCcEEEEEeC
Q 010801 340 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 404 (501)
Q Consensus 340 ~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~ 404 (501)
++.++... +.|.+||..+ ++.+..+..+...+ ++++|. |+++.|...+.
T Consensus 211 ~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 211 KLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence 87777644 7899999875 78888877654332 789998 78776655443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-10 Score=104.12 Aligned_cols=256 Identities=10% Similarity=0.068 Sum_probs=150.8
Q ss_pred EEEEccCCCEEEEEe----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC-Ccchh
Q 010801 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (501)
Q Consensus 37 ~v~~s~~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (501)
.++|||||++|+++. .++.|.+||..+.+.. ..+.-- .+.+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---------------------------~~i~~~~~~~~- 121 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF- 121 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---------------------------EEEECCCcccc-
Confidence 899999999999875 3678999998866432 111100 0000
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeee-eccCCCcccccccccccccCccccCCCCCC
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
.....-..++|+ |+|++|+++.. ++.|.++| .+++.... ...
T Consensus 122 -----~~g~~p~~~~~s--pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--------------------------- 166 (373)
T 2mad_H 122 -----DVGPYSWMNANT--PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--------------------------- 166 (373)
T ss_pred -----ccCCCccceEEC--CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---------------------------
Confidence 000123467887 89999998874 57899999 88775443 210
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
.+ ++.+.|+++ .+++. .||.+.++|. ..+.. ......+
T Consensus 167 --------------------------------~~------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~~~~~ 206 (373)
T 2mad_H 167 --------------------------------PT------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GAGLVGA 206 (373)
T ss_pred --------------------------------Cc------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EEEeccc
Confidence 00 133445543 33444 7888999998 44433 2111100
Q ss_pred CCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC
Q 010801 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 340 (501)
...+.........+.+++ ..++..+..+.+.+.|+....... ...+........ . ..-.......+.++||++
T Consensus 207 -~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~-~--~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 207 -MLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRK-A--DTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred -cccCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCccc-c--cceecCceEeEEECCCCC
Confidence 011111112334567776 444444578899999987653211 011111000000 0 000112345578999998
Q ss_pred EEEEEc-----------CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEe-CCCe
Q 010801 341 HLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNL 407 (501)
Q Consensus 341 ~l~~~~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~ 407 (501)
.+.++. .+.|.++|+.+ .+.+.++...... ..++|+|||+ +++++. .++.
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCCeEEEEEcCCCCe
Confidence 777642 15799999986 7777888654433 5899999999 777776 5899
Q ss_pred EEEEecCCCCcc
Q 010801 408 LRIFSHGVGSAG 419 (501)
Q Consensus 408 i~iwd~~~~~~~ 419 (501)
|.++|+.+++.+
T Consensus 343 V~ViD~~t~~vv 354 (373)
T 2mad_H 343 LHIYDAGAGDQD 354 (373)
T ss_pred EEEEECCCCCEE
Confidence 999999988554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-10 Score=107.35 Aligned_cols=269 Identities=10% Similarity=0.038 Sum_probs=159.8
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
.....|+|+++|+++++...++.|++||..+++.. ..... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------~~~~~-~----------- 171 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------TVHPG-F----------- 171 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------EEEET-C-----------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------Eeecc-C-----------
Confidence 56889999999997777777789999998876431 11222 1
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCC--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
.... ++|+ ++++.|+++..++ .|.+|+..++.......
T Consensus 172 -~~~~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g------------------------------------ 211 (409)
T 3hrp_A 172 -KGGK-PAVT--KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG------------------------------------ 211 (409)
T ss_dssp -CBCB-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE------------------------------------
T ss_pred -CCCc-eeEe--cCCCcEEEEecCCCceEEEEEcCCCceeEEee------------------------------------
Confidence 2233 8886 7888888887655 78888876654221110
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.........+.+++++|++..|+.+ .++.|+.||..... . ..+... ...+....
T Consensus 212 ---------------------~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~-~~~~~~--~~~g~~~~ 266 (409)
T 3hrp_A 212 ---------------------QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-V-TLIKQL--ELSGSLGT 266 (409)
T ss_dssp ---------------------ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-E-EEEEEC--CCCSCCCC
T ss_pred ---------------------eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-E-EEEecc--cccCCCCC
Confidence 0001134556788999955555557 88899999998433 2 111000 01112122
Q ss_pred e-E-EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcce--eeecccceeEEEEeeCCCEEEEE
Q 010801 270 I-T-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF--FTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 270 v-~-~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
- . .++|+|++..++++-..++.|+.||.... . ..+.++........- ....-.....++++|+|+++++-
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-----EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred CccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 1 3 89999964277777777899999987643 1 222221100000000 00001347899999999977776
Q ss_pred c-C-CcEEEEEeeCCCCceeEeeccccccccccccC-CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 346 D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 346 ~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
. . +.|+.|++.. +. +..+.++..... ..+.. ..........++++++|.++++-..+++|+.++++
T Consensus 341 ~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g-~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 341 GFKGYCLRKLDILD-GY-VSTVAGQVDVAS-QIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TTTTCEEEEEETTT-TE-EEEEEECTTCBS-CCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCCCCEEEEEECCC-CE-EEEEeCCCCCCC-cCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 5 4 8999999753 43 455544411000 00000 00011123689999999988888889999888753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-09 Score=99.36 Aligned_cols=239 Identities=8% Similarity=0.012 Sum_probs=156.6
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.+++++++|+++++...++.|..|+.. ++. .. ..+....
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-------------------------~~-~~~~~~~---------- 98 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-------------------------KE-YTLPNPD---------- 98 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-------------------------EE-EECSSTT----------
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-------------------------EE-EeCCCcC----------
Confidence 4678999999999988877667889999865 211 00 1111122
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+..+++. +++.++++...++.|..||. +++.....
T Consensus 99 --~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-------------------------------------- 135 (299)
T 2z2n_A 99 --SAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYE-------------------------------------- 135 (299)
T ss_dssp --CCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEE--------------------------------------
T ss_pred --CCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEec--------------------------------------
Confidence 557888886 67877777767889999988 54432211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.......+..+++.++|.++++. .++.|..||.. +. .... ........+
T Consensus 136 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~------~~~~~~~~~ 185 (299)
T 2z2n_A 136 ----------------------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITES-GD-ITEF------KIPTPASGP 185 (299)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEE------ECSSTTCCE
T ss_pred ----------------------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC-Cc-EEEe------eCCCCCCcc
Confidence 02234567889999999888887 78899999983 33 2221 022334567
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~ 349 (501)
.++++++++ +++++...++.|.+||. +++.. .+.. ..+...+.+++++++|++.++. .++.
T Consensus 186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEIT-----EFKI-----------PTPNARPHAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred eeEEECCCC-CEEEEccCCceEEEECC-CCcEE-----EEEC-----------CCCCCCceeEEECCCCCEEEeccCCce
Confidence 899999998 87777667889999998 55421 1211 0123568899999999977766 3489
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|..||.. ++ +..+....... .+.++++ ++++++++.+ .+.|..++.+++
T Consensus 248 i~~~d~~--g~-~~~~~~~~~~~-------------~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 248 IGRLTSN--NI-IEEYPIQIKSA-------------EPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEEETT--TE-EEEEECSSSSC-------------CEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEEECCC--Cc-eEEEeCCCCCC-------------ccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 9999973 43 33332111100 1168888 8888777665 567777777654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-10 Score=104.46 Aligned_cols=306 Identities=9% Similarity=0.017 Sum_probs=177.7
Q ss_pred EEEccCCCEEEEEec-----CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 38 IEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 38 v~~s~~g~~latg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
....|+++.+++... ++.|.+.|..+++. +..+....
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------~~~I~vG~----------- 79 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF----------- 79 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS-----------
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------EEEEECCC-----------
Confidence 455799999888765 67999999887653 24444322
Q ss_pred ccceeEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCC
Q 010801 113 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (501)
.+ . ++++ |+|++++++. .++.|.+||..+++...........
T Consensus 80 -~P-~-va~s--pDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~----------------------- 131 (386)
T 3sjl_D 80 -LP-N-PVVA--DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP----------------------- 131 (386)
T ss_dssp -SC-E-EEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-----------------------
T ss_pred -CC-c-EEEC--CCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc-----------------------
Confidence 33 3 8887 8999888775 3678999999998766544211000
Q ss_pred cccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecC
Q 010801 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMK 259 (501)
Q Consensus 183 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~ 259 (501)
+ .........++|+|||++++++ . ++.|.++|+. ..+.+..+.+
T Consensus 132 ----------------------------r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v- 178 (386)
T 3sjl_D 132 ----------------------------R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDV- 178 (386)
T ss_dssp ----------------------------C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEEC-
T ss_pred ----------------------------c---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEEC-
Confidence 0 0012234568999999998876 3 6899999999 5556555422
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccce-eEEEEe-
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKFA- 336 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~s- 336 (501)
.+ +....|.+.+.+++.+.||.+.+.++.. ++........+.. . ..++ ....|.
T Consensus 179 ----~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~-----~--------~~~~~~~~~~~~ 235 (386)
T 3sjl_D 179 ----PD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----E--------DEFLINHPAYSQ 235 (386)
T ss_dssp ----CS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----T--------TSCBCSCCEEET
T ss_pred ----CC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc-----c--------cccccccceeEc
Confidence 11 1122344436777888899999999876 4432100011110 0 1112 223564
Q ss_pred eCCCEEEEEcCCcEEEEEeeCCC-CceeEeecc------ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-----
Q 010801 337 NDGQHLLSRDYMNLKLWDIRMDS-TPVATFKIH------EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----- 404 (501)
Q Consensus 337 p~~~~l~~~~~~~i~lwd~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----- 404 (501)
++|+++....++.|++.|+.... +.+..+... ....+. +...++++++++.|.....
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~-----------g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG-----------GWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC-----------SSSCEEEETTTTEEEEEEEECCTT
T ss_pred CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCC-----------CcceeeECCCCCeEEEEecccccc
Confidence 68877766656999999986411 122222200 000000 0024888999888777643
Q ss_pred -----CCeEEEEecCCCCcceEEEecccCcccceeeccCCccc-cCccceeeeecccce-eeccccC-CcccccccCCCe
Q 010801 405 -----SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR-RSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKL 476 (501)
Q Consensus 405 -----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~iw~~~~-~~~~~~~~~~~i 476 (501)
.+.|.+.|+.+++.+ ..+..- ..++.+++++ +++ . .+++...++. .+++... ...........-
T Consensus 305 ~hk~~~~~V~viD~~t~kv~-~~i~vg-~~~~~lavs~--D~~~~----ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERL-AKFEMG-HEIDSINVSQ--DEKPL----LYALSTGDKTLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEE-EEEEEE-EEECEEEECS--SSSCE----EEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred ccCCCCCEEEEEECCCCeEE-EEEECC-CCcceEEECC--CCCeE----EEEEcCCCCeEEEEECCCCcEEEEecCCCCC
Confidence 257999999998555 444332 2677899998 444 3 0343444555 6663331 222222222333
Q ss_pred EEEEEccC
Q 010801 477 LHLAWHPT 484 (501)
Q Consensus 477 ~~~~~sp~ 484 (501)
+.|.+++|
T Consensus 377 ~~l~~s~d 384 (386)
T 3sjl_D 377 PQVITTAD 384 (386)
T ss_dssp CCEEEECC
T ss_pred ceeEECCc
Confidence 45556655
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=104.93 Aligned_cols=235 Identities=9% Similarity=0.000 Sum_probs=149.8
Q ss_pred ccccceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 30 QDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..........|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~----------------------------~~~~~~~------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV----------------------------DVLLDAT------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE----------------------------EEEEESC-------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE----------------------------EEEeCCC-------
Confidence 3456678899999998 55666678899999873 321 2233333
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..+..+++. ++|+++++...++.|.+|+.. ++.......
T Consensus 86 -----~~~~gl~~d--~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~--------------------------------- 124 (305)
T 3dr2_A 86 -----AFTNGNAVD--AQQRLVHCEHGRRAITRSDAD-GQAHLLVGR--------------------------------- 124 (305)
T ss_dssp -----SCEEEEEEC--TTSCEEEEETTTTEEEEECTT-SCEEEEECE---------------------------------
T ss_pred -----CccceeeEC--CCCCEEEEECCCCEEEEECCC-CCEEEEEec---------------------------------
Confidence 558889996 788866655566889999876 543322100
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE----E-c-------------CCeEEEEECCCCC
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISD 250 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~ 250 (501)
........+..+++.++|+++++ | . .+.|..+|.. .+
T Consensus 125 ------------------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g 179 (305)
T 3dr2_A 125 ------------------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GS 179 (305)
T ss_dssp ------------------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SC
T ss_pred ------------------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CC
Confidence 00111234667899999998886 3 2 2456666665 23
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC------CeEEEEEccCCcccccccceeecccccCCCcceee
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
+.... . .......++|+|++ +.|+++... +.|.+||+..+.+. ..+.+..
T Consensus 180 ~~~~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~--~~~~~~~------------ 235 (305)
T 3dr2_A 180 PLQRM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALH--DRRHFAS------------ 235 (305)
T ss_dssp CCEEE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEE--EEEEEEC------------
T ss_pred cEEEE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCcc--CCeEEEE------------
Confidence 32221 1 22345789999999 877776665 78999998765311 0112211
Q ss_pred ecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 325 ~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
........+++.++|++.++. .+.|.+|+.. ++.+..+..+... .+++|+++++.|..++.
T Consensus 236 ~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 236 VPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFITGG 296 (305)
T ss_dssp CSSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEEET
T ss_pred CCCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEEcC
Confidence 012345678999999965554 4559999874 7777777655432 58999999988888777
Q ss_pred CCeEE
Q 010801 405 SNLLR 409 (501)
Q Consensus 405 dg~i~ 409 (501)
++..+
T Consensus 297 ~~l~~ 301 (305)
T 3dr2_A 297 PCLWM 301 (305)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 65433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-09 Score=98.86 Aligned_cols=253 Identities=9% Similarity=-0.058 Sum_probs=142.8
Q ss_pred EEccCCCEEEEEec--CC---cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 39 ~~s~~g~~latg~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
...|+++++.+... .. +|.++|..+++. ...+....
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g~------------ 67 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF------------ 67 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE---------------------------EEEecCCC------------
Confidence 44578888877653 22 789999887653 23333222
Q ss_pred cceeEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
.+ .++++ ||+++++++. .++.|.+||..+.+..........
T Consensus 68 ~p--~i~~s--pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~------------------------- 118 (373)
T 2mad_H 68 LP--NPVAA--HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA------------------------- 118 (373)
T ss_pred CC--CeEEC--CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc-------------------------
Confidence 22 78897 8999988885 367899999987765543311100
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeee-eecC
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMK 259 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~ 259 (501)
.. ..+......++|+|||++|+++ . ++.|.++| . .++.... +.
T Consensus 119 ---------------------------~~--~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~-- 165 (373)
T 2mad_H 119 ---------------------------PR--FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLS-- 165 (373)
T ss_pred ---------------------------cc--cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcC--
Confidence 00 0011234578999999999886 3 58899999 7 4444443 21
Q ss_pred CCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 260 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
.. .++.+.|++.+.+++.+.||.+.++|. +++... .... . + .+.+.........+.+++
T Consensus 166 ---~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~----~~~~-~--~----~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 166 ---SP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG----AGLV-G--A----MLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ---CC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE----EEec-c--c----cccCCcceeecceeEecC
Confidence 11 124566776567778888999999999 765331 1100 0 0 000000112335566765
Q ss_pred CEE-EEEcCCcEEEEEeeCCC-CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC----------CCe
Q 010801 340 QHL-LSRDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNL 407 (501)
Q Consensus 340 ~~l-~~~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----------dg~ 407 (501)
..+ +....+.+.+.|+.... +.+..+......... ..........+.++|+++.|..... ++.
T Consensus 225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~-----~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA-----DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc-----cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 543 34444889999986411 122222211100000 0000000134788999887776543 357
Q ss_pred EEEEecCCCCc
Q 010801 408 LRIFSHGVGSA 418 (501)
Q Consensus 408 i~iwd~~~~~~ 418 (501)
|.++|+.+++.
T Consensus 300 V~VID~~t~~v 310 (373)
T 2mad_H 300 VTSVTGLVGQT 310 (373)
T ss_pred EEEEECCCCEE
Confidence 99999987733
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=112.28 Aligned_cols=192 Identities=8% Similarity=0.046 Sum_probs=125.7
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
..++.+++++...++|+|+.++ ++||+++..+. .+... ..+.... ....+.
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~---------~~~~~-------~~~~~~~-~~~~lp----------- 88 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRD---------HITSD-------STPLTFK-WEKEIP----------- 88 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH---------HHHSS-------SCCCCCS-EEEECT-----------
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhh---------hhccc-------cccccce-EEeeCC-----------
Confidence 4799999999999999999874 66799774321 00000 0001110 111233
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
. |+.|+| ++.+|+++ .++.|++||+.+.......
T Consensus 89 -~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~--------------------------------------- 122 (388)
T 1xip_A 89 -D-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTV--------------------------------------- 122 (388)
T ss_dssp -T-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEE---------------------------------------
T ss_pred -C-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCcc---------------------------------------
Confidence 6 999999 57788888 8899999999875522211
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceE
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (501)
..|...+.++.+.+.. ++++ .||.|.+||+... .... +...|+
T Consensus 123 ----------------------~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~-~~~~-----------~~~~Vs 166 (388)
T 1xip_A 123 ----------------------TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTK-STKQ-----------LAQNVT 166 (388)
T ss_dssp ----------------------EECSSCEEEEEECSSE--EEEEETTSEEEEEETTTC-CEEE-----------EEESEE
T ss_pred ----------------------ceeecceeeEEecCCC--EEEEECCCCEEEEEccCC-cccc-----------ccCCce
Confidence 2334456676665442 6666 9999999999833 3222 345799
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
+++|+|+| ++.|..||.+++|+........ .+.+.. + +... ...+|...|.++.|.++++++++
T Consensus 167 ~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~~-P--p~~~-~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 167 SFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFSL-P--SELE-ELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEECC-C--HHHH-TSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceecC-C--cccc-cccCCCeeEEEEEEecCCeEEEE
Confidence 99999998 6789999999999887764210 022211 0 0000 00125678999999999999986
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-09 Score=96.54 Aligned_cols=179 Identities=7% Similarity=0.059 Sum_probs=112.2
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC---------
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------- 289 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------- 289 (501)
..+.+++++++|+++++. ++.|.+||.+ .++...+.... .......+..++++|+| +++++...+
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~-~g~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWK-EQSAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETT-TTEEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECC-CCcEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecCCcccccccccC
Confidence 468889999999955544 5689999988 34333221111 11123457899999999 766654322
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEEEEEee-CCCCce----
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIR-MDSTPV---- 362 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~lwd~~-~~~~~~---- 362 (501)
..-.+|.+....... ..... ....+.++|+||++.|..+ + .+.|.+|++. ..+...
T Consensus 128 ~~~~l~~~d~~g~~~---~~~~~--------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~ 190 (297)
T 3g4e_A 128 HQGALYSLFPDHHVK---KYFDQ--------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS 190 (297)
T ss_dssp TCEEEEEECTTSCEE---EEEEE--------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE
T ss_pred CCcEEEEEECCCCEE---EEeec--------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE
Confidence 223455443221110 11111 2346789999999977654 3 3899999984 223321
Q ss_pred -eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 363 -ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 363 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
..+...... ...++++++|++.++...++.|..||.++++ ....+..+...+.+++|.
T Consensus 191 ~~~~~~~~~~---------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~-~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 191 VYKLEKEEQI---------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGK-RLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEECCGGGCE---------------EEEEEEBTTSCEEEEEETTTEEEEECTTTCC-EEEEEECSSSBEEEEEEE
T ss_pred EEECCCCCCC---------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCce-EEEEEECCCCCceEEEEe
Confidence 111111111 1579999999988888888999999998874 446677666677888887
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-10 Score=117.03 Aligned_cols=160 Identities=11% Similarity=0.011 Sum_probs=95.6
Q ss_pred cccceEEEEecCCCCEEEEE--c---CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC--
Q 010801 217 HDFNINSISNNSDCETFVSA--D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-- 289 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-- 289 (501)
|...+.++.|+|||++|+.. . .+.|+++|+......... +..+....... +++++..+++....+
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAP 303 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCC
Confidence 44457789999999988653 2 358999998754322222 22333444444 666663555555443
Q ss_pred -CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C--CcEEEEEeeCCCCceeE
Q 010801 290 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 290 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~--~~i~lwd~~~~~~~~~~ 364 (501)
+.|..+|+.++... ..+.+.. |...+. .|++++++|+... + ..|++||+. +.....
T Consensus 304 ~~~l~~~d~~~~~~~--~~~~l~~-------------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~ 364 (693)
T 3iuj_A 304 NRRLVTVDAANPGPA--HWRDLIP-------------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVRE 364 (693)
T ss_dssp TCEEEEEETTSCCGG--GCEEEEC-------------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEE
T ss_pred CCEEEEEeCCCCCcc--ccEEEec-------------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEE
Confidence 67899998876421 0112222 223343 8999999887653 3 368888875 444444
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC----CeEEEEecCCCC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS 417 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 417 (501)
+...... .+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 365 l~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 365 VALPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECCSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eecCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4322111 01456777887766655444 789999998764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-09 Score=99.48 Aligned_cols=231 Identities=11% Similarity=0.006 Sum_probs=143.6
Q ss_pred ccceEEEEecCCCC-EEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 218 DFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 218 ~~~v~~l~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
........|+|+++ +++++ .++.|..|+.. +.. .. +..+...+..++++++| +++++...++.|.+|
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~~-------~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--DV-------LLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRS 112 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--EE-------EEESCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--EE-------EeCCCCccceeeECCCC-CEEEEECCCCEEEEE
Confidence 44567889999998 55667 88999999885 332 22 22244568899999998 877666667889999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE----Ec--------------CCcEEEEEeeC
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD--------------YMNLKLWDIRM 357 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~----~~--------------~~~i~lwd~~~ 357 (501)
|.. ++. ..+..... . .....+..++++|+|++.++ |. .+.|+.||..+
T Consensus 113 ~~~-g~~-----~~~~~~~~--~------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 113 DAD-GQA-----HLLVGRYA--G------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp CTT-SCE-----EEEECEET--T------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred CCC-CCE-----EEEEeccC--C------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 975 432 11111000 0 01135778999999998886 32 13466666543
Q ss_pred CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC------CeEEEEecCCCCcce--EEE-ecccC
Q 010801 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGG--ITV-EAGKN 428 (501)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~-~~~~~ 428 (501)
++... +...... ..++|+||++.|+.+... +.|++|++..+. +. ..+ .....
T Consensus 179 -g~~~~-~~~~~~p----------------~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 179 -SPLQR-MADLDHP----------------NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDG 239 (305)
T ss_dssp -CCCEE-EEEESSE----------------EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSS
T ss_pred -CcEEE-EecCCCC----------------cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCC
Confidence 44332 2211111 589999999987776654 789999987653 21 111 11223
Q ss_pred cccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 429 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
....+++.+ +|.+ .++. .++..+|+..+...........+..++|+|+++.|.+++.++++.++
T Consensus 240 ~pdgi~~d~--~G~l-----wv~~-~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDR--GGWL-----WSSS-GTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp CCCSEEECT--TSCE-----EECC-SSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCeEEECC--CCCE-----EEec-CCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 334555555 4544 3333 34446675554433333333468899999999999999989988765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-10 Score=106.97 Aligned_cols=193 Identities=8% Similarity=0.046 Sum_probs=123.9
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..++.++++ +...++++|+.++ +++|++.+.+-.... . .
T Consensus 38 ~~~nlLais--~~~gll~a~~~~~-l~v~~~~~l~~~~~~--~------------------------------------~ 76 (388)
T 1xip_A 38 ASLQNLDIS--NSKSLFVAASGSK-AVVGELQLLRDHITS--D------------------------------------S 76 (388)
T ss_dssp SCCBCEEEE--TTTTEEEEEETTE-EEEEEHHHHHHHHHS--S------------------------------------S
T ss_pred ccccEEEEc--CCCCEEEEeCCCE-EEEEEhhHhhhhhcc--c------------------------------------c
Confidence 468999998 6778899998875 666998765410000 0 0
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
+. .+.... ..+.. |+.++| ++..|+++.++.|++||+....+... ...|...+.++
T Consensus 77 ~~-----------~~~~~~--~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~--------~~~~~~~v~~i 132 (388)
T 1xip_A 77 TP-----------LTFKWE--KEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRT--------VTSFEKPVFQL 132 (388)
T ss_dssp CC-----------CCCSEE--EECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEE--------EEECSSCEEEE
T ss_pred cc-----------ccceEE--eeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCc--------cceeecceeeE
Confidence 00 000000 23445 999999 88999999889999999985443222 23455667777
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
.+.+. + +++++.||.|.+||+.++... . +...|++++|+|+| ..+...||.+++|
T Consensus 133 ~~~~p--~-~av~~~dG~L~v~dl~~~~~~----~-----------------~~~~Vs~v~WSpkG-~~vg~~dg~i~~~ 187 (388)
T 1xip_A 133 KNVNN--T-LVILNSVNDLSALDLRTKSTK----Q-----------------LAQNVTSFDVTNSQ-LAVLLKDRSFQSF 187 (388)
T ss_dssp EECSS--E-EEEEETTSEEEEEETTTCCEE----E-----------------EEESEEEEEECSSE-EEEEETTSCEEEE
T ss_pred EecCC--C-EEEEECCCCEEEEEccCCccc----c-----------------ccCCceEEEEcCCc-eEEEEcCCcEEEE
Confidence 76653 3 888899999999999876532 1 12479999999999 3334457999999
Q ss_pred EeeCCCCc--eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 354 DIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 354 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
+... ... ..++........ ++. .-..+.++.|.+++.++++-.
T Consensus 188 ~~~~-~~~~~k~~I~~Pp~~~~---~~~---~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 188 AWRN-GEMEKQFEFSLPSELEE---LPV---EEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEET-TEEEEEEEECCCHHHHT---SCT---TTSEEEEEEESSSSEEEEEEE
T ss_pred cCCC-ccccccceecCCccccc---ccC---CCeeEEEEEEecCCeEEEEEc
Confidence 8874 332 445521110000 000 012237999999999998744
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-09 Score=99.11 Aligned_cols=261 Identities=11% Similarity=0.076 Sum_probs=147.9
Q ss_pred EEEEccCCCEEEEEe----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 37 ~v~~s~~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.++++|||++|+++. .++.|.+||..+++.. ..+.-...
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------------------~~I~v~~g---- 130 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDA---- 130 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTC----
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------------------EEEECCCc----
Confidence 399999999988765 3678999999877542 22210000
Q ss_pred ccccccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
+.......-..++|+ |||++++++.. ++.|.++|+.+++........
T Consensus 131 -~r~~~g~~P~~~a~s--pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---------------------------- 179 (386)
T 3sjl_D 131 -PRFLVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---------------------------- 179 (386)
T ss_dssp -CCCCBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----------------------------
T ss_pred -cccccCCCCceEEEc--CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----------------------------
Confidence 000000234568887 89999888863 689999999998876654211
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
+. ...+....+.+++. .||.+.+.++...+...... .+ .+
T Consensus 180 -------------------------------g~-----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~--~~ 220 (386)
T 3sjl_D 180 -------------------------------DC-----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TE--VF 220 (386)
T ss_dssp -------------------------------SE-----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CC--CC
T ss_pred -------------------------------Cc-----ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cc--ee
Confidence 00 01111122233332 45555555554222221100 00 01
Q ss_pred CCcccceE-EEEEe-cCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccc--ccCCCcceeeecccceeEEEEeeCC
Q 010801 264 DDLTEVIT-SAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--ESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 264 ~~~~~~v~-~v~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
..-...+. ...|. ++| ++++ .+.+|.|.+.|+.+...... ..+.... ..... -.......++++|++
T Consensus 221 ~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~--~~~~~~~~~~~~~g-----~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 221 HPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFL--PAVEALTEAERADG-----WRPGGWQQVAYHRAL 291 (386)
T ss_dssp SCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEEC--CCEESSCHHHHHTT-----EEECSSSCEEEETTT
T ss_pred ccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceee--cceecccccccccc-----ccCCCcceeeECCCC
Confidence 11111111 23564 666 5444 66689999999976542110 1111000 00000 012345568889998
Q ss_pred CEEEEEc-----------CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEE-eCCC
Q 010801 340 QHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSN 406 (501)
Q Consensus 340 ~~l~~~~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~-~~dg 406 (501)
+.+.... .+.|.++|+.+ .+.+.++...... .++++++|++ +|++. ..++
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSSSSCEEEEEETTTT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCeEEEEEcCCCC
Confidence 8877642 15799999987 8888887755433 5899999997 66654 5589
Q ss_pred eEEEEecCCCCcceEEEec
Q 010801 407 LLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~ 425 (501)
.|.++|..+++. ..+++.
T Consensus 355 ~VsViD~~t~k~-~~~i~~ 372 (386)
T 3sjl_D 355 TLYIHDAESGEE-LRSVNQ 372 (386)
T ss_dssp EEEEEETTTCCE-EEEECC
T ss_pred eEEEEECCCCcE-EEEecC
Confidence 999999999854 355543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.3e-10 Score=102.63 Aligned_cols=275 Identities=6% Similarity=-0.023 Sum_probs=159.5
Q ss_pred cceEEEEEccCCCEEEEEe--cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
..+..++++|+|+++++.. .++.++||.+.+++.. ..|... ....+|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-------------------~~p~~~--~~~~~~~--------- 66 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-------------------PFPPQS--GNAIITF--------- 66 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-------------------ESCCCC--SSCCCCC---------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-------------------cCCCcc--cCcccce---------
Confidence 5789999999999888864 2343666766544321 000000 0112233
Q ss_pred ccccceeEEEEeecCCCCEEEEeeC-----CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l~s~s~-----d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..+..|++. ++++++++-.. ++.|.+||+.+++...........
T Consensus 67 ---~~p~gv~~d--~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-------------------------- 115 (343)
T 2qe8_A 67 ---DTVLGIKSD--GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-------------------------- 115 (343)
T ss_dssp ---SCEEEEEEC--SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT--------------------------
T ss_pred ---eEeeEEEEc--CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh--------------------------
Confidence 678999996 67766655433 578999999888755443221000
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c----CCeEEEEECCCCCeeeeeeecCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
..+...+..+++++++..+..+ . ++.|.+||+. .++..+.
T Consensus 116 -----------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~----- 160 (343)
T 2qe8_A 116 -----------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARV----- 160 (343)
T ss_dssp -----------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEE-----
T ss_pred -----------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEE-----
Confidence 1223456788998865555444 3 6899999998 4444443
Q ss_pred CCCCCcccceE-EEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC
Q 010801 261 SNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (501)
Q Consensus 261 ~~~~~~~~~v~-~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 339 (501)
+.+|..... ...+.++| ..+.+.+.++.++.|. ..+..++|+|||
T Consensus 161 --~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~-------------------------------~~~~gia~s~dg 206 (343)
T 2qe8_A 161 --LQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH-------------------------------LGVNGIVLDAEN 206 (343)
T ss_dssp --CTTCTTTSCCSCCCEETT-EECBEECTTSCEECCC-------------------------------CCEEEEEECTTS
T ss_pred --ecCCCcccccccceeECC-EEEEeccCCCceecee-------------------------------cccceeEeccCC
Confidence 222211100 13455677 7777777777765442 135789999999
Q ss_pred CEEEEEcC--CcEEEEEeeC--CCCc-----ee--EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 340 QHLLSRDY--MNLKLWDIRM--DSTP-----VA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 340 ~~l~~~~~--~~i~lwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
+.|+.++. ..++.++... .... .. ...++.... ..++++++|.++++...++.|
T Consensus 207 ~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p---------------dgia~d~~G~l~va~~~~~~V 271 (343)
T 2qe8_A 207 EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC---------------DGISIDKDHNIYVGDLAHSAI 271 (343)
T ss_dssp CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC---------------SCEEECTTCCEEEEEGGGTEE
T ss_pred CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC---------------ceEEECCCCCEEEEccCCCeE
Confidence 98887643 4444444321 0100 00 111111111 479999999999999999999
Q ss_pred EEEecCCCCcceEEEec-ccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 409 RIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
.+||.++++ ....... +......+++.+ ++++ +++.+..+. .+|
T Consensus 272 ~~~d~~~G~-~~~~~~~~~~~~p~~va~~~--~g~l-----~v~~~~~~~~~~f 317 (343)
T 2qe8_A 272 GVITSADRA-YKLLVTDEKLSWTDSFNFGS--DGYL-----YFDCNQLHHSAPL 317 (343)
T ss_dssp EEEETTTTE-EEEEEECGGGSCEEEEEECT--TSCE-----EEEECCGGGSGGG
T ss_pred EEEECCCCC-EEEEEECCceecCCeeEECC--CCcE-----EEEeCcccccccc
Confidence 999985553 2222221 234566777776 4555 555554433 444
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-09 Score=97.01 Aligned_cols=228 Identities=11% Similarity=0.026 Sum_probs=140.9
Q ss_pred ceEEEEEccCCC-EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 34 IVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 34 ~v~~v~~s~~g~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
-.....|+|++. ++++...++.|.+||..+++. ..+. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~----------- 89 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP----------- 89 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS-----------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEE-CC-----------
Confidence 356789999754 555666788999999876632 1111 12
Q ss_pred ccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
..+.+++|. ++++++++. .+ .|.+||..+++.........
T Consensus 90 -~~v~~i~~~--~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~----------------------------------- 129 (326)
T 2ghs_A 90 -FMGSALAKI--SDSKQLIAS-DD-GLFLRDTATGVLTLHAELES----------------------------------- 129 (326)
T ss_dssp -SCEEEEEEE--ETTEEEEEE-TT-EEEEEETTTCCEEEEECSST-----------------------------------
T ss_pred -CcceEEEEe--CCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCC-----------------------------------
Confidence 558899997 677766654 44 48999988776543321000
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cC------CeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
......+.+++++|+|+++++. .+ +.|..++ .++.... ..
T Consensus 130 ----------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~~~~~--------~~ 176 (326)
T 2ghs_A 130 ----------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGKVTKL--------FA 176 (326)
T ss_dssp ----------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTEEEEE--------EE
T ss_pred ----------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCcEEEe--------eC
Confidence 0112467889999999877765 32 3455555 3333221 11
Q ss_pred cccceEEEEEecCCCcEEEEE-eCCCeEEEEEcc--CC-cccccccceeecccccCCCcceeeecccceeEEEEeeCCCE
Q 010801 266 LTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~wd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 341 (501)
.......++|+|++ +.|+.+ +.++.|.+||+. ++ .... .+.+.. +.........+++.++|.+
T Consensus 177 ~~~~~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~----------~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 177 DISIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGK--AEVFID----------STGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp EESSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEE----------CTTSSSEEEEEEECTTSCE
T ss_pred CCcccCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccC--ceEEEE----------CCCCCCCCCeeEECCCCCE
Confidence 22346789999998 765544 557899999986 44 3211 012211 0001234678999999987
Q ss_pred EEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc-CCCcEEEEEeC
Q 010801 342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 404 (501)
Q Consensus 342 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~ 404 (501)
.++.. .+.|.+||.. ++.+..+..+...+ ++++|+ ++++.|+.++.
T Consensus 244 wva~~~~~~v~~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 244 WNARWGEGAVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEETTTEEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEB
T ss_pred EEEEeCCCEEEEECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEec
Confidence 77664 4889999973 66666665444322 689998 88776655443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-09 Score=96.66 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=95.5
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC------CCeE
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS------RGFV 292 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~------dg~i 292 (501)
..+.+++++++|+++++..+ .|.+||..+ +......... .......+.+++++|+| +++++... .+.|
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~-g~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTAT-GVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTT-CCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCC-CcEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEE
Confidence 46888999999987776644 499999873 3332221100 01123468899999999 76665432 2455
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEEEEEee-CCC-Cce--eEee
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIR-MDS-TPV--ATFK 366 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~lwd~~-~~~-~~~--~~~~ 366 (501)
..+| +++.. ..... ......++|+||++.|+.+ + .+.|.+||+. ..+ ... ..+.
T Consensus 164 ~~~~--~g~~~----~~~~~--------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~ 223 (326)
T 2ghs_A 164 YHVA--KGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI 223 (326)
T ss_dssp EEEE--TTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred EEEe--CCcEE----EeeCC--------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE
Confidence 5555 33221 11111 2346789999999877655 3 3899999985 113 211 1121
Q ss_pred c---cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 367 I---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 367 ~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
. .... ...++++++|.++++...++.|.+|+..
T Consensus 224 ~~~~~~~~---------------p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 224 DSTGIKGG---------------MDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp ECTTSSSE---------------EEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred ECCCCCCC---------------CCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 1 1111 1579999999988877777899999983
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-08 Score=92.57 Aligned_cols=237 Identities=8% Similarity=-0.021 Sum_probs=153.8
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
...+.+++++++|++.++...++.|.+||.. ++.. . ..+....
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-------------------------~-~~~~~~~---------- 103 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-------------------------E-YPLPQPD---------- 103 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-------------------------E-ecCCCCC----------
Confidence 3678999999999977776667889999876 4220 0 1111122
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
..+..+++. +++.++++...++.|..++.. ++.....
T Consensus 104 --~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-------------------------------------- 140 (300)
T 2qc5_A 104 --SGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYD-------------------------------------- 140 (300)
T ss_dssp --CCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEE--------------------------------------
T ss_pred --CCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEcc--------------------------------------
Confidence 457888886 678777777667889999876 5433211
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.......+..+++.++++++++. .++.|..+|.. +. .... . .......+
T Consensus 141 ----------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~-----~~~~~~~~ 190 (300)
T 2qc5_A 141 ----------------------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY-P-----LPTNAAAP 190 (300)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE-E-----CSSTTCCE
T ss_pred ----------------------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe-e-----CCCCCCCc
Confidence 02233467889999999977777 68899999984 33 2221 1 23344568
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
..+++++++ +++++....+.|.+||. +++.. .+.. ..+...+.+++++++|++.++.. .+.
T Consensus 191 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 252 (300)
T 2qc5_A 191 VGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS-----EYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQ 252 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred ceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE-----EEEC-----------CCCCCCceEEEECCCCCEEEeccCCCe
Confidence 899999998 87777767788999998 43321 1111 01124578999999998766664 489
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|..||.. ++. ..+....... . +.+++++++|+++++.. . .|..++.+
T Consensus 253 i~~~~~~--g~~-~~~~~~~~~~----------~---~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 253 IGRITND--NTI-QEYQLQTENA----------E---PHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEECTT--SCE-EEEECCSTTC----------C---CCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEEECCC--CcE-EEEECCccCC----------c---cceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 9999873 432 2332211100 1 15899999998766655 4 67666653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.8e-09 Score=97.39 Aligned_cols=297 Identities=9% Similarity=0.048 Sum_probs=176.3
Q ss_pred cCCCEEEEEecC-----CcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 42 KTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 42 ~~g~~latg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
++++++++.... +.|.++|..+++. +..+..-. .+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v---------------------------v~~I~vG~------------~P- 121 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI---------------------------LGMTDGGF------------LP- 121 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE---------------------------EEEEEECS------------SC-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE---------------------------EEEEECCC------------CC-
Confidence 577777666542 6999999987754 23443222 33
Q ss_pred eEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
.++++ ||+++++++. .++.|.++|..+++........... .......+..+.++++..+++
T Consensus 122 -gia~S--pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~------r~~~g~~P~~~~~spDGk~ly 192 (426)
T 3c75_H 122 -HPVAA--EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP------RFLVGTYQWMNALTPDNKNLL 192 (426)
T ss_dssp -EEEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGSEECTTSSEEE
T ss_pred -ceEEC--CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc------ccccCCCcceEEEcCCCCEEE
Confidence 78887 8898888875 4678999999998877654321000 000012345666778888887
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.......+.+.+.|.........+. .+.. ....|++ ..+++. .||.+.+.+.. ..+...... ..+.
T Consensus 193 V~n~~~~~~VsVID~~t~kvv~~I~---v~g~-----~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~~---~~~~ 260 (426)
T 3c75_H 193 FYQFSPAPAVGVVDLEGKTFDRMLD---VPDC-----YHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTNT---EVFH 260 (426)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEE---CCSE-----EEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEEC---CCCS
T ss_pred EEecCCCCeEEEEECCCCeEEEEEE---cCCc-----eeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEee---eeec
Confidence 7765556789999988754332222 1111 1223333 333333 66777766764 333321110 0011
Q ss_pred Ccccc-eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEV-ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~-v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
....+ ...+.+.+++ ..++..+..+.|.+.|+........ ..+.. .. ..... ..........++++|+++.+.
T Consensus 261 v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~--~~~~~-~~-~~~i~-~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 261 TEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFR--APIEA-LT-EAERA-DDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp CTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEEC--CCEES-SC-TTTGG-GTEEECSSSCEEEEGGGTEEE
T ss_pred cCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEe--eeeee-cc-ccccc-cccccCCceeeEEcCCCCEEE
Confidence 11111 1235678888 6666667889999999976542110 11110 00 00000 000012234578999988776
Q ss_pred EEc-----------CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEe-CCCeEEE
Q 010801 344 SRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRI 410 (501)
Q Consensus 344 ~~~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~i 410 (501)
+.. .+.|.++|+.+ .+.+.++.....+ ..++|+|||+ ++++.. .++.|.+
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEEEETTTTEEEE
T ss_pred EEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEEEEEEcCCCCeEEE
Confidence 542 24799999987 8888888755543 5899999999 888877 5999999
Q ss_pred EecCCCCcceEEE
Q 010801 411 FSHGVGSAGGITV 423 (501)
Q Consensus 411 wd~~~~~~~~~~~ 423 (501)
+|+.+++.+ .++
T Consensus 398 ID~~t~kvv-~tI 409 (426)
T 3c75_H 398 YDAATGEEL-RSV 409 (426)
T ss_dssp EETTTCCEE-EEE
T ss_pred EECCCCCEE-EEe
Confidence 999998544 444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-08 Score=96.68 Aligned_cols=215 Identities=11% Similarity=0.076 Sum_probs=129.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.....|+|. ++++++++...++.|++||..++......
T Consensus 131 ~~P~~la~d--~~g~lyv~d~~~~~I~~id~~~g~~~~~~---------------------------------------- 168 (409)
T 3hrp_A 131 KYMWGIAAV--GNNTVLAYQRDDPRVRLISVDDNKVTTVH---------------------------------------- 168 (409)
T ss_dssp CCEEEEEEC--STTEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------------
T ss_pred CCceEEEEe--CCCCEEEEecCCCcEEEEECCCCEEEEee----------------------------------------
Confidence 356788886 77777777677789999999877654432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCC--eEEEEECCCCCeeeeeeecCCCCC-CCcccc
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNM-DDLTEV 269 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~ 269 (501)
.. ..... ++|+++++.|+++ .++ .|.+++...... ...+. .+ ......
T Consensus 169 ---------------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~~~g----~~~~~~~~~ 220 (409)
T 3hrp_A 169 ---------------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PTRIG----QLGSTFSGK 220 (409)
T ss_dssp ---------------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EEEEE----ECCTTSCSC
T ss_pred ---------------------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-eEEee----eccchhcCC
Confidence 11 11223 8899999988887 544 788888873332 22110 01 113456
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc--eeEEEEeeCCCEEE-EEc
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQHLL-SRD 346 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~sp~~~~l~-~~~ 346 (501)
+.+++++|++ ..|+++..++.|+.||..++.. ..+.. ... .++... ...++|+|++..|. +-.
T Consensus 221 p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~-----~~~~~-~~~-------~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 221 IGAVALDETE-EWLYFVDSNKNFGRFNVKTQEV-----TLIKQ-LEL-------SGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp CCBCEECTTS-SEEEEECTTCEEEEEETTTCCE-----EEEEE-CCC-------CSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred cEEEEEeCCC-CeEEEEECCCcEEEEECCCCCE-----EEEec-ccc-------cCCCCCCccccEEEeCCCCEEEEEeC
Confidence 6889999954 4455577789999999987642 22211 000 001111 23999999644444 444
Q ss_pred C-CcEEEEEeeCCCCceeEeeccccccccccc-cCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecCCC
Q 010801 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD-LYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 416 (501)
Q Consensus 347 ~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~ 416 (501)
. +.|+.|+.. +. +..+.++..... ..+ ............++++++|+++++-+ .++.|+.|++.++
T Consensus 287 ~~~~I~~~~~~--g~-~~~~~g~~~~~g-~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 287 NLSSVYKITPD--GE-CEWFCGSATQKT-VQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp TTTEEEEECTT--CC-EEEEEECTTCCS-CBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred CCCEEEEEecC--CC-EEEEEeCCCCCC-cCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 3 889999875 33 344443320000 000 00000011126899999999888888 8999999998766
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-08 Score=91.46 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=96.0
Q ss_pred EEEecCCCCEEEEEc--------------------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE--ecCCC
Q 010801 223 SISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYC 280 (501)
Q Consensus 223 ~l~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~ 280 (501)
.+.|+|+++.+++++ +.+|.+||+.+ ++....+.+ .........+.| +|++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~v-----g~~g~~P~~i~f~~~Pdg- 264 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTL-----GEENRMALELRPLHDPTK- 264 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEES-----CTTEEEEEEEEECSSTTC-
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEec-----CCCCCccceeEeeECCCC-
Confidence 577899999888873 78999999994 555555432 112233456666 9999
Q ss_pred cEEEEEe------CCCeEEEEEccCCcccccccceeecccccCCCc------ceeeecccceeEEEEeeCCCEEEEEc--
Q 010801 281 NLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGSK------SFFTEIIASISDIKFANDGQHLLSRD-- 346 (501)
Q Consensus 281 ~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~i~~~~~sp~~~~l~~~~-- 346 (501)
+++++++ .+++|.+|....+... ..+++.. ...+... ..+.+-......+.++|||++|.++.
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi-~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg 341 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEI-PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG 341 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEE-CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeC-CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence 6665555 5678888776654321 1122211 0000000 00011124578999999999998774
Q ss_pred CCcEEEEEeeCCC--CceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 347 YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 347 ~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
.+.|.+||+.... +.+..+...... ..............-..++++|||++|+++.
T Consensus 342 ~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 342 IGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 3999999986322 333444322100 0000000000000015799999999999887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-08 Score=92.73 Aligned_cols=222 Identities=10% Similarity=0.015 Sum_probs=132.5
Q ss_pred CcccceEEEEecCCCCEEEEE-c-----CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe--
Q 010801 216 AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-- 287 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-- 287 (501)
.+...+..+++.++++++++. . +..|.+||+. .++....+.+.. ....+...+..++++|++...+++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~-tg~~~~~~~~~~-~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL-NNQLSRVIYLPP-PITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT-TTEEEEEEECCT-TTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC-CCeEEEEEECCh-hhcccccccceEEEecCCCEEEEEcCcc
Confidence 456688999999998877665 3 6899999998 455455443321 11223445689999986525555555
Q ss_pred -CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEe
Q 010801 288 -SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 288 -~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~ 365 (501)
.++.|.+||+.+++.. +.+..|.. .......+.++|+.+.+.+ ++.++.|..
T Consensus 142 ~~~~~i~v~d~~~g~~~----r~~~~~~~------------~~~~~~~~~~~g~~~~~~~~~g~~~~~~~---------- 195 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAA----RVLQGYPG------------IAPEDIDLVIDGVPVQIGQPDGTVIRPHL---------- 195 (343)
T ss_dssp GGGCEEEEEETTTCCEE----EECTTCTT------------TSCCSCCCEETTEECBEECTTSCEECCCC----------
T ss_pred CCCCeEEEEECCCCCEE----EEecCCCc------------ccccccceeECCEEEEeccCCCceeceec----------
Confidence 6789999999877532 22222100 0000133455666655543 355544321
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC-eEEEEecC---CCC----cc--eEEEecccCcccceee
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHG---VGS----AG--GITVEAGKNENRKPIL 435 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~---~~~----~~--~~~~~~~~~~v~~~~~ 435 (501)
.. ..++|+|||+.|+.+..++ .|..++.. .+. .. .....++......+++
T Consensus 196 ----~~----------------~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 196 ----GV----------------NGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ----CE----------------EEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ----cc----------------ceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 11 5799999999888877765 45444432 110 00 0122234445567788
Q ss_pred ccCCccccCccceeeeecccce-eeccc-cCCcccccc--cCCCeEEEEEccCCCEEEEee
Q 010801 436 QAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYN--LSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~-~iw~~-~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~ 492 (501)
.+ ++.+ .++....+. ..|+. .+....... .......++|.+++.++++.+
T Consensus 256 d~--~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 256 DK--DHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CT--TCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CC--CCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 76 5666 666666666 88866 433222221 234678999999998877766
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-08 Score=94.58 Aligned_cols=77 Identities=12% Similarity=0.045 Sum_probs=57.1
Q ss_pred EEEeeCCCEEEEE-c-C--------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEE
Q 010801 333 IKFANDGQHLLSR-D-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFAT 401 (501)
Q Consensus 333 ~~~sp~~~~l~~~-~-~--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s 401 (501)
++++||++.+..+ . . +.+.++|+.+ .+.+.++.....+ ..++|+|||+ ++++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNYA 331 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEEE
Confidence 7899999877754 2 2 3566999987 7778887765543 5899999998 5566
Q ss_pred Ee-CCCeEEEEecCCCCcceEEEeccc
Q 010801 402 GS-YSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 402 ~~-~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
.. .++.|.++|+.+++ ...+++...
T Consensus 332 ~~~~~~~VsVID~~t~k-vv~~I~vg~ 357 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQ-DQSSVELDK 357 (368)
T ss_dssp EETTTTEEEEEESSSCE-EEEECCCCS
T ss_pred ccCCCCeEEEEECCCCc-EEEEEECCC
Confidence 66 59999999999884 335555443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-07 Score=89.10 Aligned_cols=234 Identities=10% Similarity=0.011 Sum_probs=130.8
Q ss_pred EEEecCCCCEEEEE-c----------CCeEEEEECCCCCeeeeeeecC-CCCCCCcccceEEEEEecCCCcEEEEEeC--
Q 010801 223 SISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSS-- 288 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-- 288 (501)
.++++|||+.++++ . ++.|.++|..+ .+....+.+. .... ........+.++|+| ++++++..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-~~vv~~I~v~g~~r~-~~g~~P~~~~~spDG-k~lyV~n~~~ 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-FLPIADIELPDAPRF-LVGTYQWMNALTPDN-KNLLFYQFSP 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCC-CBSCCGGGSEECTTS-SEEEEEECSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-CcEEEEEECCCcccc-ccCCCcceEEEcCCC-CEEEEEecCC
Confidence 68999999988876 3 57899999994 4455544322 1111 011234578999999 88888764
Q ss_pred CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCC-CE-EEEEcCCcEEEEEeeCCCCceeEe-
Q 010801 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QH-LLSRDYMNLKLWDIRMDSTPVATF- 365 (501)
Q Consensus 289 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~-l~~~~~~~i~lwd~~~~~~~~~~~- 365 (501)
++.|.+.|+.+++.. ..+.. ... ....|++ +. ++...+|.+.+.+... ++.....
T Consensus 199 ~~~VsVID~~t~kvv----~~I~v---------------~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~ 256 (426)
T 3c75_H 199 APAVGVVDLEGKTFD----RMLDV---------------PDC--YHIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNT 256 (426)
T ss_dssp SCEEEEEETTTTEEE----EEEEC---------------CSE--EEEEEEETTEEEEEETTSSEEEEECCT-TCCEEEEC
T ss_pred CCeEEEEECCCCeEE----EEEEc---------------CCc--eeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee
Confidence 588999999998654 33332 011 2334443 22 2233457777777732 4443221
Q ss_pred ---eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce-EEEec----------ccCccc
Q 010801 366 ---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVEA----------GKNENR 431 (501)
Q Consensus 366 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~----------~~~~v~ 431 (501)
...... ++ ..+.+++++..++..+..+.|.+.|+....... ..+.. ......
T Consensus 257 ~~~~v~~~p------------~~--~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 257 EVFHTEDEL------------LI--NHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp CCCSCTTSC------------BC--SCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred eeeccCCCc------------ee--eEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 111111 10 246789998888777888999999987542110 11110 011122
Q ss_pred ceeeccCCccccCccceeeeecc-------cce-eec--cccC-CcccccccCCCeEEEEEccCCC-EEEEee--CCeEE
Q 010801 432 KPILQAAPRARRSSLSNLTRGLY-------RQA-HEN--SSSG-HHELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLF 497 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~-------~~~-~iw--~~~~-~~~~~~~~~~~i~~~~~sp~~~-~la~~~--~~~~~ 497 (501)
.+++++ ++.. .+++... .+. .++ +... ..............++|+|||+ .|+++. ++.+.
T Consensus 323 ~va~s~--dg~r----lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 323 QTAYHR--QSDR----IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp CEEEEG--GGTE----EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred eeEEcC--CCCE----EEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 356666 3332 0232211 012 444 2221 1111222233577899999999 888777 57788
Q ss_pred EEeC
Q 010801 498 FHYA 501 (501)
Q Consensus 498 i~~~ 501 (501)
|+++
T Consensus 397 VID~ 400 (426)
T 3c75_H 397 IYDA 400 (426)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8863
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=104.42 Aligned_cols=237 Identities=10% Similarity=0.028 Sum_probs=143.2
Q ss_pred CCcccceEEEEecCCCCEEEEE------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC
Q 010801 215 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 288 (501)
.++...+..++|||||++|+.+ +...|++||+.++. .+... +. ......++|+ |+ +.|+.++.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~~~------~~--~~k~~~~~Ws-Dg-~~l~y~~~ 193 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-PLETP------LK--DVKFSGISWL-GN-EGFFYSSY 193 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-EEEEE------EE--EEESCCCEEE-TT-TEEEEEES
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-CCccc------cC--CceeccEEEe-CC-CEEEEEEe
Confidence 3455678889999999999854 23579999999544 33210 11 1113567899 98 88888877
Q ss_pred CC-------------eEEEEEccCCcccccccceeecccccCCCcceeee-cccceeEEEEeeCCCEEEEE-c---C-Cc
Q 010801 289 RG-------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR-D---Y-MN 349 (501)
Q Consensus 289 dg-------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~l~~~-~---~-~~ 349 (501)
+. .|++|++.+..... ..++.. .. |...+..+.|+|||++|+.. . . +.
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDD--RLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGC--EEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred cCcccccccccCCCcEEEEEECCCCcccc--eEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 64 38999987754221 123332 11 23457789999999988643 2 2 58
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE-EEeCC---CeEEEEecCCCCc-ceEEEe
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYS---NLLRIFSHGVGSA-GGITVE 424 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~d---g~i~iwd~~~~~~-~~~~~~ 424 (501)
|+++|+.........+..+.... ... |+++|..|+ ....+ +.|..+++.++.. ....+.
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred EEEEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 99999875333455555544432 233 666666554 44433 6899999987643 124566
Q ss_pred cccCcccceeeccCCccccCccceeeeecc-cce---eeccccCCcccc--cccCCCeEEEEEccCCCEEEEeeC-----
Q 010801 425 AGKNENRKPILQAAPRARRSSLSNLTRGLY-RQA---HENSSSGHHELS--YNLSSKLLHLAWHPTTNLIACANG----- 493 (501)
Q Consensus 425 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-~~~---~iw~~~~~~~~~--~~~~~~i~~~~~sp~~~~la~~~~----- 493 (501)
.|...+. .+++ ++.. |+.... ++. .+|+........ ......+..++++|+++.|+....
T Consensus 325 ~~~~~~~--~~s~--~g~~-----lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP 395 (693)
T 3iuj_A 325 PERQQVL--TVHS--GSGY-----LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP 395 (693)
T ss_dssp CCCSSCE--EEEE--ETTE-----EEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC
T ss_pred cCCCCEE--EEEE--ECCE-----EEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC
Confidence 6666554 6666 4444 554444 443 444443322222 223346777888999887776542
Q ss_pred CeEEEEe
Q 010801 494 NSLFFHY 500 (501)
Q Consensus 494 ~~~~i~~ 500 (501)
..++.|+
T Consensus 396 ~~l~~~d 402 (693)
T 3iuj_A 396 PTLYRFE 402 (693)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 4577765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-06 Score=77.68 Aligned_cols=175 Identities=11% Similarity=-0.003 Sum_probs=103.2
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC---CCeEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVR 293 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~ 293 (501)
.....+++.+++..+..+ ..+.|.+++++ +....... .........++++|++ ..|+.+.. .+.|.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLF-------DTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE 149 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEEE-------ECCCCCccEEEEeeCC-CEEEEEECCCCCcEEE
Confidence 356789999876666554 67899999987 32222111 1112346899999975 44444443 46888
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
.+++..... +.+.. ..-.....++++|++..|..++ . +.|.++|... ......+.....+
T Consensus 150 ~~~~dg~~~-----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P 211 (267)
T 1npe_A 150 TSHMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP 211 (267)
T ss_dssp EEETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE
T ss_pred EEecCCCCc-----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc
Confidence 888764321 11111 0013568899999887776654 3 8899999863 2222222221111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc-CcccceeeccC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAA 438 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~ 438 (501)
..++.. ++.++++....+.|..+|..+++.+ .++.... .....+++.|.
T Consensus 212 ----------------~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 212 ----------------FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp ----------------EEEEEE-TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEECS
T ss_pred ----------------eEEEEe-CCEEEEEECCCCeEEEEeCCCCCce-EEEccccccccceeeecCc
Confidence 456664 4445555556789999999887443 5554433 23566666663
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-07 Score=94.59 Aligned_cols=195 Identities=10% Similarity=0.070 Sum_probs=111.6
Q ss_pred EEEecCCCCEEEEE-cCC-------------------eEEEEECCCCCeeeeeeecCCCCCC--CcccceEEEEEecCCC
Q 010801 223 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIYC 280 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~ 280 (501)
.+++.|++.+++.+ .++ .|..+|.++++..... ...+...- .......-+....+|.
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~-~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY-QETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-ESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE-ecCCCcccccccCCCcEEEecccCCc
Confidence 56778888888776 543 5888999855544432 11111000 0012223333444552
Q ss_pred --cEEEEEeCCCeEEEEEccCCcccccccceeeccccc------CCCc--------------cee---eecccceeEEEE
Q 010801 281 --NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES------HGSK--------------SFF---TEIIASISDIKF 335 (501)
Q Consensus 281 --~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~------~~~~--------------~~~---~~h~~~i~~~~~ 335 (501)
..++.++.+|.|+++|..+++.+... ...... ...+ ... .|.. .-..+++
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~-~w~~~a~ 400 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAK----NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH-NWHPMSF 400 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEE----ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS-CSSCCEE
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccc----cccccCcccccCCCCceeeccccCcCCCccEECcCccccc-CCCCceE
Confidence 46888899999999999999764211 100000 0000 000 0000 1136788
Q ss_pred eeCCCEEEEEc--------------------------------------------CCcEEEEEeeCCCCceeEeeccccc
Q 010801 336 ANDGQHLLSRD--------------------------------------------YMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 336 sp~~~~l~~~~--------------------------------------------~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
+|++.++++.. .+.|..||+.+ ++.+-++......
T Consensus 401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~ 479 (677)
T 1kb0_A 401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW 479 (677)
T ss_dssp ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC
T ss_pred cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC
Confidence 99887776531 16788999986 7766666533221
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-ccCcccceeeccCCcccc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARR 443 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~ 443 (501)
....+..++.+++.++.||.+++||..+++.+ ..+.. +......+.+.. +|+.
T Consensus 480 ----------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~--~G~~ 533 (677)
T 1kb0_A 480 ----------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMV--DGRQ 533 (677)
T ss_dssp ----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE--TTEE
T ss_pred ----------------cCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEe--CCEE
Confidence 24456667788888999999999999999655 55543 333334444433 4543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-07 Score=92.73 Aligned_cols=199 Identities=12% Similarity=0.090 Sum_probs=113.3
Q ss_pred EEEecCCCCEEEEE-cCC-------------------eEEEEECCCCCeeeeeeecCCCCCCC--cccceEEEEEecCCC
Q 010801 223 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYC 280 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~ 280 (501)
.+++.|++.+++.+ .++ .|..+|.++++..... ...+...-. ....+.......+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~-~~~~~d~wd~~~~~~~~l~d~~~~G- 316 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY-QTTPGDAWDYTATQHMILAELPIDG- 316 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee-ecCCcccccccCCCCcEEEeeccCC-
Confidence 57788888888887 665 3999999966554432 111110000 11222222333455
Q ss_pred c---EEEEEeCCCeEEEEEccCCcccccccc---eeecccc---------------cCCCcc--eeeec--ccceeEEEE
Q 010801 281 N---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE---------------SHGSKS--FFTEI--IASISDIKF 335 (501)
Q Consensus 281 ~---~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~~---------------~~~~~~--~~~~h--~~~i~~~~~ 335 (501)
+ .++.++.+|.++++|.++++.+..... .+..+-. .+.... ..++. ...-..+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 4 788999999999999999976521000 0000000 000000 00000 001234788
Q ss_pred eeCCCEEEEEc----------------------------------------------CCcEEEEEeeCCCCceeEeeccc
Q 010801 336 ANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 336 sp~~~~l~~~~----------------------------------------------~~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
+|+..++++.. ++.|+.||+.+ ++.+-.+..+.
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~ 475 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT 475 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence 88877766531 25688899886 77766665443
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc-CcccceeeccCCcccc
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRARR 443 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~ 443 (501)
.. ..-.+...+.+++.|+.||.++.||.++|+.+ ..++... .....+.+.. +|+.
T Consensus 476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~ty~~--~G~q 531 (689)
T 1yiq_A 476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL-WEQPAASGVMAAPVTYSV--DGEQ 531 (689)
T ss_dssp SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE--TTEE
T ss_pred Cc----------------cCccceECCCEEEEECCCCcEEEEECCCCccc-eeeeCCCCcccCceEEEE--CCEE
Confidence 22 23355567789999999999999999999655 5555433 2234555544 5654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-06 Score=78.71 Aligned_cols=154 Identities=10% Similarity=0.037 Sum_probs=80.4
Q ss_pred CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010801 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (501)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 309 (501)
..++.+ .++.|..+|..++...... .......... ........ + ..+++++.++.|..+|..+++... .
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~--~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w----~ 213 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTV-NLDMPSLSLR--GESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIW----Q 213 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEE-ECCC-----C--CCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEE----E
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEE-eCCCCceeec--CCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEE----E
Confidence 366666 8899999999855544332 1110000000 00112222 3 457778889999999999886432 1
Q ss_pred eecccccCCCcceeeecccce-eEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCccee
Q 010801 310 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~i-~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (501)
... . .+.....+... ..+ ..... .++ .+..+ .++.+..+|.++ ++.+........
T Consensus 214 ~~~-~-~~~~~~~~~~~-~~~~~~p~~-~~~-~v~~~~~~g~l~~~d~~t-G~~~w~~~~~~~----------------- 270 (376)
T 3q7m_A 214 QRI-S-QATGSTEIDRL-SDVDTTPVV-VNG-VVFALAYNGNLTALDLRS-GQIMWKRELGSV----------------- 270 (376)
T ss_dssp EEC-C-C------------CCCCCCEE-ETT-EEEEECTTSCEEEEETTT-CCEEEEECCCCE-----------------
T ss_pred Eec-c-cCCCCcccccc-cccCCCcEE-ECC-EEEEEecCcEEEEEECCC-CcEEeeccCCCC-----------------
Confidence 111 0 00000000000 001 11111 234 44444 468999999986 666554432111
Q ss_pred eEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 388 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
..+.. ++..|..++.++.|..+|..+++.+
T Consensus 271 ~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 271 NDFIV--DGNRIYLVDQNDRVMALTIDGGVTL 300 (376)
T ss_dssp EEEEE--ETTEEEEEETTCCEEEEETTTCCEE
T ss_pred CCceE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 23333 3567788888999999999998543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=7.6e-08 Score=89.14 Aligned_cols=254 Identities=9% Similarity=0.034 Sum_probs=137.9
Q ss_pred EEEEccCCCEEEEEe----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC-Ccchh
Q 010801 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (501)
Q Consensus 37 ~v~~s~~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (501)
.+.|+|||++|+++. .++.|.+||..+++.. .++..+ .+.|
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv---------------------------~~I~v~~~~~~- 120 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF- 120 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---------------------------EEEEETTSCSC-
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---------------------------EEEECCCcccc-
Confidence 799999999998886 3688999999987642 333211 0000
Q ss_pred hccccccccceeEEEEeecCCCCEEEEeeC--CCeEEE--EeccccceeeeeccCCCcccccccccccccCccccCCCCC
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKL--WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~l--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (501)
........++++ |||++++++.. +..+.+ +|..+ . ...... . ++ .....+......
T Consensus 121 -----~~g~~P~~ia~S--pDGk~lyVan~~~~~~v~V~~iD~~t--v-~~i~v~--~---~~-~~~p~g~~~~~~---- 180 (368)
T 1mda_H 121 -----SVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGASD--D-QLTKSA--S---CF-HIHPGAAATHYL---- 180 (368)
T ss_dssp -----CBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTTEE--E-EEEECS--S---CC-CCEEEETTEEEC----
T ss_pred -----ccCCCcceEEEc--CCCCEEEEEccCCCCeEEEEEEchhh--c-eEEECC--C---ce-EEccCCCeEEEE----
Confidence 000124568887 89999998864 467888 99887 2 222110 0 00 000011111111
Q ss_pred CcccccceeccCcceEEEeccCcee--eeeeE---eecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCC-eeee
Q 010801 182 FAHGYHLEWTENMATKIANVGNSVH--ARCQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFN 254 (501)
Q Consensus 182 ~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~ 254 (501)
...++.+...+.+.... .+... ....-...+. . .+++..++.. . +.|.+.|..... ....
T Consensus 181 --------~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~ 247 (368)
T 1mda_H 181 --------GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA 247 (368)
T ss_dssp --------CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC
T ss_pred --------EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE
Confidence 12244444455443000 00000 0001112222 3 5555565555 7 999999986322 2222
Q ss_pred eeecCCCCC--CC-cccceEEEEEecCCCcEEEEEeC---------CCeEEEEEccCCcccccccceeecccccCCCcce
Q 010801 255 IVDMKPSNM--DD-LTEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (501)
Q Consensus 255 ~~~~~~~~~--~~-~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.+.+..... .+ .......++++|++ +.++++.. ++.+.++|+.+++.. ..+..
T Consensus 248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v---------- 312 (368)
T 1mda_H 248 AIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN---------- 312 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE----------
T ss_pred EEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC----------
Confidence 211110000 00 01111226899998 65555432 235679999998654 33333
Q ss_pred eeecccceeEEEEeeCCCE-EEEEc--CCcEEEEEeeCCCCceeEeeccccc
Q 010801 323 FTEIIASISDIKFANDGQH-LLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 323 ~~~h~~~i~~~~~sp~~~~-l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
......++|+|||++ +++.. ++.|.++|+.+ .+.+.++.....+
T Consensus 313 ----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 ----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp ----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred ----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 135899999999984 44444 59999999997 8888888766654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.9e-05 Score=78.40 Aligned_cols=247 Identities=11% Similarity=0.074 Sum_probs=137.4
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCC-CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
...|.++...++|.+.+...+ -|.+||.. ....... ...+. ...-....|.++...++| .+ -.|+.++-|..|+
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~~~~~-~~~~~~~~~l~~~~i~~i~~D~~g-~l-Wigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDSFASY-SSNPVENGSLSQRSVRSIFMDSQG-GM-WLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEEEEETT-TTEEEEE-CCCTTSTTSCSSSCEEEEEECTTS-CE-EEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCeEEEE-ecCCCCCCCCCCCcEEEEEEeCCc-CE-EEEECCCCeEEeC
Confidence 356889988888876665555 58889977 3333221 11110 011234679999999987 64 4567777788998
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccc-cccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE-HLRPKL 375 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~ 375 (501)
..+... ..+.. ...+.. -....|.++...++|.+.+...++-|..||..+ ++ ...+.... .....
T Consensus 337 ~~~~~~-----~~~~~-~~~~~~-----l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~- 402 (795)
T 4a2l_A 337 PIRNRF-----KNIRN-IPYKNS-----LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARG- 402 (795)
T ss_dssp GGGGSS-----EEECC-CTTSSS-----CSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CC-EEEECCC------C-
T ss_pred CCcccc-----eEEcC-CCCCCC-----CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccC-
Confidence 765432 11111 000000 013568999988888866655556899998763 32 33332111 00000
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-----ccCcccceeeccCCccccCccceee
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLT 450 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~ 450 (501)
+ .... |.+++..++++.|..|+.++-|.+||..+++. ..+.. ....|.++...+ ++.+ .+
T Consensus 403 --l-~~~~---v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d~--~g~l-----wi 467 (795)
T 4a2l_A 403 --I-GSNN---IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPDG--EGNL-----WL 467 (795)
T ss_dssp --C-SCSC---EEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEECS--SSCE-----EE
T ss_pred --C-CCcc---EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEECC--CCCE-----EE
Confidence 0 0111 26888888888566677777799999887632 22221 223455554433 4443 22
Q ss_pred eecccceeeccccCCccccc-------c-cCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 451 RGLYRQAHENSSSGHHELSY-------N-LSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 451 ~~~~~~~~iw~~~~~~~~~~-------~-~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
|...|...++......... . ....|.++...++|.+.+... ++++.|+
T Consensus 468 -gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 468 -GTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK 523 (795)
T ss_dssp -EESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred -EecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence 2233434443221111111 1 235789999999998766555 7888875
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-09 Score=101.41 Aligned_cols=188 Identities=10% Similarity=0.003 Sum_probs=95.3
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
++..|++++.||.|+.||..+|+.. -.+.. . .+.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------W~~~~-~-------------~~~s~p~~ 46 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------WTLKE-D-------------PVLQVPTH 46 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---------------------------EEEEC-C-------------CSCCCC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEecC-C-------------CceecceE
Confidence 5778999999999999999988652 11221 1 12233332
Q ss_pred ecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEecc
Q 010801 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (501)
Q Consensus 123 ~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~ 202 (501)
.++..+++++.|+.|+.||..+++...........
T Consensus 47 --~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~------------------------------------------- 81 (369)
T 2hz6_A 47 --VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE------------------------------------------- 81 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CCSEECSCCHHH-------------------------------------------
T ss_pred --cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-------------------------------------------
Confidence 45667888889999999999887754322110000
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
.....++ +. ++..++++ .++.|+.||..+++.... +..+. ...++|++ .
T Consensus 82 ------------~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~--------~~~~~----~~~~~p~~-~ 131 (369)
T 2hz6_A 82 ------------LVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQT--------LSSAF----ADSLSPST-S 131 (369)
T ss_dssp ------------HHTTCSC----C------CCCCEEEEEEEEECCC----------------------------------
T ss_pred ------------ccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEE--------ecCCC----cccccccC-C
Confidence 0000111 11 23355666 889999999985544332 22221 23456677 8
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC----CCEEEEEcCCcEEEEEeeC
Q 010801 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKLWDIRM 357 (501)
Q Consensus 282 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~~~~~~~i~lwd~~~ 357 (501)
.+++++.|+.|+.||.++++... .+.. ......++.++ +.+++...++.|+.||.++
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~~~W----~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTRELRW----NATY---------------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSSCCC----EEEE---------------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred EEEEEecCCEEEEEECCCCCEEE----eEec---------------ccccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 88899999999999999987542 1111 00122223332 4444444569999999986
Q ss_pred CCCceeEee
Q 010801 358 DSTPVATFK 366 (501)
Q Consensus 358 ~~~~~~~~~ 366 (501)
++.+..+.
T Consensus 193 -G~~~W~~~ 200 (369)
T 2hz6_A 193 -GDVLWIQN 200 (369)
T ss_dssp -CCEEEEEE
T ss_pred -CcEEEEec
Confidence 77666655
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-09 Score=102.13 Aligned_cols=186 Identities=9% Similarity=0.045 Sum_probs=98.1
Q ss_pred CCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCce
Q 010801 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (501)
Q Consensus 126 ~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~ 205 (501)
++..+++++.|+.|+.||..+++.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 567899999999999999999886654311
Q ss_pred eeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc-cceE-EEEEecCCCcE
Q 010801 206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVIT-SAEFHPIYCNL 282 (501)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~-~v~~~p~~~~~ 282 (501)
..+.+..+..++..++++ .|+.|+.||..+++.... ...+. ..+. +..+. .+ ..
T Consensus 38 -------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~--------~~~~~~~~~~~sp~~~-~~-~~ 94 (369)
T 2hz6_A 38 -------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK--------LPFTIPELVQASPCRS-SD-GI 94 (369)
T ss_dssp -------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE--------CSCCHHHHHTTCSCC-------
T ss_pred -------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee--------eeccCccccccCceEe-cC-CE
Confidence 122222334567777877 999999999974443322 11111 0010 11111 23 56
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCc
Q 010801 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (501)
Q Consensus 283 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~ 361 (501)
+++++.++.|+.||..+++... .+.. + . ...++|++..+++++ ++.|+.||.++ ++.
T Consensus 95 v~~g~~dg~v~a~D~~tG~~~w----~~~~-------------~-~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~ 152 (369)
T 2hz6_A 95 LYMGKKQDIWYVIDLLTGEKQQ----TLSS-------------A-F---ADSLSPSTSLLYLGRTEYTITMYDTKT-REL 152 (369)
T ss_dssp CCCCEEEEEEEEECCC-------------------------------------------EEEEEEEEEEECCCSSS-SSC
T ss_pred EEEEeCCCEEEEEECCCCcEEE----EecC-------------C-C---cccccccCCEEEEEecCCEEEEEECCC-CCE
Confidence 7788889999999999987542 2222 0 1 133456777777765 59999999986 776
Q ss_pred eeEeeccccccccccccCCCCCcceeeEEEEcCCC---cEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+..+..... ...+++.+. ..+++++.||.|+.||..+++.+ ....
T Consensus 153 ~W~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~ 200 (369)
T 2hz6_A 153 RWNATYFDY-----------------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL-WIQN 200 (369)
T ss_dssp CCEEEEEEE-----------------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE-EEEE
T ss_pred EEeEecccc-----------------cCccccCCccccceEEEECCCCEEEEEECCCCcEE-EEec
Confidence 655543221 123333332 45677889999999999998543 4443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.9e-06 Score=77.59 Aligned_cols=170 Identities=11% Similarity=0.030 Sum_probs=99.4
Q ss_pred eEEEEecCCCCEEEEE-cC------CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe------
Q 010801 221 INSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------ 287 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~------ 287 (501)
-..+...|+| +++++ .+ +.|.+.|.. +.+.+..+... .+....-..+-|+|++ +.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~-T~~v~~~~~~~----~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~ 212 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY-SFEPLGKWEID----RGDQYLAYDFWWNLPN-EVLVSSEWAVPNT 212 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT-TCCEEEECCSB----CTTCCCCCCEEEETTT-TEEEECBCCCHHH
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC-CCeEEEEEccC----CCCccccceEEECCCC-CEEEEccCcCccc
Confidence 3456778999 77775 44 789999998 45555554211 1111223467889999 8887774
Q ss_pred -------------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEE--eeCCCEEEEE-c-----
Q 010801 288 -------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSR-D----- 346 (501)
Q Consensus 288 -------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~~~~l~~~-~----- 346 (501)
...+|.+||+.+++.. +.+.. .. .......+.| +|+++++.++ .
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~k~~----~tI~v-g~----------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKRKRI----HSLTL-GE----------ENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTTEEE----EEEES-CT----------TEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred cccccchhhhhhccCCEEEEEECCCCcEe----eEEec-CC----------CCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 3789999999986543 33332 00 0122345555 9999987654 3
Q ss_pred C-CcEEEEEeeCCCCc--eeEeecccccc-ccccccC----C-CCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCC
Q 010801 347 Y-MNLKLWDIRMDSTP--VATFKIHEHLR-PKLCDLY----N-NDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 416 (501)
Q Consensus 347 ~-~~i~lwd~~~~~~~--~~~~~~~~~~~-~~~~~~~----~-~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~ 416 (501)
. ++|.+|..+. ++. .+.+......+ ..+.++. . ... ...+.+|+||++|.++.. .+.|.+||+...
T Consensus 278 Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~---pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 278 LSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL---VTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp CCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCC---CCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred CCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCc---eeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 3 7888877653 321 11111111000 0000000 0 001 168999999999887665 789999998643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-06 Score=83.40 Aligned_cols=184 Identities=8% Similarity=-0.012 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC---------------eEEEEEccCCcc
Q 010801 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------------FVRLVDMRQSAL 302 (501)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---------------~i~~wd~~~~~~ 302 (501)
++.+.+.|..+ .+....+. ..+ ....++++|+| +++++.+.+. .|.+.|......
T Consensus 174 ~~~vtvID~~t-~~v~~qI~-----Vgg---~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 174 VNVFTAVDADK-WEVAWQVL-----VSG---NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp EEEEEEEETTT-TEEEEEEE-----ESS---CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred CceEEEEECCC-CeEEEEEE-----eCC---CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 45788999884 34443331 112 23567789998 8777777553 355555433210
Q ss_pred c--------ccccceeecccccCC-C-cceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCC----------
Q 010801 303 C--------DHSARILRDAAESHG-S-KSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDST---------- 360 (501)
Q Consensus 303 ~--------~~~~~~~~~~~~~~~-~-~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~---------- 360 (501)
. ...+.+++. ..... . ...++ -.....++.++|||+++++++ +.+|.++|+.+ .+
T Consensus 244 ~v~~Gk~~~i~~V~VID~-~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~ 320 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDG-RKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPR 320 (595)
T ss_dssp HHHHTCSEEETTEEEEEC-SGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGG
T ss_pred eccCCCeeEECcEEEEeC-cccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcc
Confidence 0 011222222 11000 0 00111 124568899999999998775 49999999975 21
Q ss_pred --ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC---------CcceEEEecccCc
Q 010801 361 --PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SAGGITVEAGKNE 429 (501)
Q Consensus 361 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~ 429 (501)
..........+ ..++|+|+|...++.-.|+.|.+||++.. ......+..|..+
T Consensus 321 ~~v~~~v~vG~gP----------------~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 321 SAVVAEPELGLGP----------------LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp GGEEECCBCCSCE----------------EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred cceEEEcCCCCCc----------------ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 12222222222 68999999954556667999999999762 2345666665443
Q ss_pred -----ccceeeccCCccccCccceeeeecccce
Q 010801 430 -----NRKPILQAAPRARRSSLSNLTRGLYRQA 457 (501)
Q Consensus 430 -----v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (501)
......++ +|++ |++..+-.+
T Consensus 385 Gh~~~~~g~t~~~--DGk~-----l~~~Nk~sk 410 (595)
T 1fwx_A 385 GHLKTVMGETLDA--TNDW-----LVCLSKFSK 410 (595)
T ss_dssp EEEEETTTTSTTC--CSSE-----EEEEESCCT
T ss_pred ccceeccceEeCC--CCCE-----EEEcCCCCc
Confidence 23334444 7887 666654443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-05 Score=70.47 Aligned_cols=220 Identities=13% Similarity=0.131 Sum_probs=129.3
Q ss_pred cceEEEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+..++|++++..|..+. .++.|.+++..++... ..+....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---------------------------~~~~~~~---------- 78 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---------------------------TIIRQDL---------- 78 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------------------------EEECTTC----------
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---------------------------EEEECCC----------
Confidence 4578999999776666554 5678999998754321 1111111
Q ss_pred cccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 112 IEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
.....+++. +++..++.+ ...+.|.+++..........
T Consensus 79 --~~p~~ia~d--~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------------------------------------- 117 (267)
T 1npe_A 79 --GSPEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVLF------------------------------------- 117 (267)
T ss_dssp --CCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------------------------
T ss_pred --CCccEEEEE--ecCCeEEEEECCCCEEEEEEcCCCCEEEEE-------------------------------------
Confidence 346788886 555555444 46678888887643321111
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--c--CCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.........++++|++..|..+ . .+.|..++++ +.. ...+ ....
T Consensus 118 ------------------------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~-~~~~------~~~~ 165 (267)
T 1npe_A 118 ------------------------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTN-RRIL------AQDN 165 (267)
T ss_dssp ------------------------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCC-CEEE------ECTT
T ss_pred ------------------------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCC-cEEE------EECC
Confidence 1112345789999966665554 3 4688888887 322 2211 1112
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
......++++|++..++++-...+.|..+|....... ..... ......++. ++..|..++
T Consensus 166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~~~--------------~~~P~gi~~--d~~~lyva~ 225 (267)
T 1npe_A 166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTS--YGKNLYYTD 225 (267)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEE--ETTEEEEEE
T ss_pred CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----EEecC--------------CCCceEEEE--eCCEEEEEE
Confidence 2356899999987245555556789999998754321 11111 112345554 345555443
Q ss_pred -C-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 347 -Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 347 -~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
. +.|..+|..+ ++.+..+.......+ ..+++.|++.
T Consensus 226 ~~~~~v~~~d~~~-g~~~~~i~~g~~~~p--------------~gi~~~~~~~ 263 (267)
T 1npe_A 226 WKTNSVIAMDLAI-SKEMDTFHPHKQTRL--------------YGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEETTT-TEEEEEECCSSCCCC--------------CCEEEECSCC
T ss_pred CCCCeEEEEeCCC-CCceEEEcccccccc--------------ceeeecCccC
Confidence 3 8999999875 777777754332111 5788888764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.7e-07 Score=81.91 Aligned_cols=211 Identities=10% Similarity=0.037 Sum_probs=118.6
Q ss_pred CCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010801 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (501)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 308 (501)
+..+..+ .++.|..+|.. +...... ......+.++...+++ . +..++.++.|..+|.. ++.. .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~----~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEK----W 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEE----E
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEe----E
Confidence 3456666 78999999987 5443332 1122334556667676 5 5667788999999988 5432 1
Q ss_pred eeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceee
Q 010801 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (501)
.+.. ....+.++...+++.+.++. +.|..+| .+ ++.+..+......+ .
T Consensus 171 ~~~~-------------~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~---------------~ 218 (330)
T 3hxj_A 171 RFKT-------------NDAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWTV---------------T 218 (330)
T ss_dssp EEEC-------------SSCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCCC---------------S
T ss_pred EEec-------------CCCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcce---------------e
Confidence 1111 12346667777788766554 8899999 43 66555554332222 5
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCc-
Q 010801 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH- 466 (501)
Q Consensus 389 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~- 466 (501)
++...++|.+ ..++.++.|..++. ++... ..+......+..+.... ++. +..++.++. ..++.....
T Consensus 219 ~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~-~~~~~~~~~~~~~~~~~--~g~------l~v~t~~ggl~~~d~~g~~~ 287 (330)
T 3hxj_A 219 RPAISEDGTI-YVTSLDGHLYAINP-DGTEK-WRFKTGKRIESSPVIGN--TDT------IYFGSYDGHLYAINPDGTEK 287 (330)
T ss_dssp CCEECTTSCE-EEEETTTEEEEECT-TSCEE-EEEECSSCCCSCCEECT--TSC------EEEECTTCEEEEECTTSCEE
T ss_pred ceEECCCCeE-EEEcCCCeEEEECC-CCCEe-EEeeCCCCccccceEcC--CCe------EEEecCCCCEEEECCCCcEE
Confidence 6788888764 45667788888874 34333 44444333333444432 333 455555644 455333222
Q ss_pred ccccccCCCeEEEEEccCCCEEEEeeCCeEEEE
Q 010801 467 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 499 (501)
Q Consensus 467 ~~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~ 499 (501)
.........+.++...+++.+.+.+.++.+++.
T Consensus 288 ~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 288 WNFETGSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp EEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred EEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 111122345566777777776554444445543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=0.00018 Score=74.72 Aligned_cols=245 Identities=11% Similarity=0.023 Sum_probs=133.3
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
...|.++...++|.+.+...++-|..|+... .. ...+...+..-.-....|.++...++| ++. .|+.++-|..||.
T Consensus 309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g-~lW-iGt~~~Gl~~~~~ 384 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR-NR-FKNIRNIPYKNSLSDNVVSCIVEDKDK-NLW-IGTNDGGLNLYNP 384 (795)
T ss_dssp SSCEEEEEECTTSCEEEEESSSCEEEECGGG-GS-SEEECCCTTSSSCSCSSEEEEEECTTS-CEE-EEESSSCEEEECT
T ss_pred CCcEEEEEEeCCcCEEEEECCCCeEEeCCCc-cc-ceEEcCCCCCCCCCCCeeEEEEECCCC-CEE-EEECCCCeEEEcC
Confidence 4578999999998766655777888888762 22 221111110011134568999988887 644 4777777999998
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
.++... .+......+. . .-....|.++...++|+.|..|+ ++.|.+||..+ ++ ...+.......
T Consensus 385 ~~~~~~-----~~~~~~~~~~--~--~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l---- 449 (795)
T 4a2l_A 385 ITQRFT-----SYTLQEDESA--R--GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQL---- 449 (795)
T ss_dssp TTCCEE-----EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSCC----
T ss_pred CCCcEE-----EEecCCCCcc--c--CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCc----
Confidence 765421 1111000000 0 00125688999888898344444 47799999864 33 33333211000
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-------ccCcccceeeccCCccccCcccee
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-------GKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
.... +.++...++|++.+.. .+ -+.+|+..+++. ..+.. ....+.++...+ ++++ .
T Consensus 450 ---~~~~---v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~--~g~l-----W 512 (795)
T 4a2l_A 450 ---VNEN---VYAILPDGEGNLWLGT-LS-ALVRFNPEQRSF--TTIEKEKDGTPVVSKQITTLFRDS--HKRL-----W 512 (795)
T ss_dssp ---SCSC---EEEEEECSSSCEEEEE-SS-CEEEEETTTTEE--EECCBCTTCCBCCCCCEEEEEECT--TCCE-----E
T ss_pred ---CCCe---eEEEEECCCCCEEEEe-cC-ceeEEeCCCCeE--EEccccccccccCCceEEEEEECC--CCCE-----E
Confidence 0111 2688888888866654 44 478889876522 22211 123455554443 4544 2
Q ss_pred eeecccceeeccccCCcccc-------cccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 450 TRGLYRQAHENSSSGHHELS-------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 450 ~~~~~~~~~iw~~~~~~~~~-------~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
+ |...|...|+........ .-....|.++...++|++.+... ++++.|+
T Consensus 513 i-gt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d 568 (795)
T 4a2l_A 513 I-GGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFN 568 (795)
T ss_dssp E-EESSCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEE
T ss_pred E-EeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeEC
Confidence 2 222343444322111110 11245789999999988665444 4888875
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.69 E-value=7.5e-06 Score=79.17 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=94.2
Q ss_pred cCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE-e-cCCCcEEEEEe---------------
Q 010801 227 NSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-H-PIYCNLLAYSS--------------- 287 (501)
Q Consensus 227 ~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~-p~~~~~l~~~~--------------- 287 (501)
.+||+++... .+++|.+.|+. ..++.+++.+. ....+..+++ . |++ +++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip------~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTC
T ss_pred CcCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCC------CCCCCcceeeeecCCC-cEEEEecccccccCCCCccccc
Confidence 3588888776 67889999999 55666654322 1234678887 4 898 7777774
Q ss_pred ---CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCC----------------
Q 010801 288 ---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM---------------- 348 (501)
Q Consensus 288 ---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~---------------- 348 (501)
.++.+.+.|..+.+.. ..+.. .+....++++|+|+++++.+.+
T Consensus 170 ~~~~~~~vtvID~~t~~v~----~qI~V--------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp GGGEEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred ccccCceEEEEECCCCeEE----EEEEe--------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence 2467889999876543 22211 1234678899999988876421
Q ss_pred -----------------------cEEEEEeeCC-CCc-eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 349 -----------------------NLKLWDIRMD-STP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 349 -----------------------~i~lwd~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
.|.+.|.++. ++. +..+.....+ .++.++|||+++++++
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P----------------hGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKKHLCVAG 295 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC----------------CCEEECTTSSEEEEEC
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc----------------eEEEEcCCCCEEEEeC
Confidence 2344444320 111 2333322222 5799999999877655
Q ss_pred -CCCeEEEEecCCC
Q 010801 404 -YSNLLRIFSHGVG 416 (501)
Q Consensus 404 -~dg~i~iwd~~~~ 416 (501)
.+.+|.++|+.+.
T Consensus 296 ~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 296 KLSPTVTVLDVTRF 309 (595)
T ss_dssp TTSSBEEEEEGGGH
T ss_pred CCCCeEEEEECccc
Confidence 5899999999854
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-06 Score=76.13 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=92.0
Q ss_pred ceEEEEecC-CCCEEEEE-c-----------------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC
Q 010801 220 NINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (501)
Q Consensus 220 ~v~~l~~~~-~~~~l~~~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 280 (501)
....+++.+ +|.+.++. . ++.|..+|.. .+...... . .......++++|++
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~-------~-~~~~p~gia~~~dg- 196 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-TKETTLLL-------K-ELHVPGGAEVSADS- 196 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-TTEEEEEE-------E-EESCCCEEEECTTS-
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC-CCEEEEec-------c-CCccCcceEECCCC-
Confidence 456788888 88777764 2 2678888876 33322110 0 11234679999998
Q ss_pred cEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-----------C
Q 010801 281 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----------M 348 (501)
Q Consensus 281 ~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-----------~ 348 (501)
+.|+++ +.++.|..|++...... ....+.. ..+ ...+++.++|++.++... +
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~ 260 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDP 260 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECCCCCEEEEecCcccccccCCCcc
Confidence 755554 55789999998753211 0011111 012 677899999987666422 4
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
.|..+|. .++.+..+........ .. ++.+++ .+++++++...++.|..+++...
T Consensus 261 ~v~~~d~--~G~~~~~~~~~~g~~~--------~~---~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 261 KGIKFDE--FGNILEVIPLPPPFAG--------EH---FEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEECT--TSCEEEEEECCTTTTT--------SC---CCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEEEECC--CCCEEEEEECCCCCcc--------cc---ceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 5666665 3676766654432100 01 145666 46777777667889999988643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-05 Score=81.72 Aligned_cols=200 Identities=10% Similarity=-0.018 Sum_probs=105.6
Q ss_pred EEEEecCCCcEEEEEeCCCe-------------------EEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 272 SAEFHPIYCNLLAYSSSRGF-------------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~-------------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
.++++|++ .++++++.++. |..+|..+++... .+.... ..... + .....+.-
T Consensus 239 ~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W----~~~~~~--~d~wd-~-~~~~~~~l 309 (689)
T 1yiq_A 239 SFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW----HYQTTP--GDAWD-Y-TATQHMIL 309 (689)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE----EEESST--TCCSC-C-CCCSCEEE
T ss_pred ceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE----eeecCC--ccccc-c-cCCCCcEE
Confidence 57889988 88888888764 9999999987542 111100 00000 0 00112222
Q ss_pred EEEeeCCC---EEEEEc-CCcEEEEEeeCCCCceeEeeccccc-c-------------------------ccccccCCCC
Q 010801 333 IKFANDGQ---HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHL-R-------------------------PKLCDLYNND 382 (501)
Q Consensus 333 ~~~sp~~~---~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~~~ 382 (501)
.....+|+ .++.++ +|.++++|.++ ++++......... . ...++-....
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg 388 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA 388 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc
Confidence 23334665 666665 49999999986 7776443221100 0 0000000000
Q ss_pred CcceeeEEEEcCCCcEEEEEeC---------------------------------------------CCeEEEEecCCCC
Q 010801 383 SIFDKFECSVSGDGLHFATGSY---------------------------------------------SNLLRIFSHGVGS 417 (501)
Q Consensus 383 ~~~~~~~~~~s~~~~~l~s~~~---------------------------------------------dg~i~iwd~~~~~ 417 (501)
... ..++++|+..++++... +|.|+.||+.+++
T Consensus 389 ~~w--~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 389 HDW--QPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp SCS--SCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cCC--CcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 000 24789998877776532 3789999999995
Q ss_pred cceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc--ccCCccccc-ccCCCeEEEEEccCCCE-EEEee
Q 010801 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSY-NLSSKLLHLAWHPTTNL-IACAN 492 (501)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~--~~~~~~~~~-~~~~~i~~~~~sp~~~~-la~~~ 492 (501)
.+ ..++.+. +.....+.. .+.+ ++.|+.|+. +.|+ +++.+.... .....-.-+.|..+|++ +++.+
T Consensus 467 ~~-W~~~~~~-~~~~g~~~t--aggl-----vf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 467 AA-WEVPYVT-IFNGGTLST--AGNL-----VFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EE-EEEEESS-SCCCCEEEE--TTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eE-eEccCCC-CccCccceE--CCCE-----EEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 43 4444443 223333333 3333 666777777 7773 333332222 21111234667888874 55443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-05 Score=69.02 Aligned_cols=207 Identities=7% Similarity=-0.000 Sum_probs=124.1
Q ss_pred ceEEEEEccCCCEEEEEec--CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee--ccCCcchhhccc
Q 010801 34 IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--QSHEPEFDYLKS 109 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~ 109 (501)
....++|++++.+.++.+. ++.|.++|+.+++.. ..+ ..+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~---------------------------~~i~l~~~~-------- 66 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE---------------------------NIHKMDDSY-------- 66 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE---------------------------EEEECCTTC--------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE---------------------------EEEecCCCc--------
Confidence 3578999998754444332 579999999988652 222 1221
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
....+++. ++..+++.-.++.+.++|..+.+........
T Consensus 67 -----fgeGi~~~---g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--------------------------------- 105 (266)
T 2iwa_A 67 -----FGEGLTLL---NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--------------------------------- 105 (266)
T ss_dssp -----CEEEEEEE---TTEEEEEETTCSEEEEEETTTTEEEEEEECC---------------------------------
T ss_pred -----ceEEEEEe---CCEEEEEEecCCEEEEEECCCCcEEEEEECC---------------------------------
Confidence 12345553 2344444457899999999988765543211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
.++ ...+++||+.++++ .++.|.++|..+. +....+.+.. -...-.
T Consensus 106 -------------------------~~~-----g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~--~~~p~~ 152 (266)
T 2iwa_A 106 -------------------------MKD-----GWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKY--NGHRVI 152 (266)
T ss_dssp -------------------------SSS-----CCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEE--TTEECC
T ss_pred -------------------------CCC-----eEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECC--CCcccc
Confidence 011 12245678888888 7889999999843 4444432210 011122
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCC--CcceeeecccceeEEEEeeCCCEEEE-E
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG--SKSFFTEIIASISDIKFANDGQHLLS-R 345 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~~~~sp~~~~l~~-~ 345 (501)
.++.+.|. ++ .+++....++.|.+.|..+++.. ..+......+. ... ..-....+.++|+|+++.+.+ +
T Consensus 153 ~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~----~~I~~~g~~~~~~~~~--~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 153 RLNELEYI-NG-EVWANIWQTDCIARISAKDGTLL----GWILLPNLRKKLIDEG--FRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp CEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEE----EEEECHHHHHHHHHTT--CTTCCCEEEEEEETTTTEEEEEE
T ss_pred cceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEE----EEEECCCccccccccc--ccccCceEEEEEcCCCCEEEEEC
Confidence 46788888 66 77766667899999999998765 33332000000 000 000135689999999876654 4
Q ss_pred cC-CcEEEEEeeC
Q 010801 346 DY-MNLKLWDIRM 357 (501)
Q Consensus 346 ~~-~~i~lwd~~~ 357 (501)
.. +.+.+.++..
T Consensus 225 k~~~~v~~i~l~~ 237 (266)
T 2iwa_A 225 KLWPKLFEIKLHL 237 (266)
T ss_dssp TTCSEEEEEEEEE
T ss_pred CCCCeEEEEEEec
Confidence 43 8898888874
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-05 Score=73.67 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=83.8
Q ss_pred CEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC----CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010801 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 305 (501)
Q Consensus 231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 305 (501)
..++.+ .++.+..+|..++...... ...... +............. + ..++.++.++.+..+|..+++..
T Consensus 189 ~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~~~~g~l~~~d~~tG~~~-- 262 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVV--N-GVVFALAYNGNLTALDLRSGQIM-- 262 (376)
T ss_dssp TEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEE--T-TEEEEECTTSCEEEEETTTCCEE--
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEE--C-CEEEEEecCcEEEEEECCCCcEE--
Confidence 466667 8899999998855443332 111000 00000000011111 3 56777788999999999988643
Q ss_pred ccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCc
Q 010801 306 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (501)
+.. . ......+.. ++..+..+ .++.|..+|..+ ++.+...........
T Consensus 263 ----w~~-~------------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~----------- 311 (376)
T 3q7m_A 263 ----WKR-E------------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLL----------- 311 (376)
T ss_dssp ----EEE-C------------CCCEEEEEE--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSCC-----------
T ss_pred ----eec-c------------CCCCCCceE--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCcc-----------
Confidence 222 0 012233333 24445544 458999999986 666555442111110
Q ss_pred ceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 385 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
..... .+..|+.++.+|.|+++|..+++.+ .....
T Consensus 312 ---~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~-~~~~~ 346 (376)
T 3q7m_A 312 ---TSPVL--YNGNLVVGDSEGYLHWINVEDGRFV-AQQKV 346 (376)
T ss_dssp ---CCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred ---cCCEE--ECCEEEEEeCCCeEEEEECCCCcEE-EEEec
Confidence 12222 2457888999999999999998544 44443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-05 Score=67.01 Aligned_cols=160 Identities=14% Similarity=0.037 Sum_probs=101.8
Q ss_pred cceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....++|++++.++++. . ++.|.++|+.+ ++....+.+ ..+ .....+++. +.++.++.-.++.+.++
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l-----~~~-~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKM-----DDS-YFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEEC-----CTT-CCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEec-----CCC-cceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 346789999987555554 3 68999999994 455554432 222 122345555 42555666668999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
|..+.+.. ..+.. . .-....+++||+.++++. .+.|.++|..+ .+.+..+.......+
T Consensus 92 D~~t~~v~----~~i~~-g--------------~~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p- 150 (266)
T 2iwa_A 92 DRRTLSNI----KNFTH-Q--------------MKDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHR- 150 (266)
T ss_dssp ETTTTEEE----EEEEC-C--------------SSSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEE-
T ss_pred ECCCCcEE----EEEEC-C--------------CCCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcc-
Confidence 99987654 33332 0 011234667888777664 48999999986 677777664332110
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+...+.+.|. +|+..+....++.|.+.|..+++.
T Consensus 151 ---------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 151 ---------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp ---------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE
T ss_pred ---------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE
Confidence 0001577888 776666666688999999998844
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.4e-05 Score=67.07 Aligned_cols=238 Identities=11% Similarity=0.126 Sum_probs=128.4
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (501)
.....++|+++|+++++-..++.|..||..+... ..+. -.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~----------------------------~~~~-~~----------- 71 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----------------------------IHAT-VE----------- 71 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE----------------------------EEEE-CS-----------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE----------------------------EEEe-CC-----------
Confidence 4578899999999777666788998888664311 1111 11
Q ss_pred ccceeEEEEeecCCCCEEEEeeCC-C-eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee
Q 010801 113 EEKINRVRWCAAPNGSMFILSTND-K-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (501)
Q Consensus 113 ~~~V~~v~~~~~~~~~~l~s~s~d-~-~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (501)
.....+++. ++++++++.... + .|..++..+++.......
T Consensus 72 -~~p~gia~~--~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~----------------------------------- 113 (306)
T 2p4o_A 72 -GKVSGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTVETLLTL----------------------------------- 113 (306)
T ss_dssp -SEEEEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred -CCceeEEEc--CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-----------------------------------
Confidence 447888886 778765554432 2 466666666664332210
Q ss_pred ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeec--CCCCCCCcc
Q 010801 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLT 267 (501)
Q Consensus 191 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~ 267 (501)
........++..+++..+++. .++.|..+|.......+..... ........-
T Consensus 114 -------------------------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 114 -------------------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp -------------------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred -------------------------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 001112233334455444444 5788888887632111110000 000011111
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccC-CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
.....+ +|++..++++-...+.|..+|+.. ++.. ....+.. ......+++.++|++.++..
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECB
T ss_pred CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeC
Confidence 234555 788723445555678999999875 3211 1122211 12467889999998766654
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc---CCCcEEEEEeCCC
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSN 406 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~s~~~dg 406 (501)
.+.|.++|.. ++............ ..++++|. |+++.|+..+..+
T Consensus 231 ~~~~V~~~~~~--G~~~~~~~~~~~~~-------------~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 231 IYNSVVRIAPD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTCCEEEECTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCeEEEECCC--CCEEEEeecccccC-------------CceEEEEecccCCCCEEEEECCCC
Confidence 3889999863 54422111111100 01689998 8877666655433
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9.2e-05 Score=63.87 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=101.8
Q ss_pred eeeEeecCCcccceEEEEecCCCCEEEEE-cCC--eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
+.++++..........+.|+ ++.++.+. .+| .|+.+|+.+ ++....+.+ ... ..--.++. ++.++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l-----~~~-~FgeGit~--~g~~ly~ 101 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL-----GKR-YFGEGISD--WKDKIVG 101 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC-----CTT-CCEEEEEE--ETTEEEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEec-----CCc-cceeEEEE--eCCEEEE
Confidence 34455522223344788898 66555554 555 999999994 444444322 111 11123444 3425555
Q ss_pred EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCcee
Q 010801 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 363 (501)
Q Consensus 285 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~ 363 (501)
..-.++.+.+||..+.+.. ..+.. .-....+++|++.|+.++ .+.|.++|..+ .+.+.
T Consensus 102 ltw~~~~v~v~D~~t~~~~----~ti~~----------------~~eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~ 160 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQV----RSFNY----------------DGEGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVR 160 (262)
T ss_dssp EESSSSEEEEEETTTCCEE----EEEEC----------------SSCCCCEEECSSCEEECCSSSEEEEECTTT-CSEEE
T ss_pred EEeeCCEEEEEECccCcEE----EEEEC----------------CCCceEEecCCCEEEEECCCCeEEEEcCCC-CeEEE
Confidence 5556899999999987654 33333 112234457788777664 48899999986 77777
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++.......+ +...+.+.|. +|+..+..-.++.|.+.|.++++.
T Consensus 161 ~I~V~~~g~~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 161 TITVTAHGEE----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp EEECEETTEE----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred EEEeccCCcc----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE
Confidence 7765432110 0001357776 777666666788999999999843
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-05 Score=77.30 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=61.2
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~ 368 (501)
|.|..||+.+++.. +.. . +..++....+..++..++.++ ++.+++||.++ ++.+..+...
T Consensus 457 g~l~A~D~~tG~~~------W~~-~-----------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVAQKAA------WSV-E-----------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTTTEEE------EEE-E-----------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cEEEEEeCCCCcEE------eec-C-----------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCC
Confidence 77999999988643 222 0 123345555677787877775 59999999997 8988888755
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eC----------------CCeEEEEecC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SY----------------SNLLRIFSHG 414 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~----------------dg~i~iwd~~ 414 (501)
..... .-+.+..+|+.+++. +. .+.+..|.+.
T Consensus 518 ~~~~~--------------~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 518 TGVVA--------------APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp SCCCS--------------CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCccc--------------CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 43321 357777888755432 22 3677777776
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00027 Score=63.96 Aligned_cols=161 Identities=11% Similarity=0.097 Sum_probs=88.5
Q ss_pred ceEEEEecCCCCEEEEE-cCC--eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 220 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
....+++.++|+++++. ... .|..+|.. .+........ . .......++..+.+ ..+++-..++.|..+|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 57789999999976665 332 46666766 3333332211 1 11223455555554 5555544688999999
Q ss_pred ccCCcccccccceeecccccC-CCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCc--eeEeeccccc
Q 010801 297 MRQSALCDHSARILRDAAESH-GSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP--VATFKIHEHL 371 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~--~~~~~~~~~~ 371 (501)
...++... ..... .... ... +.-...+.+ +|++++|..++ .+.|..|++...++. ...+.....+
T Consensus 145 ~~~~~~~v---~~~~~-~~~~~~~~----~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P 214 (306)
T 2p4o_A 145 VVQPSGSI---WLEHP-MLARSNSE----SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI 214 (306)
T ss_dssp TTTTEEEE---EEECG-GGSCSSTT----CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC
T ss_pred CCCCcEeE---EEECC-cccccccc----CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC
Confidence 76542110 00000 0000 000 000123444 88888777664 389999998632221 1112111111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
..++++++|+++++....+.|.+++..
T Consensus 215 ----------------~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 215 ----------------DDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp ----------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred ----------------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 479999999988877778899999865
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=77.62 Aligned_cols=218 Identities=11% Similarity=0.060 Sum_probs=113.7
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
.+.++...+++. +..+ .+ |..+|.. +..... ............+. + ..+.+++.++.|..+|..
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~~-g~~~~~--------~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~ 125 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINPD-GTEKWR--------FDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD 125 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECCC-GGGGGG--------SCC-----CCEEEE-T--TEEEEECTTSEEEEECTT
T ss_pred cccceEEecCCc-EEEecCc--EEEECCC-CcEEEE--------EECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC
Confidence 345566666664 4445 44 8888753 332221 11111112223333 3 457778889999999987
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 378 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 378 (501)
++.. ..... ....+.++...+++.+++...++.|..+|.. ++.+..+......+
T Consensus 126 -g~~~----~~~~~-------------~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~------ 179 (330)
T 3hxj_A 126 -GTEK----WRFKT-------------KKAIYATPIVSEDGTIYVGSNDNYLYAINPD--GTEKWRFKTNDAIT------ 179 (330)
T ss_dssp -SCEE----EEEEC-------------SSCCCSCCEECTTSCEEEECTTSEEEEECTT--SCEEEEEECSSCCC------
T ss_pred -CCEE----EEEcC-------------CCceeeeeEEcCCCEEEEEcCCCEEEEECCC--CCEeEEEecCCCce------
Confidence 5432 11111 1234566677778876665555899999975 55555554332222
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-
Q 010801 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA- 457 (501)
Q Consensus 379 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~- 457 (501)
.++...+++.+++.. +.|..+| .+++. ..........+.++...+ ++. +..+..++.
T Consensus 180 ---------~~~~~d~~g~l~v~t---~~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~--~g~------l~v~t~~~gl 237 (330)
T 3hxj_A 180 ---------SAASIGKDGTIYFGS---DKVYAIN-PDGTE-KWNFYAGYWTVTRPAISE--DGT------IYVTSLDGHL 237 (330)
T ss_dssp ---------SCCEECTTCCEEEES---SSEEEEC-TTSCE-EEEECCSSCCCSCCEECT--TSC------EEEEETTTEE
T ss_pred ---------eeeEEcCCCEEEEEe---CEEEEEC-CCCcE-EEEEccCCcceeceEECC--CCe------EEEEcCCCeE
Confidence 467777788755544 7889999 66533 344444445566666654 333 334444333
Q ss_pred eeccccCCcc-cccccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 458 HENSSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 458 ~iw~~~~~~~-~~~~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
..++...... ........+..+...+++.+.+...+++++.|+
T Consensus 238 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 238 YAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred EEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC
Confidence 3333221111 111111222334555566554444455788775
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00046 Score=64.71 Aligned_cols=172 Identities=10% Similarity=0.008 Sum_probs=98.6
Q ss_pred eEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-CeEEEEEc
Q 010801 221 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM 297 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~~wd~ 297 (501)
...+++.+.+..|+.+ ..+.|.+.+++ +.....+ +.........++++|.+..++.+-... +.|..+++
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 3567887755555544 67788888887 3322221 122224568999999772444444444 78888887
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
...... .+... .-.....++++|++..|..++ . +.|..+|+. +.....+.......+
T Consensus 233 dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~P-- 291 (386)
T 3v65_B 233 DGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPHP-- 291 (386)
T ss_dssp TSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSSE--
T ss_pred CCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCCc--
Confidence 653221 11111 013468999998877777664 3 788888875 333333321111110
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
..+++ ..+.++++-...+.|..++..+++.. ..+.........+++
T Consensus 292 ------------~giav-~~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 292 ------------FAITV-FEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 337 (386)
T ss_dssp ------------EEEEE-ETTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred ------------eEEEE-ECCEEEEeeCCCCeEEEEECCCCcce-EEEccCCCCCceEEE
Confidence 46777 34566667777889999986666444 444433333334444
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=4e-05 Score=77.56 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=100.9
Q ss_pred EEEecCCCCEEEEE-cCC-------------------eEEEEECCCCCeeeeeeecCCCCCCC--cccceEEEEEecCCC
Q 010801 223 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYC 280 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~ 280 (501)
.+++.|+..+++.+ .++ .|..+|.++++...+. ...+...-. ...+.....+..+|
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~-~~~~~~~wd~~~~~~~~~~d~~~~G- 311 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY-QVTPGDSWDFTATQQITLAELNIDG- 311 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe-ecCCCccccccCCCCcEEEEeccCC-
Confidence 46777777777776 554 4888998855544432 111100000 11223333334466
Q ss_pred c---EEEEEeCCCeEEEEEccCCcccccccc---eeeccc----ccC--------CCcc--eeeecc--cceeEEEEeeC
Q 010801 281 N---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAA----ESH--------GSKS--FFTEII--ASISDIKFAND 338 (501)
Q Consensus 281 ~---~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~----~~~--------~~~~--~~~~h~--~~i~~~~~sp~ 338 (501)
+ .++.++.+|.+.++|..+++.+..... .+...- ..+ .... ...+.. ..-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 4 688899999999999999976521000 000000 000 0000 000000 00123677777
Q ss_pred CCEEEEE------------------------------------cC-CcEEEEEeeCCCCceeEeeccccccccccccCCC
Q 010801 339 GQHLLSR------------------------------------DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN 381 (501)
Q Consensus 339 ~~~l~~~------------------------------------~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (501)
...+... .. +.|+.||+.+ ++.+-+.......
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~---------- 460 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW---------- 460 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC----------
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC----------
Confidence 6655431 12 6788899886 7766655543321
Q ss_pred CCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 382 ~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
....+...+.+++.++.||.++.||.++++.+ ..++..
T Consensus 461 ------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l-~~~~~~ 498 (668)
T 1kv9_A 461 ------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL-WQFEAQ 498 (668)
T ss_dssp ------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECS
T ss_pred ------cCceeEeCCCEEEEECCcccchhhhhhcChhh-eEecCC
Confidence 22344446778899999999999999999554 455443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00076 Score=62.22 Aligned_cols=173 Identities=10% Similarity=0.013 Sum_probs=99.8
Q ss_pred ceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-CeEEEEE
Q 010801 220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~~wd 296 (501)
....+++.+.+..|.. - ..+.|.+.+++ +...... +...-.....++++|.+..++.+-... +.|..++
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 3457888875555544 4 67899999988 3322221 112224568999999762555554445 7888888
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeecccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
+...... ..... .-.....++++|++..|..++ . +.|..+|+. +.....+.......+
T Consensus 189 ~dG~~~~----~~~~~-------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~P- 248 (349)
T 3v64_C 189 MDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPHP- 248 (349)
T ss_dssp TTSCSCE----ESCCS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSSE-
T ss_pred CCCCCcE----EEEEC-------------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCCc-
Confidence 7653221 11111 013568999999887777664 2 788888875 333333221111100
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
..+++. ++.++++-...+.|..++..+++.. ..+.........+++
T Consensus 249 -------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 249 -------------FAITVF-EDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 294 (349)
T ss_dssp -------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred -------------eEEEEE-CCEEEEecCCCCeEEEEEccCCCcc-EEeccCCCCCceEEE
Confidence 467773 5566666667888988886666444 344333333334443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-05 Score=65.47 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=102.6
Q ss_pred eeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE
Q 010801 208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 286 (501)
+.++++...-......+.|+. +.++.+. .+|.|+.+|+.+ ++....+ +.+ ...--.+++ ++.++++..
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~T-gkv~~~~-l~~------~~FgeGit~--~g~~Ly~lt 112 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLES-AQPVWME-RLG------NIFAEGLAS--DGERLYQLT 112 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSC-SSCSEEE-ECT------TCCEEEEEE--CSSCEEEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCC-CcEEeEE-CCC------CcceeEEEE--eCCEEEEEE
Confidence 344555223334456888873 4455555 888999999994 4444432 221 111123444 443566666
Q ss_pred eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEe
Q 010801 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 287 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~ 365 (501)
-.++.+.+||..+.+.. ..+.. ... ...+++|++.|+.++ .+.|+++|..+ .+.+.++
T Consensus 113 w~~~~v~V~D~~Tl~~~----~ti~~--------------~~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I 171 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRE----RTTRY--------------SGE--GWGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAV 171 (268)
T ss_dssp SSSCEEEEEETTTTEEE----EEEEC--------------SSC--CCCEEEETTEEEEECSSSEEEEECTTT-CCEEEEE
T ss_pred ccCCEEEEEECCcCcEE----EEEeC--------------CCc--eeEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEE
Confidence 67899999999988655 33333 111 223346788777664 48999999986 7777777
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
.......+ +...+.+.|. +|+..+..-.++.|.+.|.++++.
T Consensus 172 ~V~~~g~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 172 QVKLRGQP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTV 213 (268)
T ss_dssp ECEETTEE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBE
T ss_pred EeCCCCcc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcE
Confidence 65433211 0011467777 777666665688999999999843
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-05 Score=64.98 Aligned_cols=196 Identities=10% Similarity=0.051 Sum_probs=113.5
Q ss_pred cceeEEEEeecCCCCEEEEeeCCC--eEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
.-...+.|+ ++.++.+.+.+| .|+.+|+.+++........
T Consensus 43 ~ftqGL~~~---~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----------------------------------- 84 (262)
T 3nol_A 43 AFTEGFFYR---NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG----------------------------------- 84 (262)
T ss_dssp CEEEEEEEE---TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------------------------------
T ss_pred cccceEEEE---CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------------------------------
Confidence 456788885 566677777765 8999999999876644221
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
.........+++..|.. . .++.+.+||..+ .+.+..+. ..+ .+
T Consensus 85 ---------------------------~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~~~ti~-----~~~-eG- 129 (262)
T 3nol_A 85 ---------------------------KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQVRSFN-----YDG-EG- 129 (262)
T ss_dssp ---------------------------TTCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCEEEEEE-----CSS-CC-
T ss_pred ---------------------------CccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcEEEEEE-----CCC-Cc-
Confidence 11111112223445544 4 799999999994 44455432 222 11
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeec-ccceeEEEEeeCCCEEEEEc-C
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
..+.+++ ..|+.+..++.|.++|..+.+.. ..+.. ... +. -..++.+.|. +|+..+... .
T Consensus 130 ---~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~----~~I~V-~~~--------g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 130 ---WGLTHND-QYLIMSDGTPVLRFLDPESLTPV----RTITV-TAH--------GEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp ---CCEEECS-SCEEECCSSSEEEEECTTTCSEE----EEEEC-EET--------TEECCCEEEEEEE-TTEEEEEETTS
T ss_pred ---eEEecCC-CEEEEECCCCeEEEEcCCCCeEE----EEEEe-ccC--------CccccccceeEEE-CCEEEEEEccC
Confidence 2333566 55665566788999999887654 22222 000 00 1234567776 776555543 4
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
+.|.+.|.++ ++.+..+....-.. ........... .+.++|+|+++.|...+.
T Consensus 192 ~~I~vIDp~t-G~V~~~Id~~~L~~-~~~~~~~~~~v--lNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPET-GKVTGIIDLNGILA-EAGPLPSPIDV--LNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTT-CBEEEEEECTTGGG-GSCSCCSSCCC--EEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCC-CcEEEEEECCcCcc-ccccccCcCCc--eEEEEEcCCCCEEEEECC
Confidence 8999999986 88888876532110 00000001111 178999998776665554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00014 Score=62.09 Aligned_cols=209 Identities=9% Similarity=0.079 Sum_probs=120.0
Q ss_pred ceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCC--CeEEEEeccccceeeeeccCCCccccccccc
Q 010801 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (501)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d--~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (501)
.++.+.++ .|.+. +-...+.|+ ++.++.+.+.+ ..|+.+|+.+++........
T Consensus 8 ~~~v~~~~-phd~~----------~ftqGL~~~---~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----------- 62 (243)
T 3mbr_X 8 GYRVVKRY-PHDTT----------AFTEGLFYL---RGHLYESTGETGRSSVRKVDLETGRILQRAEVP----------- 62 (243)
T ss_dssp CEEEEEEE-ECCTT----------CCEEEEEEE---TTEEEEEECCTTSCEEEEEETTTCCEEEEEECC-----------
T ss_pred ceEEEEEc-CCCCc----------cccccEEEE---CCEEEEECCCCCCceEEEEECCCCCEEEEEeCC-----------
Confidence 45566666 67643 667889996 35666666654 48999999999876654221
Q ss_pred ccccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEE
Q 010801 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWN 245 (501)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd 245 (501)
.+ ..-..++. .+..|. .. .++.+.+||
T Consensus 63 ------------------------------------------------~~-~fgeGi~~--~~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 63 ------------------------------------------------PP-YFGAGIVA--WRDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp ------------------------------------------------TT-CCEEEEEE--ETTEEEEEESSSSEEEEEE
T ss_pred ------------------------------------------------CC-cceeEEEE--eCCEEEEEEeeCCEEEEEE
Confidence 00 00012233 234444 45 899999999
Q ss_pred CCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeee
Q 010801 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
.. ..+.+..+. ..+ .+ ..++ +++ ..|+.+..++.|.++|..+.+.. +.++. ...+..
T Consensus 92 ~~-tl~~~~ti~-----~~~-~G--wglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V-~~~g~~------ 148 (243)
T 3mbr_X 92 LA-TLTPRARFR-----YPG-EG--WALT--SDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKV-TAGGRP------ 148 (243)
T ss_dssp TT-TTEEEEEEE-----CSS-CC--CEEE--ECS-SCEEEECSSSEEEEECTTTCCEE----EEEEC-EETTEE------
T ss_pred CC-cCcEEEEEe-----CCC-Cc--eEEe--eCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEE-ccCCcc------
Confidence 98 455555432 222 11 3443 566 55555567899999999987654 22322 000000
Q ss_pred cccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccc--cCCCCCcceeeEEEEcCCCcEEEEE
Q 010801 326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATG 402 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~s~ 402 (501)
-..++.+.+. +|+..+..- .+.|.+.|.++ ++.+..+....-.. .... ....+.. +.++++|+++.|...
T Consensus 149 -~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~-~~~~~~~~~~~vl---NGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 149 -LDNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVP-DADALTDSTNDVL---NGIAFDAEHDRLFVT 221 (243)
T ss_dssp -CCCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGST-TTTSCCCTTSSCE---EEEEEETTTTEEEEE
T ss_pred -cccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCcc-ccccccCCcCCce---EEEEEcCCCCEEEEE
Confidence 0234566655 676555443 48999999987 88888876442110 0000 0011122 799999976655544
Q ss_pred eC
Q 010801 403 SY 404 (501)
Q Consensus 403 ~~ 404 (501)
+.
T Consensus 222 GK 223 (243)
T 3mbr_X 222 GK 223 (243)
T ss_dssp ET
T ss_pred CC
Confidence 43
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00029 Score=72.42 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=25.6
Q ss_pred ceEEEEEc-cCCCEEEEEec-CC----cEEEEEecCC-c
Q 010801 34 IVSAIEFD-KTGDYLAVGDR-GG----RVILFETVGG-K 65 (501)
Q Consensus 34 ~v~~v~~s-~~g~~latg~~-dg----~i~iw~~~~~-~ 65 (501)
.+...+|| |||++||.+.. +| +|+++|+.++ +
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~ 213 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ 213 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE
Confidence 67889999 99999986543 22 5999999987 5
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00029 Score=60.22 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=101.9
Q ss_pred eeeEeecCCcccceEEEEecCCCCEEEEE-cC--CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
+.++.+..........+.|++ +.++.+. .+ ..|+.+|+.+ ++....+. +..+. .--.++.. +.+++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~-----l~~~~-fgeGi~~~--~~~ly~ 79 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAE-----VPPPY-FGAGIVAW--RDRLIQ 79 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEE-----CCTTC-CEEEEEEE--TTEEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEe-----CCCCc-ceeEEEEe--CCEEEE
Confidence 344555223334566899986 4455554 43 5999999994 45554432 22211 11233443 326666
Q ss_pred EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCcee
Q 010801 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 363 (501)
Q Consensus 285 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~ 363 (501)
..-.++.+.+||..+.+.. ..+.. .. ....+.++++.|+.++ .+.|.++|..+ .+.+.
T Consensus 80 ltw~~~~v~v~D~~tl~~~----~ti~~--------------~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~ 138 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLTPR----ARFRY--------------PG--EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVG 138 (243)
T ss_dssp EESSSSEEEEEETTTTEEE----EEEEC--------------SS--CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEE
T ss_pred EEeeCCEEEEEECCcCcEE----EEEeC--------------CC--CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEE
Confidence 6667999999999987655 33333 11 2233446777666654 48999999986 77777
Q ss_pred EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++.......+ +..++.+.|. +|+..+..-.+..|.+.|.++++.
T Consensus 139 ~I~V~~~g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 139 SIKVTAGGRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp EEECEETTEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred EEEEccCCcc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence 7765432211 0011456665 777666665688999999999843
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.001 Score=68.93 Aligned_cols=248 Identities=11% Similarity=0.037 Sum_probs=130.6
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeee-------cCCCCCCCcccceEEEEEecCCCcEEEEEeCCC
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 290 (501)
...|.++...++|.+.+....+-|.++|... ........ .......-....|.++...++| .+ -.|+.++
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~l-Wigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQ-NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-NI-WIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTC-C---------CEEECBCSSTTSBSSSCEEEEEECSSC-CE-EEEEBSS
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCC-CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-CE-EEEecCC
Confidence 3568888888888655544656788888873 32211100 0000011234678999999887 54 4566677
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccc
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
-|..++...... ..+.. ........ ......|.++...++|.+.+...++-|..||..+ + ....+.....
T Consensus 334 Gl~~~~~~~~~~-----~~~~~-~~~~~~~~--~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~ 403 (781)
T 3v9f_A 334 GINFISNAPPTF-----HTWSY-SPTQMNES--SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENRE 403 (781)
T ss_dssp CEEEECSSCCSC-----EEEC-----CCCSS--CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----
T ss_pred eEEEeCCCCCcc-----eeecc-CccccccC--CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCC
Confidence 788888765432 11111 00000000 0012468899888888766554456788888653 2 1222211000
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe---cccCcccceeeccCCccccCccc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---AGKNENRKPILQAAPRARRSSLS 447 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 447 (501)
. .... |.++...++|.+.+ |+.++-|..++..+++. ..+. .....|.++...+ ++.+
T Consensus 404 ~--------~~~~---v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~--~g~l---- 463 (781)
T 3v9f_A 404 L--------LSNS---VLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDK--NKKI---- 463 (781)
T ss_dssp C--------CCSB---EEEEEECTTSCEEE-EETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECT--TSEE----
T ss_pred C--------CCcc---eEEEEECCCCCEEE-EeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECC--CCCE----
Confidence 0 0111 26788888887655 66666788888776522 2221 1223455554443 4443
Q ss_pred eeeeecccceeeccccC-Cccccc------ccCCCeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 448 NLTRGLYRQAHENSSSG-HHELSY------NLSSKLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 448 ~l~~~~~~~~~iw~~~~-~~~~~~------~~~~~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.+ |...|...++... ...... .....|.++...++|.+.+....++++.|+
T Consensus 464 -wi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 464 -WI-GTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT 521 (781)
T ss_dssp -EE-EETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred -EE-EECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence 22 2233334442221 111111 114678999999999877766567888775
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00085 Score=58.19 Aligned_cols=219 Identities=11% Similarity=0.157 Sum_probs=126.0
Q ss_pred cceeEEEEeecCCCC-EEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceecc
Q 010801 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (501)
+.+..++|. |+++ ++++...++.|...|.. ++.......
T Consensus 27 ~~lSGla~~--~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l------------------------------------- 66 (255)
T 3qqz_A 27 NNISSLTWS--AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL------------------------------------- 66 (255)
T ss_dssp SCEEEEEEE--TTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-------------------------------------
T ss_pred cCcceeEEe--CCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-------------------------------------
Confidence 669999998 5544 45556678889888887 554443211
Q ss_pred CcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe--eeeeeecCCCCCCCcccc
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 269 (501)
.+ ......+++.+++.++++. .++.+.++++..... ......... ........
T Consensus 67 ----------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g 122 (255)
T 3qqz_A 67 ----------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCG 122 (255)
T ss_dssp ----------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSC
T ss_pred ----------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCC
Confidence 11 2346678888888877777 888999999875543 222222110 01233556
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE-EEcC-
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY- 347 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-~~~~- 347 (501)
.-.++|+|.+ +.|.++.+.....+|.+. +........+... ..-.. ..+...+.+++++|....+. ....
T Consensus 123 ~EGLA~d~~~-~~L~va~E~~p~~i~~~~-g~~~~~~l~i~~~-~~~~~-----~~~~~d~S~l~~dp~tg~lliLS~~s 194 (255)
T 3qqz_A 123 FEGLAYSRQD-HTFWFFKEKNPIEVYKVN-GLLSSNELHISKD-KALQR-----QFTLDDVSGAEFNQQKNTLLVLSHES 194 (255)
T ss_dssp CEEEEEETTT-TEEEEEEESSSEEEEEEE-STTCSSCCEEEEC-HHHHH-----TCCSSCCCEEEEETTTTEEEEEETTT
T ss_pred cceEEEeCCC-CEEEEEECcCCceEEEEc-ccccCCceeeecc-hhhcc-----ccccCCceeEEEcCCCCeEEEEECCC
Confidence 7899999998 666666665555566554 2111001122111 00000 00124579999999755444 4433
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
..+..+|.. ++.+..+.-....-. + ...+.....++|.++|++.++ ++-+.++.+.-
T Consensus 195 ~~L~~~d~~--g~~~~~~~L~~g~~~----l--~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 195 RALQEVTLV--GEVIGEMSLTKGSRG----L--SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TEEEEECTT--CCEEEEEECSTTGGG----C--SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CeEEEEcCC--CCEEEEEEcCCccCC----c--ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 888888875 666665543321100 0 001111258999999985555 77777776654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00012 Score=63.09 Aligned_cols=196 Identities=11% Similarity=0.045 Sum_probs=113.3
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
.-...+.|+ ++.++.+.+.+|.|+++|+++++..... ..
T Consensus 55 ~ftqGL~~~---~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~------------------------------------- 93 (268)
T 3nok_A 55 AFTQGLVFH---QGHFFESTGHQGTLRQLSLESAQPVWME-RL------------------------------------- 93 (268)
T ss_dssp CCEEEEEEE---TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-------------------------------------
T ss_pred cccceEEEE---CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-------------------------------------
Confidence 446788885 4667777788899999999998865432 11
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.. ..-..+++.. +++.+.. .++.+.+||.. ..+.+..+.. .+. + ..
T Consensus 94 ----------------------~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~-Tl~~~~ti~~-----~~e-G--wG 140 (268)
T 3nok_A 94 ----------------------GN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGM-PPQRERTTRY-----SGE-G--WG 140 (268)
T ss_dssp ----------------------TT-CCEEEEEECS-SCEEEEESSSCEEEEEETT-TTEEEEEEEC-----SSC-C--CC
T ss_pred ----------------------CC-cceeEEEEeC-CEEEEEEccCCEEEEEECC-cCcEEEEEeC-----CCc-e--eE
Confidence 10 0111234432 2344445 89999999999 4555554422 221 1 33
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++ +++ +.|+.+..++.|.++|..+.+.. +.+.. ...+. .-..++.+.|. +|+..+... .+.|.
T Consensus 141 Lt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~----~~I~V-~~~g~-------~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 141 LC--YWN-GKLVRSDGGTMLTFHEPDGFALV----GAVQV-KLRGQ-------PVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EE--EET-TEEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------ECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred Ee--cCC-CEEEEECCCCEEEEEcCCCCeEE----EEEEe-CCCCc-------ccccccccEEe-CCEEEEEECCCCeEE
Confidence 43 566 66666667999999999887654 22222 00000 01235667776 776555443 48999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEE
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG 402 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~ 402 (501)
+.|.++ ++.+..+....-............... +.++++|+++ ++++|
T Consensus 205 vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEE
T ss_pred EEeCCC-CcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeC
Confidence 999986 888887764321000000000011111 7899999755 44555
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00023 Score=67.80 Aligned_cols=183 Identities=9% Similarity=0.056 Sum_probs=90.8
Q ss_pred eEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCc-EEEEEeCCCeEEEEEc
Q 010801 221 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDM 297 (501)
Q Consensus 221 v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~wd~ 297 (501)
...++++| ++.++++- .++.|..++.. ......... ... ......++|+|++ + ++++-...+.|..++.
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~-----~~~-~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFT-----IQD-SGWEFHIQFHPSG-NYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEE-----CSS-SSCCEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEE-----cCC-CCcceeEEEcCCC-CEEEEEECCCCEEEEEeC
Confidence 45678999 67666666 78899999988 333322211 111 2346899999999 7 5555556789999887
Q ss_pred cCCcccccccceeecccccCCCcce---eeecccceeEEEEe--------eCCCEEEEEcC-CcEEEEEeeCCCCceeEe
Q 010801 298 RQSALCDHSARILRDAAESHGSKSF---FTEIIASISDIKFA--------NDGQHLLSRDY-MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~s--------p~~~~l~~~~~-~~i~lwd~~~~~~~~~~~ 365 (501)
............+.+.........- ......+-..++.. ++|.+.++-.. +.|+.++. .+. +..+
T Consensus 300 d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~--~G~-v~~~ 376 (430)
T 3tc9_A 300 DWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP--QGR-VTTF 376 (430)
T ss_dssp ETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT--TSE-EEEE
T ss_pred CcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC--CCc-EEEE
Confidence 6421000001122220000000000 00011111145553 23544444333 78888873 243 3333
Q ss_pred ecccc-ccccccc--cCCCCCcceeeEEEEcC-CCcEEEEEeCCCeEEEEecC
Q 010801 366 KIHEH-LRPKLCD--LYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 366 ~~~~~-~~~~~~~--~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 414 (501)
.+... ......+ ............++++| ++.++++-..+..|+.++++
T Consensus 377 ~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 377 AGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 33210 0000000 00000111226899999 57777776677889888765
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0006 Score=64.88 Aligned_cols=182 Identities=10% Similarity=0.051 Sum_probs=93.9
Q ss_pred ceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCee-eeeeecCCCCCCCcccceEEEEEecCCCc-EEEEEeCCCeEEEE
Q 010801 220 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLV 295 (501)
Q Consensus 220 ~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~~~~~dg~i~~w 295 (501)
....+++.| ++.++++- .++.|+.+|... +.. ..... .. ....-..++|+|++ + ++++-...+.|+.+
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~-----~~-~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~ 300 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVM-----MD-TKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV 300 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEEEE-----CS-CCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEEec-----cC-CCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence 345678888 66666565 788999999873 333 22211 11 11223579999999 7 45555557899998
Q ss_pred EccC--CcccccccceeecccccCCCcce--eeecccceeEEEE---------eeCCCEEEEEcC-CcEEEEEeeCCCCc
Q 010801 296 DMRQ--SALCDHSARILRDAAESHGSKSF--FTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP 361 (501)
Q Consensus 296 d~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~i~~~~~---------sp~~~~l~~~~~-~~i~lwd~~~~~~~ 361 (501)
+... +... ....+.+.........- ....-.....+++ .++|.+.++-.. +.|+.++. .+ .
T Consensus 301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~--~G-~ 375 (433)
T 4hw6_A 301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP--EG-R 375 (433)
T ss_dssp EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT--TS-E
T ss_pred eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC--CC-C
Confidence 8753 2111 01122220000000000 0000123567888 566666555443 78888874 24 3
Q ss_pred eeEeeccccc-cccccc--cCCCCCcceeeEEEEc-CCCcEEEEEeCCCeEEEEecC
Q 010801 362 VATFKIHEHL-RPKLCD--LYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 362 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~s-~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+.++.+.... .....+ +...........++++ ++|.++++-..+++|+.++++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4444332110 000000 0000011122689999 677777777778889888765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00024 Score=70.33 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=38.9
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
+.|..||+.+ ++.+-++...... ....+...+..++.++.||.|+.||.++++.+ ..++.
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l-w~~~~ 503 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKEL-WNFKM 503 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCCCEE-EEEeC
Confidence 6788888876 6666555433221 12222234567777999999999999999655 44543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0063 Score=62.98 Aligned_cols=239 Identities=9% Similarity=0.019 Sum_probs=128.6
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCC---CCCCcccceEEEEEecCCCcEEEEEeCCCeEEE
Q 010801 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~ 294 (501)
...|.++...++|.+.+...++-|..++... .. ...+...+. ...-....|.++...++| ++ -.|+.++-|..
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~l-Wigt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGINFISNAP-PT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQG-KL-WIGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEEEECSSC-CS-CEEEC----CCCSSCCSSSCEEEEEECTTS-CE-EEEEBSSCEEE
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEEEeCCCC-Cc-ceeeccCccccccCCCCCcceEEEEEcCCC-CE-EEEeCCCcEEE
Confidence 4578899888888766555777888888773 22 222111000 011123568999988887 54 45666666888
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccccccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
||..++... .+.. .. ......|.++...++|.+.+...++.|..+|..+ ++ ...+... ..
T Consensus 388 ~~~~~~~~~-----~~~~-~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~-~~--- 447 (781)
T 3v9f_A 388 FENGKRVAI-----YNKE-NR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-KK-FQIIELE-KN--- 447 (781)
T ss_dssp EETTEEEEE-----CC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-CE-EEECCST-TT---
T ss_pred EECCCCeEE-----EccC-CC--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-Cc-EEEeccC-CC---
Confidence 997654321 1110 00 0113568888888888776654446788888754 32 3333211 00
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc-----cCcccceeeccCCccccCcccee
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
.... +.++...++|++.+ |+. +-|..|+..+++.. ...... ...+.++...+ ++.+
T Consensus 448 -----~~~~---v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~--~g~l------ 508 (781)
T 3v9f_A 448 -----ELLD---VRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDS--EGRF------ 508 (781)
T ss_dssp -----CCCC---EEEEEECTTSEEEE-EET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECT--TCCE------
T ss_pred -----CCCe---EEEEEECCCCCEEE-EEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcC--CCCE------
Confidence 0011 26788888887655 444 45888998766432 111111 23444444433 4443
Q ss_pred eeecc-cceeeccccCC-cccc---cc-cCCCeEEEEEccCCCEEEEeeCCeE-EEEe
Q 010801 450 TRGLY-RQAHENSSSGH-HELS---YN-LSSKLLHLAWHPTTNLIACANGNSL-FFHY 500 (501)
Q Consensus 450 ~~~~~-~~~~iw~~~~~-~~~~---~~-~~~~i~~~~~sp~~~~la~~~~~~~-~i~~ 500 (501)
-.|.. .|...++.... .... .+ ....|.++...++|.+.+... +++ +.|+
T Consensus 509 Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 509 WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 22222 33333322211 1110 11 235788999888888665544 777 7764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0008 Score=58.36 Aligned_cols=208 Identities=13% Similarity=0.074 Sum_probs=119.9
Q ss_pred CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 263 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
+++-...+..++|+|++..++++...++.|...|.. ++.. +.+.. .+ ......+++.+++.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~----~~i~l-----------~g-~~D~EGIa~~~~g~~~ 84 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI----RTIPL-----------DF-VKDLETIEYIGDNQFV 84 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE----EEEEC-----------SS-CSSEEEEEECSTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE----EEEec-----------CC-CCChHHeEEeCCCEEE
Confidence 455556799999999874567778889999999987 5433 22211 00 1357788899999877
Q ss_pred EEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC--CCcc
Q 010801 343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV--GSAG 419 (501)
Q Consensus 343 ~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~ 419 (501)
++.. ++.+.++++...+. +........... ....+ .+...++|+|+++.|.++.......||.++. ....
T Consensus 85 vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~---~~~~N---~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSE-VKILKKIKIPLQ---ESPTN---CGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp EEETTTTEEEEEEECTTCC-EEEEEEEECCCS---SCCCS---SCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred EEECCCCcEEEEEcCCCCe-eeeeeeeccccc---ccccc---CCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence 7654 48899999875332 221111110000 00011 1126899999987777666655555555541 1011
Q ss_pred eEEEe-------cccCcccceeeccCCccccCccceeeeecccce-eeccccCCccccccc----------CCCeEEEEE
Q 010801 420 GITVE-------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNL----------SSKLLHLAW 481 (501)
Q Consensus 420 ~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~----------~~~i~~~~~ 481 (501)
...+. .+......+++.|. .+.+ ++.....+. .+.+..+........ -..-..|+|
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~-tg~l-----liLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQ-KNTL-----LVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAM 231 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETT-TTEE-----EEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred eeeecchhhccccccCCceeEEEcCC-CCeE-----EEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEE
Confidence 12221 12334677788775 4554 455444444 444444332221111 125578999
Q ss_pred ccCCCEEEEeeCCeEEEEe
Q 010801 482 HPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 482 sp~~~~la~~~~~~~~i~~ 500 (501)
.|+|+..+++-.|-+|+|.
T Consensus 232 d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 232 DASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp CTTCCEEEEETTTEEEEEE
T ss_pred CCCCCEEEEcCCceEEEEE
Confidence 9999866665567677775
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00063 Score=68.84 Aligned_cols=73 Identities=10% Similarity=0.035 Sum_probs=46.6
Q ss_pred eEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-CC-----CeE
Q 010801 221 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-----GFV 292 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-----g~i 292 (501)
..++++..++++++.| .+..+.+||..+. .-... ..+..... -.+++..+++ ++++.|+ .+ ..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~-----~~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPG-----PDMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGT-EEEEC-----CCCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCC-ceeEC-----CCCCcccc-ccceEEecCC-eEEEEeCcccCCcccccc
Confidence 3356778899999987 5678999998833 22221 01221111 1344566788 8888888 34 568
Q ss_pred EEEEccCCc
Q 010801 293 RLVDMRQSA 301 (501)
Q Consensus 293 ~~wd~~~~~ 301 (501)
.+||..+++
T Consensus 317 e~yd~~t~~ 325 (656)
T 1k3i_A 317 EVYSPSSKT 325 (656)
T ss_dssp EEEETTTTE
T ss_pred eEeCCCCCc
Confidence 999998753
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00063 Score=62.05 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=95.4
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC-------------CCCcccceEEEEEec-CCCcEE
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-------------MDDLTEVITSAEFHP-IYCNLL 283 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~~p-~~~~~l 283 (501)
....++++.++++++.++ .++.|..|+.. .+... .+...... .......+..+++.+ ++ + |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~-~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~-l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGP-NSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q-L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCT-TTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E-E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCC-CCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-c-E
Confidence 345678899999877888 88999999887 33222 11110000 001123578999998 55 5 4
Q ss_pred EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEcC---------------
Q 010801 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY--------------- 347 (501)
Q Consensus 284 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~~--------------- 347 (501)
+++...+.|..+|..++.. +.+.. ... . ........+++.+ +|++.++...
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-----~~~~~-~~~-~------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-----TQLAT-SVD-G------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-----EEEES-EET-T------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred EEEECCCCEEEEeCCCCEE-----EEecc-cCC-C------CcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 4455555688888765432 11211 000 0 0013467899999 9987776421
Q ss_pred ---CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCC
Q 010801 348 ---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV 415 (501)
Q Consensus 348 ---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~ 415 (501)
+.|..||..+ ++..........+ ..++++|++++|..+ +..+.|.+|++..
T Consensus 162 ~~~g~v~~~d~~~-~~~~~~~~~~~~p----------------~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 162 DKTGRLIKYDPST-KETTLLLKELHVP----------------GGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp CCCEEEEEEETTT-TEEEEEEEEESCC----------------CEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCCceEEEEeCCC-CEEEEeccCCccC----------------cceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 4577777643 3322222211111 579999999865544 5678999999875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00027 Score=72.69 Aligned_cols=114 Identities=12% Similarity=0.041 Sum_probs=71.2
Q ss_pred ceEEEEec-CCCCEEEEE--cCC----eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC---
Q 010801 220 NINSISNN-SDCETFVSA--DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--- 289 (501)
Q Consensus 220 ~v~~l~~~-~~~~~l~~~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--- 289 (501)
.+...+|| |||++|+.+ .+| .|+++|+.++.+.+.. .+ ......++|+||| +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------~~---~~~~~~~~WspDg-~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------KV---SGTNGEIVWGPDH-TSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------CE---EEECSCCEECSST-TEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------cc---cCceeeEEEecCC-CEEEEEEECCCC
Confidence 67788999 999998865 232 5999999854032110 01 1123468899999 767666654
Q ss_pred --CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----CCcEEEEEeeC
Q 010801 290 --GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRM 357 (501)
Q Consensus 290 --g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~~~i~lwd~~~ 357 (501)
..|.++++.++.... ..++.. ........+.|+|||++|+... ...|+++|+..
T Consensus 245 ~~~~v~~~~lgt~~~~~--~lv~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSED--VCLYEE------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CEEEEEEEETTSCGGGC--EEEEEC------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CCCEEEEEECCCCchhc--EEEEec------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 257777876653211 122222 0113456789999999988542 25788888864
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0015 Score=65.97 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=48.9
Q ss_pred EEEEecCCCcEEEEEeCCC-------------------eEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 272 SAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg-------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
.++++|+. .+++.++.++ .|..+|.++++... .+.. .+.....+ ....+...
T Consensus 234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W----~~~~---~~~~~wd~-~~~~~~~~ 304 (668)
T 1kv9_A 234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW----HYQV---TPGDSWDF-TATQQITL 304 (668)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE----EEES---STTCCSCC-CCCSCEEE
T ss_pred ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceee----Eeec---CCCccccc-cCCCCcEE
Confidence 46888887 7888887776 39999999987542 1111 00000000 00122222
Q ss_pred EEEeeCCC---EEEEEc-CCcEEEEEeeCCCCceeEe
Q 010801 333 IKFANDGQ---HLLSRD-YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 333 ~~~sp~~~---~l~~~~-~~~i~lwd~~~~~~~~~~~ 365 (501)
..+..+|+ .++.++ +|.++++|..+ ++++...
T Consensus 305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~ 340 (668)
T 1kv9_A 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAE 340 (668)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEE
T ss_pred EEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccc
Confidence 33334675 566665 59999999986 7776444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00036 Score=70.60 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=48.2
Q ss_pred EEEEcc-CCCEEEEEecCC-----------cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcc
Q 010801 37 AIEFDK-TGDYLAVGDRGG-----------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPE 103 (501)
Q Consensus 37 ~v~~s~-~g~~latg~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~ 103 (501)
++++.+ +|++++.|+.+. .+.+||..+++-. .+..+ ..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-------------------------~~~~~~~~~~-- 242 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-------------------------DRTVTVTKHD-- 242 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-------------------------CCEEEECSCC--
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE-------------------------eCcccCCCCC--
Confidence 556667 888888887543 5788888876532 11111 1121
Q ss_pred hhhccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceee
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKK 151 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~ 151 (501)
.....+++. .++.+++.|+ .+..+.+||..+++...
T Consensus 243 ----------~~~~~~~~~--~~g~lyv~GG~~~~~v~~yd~~t~~W~~ 279 (656)
T 1k3i_A 243 ----------MFCPGISMD--GNGQIVVTGGNDAKKTSLYDSSSDSWIP 279 (656)
T ss_dssp ----------CSSCEEEEC--TTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred ----------CccccccCC--CCCCEEEeCCCCCCceEEecCcCCceeE
Confidence 223345654 6888999988 45689999998876544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0013 Score=65.14 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
.+.+++.++.||.++.||.++++.+ ..++.
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~l-W~~~l 512 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLL-WKFKI 512 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred cCCEEEEECCCCeEEEEECCCCCEE-EEeeC
Confidence 4667778999999999999999655 44443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0035 Score=58.65 Aligned_cols=121 Identities=7% Similarity=-0.074 Sum_probs=69.7
Q ss_pred cceEEEEecCCCCEEEEE--cC-CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+++.|.+..|..+ .. +.|..++++ +.....+ ....-.....|+++|++.+++++-+..+.|..+
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~-------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRII-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEE-------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEE-------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 456788999877666655 44 788888887 3322222 112233568999998763455555557889999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~ 366 (501)
|+...... .+... .......+++ ..+.++++-. .+.|..++..+ ++.+..+.
T Consensus 274 d~dG~~~~----~~~~~-------------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~-G~~~~~i~ 326 (386)
T 3v65_B 274 NLDGSHRK----AVISQ-------------GLPHPFAITV-FEDSLYWTDWHTKSINSANKFT-GKNQEIIR 326 (386)
T ss_dssp CTTSCSCE----EEECS-------------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred eCCCCeeE----EEEEC-------------CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC-CcceEEEc
Confidence 98653211 12211 0124567777 3344444443 37788887543 55555554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0013 Score=65.04 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=39.3
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
+.|.-||+.+ ++.+-+....... ..-.....+.+++.|+.||.++.||.++++.+ ..++..
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l-W~~~~~ 526 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL-WKFQTG 526 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECS
T ss_pred ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCCCEE-EEecCC
Confidence 6788888876 6666555432211 11111224567888999999999999999655 555443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0086 Score=55.12 Aligned_cols=121 Identities=7% Similarity=-0.074 Sum_probs=68.3
Q ss_pred cceEEEEecCCCCEEEEE--cC-CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+++.|.+..|..+ .. +.|...+++ +.....+ ....-.....++++|++..++++-...+.|..+
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~-------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRII-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEES-------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEE-------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 446789999866666554 44 788888887 3322211 122234568999998773444554557889999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~ 366 (501)
|+...... ..... .-.....+++ .++.+.++-. .+.|..++..+ ++....+.
T Consensus 231 ~~dG~~~~----~~~~~-------------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~-G~~~~~i~ 283 (349)
T 3v64_C 231 NLDGSHRK----AVISQ-------------GLPHPFAITV-FEDSLYWTDWHTKSINSANKFT-GKNQEIIR 283 (349)
T ss_dssp ETTSCSCE----EEECS-------------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred eCCCCceE----EEEeC-------------CCCCceEEEE-ECCEEEEecCCCCeEEEEEccC-CCccEEec
Confidence 98653211 11211 0124566777 3343333433 37777777443 55444443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.02 E-value=0.026 Score=60.49 Aligned_cols=121 Identities=8% Similarity=0.089 Sum_probs=66.3
Q ss_pred cEEEEEe----------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcE
Q 010801 281 NLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (501)
Q Consensus 281 ~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i 350 (501)
.+|++|+ ..|.|.+|++..+++. .... ....+++++++-- +| +|++|-..+|
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~-----lv~~-----------~~v~g~v~al~~~-~g-~Lla~ig~~l 906 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-----TVAE-----------KEVKGAVYSMVEF-NG-KLLASINSTV 906 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE-----EEEE-----------EEESSCEEEEEEE-TT-EEEEEETTEE
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECCEEE-----EEEE-----------EEcCCcCEEEeee-CC-EEEEEcCCEE
Confidence 6888886 3588999998744322 1111 1124577777644 35 5666656899
Q ss_pred EEEEeeCCCCcee-EeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc--c
Q 010801 351 KLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--K 427 (501)
Q Consensus 351 ~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~ 427 (501)
++|++.. .+.+. ....... + ..+.....+.+++.|..-..|.+...+........+..+ .
T Consensus 907 ~vy~l~~-~~~L~~~~~~~~~-i---------------~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~ 969 (1158)
T 3ei3_A 907 RLYEWTT-EKELRTECNHYNN-I---------------MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP 969 (1158)
T ss_dssp EEEEECT-TSCEEEEEEECCC-S---------------CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSC
T ss_pred EEEECCC-CceEEEEeecccc-E---------------EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccc
Confidence 9999975 44343 1111111 1 122332356788889887777776554332333334333 3
Q ss_pred Ccccceeec
Q 010801 428 NENRKPILQ 436 (501)
Q Consensus 428 ~~v~~~~~~ 436 (501)
.+++++.+-
T Consensus 970 ~~vta~~~l 978 (1158)
T 3ei3_A 970 NWMSAVEIL 978 (1158)
T ss_dssp BCEEEEEEE
T ss_pred ccEEEEEEE
Confidence 344455554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.008 Score=54.46 Aligned_cols=159 Identities=10% Similarity=-0.015 Sum_probs=94.8
Q ss_pred ceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-CeEEEEE
Q 010801 220 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD 296 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~~wd 296 (501)
....+++.+.+..|. +- ..+.|.+.+++ +.....++ .........++++|.++.++++.... +.|...+
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 346788886555554 44 78899999988 33322221 11223568999999762444443333 6888888
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeecc-ccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIH-EHLRP 373 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~-~~~~~ 373 (501)
+..... +.+.. ..-.....++++|++..|..++ . +.|..+|+. +.....+... ....
T Consensus 150 ~dG~~~-----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~~- 209 (316)
T 1ijq_A 150 LNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 209 (316)
T ss_dssp TTSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS-
T ss_pred CCCCCe-----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCccC-
Confidence 754321 11111 0013578999999888777664 3 789999985 3333333221 1100
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
. ...+++. .+.++++-...+.|..++..+++..
T Consensus 210 ---------~---P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 210 ---------H---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp ---------S---EEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred ---------C---cEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 0 0467775 4566667777889999998777544
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0091 Score=54.42 Aligned_cols=157 Identities=12% Similarity=0.085 Sum_probs=81.7
Q ss_pred ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
.+..+.+.+++..++++.++.|. .....+.....+ .......+..+.+.|++ .+++++...+..+-.|- .
T Consensus 123 ~~~~i~~~~~~~~~~~~~~g~v~--~S~DgG~tW~~~------~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~-g 192 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITNVGAIY--RTKDSGKNWQAL------VQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEP-G 192 (327)
T ss_dssp CEEEEEEEETTEEEEEETTCCEE--EESSTTSSEEEE------ECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECT-T
T ss_pred CeEEEEEECCCCEEEEeCCccEE--EEcCCCCCCEEe------ecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCC-C
Confidence 45667766677666666555443 222233333322 12334568899999987 77766544333333332 1
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccC
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (501)
+. .+.... ......+..+.+.+++++++++.+|.+++.+.. .++....+......
T Consensus 193 G~-------tW~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~G~tW~~~~~~~~~-------- 247 (327)
T 2xbg_A 193 QT-------AWEPHN---------RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD-NSENWGELLSPLRR-------- 247 (327)
T ss_dssp CS-------SCEEEE---------CCSSSCEEEEEECTTSCEEEEETTTEEEEEETT-EEEEECCCBCTTSS--------
T ss_pred CC-------ceeECC---------CCCCCccceeEECCCCCEEEEeCCceEEEecCC-CCCeeEeccCCccc--------
Confidence 11 111100 011346788999999988887777877776421 12222222111000
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
... .+..+.+.+++.+++++. +|.| ++..+.+
T Consensus 248 ~~~---~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 248 NSV---GFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp CCS---CEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred CCc---ceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence 000 125788988887776654 5665 3444444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.90 E-value=0.016 Score=54.40 Aligned_cols=159 Identities=9% Similarity=0.022 Sum_probs=95.3
Q ss_pred cceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-C-CCeEEE
Q 010801 219 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S-RGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~-dg~i~~ 294 (501)
.....+++.+.+..|+. - ..+.|.+.+++ +.....++ .........++++|.+ ..|+... . .+.|..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~-------~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK 229 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEE-------ECSSCCEEEEEEETTT-TEEEEEECSSSCCEEE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEEE-------eCCCCCcceEEEeccc-CeEEEEeCCCCCEEEE
Confidence 45677888875555544 4 67899999988 33322221 1122346899999976 4454444 2 477888
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeecc-ccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIH-EHL 371 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~-~~~ 371 (501)
.++...... .+... .-.....++++|++..|..++ .+.|..+|+. +.....+... ...
T Consensus 230 ~~~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~l 290 (400)
T 3p5b_L 230 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL 290 (400)
T ss_dssp EETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSSTT
T ss_pred EeCCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCCCC
Confidence 887654221 11111 013578999999888877764 2788888875 4433333221 111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
. . ..++++. .+.++.+-...+.|..++..+++..
T Consensus 291 ~----------~---P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 291 A----------H---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp S----------S---EEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred C----------C---CEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 0 0 0467763 3456666677788999997777554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.015 Score=55.61 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=69.4
Q ss_pred cceEEEEe-------cCCCCEEEEE-cCC-------eEEEEECCCCCeee-----eeeecCCCCCCCcccceEEEEEecC
Q 010801 219 FNINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPI 278 (501)
Q Consensus 219 ~~v~~l~~-------~~~~~~l~~~-~d~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~v~~~p~ 278 (501)
.....++| ++++..|+++ ..+ .|.+++....+... ..+ ... .....++++|+
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~~-~~p~giavdp~ 257 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AAY-KQCNGATIHPI 257 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EEE-SCCCCEEECTT
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------ccC-CCceEEEEcCC
Confidence 45788999 9999966665 332 26666644212221 111 111 23357788996
Q ss_pred CCcEEEEEeCCCeEEEEEcc-------CCccccc--------ccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 279 YCNLLAYSSSRGFVRLVDMR-------QSALCDH--------SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 279 ~~~~l~~~~~dg~i~~wd~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
+..++++-..++.|..+|+. ++..... ...++.. +.......++|+|+|++|.
T Consensus 258 ~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~------------~~~~~p~~ia~~p~G~~lY 325 (496)
T 3kya_A 258 NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI------------ADPSWEFQIFIHPTGKYAY 325 (496)
T ss_dssp TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC------------SSSSCCEEEEECTTSSEEE
T ss_pred CCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec------------CCCCCceEEEEcCCCCEEE
Confidence 53666677778899999997 4432000 0011111 0123467899999999666
Q ss_pred EEc--CCcEEEEEee
Q 010801 344 SRD--YMNLKLWDIR 356 (501)
Q Consensus 344 ~~~--~~~i~lwd~~ 356 (501)
.++ ...|+.++..
T Consensus 326 vaD~~~h~I~kid~d 340 (496)
T 3kya_A 326 FGVINNHYFMRSDYD 340 (496)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEeCCCCEEEEEecC
Confidence 553 3888887775
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.016 Score=55.32 Aligned_cols=185 Identities=8% Similarity=-0.001 Sum_probs=93.2
Q ss_pred EEEEecCCCCE-EEEE-cCCeEEEEECC-------CCCe------e----e-eeeecCCCCCCCcccceEEEEEecCCCc
Q 010801 222 NSISNNSDCET-FVSA-DDLRINLWNLE-------ISDQ------C----F-NIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (501)
Q Consensus 222 ~~l~~~~~~~~-l~~~-~d~~i~iwd~~-------~~~~------~----~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 281 (501)
..++++|++.. +++- .++.|..+|+. .... . . .++ ... .....+.++|+|+| +
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-----~~~-~~~~p~~ia~~p~G-~ 322 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-----TIA-DPSWEFQIFIHPTG-K 322 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-----ECS-SSSCCEEEEECTTS-S
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE-----ecC-CCCCceEEEEcCCC-C
Confidence 45788995444 4555 88899999987 2221 0 1 111 011 22345899999999 7
Q ss_pred E-EEEEeCCCeEEEEEccCCcccccccceeecccccCCCcc-e-eeeccccee-EEEEe-------eCCCEEEEEcC-Cc
Q 010801 282 L-LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS-F-FTEIIASIS-DIKFA-------NDGQHLLSRDY-MN 349 (501)
Q Consensus 282 ~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~h~~~i~-~~~~s-------p~~~~l~~~~~-~~ 349 (501)
. +++-+....|+.+|............++.+......... . ....=.... .++.. ++|.+.++-.. ..
T Consensus 323 ~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r 402 (496)
T 3kya_A 323 YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC 402 (496)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE
T ss_pred EEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE
Confidence 5 444456788999765432100000012222000000000 0 000001223 44444 44555444333 88
Q ss_pred EEEEEeeCCCCceeEeecccccc---c----cccc--cCCCCCcceeeEEEEcCC-CcEEEEEeCCCeEEEEecCCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLR---P----KLCD--LYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~---~----~~~~--~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~ 416 (501)
|+.++. .+ .+.++.+..... + ...+ +...-.......++++++ |.++++=..+.+|+.++++..
T Consensus 403 Ir~i~~--~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 403 VRKVTP--EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEECT--TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEEEeC--CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 998883 24 455665432100 0 0000 000111112368999996 877777777899999998765
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.042 Score=56.22 Aligned_cols=159 Identities=9% Similarity=0.013 Sum_probs=95.2
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-CC-CeEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-g~i~~ 294 (501)
.....|++.+.++.|+.+ ..+.|.+.+++ +.....++ .........|+++|.+ ..|+.+. .. +.|..
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l~-------~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK 541 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEEE-------eCCCCCcceEEEecCC-CCEEEecCCCCCeEEE
Confidence 345678888777666655 78899999998 43322221 1222347899999986 4455444 33 77888
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEee-ccccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK-IHEHL 371 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~-~~~~~ 371 (501)
.++...... .+... .-.....|++.+.+..|..++. +.|..+++. +.....+. .....
T Consensus 542 ~~~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l 602 (791)
T 3m0c_C 542 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL 602 (791)
T ss_dssp EETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTT
T ss_pred EecCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCcc
Confidence 888654321 11111 0135789999988777776642 778888875 44444432 21111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
. ...+|++.. +.++++-...+.|...+..+++.+
T Consensus 603 ~-------------~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 603 A-------------HPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp S-------------SEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred C-------------CCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 1 004566643 345555566788888887777554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.019 Score=51.89 Aligned_cols=122 Identities=7% Similarity=0.003 Sum_probs=68.0
Q ss_pred cceEEEEecCCCCEEEEE--cC-CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+++.|.+..|..+ .. +.|...+++ +.....+ ....-.....++++|++.+++++-+..+.|..+
T Consensus 120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~-------~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~ 191 (316)
T 1ijq_A 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191 (316)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEE-------EECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence 356788999866655554 33 788888887 3322211 111224568999998872444444557899999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEe
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~ 365 (501)
|+..... +.+.... +.-.....+++. .+.++++-.. +.|..++..+ ++.+..+
T Consensus 192 d~dg~~~-----~~~~~~~----------~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~-g~~~~~i 245 (316)
T 1ijq_A 192 DVNGGNR-----KTILEDE----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLL 245 (316)
T ss_dssp ETTSCSC-----EEEEECT----------TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-CCCCEEE
T ss_pred ecCCCce-----EEEeecC----------CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC-CcceEEE
Confidence 9875321 2221100 001234566774 3434444333 7888888654 5544444
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0067 Score=57.61 Aligned_cols=155 Identities=7% Similarity=0.006 Sum_probs=89.9
Q ss_pred cceEEEEecC-CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CC----e
Q 010801 219 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG----F 291 (501)
Q Consensus 219 ~~v~~l~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg----~ 291 (501)
.....++++| ++..|..+ ..+.|+.+|+. .+....+. ........++|++++ +.|+++.. ++ .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~--------~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVY--------SGLSKVRTICWTHEA-DSMIITNDQNNNDRPN 206 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEE--------CCCSCEEEEEECTTS-SEEEEEECCSCTTSEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEe--------cCCCCcceEEEeCCC-CEEEEEeCCCCcccce
Confidence 3456789998 45556665 44889999988 44433321 133457899999999 75555554 22 2
Q ss_pred EEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccc
Q 010801 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 292 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
+..++. .+..... ..+.. -.....++++| +|.++++-. .+.|+.++... +..........
T Consensus 207 v~~~~~-~g~~~~~--~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~ 268 (430)
T 3tc9_A 207 NYILTR-ESGFKVI--TELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQD 268 (430)
T ss_dssp EEEEEG-GGTSCSE--EEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSS
T ss_pred EEEEeC-CCceeee--eeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCC
Confidence 333333 3221100 11111 13467888999 666555543 38899998763 32212221111
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcE-EEEEeCCCeEEEEecCC
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGV 415 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~s~~~dg~i~iwd~~~ 415 (501)
...+ ..++|+|+|++ +++-...+.|..++.+.
T Consensus 269 ~~~P--------------~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 269 SGWE--------------FHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSCC--------------EEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCcc--------------eeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 1111 68999999994 45555678999988763
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.015 Score=52.51 Aligned_cols=160 Identities=8% Similarity=0.071 Sum_probs=87.7
Q ss_pred CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE--ecCCCc-EEEEEeCCCeEEEEEccC---Ccccccccceee
Q 010801 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILR 311 (501)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~-~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~ 311 (501)
+++|.+|++......+..+.-....+..-...+..+++ +|.... ++++...+|.+..|++.. +....+.++.+.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68999997742222233220000000011145677787 675423 677778899999999843 323333334555
Q ss_pred cccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCC----CCceeEeeccccccccccccCCCCCcce
Q 010801 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFD 386 (501)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (501)
. ...+..|...+....|..+.. ..|..++.+.. .+.+..+. .... ..+
T Consensus 178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l------------~aD 230 (355)
T 3amr_A 178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHL------------TRD 230 (355)
T ss_dssp C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSB------------CSC
T ss_pred C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCcc------------ccC
Confidence 4 356889999988888888754 33555554321 12332221 1111 112
Q ss_pred eeEEEE--cCCCc-EEEEEe-CCCeEEEEecCCCCcceEEEe
Q 010801 387 KFECSV--SGDGL-HFATGS-YSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 387 ~~~~~~--s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 424 (501)
+..+++ .++++ +|++.+ .+++..+||.+........+.
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 256766 45555 666666 578999999973323444443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.019 Score=54.43 Aligned_cols=170 Identities=9% Similarity=-0.032 Sum_probs=89.6
Q ss_pred cceEEEEecCCCCEEEEEcCC-----eEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec-CCCcEEEEEeCCCeE
Q 010801 219 FNINSISNNSDCETFVSADDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFV 292 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~dg~i 292 (501)
.....++++++|+++++...+ .+...+.......... +. .-.....++++| ++ .++++-..++.|
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~-------~~-~~~~P~giavd~~~G-~lyv~d~~~~~V 252 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLS-------LC-NARGAKTCAVHPQNG-KIYYTRYHHAMI 252 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEE-------EE-ECSSBCCCEECTTTC-CEEECBTTCSEE
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccc-------cc-ccCCCCEEEEeCCCC-eEEEEECCCCEE
Confidence 457789999999955544321 2333332211110011 11 123346788999 55 666666667899
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCc---eeEeec
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP---VATFKI 367 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~---~~~~~~ 367 (501)
+.+|..++.... ..+.. .. ...-..++|+|+|++|..++ .+.|+.++....... ...+.+
T Consensus 253 ~~~d~~~g~~~~---~~~~~-~~-----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag 317 (433)
T 4hw6_A 253 SSYDPATGTLTE---EEVMM-DT-----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG 317 (433)
T ss_dssp EEECTTTCCEEE---EEEEC-SC-----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred EEEECCCCeEEE---EEecc-CC-----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence 999987664311 11211 00 11234699999999666553 378988887521121 122222
Q ss_pred ccccccccccc-CCCCCcceeeEEEE---------cCCCcEEEEEeCCCeEEEEec
Q 010801 368 HEHLRPKLCDL-YNNDSIFDKFECSV---------SGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 368 ~~~~~~~~~~~-~~~~~~~~~~~~~~---------s~~~~~l~s~~~dg~i~iwd~ 413 (501)
..... ...+. ...........+++ .++|.++++-...+.|+.++.
T Consensus 318 ~~g~~-g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 318 QHSSP-GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp CTTCC-CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred cCCCC-ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 20000 00000 00000111257899 778888877777888998874
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.053 Score=53.56 Aligned_cols=27 Identities=4% Similarity=0.037 Sum_probs=21.8
Q ss_pred CCEEEEeeCCCeEEEEeccccceeeee
Q 010801 127 GSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 127 ~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
+..++.++.|+.|..+|..+++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 457788888999999999999866543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.62 E-value=0.036 Score=50.09 Aligned_cols=157 Identities=11% Similarity=0.063 Sum_probs=93.9
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe--CCCeEEEE
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV 295 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~~w 295 (501)
....+++.+.+..|+.+ ..+.|.+++++ +.....+ ..........++++|.+ ..|+.+. ..+.|...
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERA 150 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEE-------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEE
Confidence 34568888755555444 67899999988 3322221 11223456899999976 4455444 25788888
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
++...... ..... .-...+.++++|++..|..++ . +.|..+|+. +.....+.......+
T Consensus 151 ~~dG~~~~----~~~~~-------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~P 211 (318)
T 3sov_A 151 GMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPHP 211 (318)
T ss_dssp ETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCSCE
T ss_pred EcCCCCeE----EEEEC-------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCCCc
Confidence 87643211 11111 013468999999887777664 3 888888875 333333321111110
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (501)
..+++.. +.++.+-...+.|..++..+++..
T Consensus 212 --------------~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 212 --------------FALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp --------------EEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred --------------eEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 4677753 455666667789999998777544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.58 E-value=0.041 Score=49.74 Aligned_cols=121 Identities=5% Similarity=-0.041 Sum_probs=68.4
Q ss_pred cceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 219 FNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.....+++.|.+..|..+ . .+.|...+++ +.....+ ....-.....++++|++.+++++-+..+.|..+
T Consensus 122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~-------~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFII-------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEE-------EECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 345788898866666555 2 5788888877 3322221 111223468999999762444554557889999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEee
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~ 366 (501)
|+...... .+... .-.....+++.. +.++.+-. .+.|..++..+ ++....+.
T Consensus 194 d~dG~~~~----~~~~~-------------~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 246 (318)
T 3sov_A 194 NLDGTNRQ----AVVKG-------------SLPHPFALTLFE-DILYWTDWSTHSILACNKYT-GEGLREIH 246 (318)
T ss_dssp ETTSCSCE----EEECS-------------CCSCEEEEEEET-TEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred cCCCCceE----EEecC-------------CCCCceEEEEeC-CEEEEEecCCCeEEEEECCC-CCceEEEe
Confidence 98653221 11111 012345666642 33333433 37888888764 55544443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.046 Score=49.95 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=93.3
Q ss_pred ceEEEEecCCCCEEEEE-------------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec--CCCcEEE
Q 010801 220 NINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLA 284 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~~l~ 284 (501)
....+...|+|..++++ .+|.|.++|.+........+.+....+.........+.+.+ ++...|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566677877666654 58899999987332222222111100222334667788766 3412344
Q ss_pred EE-eC--CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc----C----------
Q 010801 285 YS-SS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y---------- 347 (501)
Q Consensus 285 ~~-~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~----~---------- 347 (501)
++ .. +..|.+|++............+... .-...+.+.+.++|.+.++.. +
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~------------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~ 198 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL 198 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCT------------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccC------------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence 43 33 5678888876543222112222220 024678999999999888753 1
Q ss_pred --CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCC
Q 010801 348 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV 415 (501)
Q Consensus 348 --~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~ 415 (501)
..-+||.+.. ++......+-..+ +.++|+||++.|..+ +..+.|..|+++.
T Consensus 199 ~~~~g~vyr~d~-~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 199 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TCCCEEEEEECT-TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCccEEEEEEC-CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1234555543 3322222222222 689999999877655 4578999999874
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.56 E-value=0.054 Score=50.78 Aligned_cols=122 Identities=9% Similarity=0.027 Sum_probs=68.5
Q ss_pred cceEEEEecCCCCEEEEE--c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE-eCCCeEEE
Q 010801 219 FNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~ 294 (501)
.....|++.|.+..|+.+ . .+.|...+++ +.....+ ....-.....|++++++ ..|+.+ ...+.|..
T Consensus 202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~-------~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS 272 (400)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred CCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEE-------EECCCCceEEEEEEeCC-CEEEEEECCCCEEEE
Confidence 346789999866666554 2 4788888887 3322222 11222456899999887 555554 45788999
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEee
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~ 366 (501)
+|+...... .+... . +.-....++++. .+.++.+-.. +.|..+|..+ ++.+..+.
T Consensus 273 ~d~dG~~~~----~~~~~-~----------~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 328 (400)
T 3p5b_L 273 IDVNGGNRK----TILED-E----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA 328 (400)
T ss_dssp EETTSCCCE----EEEEC-S----------STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred EeCCCCccE----EEEeC-C----------CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence 998654321 12111 0 001233456653 2333334333 7888888654 55555544
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.079 Score=54.24 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=47.5
Q ss_pred cceEEEEecCCCCEEEEE--c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE-eCCCeEEE
Q 010801 219 FNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~ 294 (501)
.....|++.|.+..|+.+ . .+.|...+++ +.....+ +...-.....|++++.+ ..|+.+ ...+.|..
T Consensus 514 ~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~l-------v~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS 584 (791)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred CCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEE-------EeCCCCCceEEEEecCC-CeEEEEeCCCCcEEE
Confidence 346789999876666554 3 3788888887 3333222 12223467899999877 555554 45678999
Q ss_pred EEccCC
Q 010801 295 VDMRQS 300 (501)
Q Consensus 295 wd~~~~ 300 (501)
.|+...
T Consensus 585 ~d~dG~ 590 (791)
T 3m0c_C 585 IDVNGG 590 (791)
T ss_dssp EETTSC
T ss_pred EecCCC
Confidence 998654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.033 Score=49.80 Aligned_cols=123 Identities=12% Similarity=0.099 Sum_probs=77.2
Q ss_pred ceEEEEe---cCCCCEEEEEc--------------CCeEEEEECC---CCCeeeeeeecCCCCCCC-------cccceEE
Q 010801 220 NINSISN---NSDCETFVSAD--------------DLRINLWNLE---ISDQCFNIVDMKPSNMDD-------LTEVITS 272 (501)
Q Consensus 220 ~v~~l~~---~~~~~~l~~~~--------------d~~i~iwd~~---~~~~~~~~~~~~~~~~~~-------~~~~v~~ 272 (501)
.+..|.| .|+++++++.+ +..|..+|+. +.+.... .++... ..+ -......
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~~-~~~~~~~~g~~~~~~nD 141 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS-VNFEKV-QDEFEKKAGKRPFGVVQ 141 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE-EESHHH-HHHHHHHHSSCCEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEE-ecCccc-cccccccccccccCCce
Confidence 3467888 57877776542 5779999988 4443322 221100 000 1134789
Q ss_pred EEEecCCCcEEEEEeCC-CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcE
Q 010801 273 AEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i 350 (501)
++..++| +..++++.. +.|...+...... ..+.. .... .......+.|+++|+|+.|++.. .+.|
T Consensus 142 vavD~~G-naYVt~s~~~~~I~rV~pdG~~~-----~~~~~-~~~~------~~~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 142 SAQDRDG-NSYVAFALGMPAIARVSADGKTV-----STFAW-ESGN------GGQRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp EEECTTS-CEEEEEEESSCEEEEECTTSCCE-----EEEEE-CCCC------SSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred eEECCCC-CEEEeCCCCCCeEEEEeCCCCEE-----eeeee-cCCC------cccccCcceEEEeCCCCEEEEEcCCCeE
Confidence 9999999 999988888 8877777654321 22211 1000 00123578999999999888874 5999
Q ss_pred EEEEeeC
Q 010801 351 KLWDIRM 357 (501)
Q Consensus 351 ~lwd~~~ 357 (501)
..+|+..
T Consensus 209 ~~fD~~~ 215 (334)
T 2p9w_A 209 TAFDVSK 215 (334)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 9999863
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.089 Score=52.47 Aligned_cols=154 Identities=8% Similarity=0.020 Sum_probs=93.1
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe--CCCeEEEE
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV 295 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~~w 295 (501)
....+++.+.+..|..+ ..+.|.+.+++ +.....+ +...-.....++++|.. ..|+... ..+.|...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQVL-------VWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCEEE-------ECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEEEE-------EeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEE
Confidence 45578887666656554 67899999987 3322221 11222346899999965 4454444 25678877
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEeeccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
++...... .+... -.....++++++++.|..++. +.|..+|+.. .....+.......
T Consensus 152 ~~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~P- 210 (628)
T 4a0p_A 152 AMDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPHP- 210 (628)
T ss_dssp ETTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSCE-
T ss_pred eCCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCCc-
Confidence 77654321 11111 245789999998887777643 7888888863 2223332211111
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
.++++.. +.++++-...+.|...|..+++.
T Consensus 211 --------------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 211 --------------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp --------------EEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred --------------eEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 4677765 45555666678898888776644
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0012 Score=67.04 Aligned_cols=156 Identities=11% Similarity=0.028 Sum_probs=86.3
Q ss_pred eEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe-CC-CeEEEEE
Q 010801 221 INSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRLVD 296 (501)
Q Consensus 221 v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~d-g~i~~wd 296 (501)
...|++.+.+..|+ +- ..+.|.++++. +.....+ +.........++++|.+ ..|+.+. .. +.|..++
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l-------~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEE-------CCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEE-------EeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEe
Confidence 34577775444444 43 67889999987 3332222 11112335778899876 4444433 22 6777777
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeecccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 374 (501)
+..... +.+.. ..-.....|+++|++..|..++ . +.|..+++. +.....+........
T Consensus 526 ~dG~~~-----~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~- 585 (699)
T 1n7d_A 526 LNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 585 (699)
T ss_dssp SSSCCC-----CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS-
T ss_pred CCCCCe-----eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC-
Confidence 654321 11111 0013467899999877666654 3 789998885 333333321110000
Q ss_pred ccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.. ..+++..+ .++++....+.|..++..+++
T Consensus 586 --------~P---~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 586 --------HP---FSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp --------SC---CCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred --------Cc---eEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 00 35666554 455566667899999987763
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.039 Score=50.77 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=21.3
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
.....|+|.|+|++++ +..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe
Confidence 4578999999998555 46679998886
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.076 Score=48.80 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=21.7
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEE
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~ 60 (501)
.....|+|.|+|+++++ ..+|.|++++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence 45789999999995554 5679999888
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.019 Score=51.40 Aligned_cols=178 Identities=11% Similarity=0.033 Sum_probs=101.4
Q ss_pred cceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCCCC-CCcccceEEEEE---ecCCCcEEEEEe-----
Q 010801 219 FNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEF---HPIYCNLLAYSS----- 287 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~---~p~~~~~l~~~~----- 287 (501)
.--.+++|.+....| ++. ..++|..||.. .+....+ ....... ......+..+.| .|++ +++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 334568897754444 555 89999999987 3333322 1110000 011224589999 6887 8888644
Q ss_pred --------CCCeEEEEEcc---CCcccccccceeecccccCCCcceeee-cccceeEEEEeeCCCEEEEEc-C-CcEEEE
Q 010801 288 --------SRGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRD-Y-MNLKLW 353 (501)
Q Consensus 288 --------~dg~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~l~~~~-~-~~i~lw 353 (501)
.+..|..||+. +++.. ..... ...........+ -......++..++|+..++++ . +.|...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL-~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPV----WSVNF-EKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCS----EEEES-HHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEE----EEecC-ccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 26789999998 66543 11111 000000000000 012478999999999888765 3 454444
Q ss_pred EeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+. +++.+..+........ .....+.++++|+|+.|++....|.+..+|+..
T Consensus 165 ~p--dG~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 165 SA--DGKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CT--TSCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eC--CCCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 44 4554443321111100 011126899999999888887799999999884
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.075 Score=48.25 Aligned_cols=157 Identities=8% Similarity=0.002 Sum_probs=87.5
Q ss_pred ccceEEEEecCCCCEEEEEcCCeEEE-EECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 218 DFNINSISNNSDCETFVSADDLRINL-WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
...+..+.+.+++.+++.+.++.+.. +|- ++.....+. ......+..+.+.+++ .++ .++.+|.+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFSD 231 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEEec
Confidence 44678899999998888885454443 332 122222211 1234567889999987 655 455678877764
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeecccccccccc
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 376 (501)
...+ +.+.. ...+.. .+...+..+.+.+++.+++++.++.|. +..+ .++.-..+........
T Consensus 232 ~D~G-------~tW~~-~~~~~~-----~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~D-gG~tW~~~~~~~~~~~--- 293 (327)
T 2xbg_A 232 PDNS-------ENWGE-LLSPLR-----RNSVGFLDLAYRTPNEVWLAGGAGALL-CSQD-GGQTWQQDVDVKKVPS--- 293 (327)
T ss_dssp TTEE-------EEECC-CBCTTS-----SCCSCEEEEEESSSSCEEEEESTTCEE-EESS-TTSSCEECGGGTTSSS---
T ss_pred CCCC-------CeeEe-ccCCcc-----cCCcceEEEEecCCCEEEEEeCCCeEE-EeCC-CCcccEEcCccCCCCC---
Confidence 2223 22222 000000 011357888999888888888777663 3333 3544444432111000
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
. ...+.|.++++ ++.++.+|.|.-++
T Consensus 294 ------~---~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 294 ------N---FYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp ------C---CCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred ------C---eEEEEEECCCc-eEEEcCCceEEEEc
Confidence 1 15788875555 56667789876665
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=66.94 Aligned_cols=119 Identities=9% Similarity=0.015 Sum_probs=63.9
Q ss_pred eEEEEecCCCCEEEEE--c-CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 221 INSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
...|++.|.+..|+.+ . .+.|..+++. +.....+ +...-.....|+|+|++.+++++-+..+.|..+|+
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l-------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEE-------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEE-------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 4567888865555554 2 3678777776 2221111 11112345789999987355555566788999998
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cC-CcEEEEEeeCCCCceeEe
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~-~~i~lwd~~~~~~~~~~~ 365 (501)
...... .+... . +.-.....+++.. ..|+.. .. +.|..++..+ ++.+..+
T Consensus 570 dG~~~~----~~~~~-~----------~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~-G~~~~~i 621 (699)
T 1n7d_A 570 NGGNRK----TILED-E----------KRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT-GSDVNLL 621 (699)
T ss_dssp SSSCCE----EECCC-S----------SSCSSCCCCEEET--TEEEEECSTTTCEEEEETTT-EEEEECC
T ss_pred CCCceE----EEEec-C----------CcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccC-CCceEEe
Confidence 653221 11111 0 0001234455543 344433 33 8888888754 5555444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.1 Score=47.95 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=62.9
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC---CCcEEEEEeCC-----C
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSR-----G 290 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~d-----g 290 (501)
...+.++|.|+|+++++-.++.|.+++ . +. ......+. ...........++++|+ +..++++-..+ +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 356789999999866666669999998 3 22 21111111 11222346789999998 41444444332 6
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
.|..++...+... ....++...+.... ..| ....++|.|||.+.++.
T Consensus 106 ~v~r~~~~~~~~~-~~~~l~~~~p~~~~-----~~h--~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGV-LDRVVLDGIPARPH-----GLH--SGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCEE-EEEEEEEEECCCTT-----CCC--CCCCEEECTTSCEEEEC
T ss_pred EEEEEEeCCCCcC-ceEEEEEeCCCCCC-----CCc--CCceEEECCCCCEEEEE
Confidence 7888887643211 11112221000000 112 24689999999776663
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.073 Score=52.67 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=23.4
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeecccc
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
.+.+++.++ |+.++.||.++ ++.+-+++....
T Consensus 483 agg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g 515 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG 515 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred cCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence 455565564 69999999997 888887765443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.18 Score=50.24 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=103.8
Q ss_pred ccceEEEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
-..+..|+|++.+..|..+. ..+.|..+++++.... ...+..-.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--------------------------~~v~~~~~--------- 83 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------------QNVVVSGL--------- 83 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------------------------EEEECSSC---------
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------------------------EEEEeCCC---------
Confidence 45678999999777777665 4577888887654210 01122111
Q ss_pred ccccceeEEEEeecCCCC-EEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~-~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
.....|++. ..+. ++.+-...+.|.+.++.+.....+..... ..+..+...+....++-..
T Consensus 84 ---~~P~GlAvD--~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l-------------~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 84 ---LSPDGLACD--WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-------------DQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp ---SCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SCCCCEEEETTTTEEEEEE
T ss_pred ---CCcCeEEEE--ecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC-------------CCCceEEEecCCCeEEEec
Confidence 346778886 4344 44454577899999988755433321111 1122222222222222222
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
+.....|...+++.. ....+..........|++.++++.|..+ ..+.|...|++ +.....+ ..+..
T Consensus 146 ~g~~~~I~r~~~dG~----~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~-------~~~~~ 213 (619)
T 3s94_A 146 WGEVPKIERAGMDGS----SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAV-------VKGSL 213 (619)
T ss_dssp CSSSCEEEEEETTSC----SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC--------------
T ss_pred cCCCCEEEEEECCCC----ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEE-------EeCCC
Confidence 211223333333321 1111212234467889999887777776 67889888887 4332222 11111
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 301 (501)
....++++..+ .++.+-...+.|...|..+++
T Consensus 214 ~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 214 PHPFALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp --CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred CCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 22346666543 455554557889999987764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.2 Score=49.44 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.1
Q ss_pred CCEEEEeeCCCeEEEEeccccceeeee
Q 010801 127 GSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 127 ~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
+..++.++.|+.|..+|..+++.....
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 457778888999999999999876654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.14 Score=46.82 Aligned_cols=153 Identities=10% Similarity=0.120 Sum_probs=85.8
Q ss_pred ceEEEEecC--CCC--EEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCC-CcccceEEEEEecCCCcEEEEEeC---
Q 010801 220 NINSISNNS--DCE--TFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSS--- 288 (501)
Q Consensus 220 ~v~~l~~~~--~~~--~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~--- 288 (501)
....+.+.+ ++. ++++- . +.+|.+|+++..+.....+. .+. ..-...+.+.+.++| .++++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ft 187 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFI 187 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCS
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeC
Confidence 444555544 343 44443 3 67888988775433332221 111 123457899999998 77766541
Q ss_pred --------------CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEE
Q 010801 289 --------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKL 352 (501)
Q Consensus 289 --------------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~l 352 (501)
.|.|..+|. ++.. ...+. -...+.++|+||++.|..++ .+.|+.
T Consensus 188 d~~~~~~e~~~~~~~g~vyr~d~--~~~~----~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 188 DPYLKSWEMHLGLAWSFVTYYSP--NDVR----VVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp SHHHHHHHHHTTCCCEEEEEECT--TCCE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred CcccccchhhccCCccEEEEEEC--CeEE----EeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 234444443 2111 11221 23578999999999888764 389999
Q ss_pred EEeeCCCCce--eEeeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEEeCC-CeEEEEec
Q 010801 353 WDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSH 413 (501)
Q Consensus 353 wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~d-g~i~iwd~ 413 (501)
|++..+++.. ..+.....+ -.+++.+ +|++.+++..+ +.|..|+-
T Consensus 248 ~~~~~~g~l~~~~~~~~~g~P----------------DGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 248 YEKHANWTLTPLRVLSFDTLV----------------DNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEECTTSCEEEEEEEECSSEE----------------EEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEECCCCcEecCEEEeCCCCC----------------ceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 9997433321 122111111 4789999 59988766644 34444443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.38 Score=47.84 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=91.6
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC--CCeEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--dg~i~~ 294 (501)
.....+++.+.++.|+.+ ..+.|.+.+++ +.....+ ....-.....|+++|.+ ..|+.... .+.|..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIER 154 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEE-------EeCCCCCCceEEEecCC-CeEEEeccCCCCEEEE
Confidence 456789998866666555 78899999998 3322222 11222345789999986 44444443 466777
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--CcEEEEEeeCCCCceeEeec--ccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI--HEH 370 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~~i~lwd~~~~~~~~~~~~~--~~~ 370 (501)
.++...... .+... .-.....++++++++.|..++. +.|..+|+. +.....+.. ...
T Consensus 155 ~~~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~ 215 (619)
T 3s94_A 155 AGMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH 215 (619)
T ss_dssp EETTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC---------
T ss_pred EECCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCC
Confidence 776543221 11111 0235789999998777776642 788888875 333322211 111
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
+ .++++..+ .++.+-...+.|...|..+++.
T Consensus 216 P----------------~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 216 P----------------FALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp C----------------CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred c----------------eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 1 36777665 4555555678888888877643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.4 Score=47.75 Aligned_cols=199 Identities=13% Similarity=0.005 Sum_probs=106.4
Q ss_pred cceEEEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+..|+|++.+..|..+. .++.|..+++.+.... ..+....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------------------------~v~~~g~---------- 79 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------------------------HVVEFGL---------- 79 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------------------------EEEeCCC----------
Confidence 4678999999776666554 5688888887654321 1111111
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
.....|++.+ ..++++.+-...+.|.+.++.+.....+..... ..+..+...+....++-..+.
T Consensus 80 --~~P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-------------~~P~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 80 --DYPEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-------------DSPRALALDPAEGFMYWTEWG 143 (628)
T ss_dssp --SCCCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSSC-------------CCEEEEEEETTTTEEEEEECS
T ss_pred --CCcceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-------------CCcccEEEccCCCeEEEeCCC
Confidence 2356677752 234444554567889999887654333321111 111222222222222222221
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (501)
..+.|...+++... ...+ .........|++.++++.|..+ ..+.|...|++.... +++ ......
T Consensus 144 ~~~~I~r~~~dG~~----~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~-------~~~l~~ 209 (628)
T 4a0p_A 144 GKPKIDRAAMDGSE----RTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVI-------ADDLPH 209 (628)
T ss_dssp SSCEEEEEETTSCS----CEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE-------EECCSC
T ss_pred CCCEEEEEeCCCCc----eEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEe-------eccCCC
Confidence 12334334443221 1122 1234567789999987777776 678999999883332 221 111223
Q ss_pred eEEEEEecCCCcEEEEEeCCCeEEEEEccCC
Q 010801 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 270 v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 300 (501)
...+++.. + .++++-...+.|...|..++
T Consensus 210 P~glav~~-~-~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 210 PFGLTQYQ-D-YIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred ceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence 46777765 3 55555555788888886554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.28 Score=44.30 Aligned_cols=148 Identities=9% Similarity=0.217 Sum_probs=83.1
Q ss_pred CCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC---Cc---EEEEEe-C--CCeEEEEEcc
Q 010801 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---CN---LLAYSS-S--RGFVRLVDMR 298 (501)
Q Consensus 229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~~---~l~~~~-~--dg~i~~wd~~ 298 (501)
...+++.. ..+.+.+||+. ++.... +.. +.++.+...|.- .+ ++++.. . +++|.+|++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G~~l~~--------~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-GKMLHS--------YNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-SCEEEE--------ECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcCC-CcEEEE--------ccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 34455555 77899999996 554433 221 456667666631 02 233333 3 5789999774
Q ss_pred --CCcccccccceeecccccCCCcceeeecccceeEEEE--eeC-CC-EEEEE-cCCcEEEEEeeCC------CCceeEe
Q 010801 299 --QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--AND-GQ-HLLSR-DYMNLKLWDIRMD------STPVATF 365 (501)
Q Consensus 299 --~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~-~~-~l~~~-~~~~i~lwd~~~~------~~~~~~~ 365 (501)
++.+ ..+.. ...+ +..-...+..+++ +|. ++ ++++. .++.+..|++... .+.++++
T Consensus 108 p~~~~l-----~~i~~-~~~p-----v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 108 GKNGTL-----QSMTD-PDHP-----IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp TTTCCE-----EECSC-TTSC-----EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCce-----eeccc-cccC-----cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 3321 11110 0000 0000135677777 664 54 34444 4599999988421 3445666
Q ss_pred eccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
...... ..+...+....|..+-++.-|..++.+
T Consensus 177 ~lgsq~----------------EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 177 KMNSQT----------------EGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp ECSSCE----------------EEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred cCCCCc----------------ceEEEcCCCCeEEEecccceEEEEeCC
Confidence 544332 578888888899999998666555644
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.29 Score=45.28 Aligned_cols=164 Identities=11% Similarity=0.093 Sum_probs=97.1
Q ss_pred ecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCC--cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 226 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 226 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
...+|..++.+.++.||.-++... ..++.+. .+. .-..|..+..+|+| .+|+..+ +..|.+..+..+...
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~-~~Yk~L~-----~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTD-SLYHSLN-----FSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSN 99 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTC-SSCEEEE-----CTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSC
T ss_pred EEcCCCEEEEEECCEEEEEECCCC-CcceEEe-----cCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCcccc
Confidence 356788888887899999888833 3455432 221 11246789999999 9888875 558999988743211
Q ss_pred cc------c--cceeecccccCCCcceeeecccceeEEEEeeCC---CEEEE-EcCCcEEEEEeeCC-CCceeEeecccc
Q 010801 304 DH------S--ARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLS-RDYMNLKLWDIRMD-STPVATFKIHEH 370 (501)
Q Consensus 304 ~~------~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~---~~l~~-~~~~~i~lwd~~~~-~~~~~~~~~~~~ 370 (501)
.. . .+.+.. . +. ......+|..+.|+|-+ ..|++ .+|+.|++||+... .++. .+.....
T Consensus 100 ~~~~~~~~~~q~~ty~l-~--~~----~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSI-D--EE----EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp CCCHHHHHTTEEEEEEG-G--GC----C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred CcccccccccceeEEEc-C--Cc----ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 10 0 112222 0 00 01124689999999943 35554 46799999999741 2333 3331111
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEe--CCCeEEEE
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIF 411 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~iw 411 (501)
. +.....+.++.+++|.+++-.|...+ ..|-|+-.
T Consensus 172 ---~---fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 ---S---FGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ---E---EESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ---c---cCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 0 01112223457999999887666644 77887643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.45 Score=43.59 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=22.7
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEec
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~ 62 (501)
.....|+|.|+|++|.++...|.|++++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 457899999999934445668999998843
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.14 Score=46.94 Aligned_cols=113 Identities=13% Similarity=0.038 Sum_probs=62.1
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC---CCcEEEEEeC---C---
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS---R--- 289 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~---d--- 289 (501)
...+.++|.|+|+++++-.++.|++++.. +...+. .+. ...........|+++|+ +..++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~~~~~--~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GKKLVA--SFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CEEEEE--ECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-CceEee--ccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45678999999986666566999999743 321211 111 11122345789999997 4144444332 3
Q ss_pred -CeEEEEEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 290 -GFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 290 -g~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
+.|..|+........ ....++..-. . -..| ....++|.|||.+.++.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~--~-----~~~h--~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIP--G-----AYIH--NGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEE--C-----CSSC--CCCCEEECTTSCEEEEC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCC--C-----CCCc--CCceEEECCCCcEEEEE
Confidence 567777776541100 0001222100 0 0012 34679999999877763
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.49 Score=42.15 Aligned_cols=136 Identities=7% Similarity=-0.065 Sum_probs=72.0
Q ss_pred EecCCCCEEEEEc---CCe--EEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeEEEEEcc
Q 010801 225 SNNSDCETFVSAD---DLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR 298 (501)
Q Consensus 225 ~~~~~~~~l~~~~---d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~ 298 (501)
.|+++++.|+-.. ++. |..-+++ +....++ ..+.. ..++|++ +.|+..+. ...|...++.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~l--------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKI--------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEE--------ESSCC----CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEE--------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence 5677888777653 444 4444555 2222222 11211 3467788 66665554 6778888876
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C-CcEEEEEeeCCCCceeEeeccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 375 (501)
.+... +++.. ... ..++|++.+|+-.. + ..|..-++. +.....+....
T Consensus 176 g~~~~----~l~~~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~------ 226 (302)
T 3s25_A 176 SQSEA----LFYDC----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN------ 226 (302)
T ss_dssp TTEEE----EEECS----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC------
T ss_pred CCCEE----EEeCC----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC------
Confidence 65422 22222 122 23569999888553 2 344444443 44444443211
Q ss_pred cccCCCCCcceeeEEEEcCCCcEEEEEeC--CCeEEEEecCCC
Q 010801 376 CDLYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGVG 416 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~ 416 (501)
...|+|++++|.-++. .+.|..-+++..
T Consensus 227 -------------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 227 -------------IEHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp -------------EEEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred -------------cceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 2347788888876533 355666666543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.39 Score=45.68 Aligned_cols=117 Identities=10% Similarity=0.068 Sum_probs=62.7
Q ss_pred cceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC--CCcccceEEEEEecC---CCcEEEEEeC----
Q 010801 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPI---YCNLLAYSSS---- 288 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~---~~~~l~~~~~---- 288 (501)
...+.|+|.|+|+++++- ..+.|++++... +....+..+.. .+ .........|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 456799999999988877 445788887652 32222211111 11 112456789999995 4144444332
Q ss_pred --------CCeEEEEEccCCcc-cccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 289 --------RGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 289 --------dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
...|.-++...... ......++..-. .+.......++|.|||.+.++..
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---------~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---------SSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---------CCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC---------CCCCCCCCeEeECCCCeEEEEEC
Confidence 23566666543211 111112222100 00113478999999998777643
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.19 E-value=1.8 Score=46.52 Aligned_cols=39 Identities=5% Similarity=0.095 Sum_probs=29.7
Q ss_pred cceeEEEEeecCC----CCEEEEeeC-CCeEEEEeccccceeee
Q 010801 114 EKINRVRWCAAPN----GSMFILSTN-DKTIKLWKVRDQKVKKI 152 (501)
Q Consensus 114 ~~V~~v~~~~~~~----~~~l~s~s~-d~~i~lw~~~~~~~~~~ 152 (501)
..|.|+++.+.++ +.+++.|.. |++++|+++.+.+....
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~ 597 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK 597 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE
Confidence 6699999875333 478889986 99999999987554433
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.28 Score=44.92 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=60.0
Q ss_pred cceEEEEecCCCC-EEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC---CCcEEEEEeC------
Q 010801 219 FNINSISNNSDCE-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS------ 288 (501)
Q Consensus 219 ~~v~~l~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~------ 288 (501)
...+.|+|.|+|+ ++++-..+.|++++.. + .....+.-.+............++++|+ +..+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-K-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-T-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-C-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3567899999998 6665577999999854 2 2211110000011122345689999995 3144444332
Q ss_pred -CCeEEEEEccCCccc-ccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 289 -RGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 289 -dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
...|..|++...... .....++..-.... ...| ....++|.|||.+.++.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-----~~~h--~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLS-----TGNH--FGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCB-----SSSC--CCCCEEECSSSEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCC-----CCcc--cCccEEECCCCcEEEEE
Confidence 235666666533110 00011222100000 0112 24679999999766654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.73 Score=40.89 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCCcEEEEEeCC-----CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C----
Q 010801 278 IYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---- 347 (501)
Q Consensus 278 ~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~---- 347 (501)
++ ++++.|+.+ ..+.+||+.+.+- ..-...+..+ .-.+++. -++++++.|. +
T Consensus 159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W--------~~~~~~p~~r--------~~~~~~~-~~~~i~v~GG~~~~~~ 220 (301)
T 2vpj_A 159 SG-VIYCLGGYDGLNILNSVEKYDPHTGHW--------TNVTPMATKR--------SGAGVAL-LNDHIYVVGGFDGTAH 220 (301)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETTTTEE--------EEECCCSSCC--------BSCEEEE-ETTEEEEECCBCSSSB
T ss_pred CC-EEEEECCCCCCcccceEEEEeCCCCcE--------EeCCCCCccc--------ccceEEE-ECCEEEEEeCCCCCcc
Confidence 55 778877764 4588888877532 1101111111 1112222 2566666653 1
Q ss_pred -CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-----CeEEEEecCCCC
Q 010801 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS 417 (501)
Q Consensus 348 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (501)
..+.+||+.+ .+ ...+....... .- ..++. -++++++.|+.+ ..|.+||.++.+
T Consensus 221 ~~~v~~yd~~~-~~-W~~~~~~p~~r----------~~---~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 221 LSSVEAYNIRT-DS-WTTVTSMTTPR----------CY---VGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCCEEEEETTT-TE-EEEECCCSSCC----------BS---CEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cceEEEEeCCC-Cc-EEECCCCCCcc----------cc---eeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 5688999864 32 22232111111 00 12222 267777887765 357888887663
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.93 Score=41.97 Aligned_cols=119 Identities=6% Similarity=0.004 Sum_probs=71.4
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEe
Q 010801 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 355 (501)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~ 355 (501)
..+| .-++++ .++.||.-++.... . .+.+.. +..- --..+..+..+|+|++||..++..|.|-.+
T Consensus 29 ~~n~-t~i~~a-~~n~iR~~~i~~~~-~---Yk~L~~-~~~i--------~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~L 93 (452)
T 3pbp_A 29 SQNG-TRIVFI-QDNIIRWYNVLTDS-L---YHSLNF-SRHL--------VLDDTFHVISSTSGDLLCLFNDNEIFVMEV 93 (452)
T ss_dssp ETTT-TEEEEE-ETTEEEEEETTTCS-S---CEEEEC-TTTC--------CCCTTCEEEECTTSSEEEEECSSEEEEEEC
T ss_pred EcCC-CEEEEE-ECCEEEEEECCCCC-c---ceEEec-Cccc--------ccCceeEEEECCCCCEEEEecCCeEEEEEe
Confidence 3444 444443 35788888877432 1 134433 1000 012578899999999999888889999998
Q ss_pred eCCCCc---------e--eEeeccccccccccccCCCCCcceeeEEEEcCC---CcEEEEEeCCCeEEEEecCCCCc
Q 010801 356 RMDSTP---------V--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 356 ~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
...... + +.+...... ...-..|..+.|+|- +..|++-..|+.|++||+.....
T Consensus 94 P~~~~~~~~~~~~~~~q~~ty~l~~~~---------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~ 161 (452)
T 3pbp_A 94 PWGYSNVEDVSIQDAFQIFHYSIDEEE---------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE 161 (452)
T ss_dssp CTTCSCCCCHHHHHTTEEEEEEGGGCC-----------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS
T ss_pred cCccccCcccccccccceeEEEcCCcc---------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC
Confidence 631111 1 122211100 000112378999995 56899999999999999986433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.57 Score=39.07 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=35.9
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCC-CCcccceEEEEEecCCCcEEEEEeCCCe
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 291 (501)
..+..|.+.|+|.+.++. |+.++-......... .-.. ....+ ...-..-+.+.|.+++ .++++. +|.
T Consensus 135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~-~wl~-~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~ 202 (236)
T 1tl2_A 135 SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQD-NWLA-RATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGK 202 (236)
T ss_dssp GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTC-CHHH-HCEEEESSSGGGEEEEEECTTS-CEEEEE--TTE
T ss_pred CceEEEEECCCceEEEEe-CCcEEecCCCCCCCc-cccc-ccceeccCCcceEEEEEECCCC-cEEEEe--CCe
Confidence 567899999999888888 777544322211100 0000 00001 1222334557788888 666655 663
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.59 E-value=1.3 Score=40.18 Aligned_cols=117 Identities=11% Similarity=0.034 Sum_probs=65.0
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC---CCcEEEEEe--CCCe
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSS--SRGF 291 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~--~dg~ 291 (501)
-...+.|+|.|+|.++++- ..|.|++++.. .+....+..+ +............|+++|+ +..+.++-+ .++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 4567899999999988887 59999999865 2322111111 1112233456789999995 214444322 3456
Q ss_pred EEEEEccCCc----ccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 292 VRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 292 i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
|.-|.+..+. .......++..-. . -..| .-..++|.|||.+.++.
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p---~----~~~H--~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIP---K----GVIH--NGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEEC---C----CSSC--CCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCC---C----CCCc--cCccccCCCCCCEEEEE
Confidence 6666665421 1111112222200 0 0122 35679999999877763
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.19 Score=41.88 Aligned_cols=116 Identities=12% Similarity=-0.026 Sum_probs=63.5
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCC--CCcccceEEEEEecCCCcEEEEEeCCCeEEEEE
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd 296 (501)
..+..++|+|+|.+.++ .++.+.-.+..+... ..-+. ....+ .+-.. -.++.|.|+| .+.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~-~~W~~-s~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDN-DNWMG-RAKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTT-CCHHH-HCEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCc-ccccc-cccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeC
Confidence 36779999999987766 777766655432110 00000 00001 01111 3688999998 76666 569888777
Q ss_pred ccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEE
Q 010801 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 352 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~l 352 (501)
-.+... ..+-. .. . ..-.+-=..+..+.+.|+|.+.+.. ++.++-
T Consensus 114 pP~~~~-----~~Wl~-~a-~---~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 114 PPQSDT-----DNWIA-RA-T---EVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp CCCSTT-----CCHHH-HS-E---EEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred CCcCCC-----Cceec-cc-c---EeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 533211 11110 00 0 0000001357999999999988888 777543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.26 E-value=1.9 Score=40.09 Aligned_cols=189 Identities=7% Similarity=0.053 Sum_probs=104.5
Q ss_pred CcceEEEeccCceeeeeeEeecCCc----ccceEEEEecCCCCEEEE-E---c----CCeEEEEECCCCCeeeeeeecCC
Q 010801 193 NMATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKP 260 (501)
Q Consensus 193 ~~~i~~w~~~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~ 260 (501)
+..+..|+++.. ..+.+.| ..| ...|..-..+++.++++. | . .|.+.+|..+ .+... .
T Consensus 124 ~taVyHWsi~~~--s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ-~----- 193 (494)
T 1bpo_A 124 DNAVYHWSMEGE--SQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQ-P----- 193 (494)
T ss_dssp SSEEEEEESSSS--CCCEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEE-E-----
T ss_pred CCeeEEecccCC--CCchhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccc-h-----
Confidence 445666666542 2344433 222 345666666888887764 3 2 3678899988 33222 2
Q ss_pred CCCCCcccceEEEEEecC--CCcEEEEEeCC---CeEEEEEccCCc--ccccccceeecccccCCCcceeeecccceeEE
Q 010801 261 SNMDDLTEVITSAEFHPI--YCNLLAYSSSR---GFVRLVDMRQSA--LCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (501)
Q Consensus 261 ~~~~~~~~~v~~v~~~p~--~~~~l~~~~~d---g~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 333 (501)
+++|.+.-..+....+ ...+|+.+... +.+++.++.... ......+..+. ..++.. -..-..++
T Consensus 194 --ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fppe~------~~DFPvam 264 (494)
T 1bpo_A 194 --IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPEA------QNDFPVAM 264 (494)
T ss_dssp --ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCTTS------TTCCEEEE
T ss_pred --heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee-eCCccc------ccCceeEE
Confidence 6778665544443311 11355555543 789999885431 00000111121 111111 12334567
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 334 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 334 ~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
..++.-..+..-+ .|-|++||+.+ +.++..-+.....+ ...+-.....-++.....|.|.--.
T Consensus 265 qvs~kygviyviTK~G~i~lyDleT-gt~i~~nrIs~~~i---------------F~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 265 QISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEEETTTTEEEEEETTCEEEEEE
T ss_pred EecccCCEEEEEecCceEEEEeccc-ceeeeeecccCCce---------------EEecccCCCCcEEEEccCceEEEEE
Confidence 7787666665544 49999999997 88877766555443 2334444444566666888887777
Q ss_pred cCCC
Q 010801 413 HGVG 416 (501)
Q Consensus 413 ~~~~ 416 (501)
+++.
T Consensus 329 v~e~ 332 (494)
T 1bpo_A 329 VEEE 332 (494)
T ss_dssp ECTT
T ss_pred Eccc
Confidence 7665
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.47 E-value=2.4 Score=37.45 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=16.3
Q ss_pred CCcEEEEEeCCC-----eEEEEecCCC
Q 010801 395 DGLHFATGSYSN-----LLRIFSHGVG 416 (501)
Q Consensus 395 ~~~~l~s~~~dg-----~i~iwd~~~~ 416 (501)
++++++.|+.++ .+.+||.++.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 677888887653 4888888866
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.25 E-value=3.1 Score=37.82 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=18.2
Q ss_pred cCCCcEEEEEeCCC------eEEEEecCCCCcceE
Q 010801 393 SGDGLHFATGSYSN------LLRIFSHGVGSAGGI 421 (501)
Q Consensus 393 s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~ 421 (501)
..++++++.|+.++ .|.++++++++....
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 34778888888643 356668887755533
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.14 E-value=2.9 Score=37.10 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=74.7
Q ss_pred CCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC--------------C
Q 010801 228 SDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------G 290 (501)
Q Consensus 228 ~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------------g 290 (501)
.++..+..+ +++.|...+.+ +....++ . .. .+--+++++ ..|+.+... .
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l--------~--~~--~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKL--------S--ND--TAMYINADK-NYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT-SCSCEEE--------E--EE--EEEEEEECS-SEEEEEEECC------CCSSCCSE
T ss_pred EeCCEEEEEeCCCCceEEEEcCC-CCCCEEc--------c--CC--ceeeEEEcC-CEEEEEECCCCcccccceeccCCC
Confidence 466666654 35666666665 3333332 1 11 233467888 777666543 3
Q ss_pred eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc---CCcEEEEEeeCCCCceeEeec
Q 010801 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKI 367 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~---~~~i~lwd~~~~~~~~~~~~~ 367 (501)
.|+..++...+. ..+.. -....|++++++|+-.. ++.-.||-+..++.....+..
T Consensus 89 ~Iy~i~~dg~~~-----~~l~~-----------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~ 146 (302)
T 3s25_A 89 SLCRIKRNGHGS-----TVLDP-----------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN 146 (302)
T ss_dssp EEEEEETTSCCC-----EEEEC-----------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES
T ss_pred eEEEEeCCCCcc-----eEeec-----------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC
Confidence 566667665532 11221 12336888999888654 344555555444555555544
Q ss_pred cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecCCCC
Q 010801 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGS 417 (501)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~ 417 (501)
+.. .+++++++.|.-.+. ...|..-++..+.
T Consensus 147 ~~~-------------------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 147 HYL-------------------FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp SCC-------------------CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred CCc-------------------eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 322 234567777775554 6778888877653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.10 E-value=4.1 Score=38.63 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=23.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCC
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~ 64 (501)
...+.|+|.|+|+++++-...+.|++++..++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 45689999999997776543346888775444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.89 E-value=4.8 Score=43.61 Aligned_cols=136 Identities=7% Similarity=0.100 Sum_probs=69.5
Q ss_pred ccceEEEEecCCCCEEEE-E-------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEe--cCCCcEEEEEe
Q 010801 218 DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS 287 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~-~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~ 287 (501)
...|..-..+++.++++. | -.|.+.+|..+ .+.. + .+++|.+....+... +....+++.+.
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~s-Q-------~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVS-Q-------PIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-cccc-h-------hhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 345656666778887654 3 24778888887 2222 1 256776554444432 22113444433
Q ss_pred C---CCeEEEEEccCC-cccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCc
Q 010801 288 S---RGFVRLVDMRQS-ALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 361 (501)
Q Consensus 288 ~---dg~i~~wd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~ 361 (501)
. .+.+++.++... .... ...+..+. ..+|. .-..-..++..++.-..+..-+ .|-|++||+.+ +.+
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~-~~~~~------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~ 292 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTC 292 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccc-cCCcc------cccCcceEEEeccccCEEEEEecCceEEEEeccc-chh
Confidence 3 268888888543 1000 00011111 00010 0112334566676555554444 49999999997 777
Q ss_pred eeEeecccc
Q 010801 362 VATFKIHEH 370 (501)
Q Consensus 362 ~~~~~~~~~ 370 (501)
+..-+....
T Consensus 293 i~~~ris~~ 301 (1630)
T 1xi4_A 293 IYMNRISGE 301 (1630)
T ss_pred hhhccccCC
Confidence 655444443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.72 E-value=3.9 Score=37.05 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=25.0
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCC
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~ 64 (501)
...+.|+|.|||+++++--..|.|++++..++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 46789999999997776544899988875544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.77 E-value=4.9 Score=35.50 Aligned_cols=24 Identities=0% Similarity=0.131 Sum_probs=17.9
Q ss_pred CCcEEEEEeCC-----CeEEEEecCCCCc
Q 010801 395 DGLHFATGSYS-----NLLRIFSHGVGSA 418 (501)
Q Consensus 395 ~~~~l~s~~~d-----g~i~iwd~~~~~~ 418 (501)
++++++.|+.+ ..+.+||.++.+.
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 67888888854 5688899887644
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=91.93 E-value=6.3 Score=34.86 Aligned_cols=147 Identities=11% Similarity=0.076 Sum_probs=70.1
Q ss_pred CCCEEEEE-c-----CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEEc
Q 010801 229 DCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (501)
Q Consensus 229 ~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~ 297 (501)
++++++.| . ...+.+||..+. .-.. +. .++........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~-~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERD-EWHL-VA----PMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTT-EEEE-CC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCC-eEeE-CC----CCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence 55566664 2 246888888733 2211 11 11111111122222 55 777877764 45888888
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-----CcEEEEEeeCCCCceeEeeccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-----~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
.+.+ +..-...+..+ .-.+++.. ++++++.|+ + ..+.+||+.+ . .-..+......
T Consensus 192 ~~~~--------W~~~~~~p~~r--------~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~-~-~W~~~~~~p~~ 252 (308)
T 1zgk_A 192 ERNE--------WRMITAMNTIR--------SGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVET-E-TWTFVAPMKHR 252 (308)
T ss_dssp TTTE--------EEECCCCSSCC--------BSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTT-T-EEEECCCCSSC
T ss_pred CCCe--------EeeCCCCCCcc--------ccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCC-C-cEEECCCCCCC
Confidence 7653 11101111111 11122222 566666653 1 5688999864 2 22222211111
Q ss_pred cccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-----CeEEEEecCCCC
Q 010801 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGS 417 (501)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (501)
.. - .+++.. ++++++.|+.+ ..+.+||+++.+
T Consensus 253 r~----------~---~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 253 RS----------A---LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CB----------S---CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cc----------c---eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 10 0 123332 67777877754 457788887663
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=91.51 E-value=8.9 Score=35.74 Aligned_cols=154 Identities=9% Similarity=0.110 Sum_probs=99.4
Q ss_pred cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccccc
Q 010801 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (501)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 316 (501)
++..|.|.|+.......+. .-..-+.-.+|.. +.++.-. ...+.++|+.+.... +.+..
T Consensus 46 ~~~~vvIiDl~~~~~~~rr-----------pi~AdsAIMnP~~-~iiALra-g~~lQiFnle~K~kl----ks~~~---- 104 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRR-----------PISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM---- 104 (494)
T ss_dssp TCCEEEEEETTSTTSCEEE-----------ECCCSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEE----EEEEC----
T ss_pred CCCeEEEEECCCCCcceec-----------ccccceeeeCCCC-cEEEEec-CCeEEEEchHHhhhh----cceec----
Confidence 3457888888854443321 0112345578987 7777765 789999999987543 33322
Q ss_pred CCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 317 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 317 ~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
...|.-=.|-.+ +.|+--++..|+-|++..+..+...+.-|..... ..+.....+++.
T Consensus 105 ----------~e~VvfWkWis~-~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~-----------~QIInY~~d~~~ 162 (494)
T 1bpo_A 105 ----------TDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQ 162 (494)
T ss_dssp ----------SSCCCEEEEEET-TEEEEECSSEEEEEESSSSCCCEEEEECCGGGTT-----------CEEEEEEECTTS
T ss_pred ----------CCCceEEEecCC-CeEEEEcCCeeEEecccCCCCchhheecchhccc-----------ceEEEEEECCCC
Confidence 234544445443 4566556789999999755678888887766421 223678889999
Q ss_pred cEEEEEe-------CCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 397 LHFATGS-------YSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 397 ~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
++++..+ -.|.+.+|+.+.+ ..+.+++|.........
T Consensus 163 kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~ 206 (494)
T 1bpo_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKM 206 (494)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEEC
T ss_pred CeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEec
Confidence 9877443 2477899998844 55888888776544433
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.61 E-value=12 Score=35.53 Aligned_cols=119 Identities=14% Similarity=0.031 Sum_probs=61.3
Q ss_pred cceEEEEecCCCC--EEEEEcCCeEEEEECCCCCeeeeeeecCCCCCC----CcccceEEEEEecC----CCcEEEEEeC
Q 010801 219 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI----YCNLLAYSSS 288 (501)
Q Consensus 219 ~~v~~l~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~p~----~~~~l~~~~~ 288 (501)
...+.|+|.|+|. +|++-..|.|++++.+.......+.++...... ........|+|+|+ + .+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 4567899999995 555558899999975421111111111111111 12456789999996 4 44443332
Q ss_pred --C----------CeEEEEEccCCc--ccc--cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC
Q 010801 289 --R----------GFVRLVDMRQSA--LCD--HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (501)
Q Consensus 289 --d----------g~i~~wd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~ 347 (501)
+ ..|.-|.+..+. ... ....+++. .. + ...| ....|+|.|||.+.++..|
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~-~~-~-----~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEV-AE-L-----HRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEE-EE-S-----SSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEc-CC-C-----CCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 144446554321 110 11122222 10 0 0123 4688999999987776443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.31 E-value=7.9 Score=34.84 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.0
Q ss_pred CEEEEEecCCcEEEEEecCCcC
Q 010801 45 DYLAVGDRGGRVILFETVGGKN 66 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~ 66 (501)
..+++++.||.|.-+|..+|+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~ 32 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI 32 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE
Confidence 4677888999999999888865
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.09 E-value=13 Score=32.63 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=15.3
Q ss_pred CCCEEEEEecC----CcEEEEEecCC
Q 010801 43 TGDYLAVGDRG----GRVILFETVGG 64 (501)
Q Consensus 43 ~g~~latg~~d----g~i~iw~~~~~ 64 (501)
++.+++.|+.+ ..+.+||..++
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKD 80 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCC
Confidence 56677777754 56777887765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.06 E-value=13 Score=32.57 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=33.5
Q ss_pred CCCEEEEE-cC-----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCC-----eEEEEEc
Q 010801 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDM 297 (501)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~~wd~ 297 (501)
++++++.| .+ ..+.+||..+ .+-.. +. .+.........+. -++ ++++.|+.++ .+.+||+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~-~~----~~~~~r~~~~~~~--~~~-~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTT-NAWRQ-VA----DMNMCRRNAGVCA--VNG-LLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTT-TEEEE-EC----CCSSCCBSCEEEE--ETT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCC-CCEee-CC----CCCCccccCeEEE--ECC-EEEEECCcCCCcccccEEEEcC
Confidence 45666665 43 4688999883 32222 11 1111111112222 255 7888887653 4888888
Q ss_pred cCC
Q 010801 298 RQS 300 (501)
Q Consensus 298 ~~~ 300 (501)
.+.
T Consensus 275 ~~~ 277 (302)
T 2xn4_A 275 TTD 277 (302)
T ss_dssp TTT
T ss_pred CCC
Confidence 775
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.48 E-value=15 Score=32.52 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=16.0
Q ss_pred cCCCcEEEEEeC-C-----CeEEEEEccCC
Q 010801 277 PIYCNLLAYSSS-R-----GFVRLVDMRQS 300 (501)
Q Consensus 277 p~~~~~l~~~~~-d-----g~i~~wd~~~~ 300 (501)
-++ ++++.|+. + ..+.+||+.+.
T Consensus 147 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 147 HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp ETT-EEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred ECC-EEEEEeCCCCCCcccceEEEEeCCCC
Confidence 345 77777776 2 46888898775
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=86.35 E-value=15 Score=40.01 Aligned_cols=154 Identities=9% Similarity=0.114 Sum_probs=92.5
Q ss_pred cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeeccccc
Q 010801 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (501)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 316 (501)
....|.|.|+.......+ ..-..-+.-.+|.. +.++.-. ..++.++|+.+.... +.+..
T Consensus 46 ~~~~vvIidl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~kl----ks~~~---- 104 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM---- 104 (1630)
T ss_pred CCceEEEEECCCCCCccc-----------ccccchhhccCCCc-ceEEEec-CCeEEEeehHHhhhh----ccccc----
Confidence 344788888874443321 11112344578886 7766654 789999999876433 22222
Q ss_pred CCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC
Q 010801 317 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (501)
Q Consensus 317 ~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 396 (501)
..+|.-=.|-. .+.|+-.++..|+-|++..+..|...+.-|.... + ..+..-..+++.
T Consensus 105 ----------~e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~--------~---~QIinY~~d~~~ 162 (1630)
T 1xi4_A 105 ----------TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA--------G---CQIINYRTDAKQ 162 (1630)
T ss_pred ----------CCCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcc--------c---CeeEEeeeCCCC
Confidence 12344334443 3445555568999999974456666666555432 1 122577888888
Q ss_pred cEEEEEe-------CCCeEEEEecCCCCcceEEEecccCcccceee
Q 010801 397 LHFATGS-------YSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (501)
Q Consensus 397 ~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 435 (501)
++++..| -.|.+.+|+++.+ ..+.+++|.........
T Consensus 163 kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKM 206 (1630)
T ss_pred CeEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheecc
Confidence 8877433 3588999998854 44677777665544333
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=86.35 E-value=31 Score=35.09 Aligned_cols=170 Identities=9% Similarity=0.075 Sum_probs=82.8
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC-CCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEc
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~ 297 (501)
..|.++...++|.+.+... +-+.+++... ..... +...... ..-....|.++....+| .+.+ |+..| +.++..
T Consensus 232 ~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~-~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g-~lWi-GT~~G-l~~~~~ 305 (758)
T 3ott_A 232 NSIKSLALDGNGDLLAGTD-NGLYVYHNDT-TPLQH-IIHDSRNIQSLTNNIIWNIFADQEH-NIWL-GTDYG-ISLSRY 305 (758)
T ss_dssp EEEEEEEECTTCCEEEEET-TEEEEECCTT-SCCEE-ECCCTTCTTSCSCSCEEEEEECTTC-CEEE-EESSS-EEEECC
T ss_pred CeEEEEEEcCCCCEEEEeC-CceeEEecCC-CcEEE-EEcCCCCcCcCCcCeEEEEEEcCCC-CEEE-EeCCc-cccccc
Confidence 3577888777887666554 4577888763 22221 1111000 01123568999888877 6544 45556 544432
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCC-CceeEeecccccccccc
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLC 376 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~ 376 (501)
.... +.+.. ..... ......|.++.-..+|.+-+.. .+-+..++..+.. .....+.......
T Consensus 306 -~~~~-----~~~~~-~~~~~-----~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~---- 368 (758)
T 3ott_A 306 -NSAL-----QFIPI-SQITG-----TGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTY---- 368 (758)
T ss_dssp -CC-C-----EEEEH-HHHSC-----SCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSS----
T ss_pred -CCce-----eEEec-ccCCC-----CCCCceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCC----
Confidence 1110 11111 00000 0012457888877788766554 3446666654211 1122222110000
Q ss_pred ccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 377 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.+ .... |.++.-..+|++.+ |+ ++-+..|+..+++
T Consensus 369 ~l-~~~~---v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~ 403 (758)
T 3ott_A 369 PL-SHNR---IRHIYEDKEQQLWI-AT-DGSINRYDYATRQ 403 (758)
T ss_dssp CC-SCSC---EEEEEECTTSCEEE-EE-TTEEEEEETTTTE
T ss_pred CC-CCCc---eEEEEECCCCCEEE-Ee-CCcHhhcCcCCCc
Confidence 00 0111 26777777887655 44 3568889987763
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.92 E-value=19 Score=31.42 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=34.1
Q ss_pred CCCEEEEE-cC-----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEEc
Q 010801 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (501)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~ 297 (501)
++++++.| .+ ..+.+||+.+ ..-.. +. .++........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~-~~W~~-~~----~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHT-GHWTN-VT----PMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTT-TEEEE-EC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCC-CcEEe-CC----CCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeC
Confidence 55666665 33 5688899873 32222 11 11111111122222 45 788887764 46889998
Q ss_pred cCCc
Q 010801 298 RQSA 301 (501)
Q Consensus 298 ~~~~ 301 (501)
.+.+
T Consensus 230 ~~~~ 233 (301)
T 2vpj_A 230 RTDS 233 (301)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8753
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=83.27 E-value=23 Score=31.08 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=33.7
Q ss_pred CCCEEEEE-cC-----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCC-----CeEEEEEc
Q 010801 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (501)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~~wd~ 297 (501)
++++++.| .+ ..+.+||+.+ .. ...+. .+.........+.+ ++ ++++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~~-W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPER-NE-WRMIT----AMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTT-TE-EEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCC-Ce-EeeCC----CCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence 55566665 32 4688889873 32 22111 11111112222332 55 788887764 56889998
Q ss_pred cCC
Q 010801 298 RQS 300 (501)
Q Consensus 298 ~~~ 300 (501)
.+.
T Consensus 239 ~~~ 241 (308)
T 1zgk_A 239 ETE 241 (308)
T ss_dssp TTT
T ss_pred CCC
Confidence 775
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=81.73 E-value=2.5 Score=40.68 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=52.9
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeee--eeecC---CCCCCCcccceEEEEEecCCCcEEEEEeCCCeE
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMK---PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~--~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 292 (501)
....+..+|||++++++ -+.++.++|++.-...+. +++.+ ....+ ..-.....+|.++| +...+...|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceE
Confidence 34467889999999885 799999999883111000 00000 00111 23445788999999 877777889999
Q ss_pred EEEEccCC
Q 010801 293 RLVDMRQS 300 (501)
Q Consensus 293 ~~wd~~~~ 300 (501)
.-|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99999763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 501 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.6 bits (127), Expect = 2e-08
Identities = 37/310 (11%), Positives = 98/310 (31%), Gaps = 25/310 (8%)
Query: 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 162
+ + KSL+ + V++ + +G ++ + +KT ++++V D + D
Sbjct: 52 DVELHKSLDHTSVVCCVKF--SNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108
Query: 163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN 222
EN + +P S + + ++ + K G + I
Sbjct: 109 PENLNTS-------SSPSSDLYIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMIL 159
Query: 223 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282
++ + + + + +++ + S + + +T+ P
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219
Query: 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342
+A S VR+ D L + T S+ + F DGQ +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVER----------LDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402
+S ++ + K ++ + + D + + + + + +G
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS---VATTQNDEYILSG 326
Query: 403 SYSNLLRIFS 412
S + +
Sbjct: 327 SKDRGVLFWD 336
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 47/383 (12%), Positives = 112/383 (29%), Gaps = 62/383 (16%)
Query: 33 DIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91
+V ++F G+YLA G ++ +V + + ++ PE
Sbjct: 63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK-----------DPEN 111
Query: 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK 151
+ S + I V + P+G D+ I++W + ++K+
Sbjct: 112 LNTSSSPSSD------------LYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVM 157
Query: 152 IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK 211
I + + + + + +C
Sbjct: 158 ILQGHEQ------------------DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199
Query: 212 VYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271
++S + D + +W+ E + +D + + + +
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVY 258
Query: 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331
S F + S V+L +++ + + + S + + +
Sbjct: 259 SVVFTR-DGQSVVSGSLDRSVKLWNLQ-----NANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 332 DIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390
+ + +++LS + WD + P+ + H + + N S
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQGHRN--SVISVAVANGSSL----- 364
Query: 391 SVSGDGLHFATGSYSNLLRIFSH 413
+ FATGS RI+ +
Sbjct: 365 --GPEYNVFATGSGDCKARIWKY 385
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.3 bits (121), Expect = 9e-08
Identities = 38/324 (11%), Positives = 89/324 (27%), Gaps = 49/324 (15%)
Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------------KEMD 156
+ RV + P S+ + ++ D TIK+W ++ ++
Sbjct: 17 RSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74
Query: 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH- 215
L + F H I + + +V
Sbjct: 75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 216 ------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268
H + + N D S +D + +W + + + + +
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC---- 190
Query: 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328
+ + E + S ++ + S D + ++ +
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDN 248
Query: 329 SISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387
+ + F + G+ +LS D L++WD + + + T HE +
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAHE------------HFVTS- 294
Query: 388 FECSVSGDGLHFATGSYSNLLRIF 411
+ TGS ++++
Sbjct: 295 --LDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 35/310 (11%), Positives = 84/310 (27%), Gaps = 34/310 (10%)
Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172
KI + W + + + ++ D + +W + ++
Sbjct: 55 LAKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET 232
+ + ++ + C+ + + + +
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 233 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT---------EVITSAEFHPIYCNLL 283
+S + S D + + H N +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343
+ + + D + R+ A+ II I+ + F+ G+ LL
Sbjct: 233 CFFPNGNAF------ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 344 S-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402
+ D N +WD + H+ + + V+ DG+ ATG
Sbjct: 287 AGYDDFNCNVWDAL-KADRAGVLAGHD------------NRVSC---LGVTDDGMAVATG 330
Query: 403 SYSNLLRIFS 412
S+ + L+I++
Sbjct: 331 SWDSFLKIWN 340
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 42/365 (11%), Positives = 96/365 (26%), Gaps = 49/365 (13%)
Query: 61 TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
+G K + H++ + + F P+ H + +L E + V
Sbjct: 6 AMGSKPAYSFHVTADGQMQPVPFP----PDALIGPGIPRH---ARQINTLNHGEVVCAVT 58
Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRD----QKVKKIKEMDHFPFVSS-----ENTLLA-- 169
+ + +K+W + V ++ ++ ++ S + L
Sbjct: 59 IS--NPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
Query: 170 -EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS 228
E + ++ + + E T + A + C + + +
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175
Query: 229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288
+ D + + + +D + D L Y +
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235
Query: 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347
++ + + H + + H S +KFA G+ +S
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL---------SLKFAYCGKWFVSTGKD 286
Query: 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407
L W + K S+ C +S D + TGS
Sbjct: 287 NLLNAWRTP-YGASIFQSKES-------------SSVLS---CDISVDDKYIVTGSGDKK 329
Query: 408 LRIFS 412
++
Sbjct: 330 ATVYE 334
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 36/327 (11%), Positives = 70/327 (21%), Gaps = 43/327 (13%)
Query: 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176
+ V C G+ + ++D T+K+W K + SS+ + +
Sbjct: 17 DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76
Query: 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF--- 233
+ +H + + I
Sbjct: 77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136
Query: 234 ---VSADDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSR 289
V D + D + + + L + S
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 196
Query: 290 GFVRLVDMRQ-------------------------SALCDHSARILRDAAESHGSKSFFT 324
+R+ D+ S D + +I
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256
Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
S N + S D +KLWD++ + E + +
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-TGEFIRNLVTLE-------SGGSGGVV 308
Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIF 411
+ S L A GS +
Sbjct: 309 WR---IRASNTKLVCAVGSRNGTEETK 332
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.001
Identities = 33/306 (10%), Positives = 80/306 (26%), Gaps = 21/306 (6%)
Query: 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166
L+ + + ++ +C + + D TIK+W + K+I H V
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY 63
Query: 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 226
+ S + + + + +
Sbjct: 64 -----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118
Query: 227 NSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286
D + R+ + + + S D T + + L +
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178
Query: 287 SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345
++ D S D++ R+ + D + ++S
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLW----DIECGACLRVLEGHEELVRCIRFDNKRIVSG 234
Query: 346 DYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
Y +K+WD+ P + + ++ +F + D + S+
Sbjct: 235 AYDGKIKVWDLVAALDP----RAPAGTLCLRTLVEHSGRVF-----RLQFDEFQIVSSSH 285
Query: 405 SNLLRI 410
+ + I
Sbjct: 286 DDTILI 291
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.002
Identities = 33/345 (9%), Positives = 81/345 (23%), Gaps = 29/345 (8%)
Query: 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
D +S I+ + L + G + +++ + +S K
Sbjct: 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTD 69
Query: 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152
+ + + E + + A +DK I +V
Sbjct: 70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129
Query: 153 KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKV 212
+ K + + + + +
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189
Query: 213 YPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---- 268
+ ++ S+ D R+ + + +N L
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 269 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325
+ S EF P L + S G + +++ + + +++ A+ +
Sbjct: 250 LAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQ-------TRKKIKNFAKFN-------- 293
Query: 326 IIASISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHE 369
S +K A L K + + I+
Sbjct: 294 ---EDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYI 335
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.9 bits (83), Expect = 0.004
Identities = 17/305 (5%), Positives = 66/305 (21%), Gaps = 25/305 (8%)
Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172
+ I + +G + + I W + ++ H ++ + +
Sbjct: 12 NKAITALSSS--ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG----IKTTS 65
Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET 232
+ H + + V N + ++ + A +
Sbjct: 66 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
Query: 233 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---- 288
+N + + D V + + + +
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185
Query: 289 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347
+ + + E + S+ ++ +
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245
Query: 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407
++ +W++ S K + + + + +
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSS--------------VNSVIWLNETTIVSAGQDSN 291
Query: 408 LRIFS 412
++ ++
Sbjct: 292 IKFWN 296
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.64 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.61 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.39 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.38 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.28 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.26 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.21 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.19 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.16 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.13 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.08 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.05 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.02 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.92 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.9 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.78 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.75 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.72 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.49 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.42 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.41 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.95 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.71 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.35 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.19 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.16 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.13 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.65 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.47 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.92 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.67 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.57 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.27 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.91 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.8 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.74 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.7 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.66 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 92.7 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 91.76 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.63 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 90.23 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 89.67 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 87.71 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 87.19 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 86.65 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 83.61 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 80.48 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-40 Score=305.41 Aligned_cols=285 Identities=15% Similarity=0.203 Sum_probs=228.4
Q ss_pred ccccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
.++|.+.|+|++|+|+|++||+|+ ||.|+|||+.++... .........+|.
T Consensus 47 ~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~----------------------~~~~~~~~~~h~------ 97 (337)
T d1gxra_ 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD------ 97 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT------
T ss_pred ECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc----------------------ceeEEeeecCCC------
Confidence 457999999999999999999997 799999999876432 112233456787
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|.+++|+ |++++|++++.|++|++||+........
T Consensus 98 ------~~I~~v~~s--~dg~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------------- 134 (337)
T d1gxra_ 98 ------NYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIK----------------------------------- 134 (337)
T ss_dssp ------SBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEE-----------------------------------
T ss_pred ------CcEEEEEEc--CCCCEEEEeecccccccccccccccccc-----------------------------------
Confidence 889999998 8999999999999999999876442211
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
..+ ..|...+.+++|+|++.+++++ .|+.|++|++. ....... ...|
T Consensus 135 -----------------------~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~-~~~~~~~-------~~~~ 182 (337)
T d1gxra_ 135 -----------------------AEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGH 182 (337)
T ss_dssp -----------------------EEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCC
T ss_pred -----------------------ccc-cccccccccccccccccccccccccccccccccc-ccccccc-------cccc
Confidence 111 5788899999999999999998 99999999999 4444443 5678
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
...|.+++|++++ +.+++++.|+.|++||+++++.. +.+ .|...|.+++|+|++++|++++
T Consensus 183 ~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~----~~~--------------~~~~~i~~l~~~~~~~~l~~~~ 243 (337)
T d1gxra_ 183 TDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQH--------------DFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEE--------------ECSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccc-cccccccccccccccccccceee----ccc--------------ccccceEEEEEcccccccceec
Confidence 8999999999999 99999999999999999987543 222 2467899999999999999885
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
++.+++||++. .+. .....|...+ ++++|+|++++|++|+.||.|++||+.+++.+ ..
T Consensus 244 ~d~~i~i~d~~~-~~~-~~~~~~~~~i---------------~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~-~~--- 302 (337)
T d1gxra_ 244 ESSNVEVLHVNK-PDK-YQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQ--- 302 (337)
T ss_dssp TTSCEEEEETTS-SCE-EEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EE---
T ss_pred cccccccccccc-ccc-cccccccccc---------------ceEEECCCCCEEEEEeCCCeEEEEECCCCCEE-EE---
Confidence 59999999975 443 3455566554 79999999999999999999999999887432 11
Q ss_pred ccCcccceeeccCCccccCccceeeeecccceeeccccCCcccccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
.+|...|++++|+|++++||+++.|+ ++||+
T Consensus 303 --------------------------------------------~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 303 --------------------------------------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp --------------------------------------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred --------------------------------------------ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 12344788999999999999988654 99996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-39 Score=306.44 Aligned_cols=299 Identities=19% Similarity=0.327 Sum_probs=205.0
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
++|.+.|+||+|+|||++||+|+ |++|+|||+.+++.. ..+.... .....+.........+|.
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~------- 121 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-------ARLSDDS--AANKDPENLNTSSSPSSD------- 121 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-------EEECC-------------------CCC-------
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE-------eeecccc--cccccccccccccccCCC-------
Confidence 46999999999999999999987 899999999877542 0000000 000000111112223444
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|++|+|+ |++++|++|+.||.|++|+...++.....
T Consensus 122 -----~~V~~l~~s--~~~~~l~s~~~dg~v~i~~~~~~~~~~~~----------------------------------- 159 (388)
T d1erja_ 122 -----LYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVMIL----------------------------------- 159 (388)
T ss_dssp -----CBEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CCEEEEEEC--CCCCcceeccccccccccccccccccccc-----------------------------------
Confidence 889999998 78999999999999999999887654432
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.+|...|.++++++++..++++ .++.+++||... ...... .. +.
T Consensus 160 --------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~-------~~-~~ 204 (388)
T d1erja_ 160 --------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLT-------LS-IE 204 (388)
T ss_dssp --------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEE-------EE-CS
T ss_pred --------------------------ccccccccccccccccccccccccceeeeeeeccc-cccccc-------cc-cc
Confidence 6889999999999999999998 999999999994 333332 22 33
Q ss_pred cceEEEEEec-CCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 268 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
....++.+.+ ++ ++|++++.||.|++||.+++.... .+.. ......+|...|.+++|+|++++|++++
T Consensus 205 ~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~----~~~~------~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 205 DGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVE----RLDS------ENESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp SCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEEE----EEC------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccccCCCC-CeEEEEcCCCeEEEeecccCccce----eecc------ccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 3445556665 55 999999999999999999875432 1111 1112346788999999999999999885
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|+.|++||++. .....................+... +++++|+|++++|++|+.||.|++||+.+++. ..++++
T Consensus 274 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-~~~l~~ 348 (388)
T d1erja_ 274 LDRSVKLWNLQN-ANNKSDSKTPNSGTCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQG 348 (388)
T ss_dssp TTSEEEEEEC----------------CEEEEEECCSSC---EEEEEECGGGCEEEEEETTSEEEEEETTTCCE-EEEEEC
T ss_pred CCCcEEEEeccC-Cccccccccccccceeeecccccce---EEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-EEEEeC
Confidence 59999999975 3322221111110000000111112 27999999999999999999999999998854 578999
Q ss_pred ccCcccceeecc
Q 010801 426 GKNENRKPILQA 437 (501)
Q Consensus 426 ~~~~v~~~~~~~ 437 (501)
|.+.|.++++..
T Consensus 349 H~~~V~~~~~~~ 360 (388)
T d1erja_ 349 HRNSVISVAVAN 360 (388)
T ss_dssp CSSCEEEEEECS
T ss_pred CCCCEEEEEEec
Confidence 998888877754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.7e-38 Score=295.32 Aligned_cols=339 Identities=13% Similarity=0.160 Sum_probs=235.7
Q ss_pred ccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 32 ~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
.++|+|++|+|||++||+|+.||.|+|||..+++ ......+++|.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-------------------------~~~~~~l~gH~---------- 51 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN---------- 51 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS----------
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-------------------------EEEEEEecCCC----------
Confidence 5789999999999999999999999999998763 34567889999
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
+.|++|+|+ |++++|++++.|++|++||+.++......
T Consensus 52 --~~V~~l~fs--p~~~~l~s~s~D~~i~vWd~~~~~~~~~~-------------------------------------- 89 (371)
T d1k8kc_ 52 --GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTL-------------------------------------- 89 (371)
T ss_dssp --SCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEE--------------------------------------
T ss_pred --CCEEEEEEC--CCCCEEEEEECCCeEEEEeeccccccccc--------------------------------------
Confidence 999999998 78999999999999999999876543322
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
.+ .+|...|.+++|+|+++.|++| .|+.|++|+++......... .....|...|
T Consensus 90 --------------------~~-~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~----~~~~~~~~~v 144 (371)
T d1k8kc_ 90 --------------------VI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKKPIRSTV 144 (371)
T ss_dssp --------------------EC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECTTCCSCE
T ss_pred --------------------cc-ccccccccccccccccccceeecccCcceeeeeeccccccccc----cccccccccc
Confidence 11 5788899999999999999999 99999999987444322111 1256788999
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccC--CCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.+++|+|++ ++|++|+.|+.|++||................ ...+ .......+|...|.+++|+|++++|++++ |
T Consensus 145 ~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d 222 (371)
T d1k8kc_ 145 LSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG-SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 222 (371)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTB-SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ccccccccc-cceeccccCcEEEEEeeccCcccccccccccc-ccccceeeeeeccCccCcEEEEEeecccccccccccC
Confidence 999999999 99999999999999998775432211000000 0000 11112356888999999999999999885 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+.|++||+.. ++.+..+..|...+ .+++|+|++++|++|+ |+.+++|..+..... ..+..+.
T Consensus 223 ~~i~iwd~~~-~~~~~~~~~~~~~v---------------~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~-~~~~~~~ 284 (371)
T d1k8kc_ 223 STVCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAGH-DCFPVLFTYDSAAGK-LSFGGRL 284 (371)
T ss_dssp TEEEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEET-TSSCEEEEEETTTTE-EEECCCC
T ss_pred CcceEEeeec-ccceeeeecccccc---------------eeeeecCCCCEEEEEc-CCceEEEEeeCCCce-EEEeeee
Confidence 9999999986 88888888887765 7899999998887655 777777766554322 2222221
Q ss_pred Ccccceeecc-CCccccCccceeeeecccce-eec-cccCCcccccccCCCeEEEEEccCCC----EEEEee-CCeEEEE
Q 010801 428 NENRKPILQA-APRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTN----LIACAN-GNSLFFH 499 (501)
Q Consensus 428 ~~v~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~iw-~~~~~~~~~~~~~~~i~~~~~sp~~~----~la~~~-~~~~~i~ 499 (501)
.......... .....+ . ..+.. ... ...........|...|++++++|.+. .+++++ ++.++||
T Consensus 285 ~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW 356 (371)
T d1k8kc_ 285 DVPKQSSQRGLTARERF------Q--NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356 (371)
T ss_dssp CCC--------CHHHHH------H--HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred cCccccccccccceeeE------e--cccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEE
Confidence 1110000000 000000 0 00000 000 00011112235888999999988653 588888 4559999
Q ss_pred e
Q 010801 500 Y 500 (501)
Q Consensus 500 ~ 500 (501)
+
T Consensus 357 ~ 357 (371)
T d1k8kc_ 357 D 357 (371)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-37 Score=282.19 Aligned_cols=281 Identities=18% Similarity=0.251 Sum_probs=238.1
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|.+.|++|+|+|++++||||+.||+|+|||+.+++.. ..+++|.
T Consensus 14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~---------------------------~~~~~h~------- 59 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------------RTLKGHT------- 59 (317)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------------EEECCCS-------
T ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE---------------------------EEEeCCC-------
Confidence 369999999999999999999999999999999987654 6788998
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|.+++|+ +++.++++++.++.+.+|+....+.....
T Consensus 60 -----~~V~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 97 (317)
T d1vyhc1 60 -----DSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRTM----------------------------------- 97 (317)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSCCCEEETTSSCEEECC-----------------------------------
T ss_pred -----CcEEEEeee--ccccccccccccccccccccccccccccc-----------------------------------
Confidence 899999998 78999999999999999998776533321
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..|...+.++.|+|+++.++++ .|+.+++||+++. ..... +.+|.
T Consensus 98 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~-------~~~~~ 143 (317)
T d1vyhc1 98 --------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKT-------FTGHR 143 (317)
T ss_dssp --------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEE-------EECCS
T ss_pred --------------------------ccccccceeeeccCCCceEEeeccCcceeEeecccc-eeeeE-------EccCC
Confidence 5788899999999999999998 9999999999944 44443 56788
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC---------
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------- 338 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--------- 338 (501)
..+.+++|+|++ ++|++++.|+.|++|++.+++.. ..+.. |...+..+.++|+
T Consensus 144 ~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~ 205 (317)
T d1vyhc1 144 EWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AELRE-------------HRHVVECISWAPESSYSSISEA 205 (317)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECCSCGGGGGGGC
T ss_pred CcceeeecccCC-CEEEEEeCCCeEEEEeeccceee----EEEec-------------CCCCceEEEEeeccccceeecc
Confidence 899999999999 99999999999999999887543 22222 3445666666554
Q ss_pred -----------CCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 339 -----------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 339 -----------~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
+.++++++ |+.|++||+++ ++++..+.+|...+ .+++|+|++++|++|+.||
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~s~~~dg 269 (317)
T d1vyhc1 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDK 269 (317)
T ss_dssp CSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTT
T ss_pred ccceeeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCCCE---------------EEEEECCCCCEEEEEECCC
Confidence 45677775 69999999986 88899999888765 7899999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
.|+|||+.+++. ..++.+|..+|.+++|++ ++++ |++|+.|+. ++|+
T Consensus 270 ~i~iwd~~~~~~-~~~~~~h~~~V~~~~~s~--~~~~-----l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 270 TLRVWDYKNKRC-MKTLNAHEHFVTSLDFHK--TAPY-----VVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEECCTTSCC-CEEEECCSSCEEEEEECS--SSSC-----EEEEETTSEEEEEC
T ss_pred eEEEEECCCCcE-EEEEcCCCCCEEEEEEcC--CCCE-----EEEEeCCCeEEEeC
Confidence 999999998854 589999999999999998 6777 999999999 9983
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-36 Score=277.76 Aligned_cols=290 Identities=12% Similarity=0.131 Sum_probs=223.8
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.+.+.+.+++++|+|+.||.+. ++.|.+|++.+++.. ..+.+|.
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~---------------------------~~~~~H~-------- 58 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT---------------------------EIYTEHS-------- 58 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC---------------------------EEECCCS--------
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee---------------------------EEEcCCC--------
Confidence 3456778899999999999875 678999999876543 6678999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|++++|+ |+|++|++|+.||+|++||+.++......
T Consensus 59 ----~~v~~~~~s--p~g~~latg~~dg~i~iwd~~~~~~~~~~------------------------------------ 96 (311)
T d1nr0a1 59 ----HQTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTHILKT------------------------------------ 96 (311)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSEEEEEESSSTTCCEEE------------------------------------
T ss_pred ----CCEEEEEEe--CCCCeEeccccCceEeeeeeecccccccc------------------------------------
Confidence 889999998 78999999999999999999876532211
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c--CCeEEEEECCCCCeeeeeeecCCCCCCCc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (501)
.+ ..|...|.+++|+|++++|+++ . +..+++|++++. +... .+.+|
T Consensus 97 ----------------------~~-~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~-~~~~-------~l~~h 145 (311)
T d1nr0a1 97 ----------------------TI-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNG-------NLTGQ 145 (311)
T ss_dssp ----------------------EE-ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCB-------CCCCC
T ss_pred ----------------------cc-ccccCccccccccccccccccccccccccccccccccc-cccc-------ccccc
Confidence 11 5788999999999999999886 4 567999999944 3333 37789
Q ss_pred ccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 267 ~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
...|++++|+|++..+|++|+.||.|++||+++++.. ..+ .+|...|.++.|+|++++|++++
T Consensus 146 ~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~----~~~-------------~~~~~~i~~v~~~p~~~~l~~~~ 208 (311)
T d1nr0a1 146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK----STF-------------GEHTKFVHSVRYNPDGSLFASTG 208 (311)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccceeeecccccccccccccccccccc----ccc-------------ccccccccccccCcccccccccc
Confidence 9999999999998446889999999999999987533 222 34678999999999999999885
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|+.|++||... +.....+....... ..+... |++++|+|++++|++|+.||.|+|||+.+++ +..++..
T Consensus 209 ~d~~v~~~d~~~-~~~~~~~~~~~~~~-----~~h~~~---V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~-~~~~l~~ 278 (311)
T d1nr0a1 209 GDGTIVLYNGVD-GTKTGVFEDDSLKN-----VAHSGS---VFGLTWSPDGTKIASASADKTIKIWNVATLK-VEKTIPV 278 (311)
T ss_dssp TTSCEEEEETTT-CCEEEECBCTTSSS-----CSSSSC---EEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEEC
T ss_pred cccccccccccc-cccccccccccccc-----cccccc---ccccccCCCCCEEEEEeCCCeEEEEECCCCc-EEEEEEC
Confidence 69999999985 66665554322110 011112 2799999999999999999999999999884 4477776
Q ss_pred ccCc-ccceeeccCCccccCccceeeeecccce-eeccc
Q 010801 426 GKNE-NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 462 (501)
Q Consensus 426 ~~~~-v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~ 462 (501)
|... ...+.+.+ .+.. |++++.||. .+|+.
T Consensus 279 ~~~~~~~~~~~~~--~~~~-----l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 279 GTRIEDQQLGIIW--TKQA-----LVSISANGFINFVNP 310 (311)
T ss_dssp CSSGGGCEEEEEE--CSSC-----EEEEETTCCEEEEET
T ss_pred CCCccceEEEEEe--cCCE-----EEEEECCCEEEEEeC
Confidence 6543 23334444 3334 788888988 88854
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.4e-36 Score=275.83 Aligned_cols=252 Identities=13% Similarity=0.192 Sum_probs=203.9
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.. ....+.+|.
T Consensus 55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~-------------------------~~~~~~~~~------- 102 (311)
T d1nr0a1 55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS------- 102 (311)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS-------
T ss_pred cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc-------------------------ccccccccc-------
Confidence 368999999999999999999999999999999877542 445678898
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeC--CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~--d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
+.|.+++|+ +++++|++++. ++.+++|++++++.....
T Consensus 103 -----~~v~~v~~s--~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l--------------------------------- 142 (311)
T d1nr0a1 103 -----GPVKDISWD--SESKRIAAVGEGRERFGHVFLFDTGTSNGNL--------------------------------- 142 (311)
T ss_dssp -----SCEEEEEEC--TTSCEEEEEECCSSCSEEEEETTTCCBCBCC---------------------------------
T ss_pred -----Ccccccccc--ccccccccccccccccccccccccccccccc---------------------------------
Confidence 889999998 78999999875 566999999876643321
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE-EEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+|...|.+++|+|++++ |++| .|+.|++||++ ..+.... +.
T Consensus 143 ----------------------------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~-~~~~~~~-------~~ 186 (311)
T d1nr0a1 143 ----------------------------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKST-------FG 186 (311)
T ss_dssp ----------------------------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEE-------EC
T ss_pred ----------------------------cccccccccccccccceeeeccccccccccccccc-ccccccc-------cc
Confidence 688899999999999885 6778 99999999999 4444443 57
Q ss_pred CcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
.|...|+++.|+|++ ++|++++.|+.|++||++++... ..+.. ......+|...|.+++|+|++++|++
T Consensus 187 ~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~------~~~~~~~h~~~V~~~~~s~~~~~l~t 255 (311)
T d1nr0a1 187 EHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIAS 255 (311)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccCccc-ccccccccccccccccccccccc----ccccc------cccccccccccccccccCCCCCEEEE
Confidence 789999999999999 99999999999999999887543 22221 11223568899999999999999999
Q ss_pred Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 345 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|+ |+.|+|||+++ ++++.++..+..... ..+.+.+++.+|++++.||.|++||.+
T Consensus 256 gs~Dg~v~iwd~~t-~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 256 ASADKTIKIWNVAT-LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EETTSEEEEEETTT-TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EeCCCeEEEEECCC-CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 86 69999999986 888888877654321 233444456689999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-35 Score=272.29 Aligned_cols=282 Identities=15% Similarity=0.206 Sum_probs=236.8
Q ss_pred EeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCc
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
...|+||. +.|++|+|+ |++++|++|+.||+|+|||+.+++.....
T Consensus 10 ~~~L~GH~------------~~I~~l~~s--p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-------------------- 55 (317)
T d1vyhc1 10 KYALSGHR------------SPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTL-------------------- 55 (317)
T ss_dssp SCEEECCS------------SCEEEEEEC--SSSSEEEEEESSSCEEEEETTTCCCCEEE--------------------
T ss_pred cEEEcCCC------------CCeEEEEEc--CCCCEEEEEeCCCeEEEEECCCCCEEEEE--------------------
Confidence 35789999 999999998 78999999999999999999987754432
Q ss_pred cccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCee
Q 010801 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 252 (501)
.+|...|.+++|+|++..++++ .++.+.+|+.......
T Consensus 56 -----------------------------------------~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (317)
T d1vyhc1 56 -----------------------------------------KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94 (317)
T ss_dssp -----------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred -----------------------------------------eCCCCcEEEEeeecccccccccccccccccccccccccc
Confidence 6889999999999999999998 9999999998844433
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
. .+..|...+.++.|+|++ +.+++++.|+.+++||+++++.. ..+. +|...+..
T Consensus 95 ~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~----~~~~-------------~~~~~~~~ 148 (317)
T d1vyhc1 95 R--------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KTFT-------------GHREWVRM 148 (317)
T ss_dssp E--------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEEE
T ss_pred c--------ccccccccceeeeccCCC-ceEEeeccCcceeEeecccceee----eEEc-------------cCCCccee
Confidence 2 267788999999999999 99999999999999999987543 3333 35678999
Q ss_pred EEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcC-----------------
Q 010801 333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG----------------- 394 (501)
Q Consensus 333 ~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------------- 394 (501)
++|+|++++|++++ |+.|++|++.+ .+.+..+.++...+ ..++|+|
T Consensus 149 ~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~~~~~ 212 (317)
T d1vyhc1 149 VRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVV---------------ECISWAPESSYSSISEATGSETKK 212 (317)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECCSCGGGGGGGCCSCC---
T ss_pred eecccCCCEEEEEeCCCeEEEEeecc-ceeeEEEecCCCCc---------------eEEEEeeccccceeeccccceeee
Confidence 99999999999886 59999999986 77777787776654 3444443
Q ss_pred ---CCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCccc
Q 010801 395 ---DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHEL 468 (501)
Q Consensus 395 ---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~ 468 (501)
++.++++++.|+.|++|++.+++ ...++.+|...+.+++++| ++++ |++|+.|+. .+|+. .+.+..
T Consensus 213 ~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~--~~~~-----l~s~~~dg~i~iwd~~~~~~~~~ 284 (317)
T d1vyhc1 213 SGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHS--GGKF-----ILSCADDKTLRVWDYKNKRCMKT 284 (317)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECS--SSSC-----EEEEETTTEEEEECCTTSCCCEE
T ss_pred eccCCceeEeccCCCEEEEEECCCCc-EEEEEeCCCCCEEEEEECC--CCCE-----EEEEECCCeEEEEECCCCcEEEE
Confidence 45689999999999999999884 4588999999999999998 6777 999999999 99954 345666
Q ss_pred ccccCCCeEEEEEccCCCEEEEeeCCe-EEEEe
Q 010801 469 SYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 500 (501)
Q Consensus 469 ~~~~~~~i~~~~~sp~~~~la~~~~~~-~~i~~ 500 (501)
...|...|++++|+|++++||+|+.|+ ++||.
T Consensus 285 ~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 285 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 678999999999999999999999665 99995
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7e-36 Score=277.46 Aligned_cols=286 Identities=17% Similarity=0.287 Sum_probs=215.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|.+.|++|+|+|++++||+|+.||+|+|||+.+++. ...+.+|.
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~---------------------------~~~~~~~~-------- 97 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------------------------VHAIPLRS-------- 97 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSC--------
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee---------------------------EEEEeccc--------
Confidence 5999999999999999999999999999999987653 46788898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ |++.++++++.|+.+++|+................ ...............+. .
T Consensus 98 ----~~v~~v~~~--~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~ 159 (340)
T d1tbga_ 98 ----SWVMTCAYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG----------HTGYLSCCRFLDDNQIV--T 159 (340)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECC----------CSSCEEEEEEEETTEEE--E
T ss_pred ----ccEEeeEee--ccceeeeeecccceeecccccccccccccceeccc----------ccccccccccccccccc--c
Confidence 889999998 89999999999999999998764322111000000 00000000000000000 0
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
...+.....+.......... . ..+...+....+.+.+.++++| .|+.|++||++ ....... +.+|..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~-~~~~~~~-------~~~h~~ 227 (340)
T d1tbga_ 160 SSGDTTCALWDIETGQQTTT---F-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQT-------FTGHES 227 (340)
T ss_dssp EETTTEEEEEETTTTEEEEE---E-ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TTEEEEE-------ECCCSS
T ss_pred cccccccccccccccccccc---c-cccceeEeeeccccccceeEEeecCceEEEEECC-CCcEEEE-------EeCCCC
Confidence 11233445555444322111 1 4567788899999999999999 99999999999 4455543 678999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|++++|+|++ ++|++++.||.|++||++..... ..+.. ..|...+.+++|+|++++|++|+ |
T Consensus 228 ~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~----~~~~~-----------~~~~~~i~~~~~s~~~~~l~~g~~d 291 (340)
T d1tbga_ 228 DINAICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECSSSCEEEEEETT
T ss_pred CeEEEEECCCC-CEEEEEeCCCeEEEEeecccccc----ccccc-----------ccccCceEEEEECCCCCEEEEEECC
Confidence 99999999999 99999999999999999876543 22221 12356799999999999999986 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
|.|++||+.+ ++++..+.+|...+ ++++|+|++++|++|+.||.|+|||
T Consensus 292 g~i~iwd~~~-~~~~~~~~~H~~~V---------------~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 292 FNCNVWDALK-ADRAGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999986 89999999998865 7999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-35 Score=269.24 Aligned_cols=245 Identities=15% Similarity=0.207 Sum_probs=190.4
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeee-ccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~ 107 (501)
.+|.+.|++++|+|+|++||+|+.||+|++||+.+++. ...+ .+|.
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~h~------ 55 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------------------NRVFPDVHA------ 55 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EECSSCSCS------
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------------------------EEEEcCCCC------
Confidence 46999999999999999999999999999999987754 2334 4677
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..|++++|+ |++. +++++.|+.+++|+..........
T Consensus 56 ------~~v~~v~~~--~~g~-~~~~~~d~~v~~~~~~~~~~~~~~---------------------------------- 92 (299)
T d1nr0a2 56 ------TMITGIKTT--SKGD-LFTVSWDDHLKVVPAGGSGVDSSK---------------------------------- 92 (299)
T ss_dssp ------SCEEEEEEC--TTSC-EEEEETTTEEEEECSSSSSSCTTS----------------------------------
T ss_pred ------CcEEEEEee--ccce-eecccceeeEEEeccCCccccccc----------------------------------
Confidence 889999997 6665 567778999999998754321100
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
.....+...+.+++|+++++.++++.++.+++|+.. +.... ...
T Consensus 93 ------------------------~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~---~~~~~---------~~~ 136 (299)
T d1nr0a2 93 ------------------------AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEV---------PIS 136 (299)
T ss_dssp ------------------------CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT---EEEEE---------ECS
T ss_pred ------------------------cccccccccccccccccccccccccccccccccccc---ccccc---------ccc
Confidence 000356678889999999998888877899999965 22221 123
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..+.+++|+|++ ++|++++.||.|++||+++++.. .. . ...|...|.+++|+|++++|++++
T Consensus 137 ~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~----~~-~-----------~~~~~~~i~~~~~~~~~~~l~~~~~ 199 (299)
T d1nr0a2 137 YNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVS----EV-K-----------TIVHPAEITSVAFSNNGAFLVATDQ 199 (299)
T ss_dssp SCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEE----EE-E-----------EEECSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccc-ccccccccccccccccccccccc----cc-c-----------ccccccccccccccccccccccccc
Confidence 457889999998 99999999999999999876432 11 1 124678899999999999999886
Q ss_pred CCcEEEEEeeCCCCce---eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 347 YMNLKLWDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
++.|++||+.+ +... ..+.+|...+ ++++|+|++++|++|+.||.|+|||+.++..
T Consensus 200 d~~i~~~~~~~-~~~~~~~~~~~~h~~~v---------------~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 200 SRKVIPYSVAN-NFELAHTNSWTFHTAKV---------------ACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp TSCEEEEEGGG-TTEESCCCCCCCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred ccccccccccc-ccccccccccccccccc---------------ccccccccccceEEEcCCCEEEEEECCCCCc
Confidence 59999999975 4433 3344555544 7899999999999999999999999987643
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-34 Score=265.43 Aligned_cols=240 Identities=18% Similarity=0.260 Sum_probs=202.6
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++++|+|+|++||+|+.||.|++||+.... .+....+.+|.
T Consensus 94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~------- 141 (337)
T d1gxra_ 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-------------------------PRIKAELTSSA------- 141 (337)
T ss_dssp SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------------EEEEEEECSS-------
T ss_pred cCCCCcEEEEEEcCCCCEEEEeecccccccccccccc-------------------------ccccccccccc-------
Confidence 3688999999999999999999999999999987542 23556678888
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|..++|+ +++.++++++.|+.|++|++.+++.....
T Consensus 142 -----~~v~~~~~~--~~~~~l~s~~~d~~i~~~~~~~~~~~~~~----------------------------------- 179 (337)
T d1gxra_ 142 -----PACYALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQF----------------------------------- 179 (337)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----ccccccccc--ccccccccccccccccccccccccccccc-----------------------------------
Confidence 789999997 78999999999999999999887654332
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..|...|.+++|++++..+++| .|+.+++||++ .++.+.. ..|.
T Consensus 180 --------------------------~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~-~~~~~~~--------~~~~ 224 (337)
T d1gxra_ 180 --------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQ--------HDFT 224 (337)
T ss_dssp --------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEE--------EECS
T ss_pred --------------------------cccccccccccccccccccccccccccccccccc-cceeecc--------cccc
Confidence 5788899999999999999999 99999999998 4444443 2467
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
..|.+++|+|++ ++|++++.|+.|++||+++++.. .. ..|...|.+++|+|++++|++++
T Consensus 225 ~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~-------~~-----------~~~~~~i~~v~~s~~g~~l~s~s~ 285 (337)
T d1gxra_ 225 SQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKY-------QL-----------HLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEE-------EE-----------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred cceEEEEEcccc-cccceeccccccccccccccccc-------cc-----------cccccccceEEECCCCCEEEEEeC
Confidence 889999999999 99999999999999999876432 11 23578899999999999999885
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
|+.|++||+.+ ++.+..+. |...+ ++++|+|++++|++|+.||+|+|||+
T Consensus 286 Dg~i~iwd~~~-~~~~~~~~-~~~~v---------------~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 286 DNLLNAWRTPY-GASIFQSK-ESSSV---------------LSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSEEEEEETTT-CCEEEEEE-CSSCE---------------EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEEECCC-CCEEEEcc-CCCCE---------------EEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 59999999986 77776665 44433 78999999999999999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.6e-33 Score=260.28 Aligned_cols=319 Identities=12% Similarity=0.209 Sum_probs=233.0
Q ss_pred cccccce-EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v-~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
-+|.+.| +|++| +|++||||+.||+|+|||+.+++ .+.++++|+
T Consensus 9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~------ 53 (355)
T d1nexb2 9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------ 53 (355)
T ss_dssp ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE---------------------------EEEEEECCS------
T ss_pred CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEECCC------
Confidence 3688875 66655 68899999999999999998765 457889999
Q ss_pred cccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
+.|++|+|+ + +.+|++++.|++|++|+....+.......
T Consensus 54 ------~~V~~l~~s--~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~-------------------------------- 92 (355)
T d1nexb2 54 ------GGVWALKYA--H-GGILVSGSTDRTVRVWDIKKGCCTHVFEG-------------------------------- 92 (355)
T ss_dssp ------SCEEEEEEE--T-TTEEEEEETTCCEEEEETTTTEEEEEECC--------------------------------
T ss_pred ------CCEEEEEEc--C-CCEEEEEeccccccccccccccccccccc--------------------------------
Confidence 999999997 4 46899999999999999988765443211
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeec--------
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM-------- 258 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~-------- 258 (501)
..+........+.+++..++++ .|+.|++||+............
T Consensus 93 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d1nexb2 93 ---------------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145 (355)
T ss_dssp ---------------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred ---------------------------ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence 2333445566778899999998 9999999999843321110000
Q ss_pred CCC-------CCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccccee
Q 010801 259 KPS-------NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (501)
Q Consensus 259 ~~~-------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 331 (501)
... ....|...+. .+.+++ ++++++..|+.|++||+++++.. .... ++...+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~----~~~~-------------~~~~~~~ 205 (355)
T d1nexb2 146 TPEENPYFVGVLRGHMASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILS-------------GHTDRIY 205 (355)
T ss_dssp CTTTCTTEEEEEECCSSCEE--EEEEET-TEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEE
T ss_pred ccccccceeeeeeecccccc--cccccc-ceeeeecccceeeeeecccccce----eeee-------------ccccccc
Confidence 000 0111223333 345667 89999999999999999887543 2222 2456789
Q ss_pred EEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEE
Q 010801 332 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (501)
Q Consensus 332 ~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~i 410 (501)
++.++|++.++++++ |+.|++||+++ +..+..+.+|...+ .+++|+ +++|++|+.||.|++
T Consensus 206 ~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~~~~~dg~i~i 267 (355)
T d1nexb2 206 STIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRG 267 (355)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCC---------------CEEEEC--SSEEEEECTTSEEEE
T ss_pred cccccccceeeecccccceEEeeeccc-cccccccccccccc---------------cccccc--cceeeeeeccccccc
Confidence 999999999999885 59999999986 88889999888765 678886 469999999999999
Q ss_pred EecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcc-cccccCCCeEEEEEccCCC
Q 010801 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHE-LSYNLSSKLLHLAWHPTTN 486 (501)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~-~~~~~~~~i~~~~~sp~~~ 486 (501)
||+.+.. ..+..|...+..+.+.+. ++++ +++| .|+. ++|+. ++.+. ...+|..+|++++|+|+ .
T Consensus 268 wd~~~~~---~~~~~~~~~~~~~~~~~~-~~~~-----l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~ 336 (355)
T d1nexb2 268 WDANDYS---RKFSYHHTNLSAITTFYV-SDNI-----LVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-T 336 (355)
T ss_dssp EETTTCC---EEEEEECTTCCCCCEEEE-CSSE-----EEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-E
T ss_pred ccccccc---eecccccCCceEEEEEcC-CCCE-----EEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-e
Confidence 9998763 556778888877766553 4555 5555 5778 99954 34443 45678899999999987 4
Q ss_pred EEEEeeCCe-EEEE
Q 010801 487 LIACANGNS-LFFH 499 (501)
Q Consensus 487 ~la~~~~~~-~~i~ 499 (501)
++++++.|+ ++||
T Consensus 337 ~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 337 LVAAVEKDGQSFLE 350 (355)
T ss_dssp EEEEEESSSCEEEE
T ss_pred EEEEEECCCcEEEE
Confidence 666777554 6666
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-32 Score=255.70 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=233.3
Q ss_pred CceeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccc
Q 010801 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (501)
Q Consensus 89 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (501)
...+..++|+||. +.|++|+|+ |++++|++|+.||+|++||+.+++.....
T Consensus 43 ~~~~~~~tL~GH~------------~~I~~l~~s--~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~--------------- 93 (340)
T d1tbga_ 43 IQMRTRRTLRGHL------------AKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAI--------------- 93 (340)
T ss_dssp CCCCEEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEEE---------------
T ss_pred cceeeeEEECCCC------------CCEEEEEEC--CCCCEEEEEECCCceeeeecccceeEEEE---------------
Confidence 3556778899999 999999998 79999999999999999999987755432
Q ss_pred cccCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECC
Q 010801 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (501)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~ 247 (501)
..|...|.+++|+|++.++++| .|+.+++|+..
T Consensus 94 ----------------------------------------------~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~ 127 (340)
T d1tbga_ 94 ----------------------------------------------PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp ----------------------------------------------ECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred ----------------------------------------------ecccccEEeeEeeccceeeeeecccceeeccccc
Confidence 5788999999999999999999 99999999987
Q ss_pred CCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecc
Q 010801 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (501)
......... ..+.+|...........+ ..+.....+.....++....... ... ..+.
T Consensus 128 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~~~ 184 (340)
T d1tbga_ 128 TREGNVRVS----RELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQT----TTF-------------TGHT 184 (340)
T ss_dssp SSCSCCCEE----EEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEE----EEE-------------ECCS
T ss_pred ccccccccc----eecccccccccccccccc--ccccccccccccccccccccccc----ccc-------------cccc
Confidence 433222111 124567666666655554 57888888999999988765322 111 1234
Q ss_pred cceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 328 ~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
..+....+.+.+.+++++. ++.|++||+++ ++++..+.+|...+ ++++|+|++++|++|+.||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~~h~~~i---------------~~v~~~p~~~~l~s~s~d~ 248 (340)
T d1tbga_ 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDI---------------NAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTS
T ss_pred eeEeeeccccccceeEEeecCceEEEEECCC-CcEEEEEeCCCCCe---------------EEEEECCCCCEEEEEeCCC
Confidence 6788899999999999885 59999999986 88888999888765 7999999999999999999
Q ss_pred eEEEEecCCCCcce-EEEecccCcccceeeccCCccccCccceeeeecccce-eeccc--cCCcccccccCCCeEEEEEc
Q 010801 407 LLRIFSHGVGSAGG-ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWH 482 (501)
Q Consensus 407 ~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~--~~~~~~~~~~~~~i~~~~~s 482 (501)
.|++|++....... .....+...+..+++++ ++++ |++|+.|+. .+|+. .+.+....+|...|++++|+
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s 321 (340)
T d1tbga_ 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSK--SGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECS--SSCE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred eEEEEeecccccccccccccccCceEEEEECC--CCCE-----EEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence 99999998774432 12346667789999998 6777 999999999 99954 45556677899999999999
Q ss_pred cCCCEEEEeeCC-eEEEEe
Q 010801 483 PTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 483 p~~~~la~~~~~-~~~i~~ 500 (501)
|++++||+|+.| .++||+
T Consensus 322 ~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEccCCEEEEeC
Confidence 999999999855 599996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-33 Score=265.50 Aligned_cols=260 Identities=16% Similarity=0.240 Sum_probs=198.2
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|...|++++|+|+|++|++|+.||.|++|+...++ ....+.+|.
T Consensus 119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~---------------------------~~~~~~~h~-------- 163 (388)
T d1erja_ 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE-------- 163 (388)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCCCEEEEEECCCCCcceecccccccccccccccc---------------------------ccccccccc--------
Confidence 578889999999999999999999999999988664 346678898
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..|.+++|+ +++..+++++.++.+++||..+.......
T Consensus 164 ----~~v~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------ 201 (388)
T d1erja_ 164 ----QDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTL------------------------------------ 201 (388)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEE------------------------------------
T ss_pred ----ccccccccc--cccccccccccceeeeeeecccccccccc------------------------------------
Confidence 889999997 78899999999999999999876644322
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..+...+....+.+++.+|++| .|+.|++||.... .....+........+|..
T Consensus 202 -------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~h~~ 255 (388)
T d1erja_ 202 -------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKD 255 (388)
T ss_dssp -------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSS
T ss_pred -------------------------ccccccccccccCCCCCeEEEEcCCCeEEEeecccC-ccceeeccccccccCCCC
Confidence 2333333334445588999998 9999999999944 444433333334567899
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.|.+++|+|++ ++|++++.||.|++||+++...... ... ............|...|.+++|+|++++|++|+ |
T Consensus 256 ~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d 329 (388)
T d1erja_ 256 SVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329 (388)
T ss_dssp CEEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred CEEEEEECCCC-CEEEEEECCCcEEEEeccCCccccc----ccc-ccccceeeecccccceEEEEEECCCCCEEEEEeCC
Confidence 99999999999 9999999999999999987654311 111 111111223456788999999999999999986 5
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEE------EcCCCcEEEEEeCCCeEEEEecC
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS------VSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
|.|++||+++ ++++.++.+|...+ ++++ |+|++++|++|+.||+|+||+++
T Consensus 330 g~i~vwd~~~-~~~~~~l~~H~~~V---------------~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 330 RGVLFWDKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCC-CcEEEEEeCCCCCE---------------EEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999986 89999999998865 4554 57899999999999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-32 Score=252.09 Aligned_cols=270 Identities=12% Similarity=0.096 Sum_probs=198.2
Q ss_pred cceEEEEEccCCCEEEEEecCC-cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (501)
..+++++|+|+|+.||.++.+. .|+.|+....+ ......+.+|.
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-------------------------~~~~~~~~gh~---------- 62 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-------------------------VPPVVQFTGHG---------- 62 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS-------------------------SCSEEEECTTT----------
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC-------------------------ccceEEEeCCC----------
Confidence 4578999999999999986543 23445433222 22445677775
Q ss_pred cccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceec
Q 010801 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (501)
Q Consensus 112 ~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (501)
...|++++|+|..++.+|++|+.||+|++||+..++......
T Consensus 63 -~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~------------------------------------- 104 (325)
T d1pgua1 63 -SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE------------------------------------- 104 (325)
T ss_dssp -TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE-------------------------------------
T ss_pred -CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeee-------------------------------------
Confidence 167999999976688999999999999999998765322210
Q ss_pred cCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 192 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
......+ ..|...|.+++|+++++.++++ .++.+.+|+.++ ++.+.. +.+|..
T Consensus 105 ---------------~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~h~~ 160 (325)
T d1pgua1 105 ---------------VNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGE-------VSGHSQ 160 (325)
T ss_dssp ---------------EEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEEE-------CCSCSS
T ss_pred ---------------ccccccc-ccccCcEEEEEECCCCCccceeeccccceEEEEeecc-ccccee-------eeeccc
Confidence 0111112 5788899999999999998874 478899999984 444443 678999
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeC-CCEEEEEc-
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD- 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~~~~- 346 (501)
.|.+++|+|+++.++++++.|+.|++||....+.. ..... ..+|...|.+++|+|+ +++|++++
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~----~~~~~----------~~~~~~~v~~v~~~pd~~~~l~s~~~ 226 (325)
T d1pgua1 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS----ASDRT----------HHKQGSFVRDVEFSPDSGEFVITVGS 226 (325)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE----EEECS----------SSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred ccccccccccccceEEEeecccccccccccccccc----eeccc----------ccCCCCccEEeeeccccceecccccc
Confidence 99999999998456888999999999998876432 11111 2346778999999997 67888775
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
|+.|++||+++ ++.+..+.+|...+... +.+++| |++++|++++.|+.|+|||+.+++. ...+..|
T Consensus 227 d~~i~iwd~~~-~~~~~~l~~~~~~v~~~-----------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~ 292 (325)
T d1pgua1 227 DRKISCFDGKS-GEFLKYIEDDQEPVQGG-----------IFALSW-LDSQKFATVGADATIRVWDVTTSKC-VQKWTLD 292 (325)
T ss_dssp TCCEEEEETTT-CCEEEECCBTTBCCCSC-----------EEEEEE-SSSSEEEEEETTSEEEEEETTTTEE-EEEEECC
T ss_pred ccceeeeeecc-ccccccccccccccccc-----------eeeeec-cCCCEEEEEeCCCeEEEEECCCCCE-EEEEEec
Confidence 69999999986 88888998887765211 023344 6889999999999999999998743 3444444
Q ss_pred c
Q 010801 427 K 427 (501)
Q Consensus 427 ~ 427 (501)
.
T Consensus 293 ~ 293 (325)
T d1pgua1 293 K 293 (325)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-32 Score=256.44 Aligned_cols=241 Identities=10% Similarity=0.103 Sum_probs=185.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
++|++++|+ |++++|++|+.|+.|++||..+++....
T Consensus 8 ~pIt~~~~s--~dg~~la~~~~~~~i~iw~~~~~~~~~~----------------------------------------- 44 (371)
T d1k8kc_ 8 EPISCHAWN--KDRTQIAICPNNHEVHIYEKSGNKWVQV----------------------------------------- 44 (371)
T ss_dssp SCCCEEEEC--TTSSEEEEECSSSEEEEEEEETTEEEEE-----------------------------------------
T ss_pred CCeEEEEEC--CCCCEEEEEeCCCEEEEEECCCCCEEEE-----------------------------------------
Confidence 779999998 8999999999999999999987653322
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
..+ .+|...|.+++|+|++++|++| .|++|++||+... ...... .+.+|...|.+
T Consensus 45 -----------------~~l-~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~-~~~~~~-----~~~~~~~~v~~ 100 (371)
T d1k8kc_ 45 -----------------HEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTL-----VILRINRAARC 100 (371)
T ss_dssp -----------------EEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-EEEEEE-----ECCCCSSCEEE
T ss_pred -----------------EEe-cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc-cccccc-----ccccccccccc
Confidence 222 6899999999999999999999 9999999999843 322221 25678899999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~ 351 (501)
++|+|++ +.|++++.|+.|++|++....... .... ...+|...|.+++|+|++++|++|+ |+.|+
T Consensus 101 i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~----~~~~---------~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 101 VRWAPNE-KKFAVGSGSRVISICYFEQENDWW----VCKH---------IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EEECTTS-SEEEEEETTSSEEEEEEETTTTEE----EEEE---------ECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccccccc-ccceeecccCcceeeeeecccccc----cccc---------cccccccccccccccccccceeccccCcEEE
Confidence 9999999 999999999999999987754321 1111 1234678899999999999999885 69999
Q ss_pred EEEeeCCCC------------------ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 352 LWDIRMDST------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 352 lwd~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
+||... .. .+.....|... +.+++|+|++++|++++.|+.|++||+
T Consensus 167 v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~s~~~d~~i~iwd~ 230 (371)
T d1k8kc_ 167 IFSAYI-KEVEERPAPTPWGSKMPFGELMFESSSSCGW---------------VHGVCFSANGSRVAWVSHDSTVCLADA 230 (371)
T ss_dssp EEECCC-TTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---------------EEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEeecc-CccccccccccccccccceeeeeeccCccCc---------------EEEEEeecccccccccccCCcceEEee
Confidence 999864 22 11222222222 378999999999999999999999999
Q ss_pred CCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eec
Q 010801 414 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 460 (501)
Q Consensus 414 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw 460 (501)
.++.. ...+..|..++.+++|++ ++++ +++|. |+. .+|
T Consensus 231 ~~~~~-~~~~~~~~~~v~s~~fs~--d~~~-----la~g~-d~~~~~~ 269 (371)
T d1k8kc_ 231 DKKMA-VATLASETLPLLAVTFIT--ESSL-----VAAGH-DCFPVLF 269 (371)
T ss_dssp GGTTE-EEEEECSSCCEEEEEEEE--TTEE-----EEEET-TSSCEEE
T ss_pred ecccc-eeeeecccccceeeeecC--CCCE-----EEEEc-CCceEEE
Confidence 88744 477778888888888877 5555 56554 444 555
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-31 Score=247.11 Aligned_cols=307 Identities=13% Similarity=0.141 Sum_probs=222.7
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|.+.|.+ +++++|++||||+.||+|+|||+.+++ ++.++.+|.
T Consensus 13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~~~~h~------- 57 (342)
T d2ovrb2 13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT------- 57 (342)
T ss_dssp ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS-------
T ss_pred CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEEeCCC-------
Confidence 469999865 467789999999999999999998765 447889999
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+.|.+++|+ + .+|++++.|+.+++|+..........
T Consensus 58 -----~~V~~v~~~--~--~~l~s~s~D~~~~~~~~~~~~~~~~~----------------------------------- 93 (342)
T d2ovrb2 58 -----GGVWSSQMR--D--NIIISGSTDRTLKVWNAETGECIHTL----------------------------------- 93 (342)
T ss_dssp -----SCEEEEEEE--T--TEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CCEEEEEeC--C--Cccccceecccccccccccccceecc-----------------------------------
Confidence 899999997 4 39999999999999998876543322
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..+...+..... ....+..+ .|+.+.+|+.......... ..+.
T Consensus 94 --------------------------~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~--------~~~~ 137 (342)
T d2ovrb2 94 --------------------------YGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL--------MGHV 137 (342)
T ss_dssp --------------------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEE--------ECCS
T ss_pred --------------------------cccceeEeeeec--ccccccccccceeEEEeecccccceeee--------eccc
Confidence 233334444333 33466667 9999999999854433321 1122
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
.. .....+.. ..++.++.|+.|++||.+..... ..+.. |. .....+++++.+|++++
T Consensus 138 ~~--~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~----~~~~~-------------~~--~~~~~~~~~~~~l~s~~~ 195 (342)
T d2ovrb2 138 AA--VRCVQYDG-RRVVSGAYDFMVKVWDPETETCL----HTLQG-------------HT--NRVYSLQFDGIHVVSGSL 195 (342)
T ss_dssp SC--EEEEEECS-SCEEEEETTSCEEEEEGGGTEEE----EEECC-------------CS--SCEEEEEECSSEEEEEET
T ss_pred cc--ceeecccc-ceeeeecCCCeEEEeecccceee----EEEcC-------------cc--cccccccCCCCEEEEEeC
Confidence 22 22344555 78999999999999999876533 23332 33 34455667889999885
Q ss_pred CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecc
Q 010801 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (501)
|+.|++||++. .+++..+.+|...+ .++++ ++++|++|+.||.|++||+...+.. ..+..+
T Consensus 196 dg~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~ 256 (342)
T d2ovrb2 196 DTSIRVWDVET-GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTGQCL-QTLQGP 256 (342)
T ss_dssp TSCEEEEETTT-CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCEE-EEECST
T ss_pred CCeEEEeeccc-ceeeeEecccccce---------------eEEec--CCCEEEEEcCCCEEEEEeccccccc-cccccc
Confidence 69999999986 88888888887654 45555 4569999999999999999887443 555554
Q ss_pred c---CcccceeeccCCccccCccceeeeecccce-eecccc--CCcccc-----cccCCCeEEEEEccCCCEEEEeeCCe
Q 010801 427 K---NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS 495 (501)
Q Consensus 427 ~---~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~--~~~~~~-----~~~~~~i~~~~~sp~~~~la~~~~~~ 495 (501)
. ..+.++.+. +.+ +++|+.|+. ++|+.. +.+... .+|...|++++|+|++.+||+|+.||
T Consensus 257 ~~~~~~~~~~~~~----~~~-----~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG 327 (342)
T d2ovrb2 257 NKHQSAVTCLQFN----KNF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327 (342)
T ss_dssp TSCSSCEEEEEEC----SSE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred ceeeeceeecccC----CCe-----eEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3 344444443 345 899999999 999543 333222 35677899999999999999999776
Q ss_pred -----EEEEe
Q 010801 496 -----LFFHY 500 (501)
Q Consensus 496 -----~~i~~ 500 (501)
+++|+
T Consensus 328 t~~~~l~~~D 337 (342)
T d2ovrb2 328 TEETKLLVLD 337 (342)
T ss_dssp SSCCEEEEEE
T ss_pred CCeeEEEEEe
Confidence 77775
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-31 Score=249.51 Aligned_cols=304 Identities=9% Similarity=0.089 Sum_probs=195.4
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
.|.+.|.++++++ ++|+||+.|++|+|||..+.+.. . ..........|.
T Consensus 12 ~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~--------------------~-~~~~~~~~~~~~-------- 60 (393)
T d1sq9a_ 12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE--------------------N-PKDKSYSHFVHK-------- 60 (393)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC--------------------C-GGGGEEEEECCT--------
T ss_pred cccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCC--------------------c-ccceeEeeeecc--------
Confidence 6999999999864 69999999999999998765431 0 001111122233
Q ss_pred cccccceeEEEEe---e--cCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 110 LEIEEKINRVRWC---A--APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 110 ~~~~~~V~~v~~~---~--~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..+..+... + ..+..++++++.||.|++|++...........
T Consensus 61 ----~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~----------------------------- 107 (393)
T d1sq9a_ 61 ----SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF----------------------------- 107 (393)
T ss_dssp ----TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEE-----------------------------
T ss_pred ----CCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeec-----------------------------
Confidence 222222211 1 12235677889999999999875432111100
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCC-----CCEEEEE-cCCeEEEEECCCCCeeee----
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFN---- 254 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~~---- 254 (501)
.... ... ...+...+..++|.++ +.+++++ .|+.+++|++........
T Consensus 108 --------------~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 108 --------------EKLD------LLD--SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp --------------EEEC------CSC--TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred --------------cccc------eee--eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 0000 000 0234556777777664 4567777 999999999863221100
Q ss_pred ------eeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 255 ------IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 255 ------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
...........+...+.+++|+|++ +|++|+.||+|++||+.+++.. ..+.. ...+.+|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~-------~~~l~~h~~ 232 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES-------QHSMINNSN 232 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC-------CC---CCCC
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----ccccc-------ccccccccc
Confidence 0000111234566778999999986 7899999999999999987643 22222 123456889
Q ss_pred ceeEEEEeeCCCEEEEEc-CC---cEEEEEeeCCCCceeEeecccccccccccc-CCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 329 SISDIKFANDGQHLLSRD-YM---NLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~-~~---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
+|.+++|+|||++|++|+ |+ .|++||+++ ++.+..+............+ .+... |++++|+||+++|++|+
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~---V~~l~fspd~~~l~S~s 308 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSW---VMSLSFNDSGETLCSAG 308 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSC---EEEEEECSSSSEEEEEE
T ss_pred eEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCc---eeeeccCCCCCeeEEEC
Confidence 999999999999999985 34 599999986 77777665322211111111 11112 28999999999999999
Q ss_pred CCCeEEEEecCCCCcceEEEecccCcccc----eeecc
Q 010801 404 YSNLLRIFSHGVGSAGGITVEAGKNENRK----PILQA 437 (501)
Q Consensus 404 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~----~~~~~ 437 (501)
.|++|+|||++++ ....++++|.+.|.. +++.+
T Consensus 309 ~D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 309 WDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDE 345 (393)
T ss_dssp TTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCT
T ss_pred CCCEEEEEECCCC-CEEEEECCcCCcccCCccEEEECC
Confidence 9999999999998 455889999998864 55555
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.6e-31 Score=241.88 Aligned_cols=253 Identities=16% Similarity=0.213 Sum_probs=189.5
Q ss_pred ccceEEEEEcc--CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 32 ~~~v~~v~~s~--~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
...|++++|+| +|++||+|+.||+|+|||+..++.. ..........+..|.
T Consensus 63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~-------------------~~~~~~~~~~~~~~~-------- 115 (325)
T d1pgua1 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------------------NSVEVNVKSEFQVLA-------- 115 (325)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------------------TEEEEEEEEEEECCS--------
T ss_pred CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce-------------------eeeeccccccccccc--------
Confidence 56899999998 6789999999999999999866431 000122233456677
Q ss_pred cccccceeEEEEeecCCCCEEEEee--CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s--~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
++|.+++|+ ++++++++++ .++.+++|+.++++.....
T Consensus 116 ----~~v~~v~~s--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 155 (325)
T d1pgua1 116 ----GPISDISWD--FEGRRLCVVGEGRDNFGVFISWDSGNSLGEV---------------------------------- 155 (325)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEECCSSCSEEEEETTTCCEEEEC----------------------------------
T ss_pred ----CcEEEEEEC--CCCCccceeeccccceEEEEeecccccceee----------------------------------
Confidence 889999998 7889988876 4678999998877644332
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCE-EEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.+|...|.+++|+|+++. ++++ .|+.+++||....+..... .....
T Consensus 156 ---------------------------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~-----~~~~~ 203 (325)
T d1pgua1 156 ---------------------------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-----RTHHK 203 (325)
T ss_dssp ---------------------------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-----CSSSC
T ss_pred ---------------------------eecccccccccccccccceEEEeecccccccccccccccceec-----ccccC
Confidence 688999999999999875 5567 9999999998843322221 13567
Q ss_pred cccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEe---eCCCEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA---NDGQHL 342 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s---p~~~~l 342 (501)
|...|.+++|+|++..+|++++.||.|++||+++++.. +.+.. |...+..+.|+ |+|++|
T Consensus 204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~-------------~~~~v~~~~~s~~~~dg~~l 266 (325)
T d1pgua1 204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL----KYIED-------------DQEPVQGGIFALSWLDSQKF 266 (325)
T ss_dssp TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE----EECCB-------------TTBCCCSCEEEEEESSSSEE
T ss_pred CCCccEEeeeccccceeccccccccceeeeeecccccc----ccccc-------------cccccccceeeeeccCCCEE
Confidence 88899999999985589999999999999999887643 33333 44455555554 688999
Q ss_pred EEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEec
Q 010801 343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (501)
Q Consensus 343 ~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 413 (501)
++++ |+.|+|||+++ ++++..+..+........ .++.+.++ .+|++++.||.|++||+
T Consensus 267 ~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 267 ATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQ-----------VGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCE-----------EEEEEEET-TEEEEEETTSCEEEEET
T ss_pred EEEeCCCeEEEEECCC-CCEEEEEEecCCcccCeE-----------EEEEECCC-CEEEEEECCCEEEEEEC
Confidence 9875 69999999986 888888887765432210 23444444 47899999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.1e-29 Score=234.81 Aligned_cols=304 Identities=8% Similarity=-0.024 Sum_probs=199.0
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
..|.+.|++|+|+|++++||+|+.||+|+|||+.++.. .. ......+|.
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-----------------------~~-~~~~~~~h~------- 56 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----------------------NV-DLLQSLRYK------- 56 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----------------------EE-EEEEEEECS-------
T ss_pred CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-----------------------ce-EEEEecCCC-------
Confidence 36899999999999999999999999999999987643 11 223334688
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
++|.+++|++ .++.+|++|+.|+.|++|++..+.......
T Consensus 57 -----~~V~~v~f~~-~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~---------------------------------- 96 (342)
T d1yfqa_ 57 -----HPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQALT---------------------------------- 96 (342)
T ss_dssp -----SCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEECB----------------------------------
T ss_pred -----CCEEEEEEeC-CCCCEEEEcccccceeeeeccccccccccc----------------------------------
Confidence 8899999984 346689999999999999998765433221
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
..+........+.++...++++ .++.+++||++............ ......
T Consensus 97 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~--~~~~~~ 148 (342)
T d1yfqa_ 97 --------------------------NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK 148 (342)
T ss_dssp --------------------------SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS
T ss_pred --------------------------ccccccccccccccccccccccccccccceeeccccccceeeeccc--cccccc
Confidence 2223333445556677788888 99999999987433222211100 111222
Q ss_pred cceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee-CCCEEEEEc
Q 010801 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD 346 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~~~~ 346 (501)
.......+.+.+ ..+++++.|+.|++||++.......... . ..+...+....+.+ ++..+++++
T Consensus 149 ~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~s 213 (342)
T d1yfqa_ 149 VKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIE---E-----------SGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEE---E-----------CSCSSCEEEEEECSGGGCEEEEEE
T ss_pred ceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeee---e-----------cccccceeeeEeecCCCCEEEeec
Confidence 344566777887 8999999999999999987654321111 1 11123455555544 567777775
Q ss_pred -CCcEEEEEeeCCCCc-----eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce
Q 010801 347 -YMNLKLWDIRMDSTP-----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 420 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (501)
+|.+.+|+....... ...+..+... .........+++++|+|++++|++|+.||.|+|||+++++.+
T Consensus 214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l- 286 (342)
T d1yfqa_ 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI- 286 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCC------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE-
T ss_pred CCCeEEEEEecCCcceeeccccceeeeeeec------cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE-
Confidence 699999998642111 1111111110 011122334479999999999999999999999999988543
Q ss_pred EEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 421 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 421 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
..+..+ .....+++++ ++.+ |++++.++. ++|.
T Consensus 287 ~~~~~~-~~~~~~~~s~--~~~~-----l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 287 KNFAKF-NEDSVVKIAC--SDNI-----LCLATSDDTFKTNA 320 (342)
T ss_dssp EECCCC-SSSEEEEEEE--CSSE-----EEEEEECTHHHHCS
T ss_pred EEecCC-CCCEEEEEEe--CCCE-----EEEEEcCCcEEEee
Confidence 444322 2334456666 4555 677766666 6664
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.1e-29 Score=231.30 Aligned_cols=295 Identities=12% Similarity=0.115 Sum_probs=216.0
Q ss_pred EeeeccCCcchhhccccccccce-eEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 94 KTEFQSHEPEFDYLKSLEIEEKI-NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~V-~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
..+|+||. ..| +|++| ++++|++|+.||+|++||+.++++....
T Consensus 5 ~~tL~GH~------------~~vitc~~~----~~~~l~tgs~Dg~i~vWd~~~~~~~~~l------------------- 49 (355)
T d1nexb2 5 RTTLRGHM------------TSVITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQL------------------- 49 (355)
T ss_dssp EEEEECCS------------SSCEEEEEE----ETTEEEEEETTTEEEEEETTTTEEEEEE-------------------
T ss_pred cEEECCcC------------CCcEEEEEE----CCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------
Confidence 36789998 654 66665 4679999999999999999987755432
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCe
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (501)
.+|...|++++|+|++ +|++| .|+.|++|+......
T Consensus 50 ------------------------------------------~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~ 86 (355)
T d1nexb2 50 ------------------------------------------SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC 86 (355)
T ss_dssp ------------------------------------------ECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEE
T ss_pred ------------------------------------------ECCCCCEEEEEEcCCC-EEEEEeccccccccccccccc
Confidence 6899999999999865 78888 999999999994433
Q ss_pred eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccc----eeecc--cccCCCcceeee
Q 010801 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR----ILRDA--AESHGSKSFFTE 325 (501)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~ 325 (501)
.... ....+........+.+++ ..+++++.|+.|++||+++......... ..... ............
T Consensus 87 ~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 87 THVF------EGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp EEEE------CCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred cccc------cccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 3222 123344455667788888 9999999999999999987643211000 00000 000000111122
Q ss_pred cccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 326 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 326 h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
|...+ ..+.+++++++++. ++.|++||+++ ++.+....++.... .++.|+|++.++++++.
T Consensus 160 ~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 221 (355)
T d1nexb2 160 HMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRI---------------YSTIYDHERKRCISASM 221 (355)
T ss_dssp CSSCE--EEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEETTTTEEEEEET
T ss_pred ccccc--cccccccceeeeecccceeeeeeccc-ccceeeeecccccc---------------ccccccccceeeecccc
Confidence 33333 34567788888875 69999999986 77777777666544 68999999999999999
Q ss_pred CCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEE-EEc
Q 010801 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHL-AWH 482 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~-~~s 482 (501)
|+.|++||+.++. ....+++|...+.++.+++ ++ |++|+.|+. ++|+..........|...+..+ .++
T Consensus 222 d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~~~----~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 291 (355)
T d1nexb2 222 DTTIRIWDLENGE-LMYTLQGHTALVGLLRLSD----KF-----LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY 291 (355)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSCCCEEEECS----SE-----EEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEE
T ss_pred cceEEeeeccccc-ccccccccccccccccccc----ce-----eeeeecccccccccccccceecccccCCceEEEEEc
Confidence 9999999999884 4588999999999998864 34 899999999 9997776655555666666665 568
Q ss_pred cCCCEEEEeeCCeEEEEeC
Q 010801 483 PTTNLIACANGNSLFFHYA 501 (501)
Q Consensus 483 p~~~~la~~~~~~~~i~~~ 501 (501)
+++++|++++++.++||+.
T Consensus 292 ~~~~~l~~g~d~~i~vwd~ 310 (355)
T d1nexb2 292 VSDNILVSGSENQFNIYNL 310 (355)
T ss_dssp ECSSEEEEEETTEEEEEET
T ss_pred CCCCEEEEEeCCEEEEEEC
Confidence 8899999999999999973
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.3e-29 Score=223.84 Aligned_cols=270 Identities=12% Similarity=0.208 Sum_probs=204.7
Q ss_pred ccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+|...|+|++| ||++||+|+.||+|+|||+.+++ +...+++|.
T Consensus 13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~-------- 55 (293)
T d1p22a2 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT-------- 55 (293)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCC--------
Confidence 57788999765 79999999999999999998765 447889999
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.|++|+| ++++|++|+.|+.|++|++..+......
T Consensus 56 ----~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~~~~~~------------------------------------ 91 (293)
T d1p22a2 56 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTL------------------------------------ 91 (293)
T ss_dssp ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEE------------------------------------
T ss_pred ----CCEeeeec----ccceeecccccccccccccccccccccc------------------------------------
Confidence 88999987 4679999999999999999887654432
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
..+... ...+.+....++++ .++.+.+|+........... .+..|..
T Consensus 92 -------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 139 (293)
T d1p22a2 92 -------------------------IHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR-----VLVGHRA 139 (293)
T ss_dssp -------------------------CCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE-----EECCCSS
T ss_pred -------------------------cccccc--cccccccccceeecccccceeEeeccccccccccc-----ccccccc
Confidence 111111 22344455677777 99999999988544322221 2466788
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~ 347 (501)
.+..+.+.+ ..+++++.|+.|++||+++++.. ..+.. |...+..+.++ +.+++++. |
T Consensus 140 ~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~----~~~~~-------------~~~~v~~~~~~--~~~l~~~~~d 197 (293)
T d1p22a2 140 AVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSD 197 (293)
T ss_dssp CEEEEEEET---TEEEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEEE--TTEEEEEETT
T ss_pred ccccceecc---cccccccCCCceeeecCCCCcEE----EEEcc-------------cccccccccCC--CCeEEEecCC
Confidence 888877765 45888999999999999987543 33333 44566666554 66788774 6
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC--------Ccc
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--------SAG 419 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------~~~ 419 (501)
+.|++||+++ .+.+..+.++...+ ..+++++.+|++|+.||.|++||+... ...
T Consensus 198 g~i~i~d~~~-~~~~~~~~~~~~~v-----------------~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 259 (293)
T d1p22a2 198 NTIRLWDIEC-GACLRVLEGHEELV-----------------RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259 (293)
T ss_dssp SCEEEEETTT-CCEEEEECCCSSCE-----------------EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred CEEEEEeccc-ceeeeeecccceee-----------------eeccccceEEEEEcCCCEEEEEECCCCccccccCCcee
Confidence 9999999986 77788887776643 457788999999999999999997532 234
Q ss_pred eEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 420 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 420 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
...+.+|.+.|.++++. +.+ |++++.|+. ++|+
T Consensus 260 ~~~~~~H~~~V~~v~~d----~~~-----l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 260 LRTLVEHSGRVFRLQFD----EFQ-----IVSSSHDDTILIWD 293 (293)
T ss_dssp EEEECCCSSCCCCEEEC----SSC-----EEECCSSSEEEEEC
T ss_pred eEEecCCCCCEEEEEEc----CCE-----EEEEecCCEEEEeC
Confidence 57889999999999884 345 899999999 9984
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=9.4e-29 Score=225.00 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=186.9
Q ss_pred CCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 215 ~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
.+|...|++++|+|++++|++| .|++|++||+++ ++..+.+ ...|...|++++|+|++ + +++++.|+.++
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~-~~~~~~~------~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v~ 79 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVF------PDVHATMITGIKTTSKG-D-LFTVSWDDHLK 79 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECS------SCSCSSCEEEEEECTTS-C-EEEEETTTEEE
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEE------cCCCCCcEEEEEeeccc-e-eecccceeeEE
Confidence 8999999999999999999999 999999999984 4444431 35789999999999998 6 45667899999
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
+|+......... ... ...+...+..++|+|++++++++.++.+++|+.. +.......+..
T Consensus 80 ~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~---~~~~~~~~~~~--- 139 (299)
T d1nr0a2 80 VVPAGGSGVDSS-KAV-------------ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPISYNS--- 139 (299)
T ss_dssp EECSSSSSSCTT-SCC-------------EEECSSCEEEEEECTTSSCEEEEESSEEEEEETT---EEEEEECSSCE---
T ss_pred EeccCCcccccc-ccc-------------cccccccccccccccccccccccccccccccccc---ccccccccccc---
Confidence 999876432211 011 1234567899999999999998888999999853 33333222221
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeec
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL 453 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 453 (501)
.+++|+|++++|++|+.||.|++||+.+++........|...|.+++++| ++.+ |++++
T Consensus 140 --------------~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~-----l~~~~ 198 (299)
T d1nr0a2 140 --------------SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN--NGAF-----LVATD 198 (299)
T ss_dssp --------------EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT--TSSE-----EEEEE
T ss_pred --------------cccccccccccccccccccccccccccccccccccccccccccccccccc--cccc-----ccccc
Confidence 68999999999999999999999999887555556678999999999998 6677 89999
Q ss_pred ccce-eeccccC-----CcccccccCCCeEEEEEccCCCEEEEeeCC-eEEEEe
Q 010801 454 YRQA-HENSSSG-----HHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 500 (501)
Q Consensus 454 ~~~~-~iw~~~~-----~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i~~ 500 (501)
.++. .+|+... .......|...|++++|+|++++||+++.| .+++|+
T Consensus 199 ~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 199 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEE
Confidence 9999 9995432 223345688999999999999999999854 599997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.1e-29 Score=229.84 Aligned_cols=262 Identities=15% Similarity=0.105 Sum_probs=199.9
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
.+|..+|++++|+| |++|+.||+|++||+.++ .++|.
T Consensus 10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------------------------------~~~h~------- 46 (287)
T d1pgua2 10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------------------------------HQDHS------- 46 (287)
T ss_dssp CCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------------------------------ECCCC-------
T ss_pred CCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------------------------------CCCCC-------
Confidence 36999999999997 999999999999997643 46788
Q ss_pred ccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
..|.+++++ ++..+++++.|+++++|++...+
T Consensus 47 -----~~V~~~~~~---~~~~~~s~s~D~~v~~w~~~~~~---------------------------------------- 78 (287)
T d1pgua2 47 -----NLIVSLDNS---KAQEYSSISWDDTLKVNGITKHE---------------------------------------- 78 (287)
T ss_dssp -----SCEEEEECC---STTCCEEEETTTEEEETTEEEEE----------------------------------------
T ss_pred -----CCEEEEEec---CCCeEEEEeeccccccccccccc----------------------------------------
Confidence 889999996 35678999999999999976532
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCccc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (501)
....+..+++++++..++++.++.+.+|+.. .+.....+ . +..
T Consensus 79 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~-~~~ 121 (287)
T d1pgua2 79 ----------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSF-TGDIIKSV-------R-LNS 121 (287)
T ss_dssp ----------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETT-TCCEEEEE-------E-CSS
T ss_pred ----------------------------cccceeeeeeccCCceEEEeecccceeeecc-ceeeeeec-------c-ccc
Confidence 1234567788888888887777788999988 44444432 1 122
Q ss_pred ceEEEEEecCCCcEEEEEeCC-CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-
Q 010801 269 VITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~- 346 (501)
. ..++++++ ..+++++.+ +.+++|++...+... .+. ..|...+.+++|+|++++|++|+
T Consensus 122 ~--~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~----~~~------------~~~~~~v~~~~~s~~~~~l~~g~~ 182 (287)
T d1pgua2 122 P--GSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSF----DLK------------TPLRAKPSYISISPSETYIAAGDV 182 (287)
T ss_dssp C--EEEEEECS-SEEEEEETTTSCEEEEETTEEEEEE----ECS------------SCCSSCEEEEEECTTSSEEEEEET
T ss_pred e--eeeeeccC-cceeeeccccceeeeeeccccceee----eee------------eccCCceeEEEeccCccccccccc
Confidence 2 34567777 777777776 479999987653221 111 12456899999999999999986
Q ss_pred CCcEEEEEeeCCCCce-eEeeccccccccccccCCCCCcceeeEEEEcCC----------CcEEEEEeCCCeEEEEecCC
Q 010801 347 YMNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----------GLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 347 ~~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~~~l~s~~~dg~i~iwd~~~ 415 (501)
++.|++||+.. ++.. ..+.+|...+ .+++|+|+ +.+|++|+.|++|+|||+++
T Consensus 183 dg~i~i~d~~~-~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 183 MGKILLYDLQS-REVKTSRWAFRTSKI---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp TSCEEEEETTT-TEEEECCSCCCSSCE---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred cccccceeecc-ccccccccccccccc---------------ceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence 59999999975 4433 3456666654 67888764 56899999999999999988
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eecc
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 461 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~ 461 (501)
+......+.+|...|.++++++ +++ |++++.|+. ++|+
T Consensus 247 ~~~~~~~~~~h~~~V~~v~~~~--~~~------l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 247 PMKIIKALNAHKDGVNNLLWET--PST------LVSSGADACIKRWN 285 (287)
T ss_dssp TTCCEEETTSSTTCEEEEEEEE--TTE------EEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEECC--CCE------EEEEECCCeEEEEE
Confidence 7677788889999999999987 333 688888999 9994
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.2e-29 Score=227.81 Aligned_cols=267 Identities=10% Similarity=0.039 Sum_probs=202.0
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
.+++++++||. ++|++|+|+ + |++|+.||+|++||+.++.
T Consensus 3 ~~~i~~l~gH~------------~~I~~l~~s--~----l~sgs~Dg~v~~Wd~~~~~---------------------- 42 (287)
T d1pgua2 3 DEVLKTISGHN------------KGITALTVN--P----LISGSYDGRIMEWSSSSMH---------------------- 42 (287)
T ss_dssp EEEEEEECCCS------------SCEEEEETT--T----TEEEETTSCEEETTTTEEE----------------------
T ss_pred cceeEEECCCC------------CceEEEEEC--c----EEEEeCCCeEEEEECCCCC----------------------
Confidence 45788999999 999999996 3 8999999999999987653
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
.+|...|.++++++++. ++++ .|+++++|++..
T Consensus 43 --------------------------------------------~~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~- 76 (287)
T d1pgua2 43 --------------------------------------------QDHSNLIVSLDNSKAQE-YSSISWDDTLKVNGITK- 76 (287)
T ss_dssp --------------------------------------------CCCCSCEEEEECCSTTC-CEEEETTTEEEETTEEE-
T ss_pred --------------------------------------------CCCCCCEEEEEecCCCe-EEEEeeccccccccccc-
Confidence 57889999999997765 5666 999999999772
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
.. ....+..+.+++++ ..+++ +.++.+.+|+..+++.. +.+.. .
T Consensus 77 ~~--------------~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~----~~~~~----------------~ 120 (287)
T d1pgua2 77 HE--------------FGSQPKVASANNDG-FTAVL-TNDDDLLILQSFTGDII----KSVRL----------------N 120 (287)
T ss_dssp EE--------------CSSCEEEEEECSSS-EEEEE-ETTSEEEEEETTTCCEE----EEEEC----------------S
T ss_pred cc--------------cccceeeeeeccCC-ceEEE-eecccceeeeccceeee----eeccc----------------c
Confidence 11 22346788888887 65555 55667889998877543 22222 1
Q ss_pred eeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEee-ccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC
Q 010801 330 ISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 406 (501)
....+++|++..++++. + +.+++|++.. .+....+. .+...+ ++++|+|++++|++|+.||
T Consensus 121 ~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~g~~dg 184 (287)
T d1pgua2 121 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRAKP---------------SYISISPSETYIAAGDVMG 184 (287)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSSCE---------------EEEEECTTSSEEEEEETTS
T ss_pred ceeeeeeccCcceeeeccccceeeeeeccc-cceeeeeeeccCCce---------------eEEEeccCccccccccccc
Confidence 23456778888887764 4 6899999864 33333332 233322 7899999999999999999
Q ss_pred eEEEEecCCCCcceEEEecccCcccceeeccCC--------ccccCccceeeeecccce-eecccc---CCcccccccCC
Q 010801 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAP--------RARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSS 474 (501)
Q Consensus 407 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~l~~~~~~~~-~iw~~~---~~~~~~~~~~~ 474 (501)
.|++||+.++......+.+|...+.+++++|.. ++.+ +++|+.|+. ++|+.. .......+|..
T Consensus 185 ~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~-----l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~ 259 (287)
T d1pgua2 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL-----VATGSLDTNIFIYSVKRPMKIIKALNAHKD 259 (287)
T ss_dssp CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE-----EEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred cccceeecccccccccccccccccceeeecccccccccccCCCCe-----eEeecCCCeEEEEECCCCCeEEEEeCCCCC
Confidence 999999998865555678999999999998742 3445 899999999 999543 34444568999
Q ss_pred CeEEEEEccCCCEEEEeeCCeEEEEe
Q 010801 475 KLLHLAWHPTTNLIACANGNSLFFHY 500 (501)
Q Consensus 475 ~i~~~~~sp~~~~la~~~~~~~~i~~ 500 (501)
.|++++|+|++.++.++.++.+++|+
T Consensus 260 ~V~~v~~~~~~~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 260 GVNNLLWETPSTLVSSGADACIKRWN 285 (287)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CeEEEEECCCCEEEEEECCCeEEEEE
Confidence 99999999998655555566799997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=1.6e-28 Score=229.39 Aligned_cols=307 Identities=12% Similarity=0.061 Sum_probs=218.7
Q ss_pred EEEEcc-CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 37 ~v~~s~-~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
.-.||| ||+++|+++ +|.|++||+.+++. ..+ +|. ..
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~----------------------------~~~-~~~------------~~ 44 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV----------------------------LKV-PEP------------LR 44 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBE----------------------------EEC-SCC------------SC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcE----------------------------EEc-cCC------------CC
Confidence 467999 999999986 57999999987653 222 577 88
Q ss_pred eeEEEEeecCCCCEEEEeeCC--CeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 116 INRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d--~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
|.+++|+ |||++|++++.+ ..|++||..+++...+
T Consensus 45 v~~~~~s--pDg~~l~~~~~~~g~~v~v~d~~~~~~~~~----------------------------------------- 81 (360)
T d1k32a3 45 IRYVRRG--GDTKVAFIHGTREGDFLGIYDYRTGKAEKF----------------------------------------- 81 (360)
T ss_dssp EEEEEEC--SSSEEEEEEEETTEEEEEEEETTTCCEEEC-----------------------------------------
T ss_pred EEEEEEC--CCCCEEEEEEcCCCCEEEEEECCCCcEEEe-----------------------------------------
Confidence 9999998 899999887755 3799999988775432
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
..|...|.+++|+|++++|+++ .++.+++|++. ..+.... +..|...+.+
T Consensus 82 ---------------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~ 132 (360)
T d1k32a3 82 ---------------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVI-------ERSREAMITD 132 (360)
T ss_dssp ---------------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEE-------EECSSSCCCC
T ss_pred ---------------------eCCCceEEeeeecccccccceecccccccccccc-ccceeee-------eecccccccc
Confidence 5788899999999999999999 99999999998 4444443 4567778899
Q ss_pred EEEecCCCcEEEEEe----------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 273 AEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 273 v~~~p~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
++|+|+| ++|+.+. .++.+++||+.+++.. ... .|...+..++|+|||++|
T Consensus 133 ~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~----~~~--------------~~~~~~~~~~~spdg~~l 193 (360)
T d1k32a3 133 FTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF----AAT--------------TENSHDYAPAFDADSKNL 193 (360)
T ss_dssp EEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE----ECS--------------CSSSBEEEEEECTTSCEE
T ss_pred hhhccce-eeeeeeccccccceeeccccceeeeccccCcee----eec--------------ccccccccccccCCCCEE
Confidence 9999999 8888654 3456899999886432 111 124568889999999999
Q ss_pred EEEc-CCcEEEEEeeCCCCc-------eeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCC-----eEE
Q 010801 343 LSRD-YMNLKLWDIRMDSTP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-----LLR 409 (501)
Q Consensus 343 ~~~~-~~~i~lwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-----~i~ 409 (501)
++++ ++.+++||... ... ...+..+.... ..+.|++++..++++..+. .+.
T Consensus 194 ~~~s~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~s~~~~~~~~~~~~~~~~~~~~~ 257 (360)
T d1k32a3 194 YYLSYRSLDPSPDRVV-LNFSFEVVSKPFVIPLIPGSP---------------NPTKLVPRSMTSEAGEYDLNDMYKRSS 257 (360)
T ss_dssp EEEESCCCCCEECSSS-SCEECCSCBEEEEEESSTTCC---------------CGGGCCCGGGSCCCCCCCCTTGGGGCE
T ss_pred EEEeCCCceEcccccc-cceeeccccceEEEecccCcc---------------ccceECCCcCcccccceeeccccccee
Confidence 9876 49999998753 221 11222222221 3467788887777665432 233
Q ss_pred EEecCCCCcceEEEecccCcccceeeccCC-ccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEccCCCE
Q 010801 410 IFSHGVGSAGGITVEAGKNENRKPILQAAP-RARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNL 487 (501)
Q Consensus 410 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~sp~~~~ 487 (501)
.+++..+ ....+..+.+.+..+.+.... ...+ +++++.++. .+|+..... ...+...|.+++|+|||++
T Consensus 258 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~d~~~~~--~~~~~~~v~~~~~SpDG~~ 328 (360)
T d1k32a3 258 PINVDPG--DYRMIIPLESSILIYSVPVHGEFAAY-----YQGAPEKGVLLKYDVKTRK--VTEVKNNLTDLRLSADRKT 328 (360)
T ss_dssp ECSCCCB--CEEEEEECSSEEEEEECCCCCSHHHH-----HHCCCCCEEEEEEETTTCC--EEEEEEEEEEEEECTTSCE
T ss_pred ecccCcC--ceeEeeecCCCceEEEEEecCCCeeE-----EEecCCCCEEEEEECCCCe--EEEecCCcCEEEECCCCCE
Confidence 3444433 334555566555555544421 2334 788888888 999655432 3355667999999999999
Q ss_pred EEEeeCCe-EEEEeC
Q 010801 488 IACANGNS-LFFHYA 501 (501)
Q Consensus 488 la~~~~~~-~~i~~~ 501 (501)
|++++.|+ +++|.+
T Consensus 329 l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 329 VMVRKDDGKIYTFPL 343 (360)
T ss_dssp EEEEETTSCEEEEES
T ss_pred EEEEECCCeEEEEEC
Confidence 99999555 999973
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.5e-26 Score=203.77 Aligned_cols=263 Identities=14% Similarity=0.213 Sum_probs=192.8
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..|+|++| ++++|++|+.||+|+|||+.++++...+
T Consensus 16 ~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~~~~~~l---------------------------------------- 51 (293)
T d1p22a2 16 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRIL---------------------------------------- 51 (293)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEE----------------------------------------
T ss_pred CCEEEEEE----cCCEEEEEeCCCeEEEEECCCCcEEEEE----------------------------------------
Confidence 78998765 6889999999999999999887755443
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEE
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (501)
.+|...|++++| ++++|++| .|+.|++|++......... ..+.. ..
T Consensus 52 ---------------------~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~--------~~~~~--~~ 98 (293)
T d1p22a2 52 ---------------------TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL--------IHHCE--AV 98 (293)
T ss_dssp ---------------------CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE--------CCCCS--CE
T ss_pred ---------------------ecCCCCEeeeec--ccceeecccccccccccccccccccccc--------ccccc--cc
Confidence 689999999987 56799998 9999999999954443321 11222 23
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cCCcEE
Q 010801 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK 351 (501)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~~~i~ 351 (501)
..+.+.. ..++++..++.+.+||........ ... .+..|...+..+.+. ...++++ .|+.|+
T Consensus 99 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~ 161 (293)
T d1p22a2 99 LHLRFNN-GMMVTCSKDRSIAVWDMASPTDIT----LRR----------VLVGHRAAVNVVDFD--DKYIVSASGDRTIK 161 (293)
T ss_dssp EEEECCT-TEEEEEETTSCEEEEECSSSSCCE----EEE----------EECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred ccccccc-cceeecccccceeEeecccccccc----ccc----------cccccccccccceec--ccccccccCCCcee
Confidence 3445555 789999999999999998764321 111 122355677766665 4455555 569999
Q ss_pred EEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccc
Q 010801 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (501)
Q Consensus 352 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 431 (501)
+||+++ .+.+..+.++...+ ..+.+ ++.++++++.||.|++||+.+... .....++...+.
T Consensus 162 ~~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~ 222 (293)
T d1p22a2 162 VWNTST-CEFVRTLNGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVR 222 (293)
T ss_dssp EEETTT-CCEEEEEECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEE
T ss_pred eecCCC-CcEEEEEccccccc---------------ccccC--CCCeEEEecCCCEEEEEeccccee-eeeecccceeee
Confidence 999986 88888888776653 34444 567899999999999999998744 477778877765
Q ss_pred ceeeccCCccccCccceeeeecccce-eecccc-----------CCcccccccCCCeEEEEEccCCCEEEEeeCC-eEEE
Q 010801 432 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-----------GHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF 498 (501)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~-----------~~~~~~~~~~~~i~~~~~sp~~~~la~~~~~-~~~i 498 (501)
.... ++.+ |++|+.|+. ++|+.. .......+|...|++++|+ +++|++++.| .++|
T Consensus 223 ~~~~----~~~~-----l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~i 291 (293)
T d1p22a2 223 CIRF----DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291 (293)
T ss_dssp EEEC----CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEE
T ss_pred eccc----cceE-----EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEE
Confidence 5433 4455 899999999 999432 1223346789999999995 5789998865 5999
Q ss_pred Ee
Q 010801 499 HY 500 (501)
Q Consensus 499 ~~ 500 (501)
|+
T Consensus 292 WD 293 (293)
T d1p22a2 292 WD 293 (293)
T ss_dssp EC
T ss_pred eC
Confidence 95
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.1e-25 Score=204.83 Aligned_cols=273 Identities=16% Similarity=0.223 Sum_probs=199.5
Q ss_pred eeeEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccc
Q 010801 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (501)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
++..+.++||+ +.|.+ +++ ++|++|++|+.||+|+|||+.++++....
T Consensus 6 ~~~~~~l~GH~------------~~V~s-~~~--~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~----------------- 53 (342)
T d2ovrb2 6 LKSPKVLKGHD------------DHVIT-CLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTL----------------- 53 (342)
T ss_dssp CCCCEEEECST------------TSCEE-EEE--EETTEEEEEETTSCEEEEETTTCCEEEEC-----------------
T ss_pred CCcCEEECCcC------------CceEE-EEE--ECCCEEEEEeCCCeEEEEECCCCCEEEEE-----------------
Confidence 44567899999 77754 344 35789999999999999999988755432
Q ss_pred cCccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCC
Q 010801 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (501)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~ 249 (501)
.+|...|.+++|+|+ +|++| .|+.+++|+....
T Consensus 54 --------------------------------------------~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~ 87 (342)
T d2ovrb2 54 --------------------------------------------VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETG 87 (342)
T ss_dssp --------------------------------------------CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTT
T ss_pred --------------------------------------------eCCCCCEEEEEeCCC--ccccceecccccccccccc
Confidence 689999999999875 88888 9999999999843
Q ss_pred CeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccc
Q 010801 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (501)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (501)
..... ...+...+......+ ..++.+..|+.+.+|+..+++.. ..+.. ..
T Consensus 88 ~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~----~~~~~---------------~~ 137 (342)
T d2ovrb2 88 ECIHT--------LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL----HVLMG---------------HV 137 (342)
T ss_dssp EEEEE--------ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE----EEEEC---------------CS
T ss_pred cceec--------ccccceeEeeeeccc---ccccccccceeEEEeecccccce----eeeec---------------cc
Confidence 33222 233444555554443 56888999999999999887543 22222 12
Q ss_pred eeEEEEeeCCCEEEEE-cCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeE
Q 010801 330 ISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 408 (501)
.......+....++++ .++.|++||... .+.+..+.+|... ...+++++.+|++|+.||.|
T Consensus 138 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~l~s~~~dg~i 199 (342)
T d2ovrb2 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNR-----------------VYSLQFDGIHVVSGSLDTSI 199 (342)
T ss_dssp SCEEEEEECSSCEEEEETTSCEEEEEGGG-TEEEEEECCCSSC-----------------EEEEEECSSEEEEEETTSCE
T ss_pred ccceeeccccceeeeecCCCeEEEeeccc-ceeeEEEcCcccc-----------------cccccCCCCEEEEEeCCCeE
Confidence 2233344555666665 569999999986 7788888877653 46667789999999999999
Q ss_pred EEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCC--cc---cccccCCCeEEEEEc
Q 010801 409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--HE---LSYNLSSKLLHLAWH 482 (501)
Q Consensus 409 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~--~~---~~~~~~~~i~~~~~s 482 (501)
++||+..++ ....+.+|...+.++.+.+ .+ |++|+.|+. ++|+.... .. ....|...+.+++++
T Consensus 200 ~~~d~~~~~-~~~~~~~~~~~v~~~~~~~----~~-----l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (342)
T d2ovrb2 200 RVWDVETGN-CIHTLTGHQSLTSGMELKD----NI-----LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 269 (342)
T ss_dssp EEEETTTCC-EEEEECCCCSCEEEEEEET----TE-----EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred EEeecccce-eeeEecccccceeEEecCC----CE-----EEEEcCCCEEEEEecccccccccccccceeeeceeecccC
Confidence 999999884 4588899999988877754 34 899999999 99954422 21 223456677766665
Q ss_pred cCCCEEEEeeCC-eEEEEeC
Q 010801 483 PTTNLIACANGN-SLFFHYA 501 (501)
Q Consensus 483 p~~~~la~~~~~-~~~i~~~ 501 (501)
++++++|+.| .+++|+.
T Consensus 270 --~~~~~s~s~Dg~i~iwd~ 287 (342)
T d2ovrb2 270 --KNFVITSSDDGTVKLWDL 287 (342)
T ss_dssp --SSEEEEEETTSEEEEEET
T ss_pred --CCeeEEEcCCCEEEEEEC
Confidence 5788988855 4999973
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.2e-26 Score=217.66 Aligned_cols=249 Identities=13% Similarity=0.155 Sum_probs=163.7
Q ss_pred CCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEe
Q 010801 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (501)
Q Consensus 43 ~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (501)
++.++++++.||.|++|++...... ........... ........+..++|.
T Consensus 78 ~~~~~~s~~~dg~v~~w~~~~~~~~----------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 128 (393)
T d1sq9a_ 78 ELCLVATTSFSGDLLFYRITREDET----------------------KKVIFEKLDLL-------DSDMKKHSFWALKWG 128 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTT----------------------CCEEEEEECCS-------CTTGGGSCEEEEEEE
T ss_pred CCcEEEEEeCCCcEEEEEccCCCce----------------------eeeecccccee-------eeccCCCceEEEEEe
Confidence 3457889999999999998865432 00000001100 001112567888887
Q ss_pred ecC---CCCEEEEeeCCCeEEEEeccccceeeee-ccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEE
Q 010801 123 AAP---NGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 198 (501)
Q Consensus 123 ~~~---~~~~l~s~s~d~~i~lw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 198 (501)
+.. .+.++++++.||++++|++......... .... .....+
T Consensus 129 ~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----------------------------------~~~~~~ 173 (393)
T d1sq9a_ 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW-----------------------------------SPTLEL 173 (393)
T ss_dssp CCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC-----------------------------------CCEEEE
T ss_pred cCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee-----------------------------------ccceec
Confidence 432 2578899999999999998643211100 0000 000000
Q ss_pred EeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec
Q 010801 199 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 277 (501)
Q Consensus 199 w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 277 (501)
...... ...+...+.+++|+|++ +|++| .|++|++||+.+. +.+..+.. ...+.+|..+|++++|+|
T Consensus 174 --------~~~~~~-~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~-~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 174 --------QGTVES-PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES-QHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp --------EEEECC-SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC-CC---CCCCCEEEEEECS
T ss_pred --------ccceec-ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc-cccccccc-ccccccccceEEEccccc
Confidence 001111 14566778999999998 88898 9999999999944 44433221 124678999999999999
Q ss_pred CCCcEEEEEeCCC---eEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEE
Q 010801 278 IYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 353 (501)
Q Consensus 278 ~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lw 353 (501)
++ ++|++|+.|+ .|++||+++++.. ..+............+.+|...|++++|+|++++|++++ |++|+||
T Consensus 242 dg-~~l~sgs~D~t~~~i~lwd~~~g~~~----~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW 316 (393)
T d1sq9a_ 242 QG-SLLAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316 (393)
T ss_dssp ST-TEEEEEEEETTEEEEEEEETTTCCEE----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cc-ceeeeecCCCCcceeeecccccceee----eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence 99 9999999987 4999999988654 333332222333445678999999999999999999986 6999999
Q ss_pred EeeCCCCceeEeeccccccc
Q 010801 354 DIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~ 373 (501)
|+++ ++++.++.+|...+.
T Consensus 317 d~~~-g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 317 DVKT-KERITTLNMHCDDIE 335 (393)
T ss_dssp ETTT-TEEEEEEECCGGGCS
T ss_pred ECCC-CCEEEEECCcCCccc
Confidence 9987 899999999987664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=3.4e-26 Score=213.42 Aligned_cols=270 Identities=12% Similarity=0.071 Sum_probs=187.3
Q ss_pred CCccccccceEEEEEccCCCEEEEEecCC--cEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcc
Q 010801 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (501)
Q Consensus 26 ~~~~~h~~~v~~v~~s~~g~~latg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (501)
...+.|...|++++|+|||++|++++.+. .|++||+.+++. ..+..|.
T Consensus 36 ~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~----------------------------~~~~~~~-- 85 (360)
T d1k32a3 36 VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA----------------------------EKFEENL-- 85 (360)
T ss_dssp EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE----------------------------EECCCCC--
T ss_pred EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE----------------------------EEeeCCC--
Confidence 34457899999999999999998877553 799999988754 4567787
Q ss_pred hhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCc
Q 010801 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (501)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (501)
..|.+++|+ |++++|++++.++.+++|++.+++.....
T Consensus 86 ----------~~v~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 123 (360)
T d1k32a3 86 ----------GNVFAMGVD--RNGKFAVVANDRFEIMTVDLETGKPTVIE------------------------------ 123 (360)
T ss_dssp ----------CSEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------
T ss_pred ----------ceEEeeeec--ccccccceeccccccccccccccceeeee------------------------------
Confidence 889999998 89999999999999999999887754432
Q ss_pred ccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-----------cCCeEEEEECCCCCee
Q 010801 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQC 252 (501)
Q Consensus 184 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-----------~d~~i~iwd~~~~~~~ 252 (501)
..|...+.+++|+|+|++|+.+ .++.+++|++. .++.
T Consensus 124 -------------------------------~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-~~~~ 171 (360)
T d1k32a3 124 -------------------------------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-GRKI 171 (360)
T ss_dssp -------------------------------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-TTEE
T ss_pred -------------------------------ecccccccchhhccceeeeeeeccccccceeeccccceeeeccc-cCce
Confidence 4667788899999999999863 23568999998 4444
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCccccccc-c--eeecccccCC-----------
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-R--ILRDAAESHG----------- 318 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~--~~~~~~~~~~----------- 318 (501)
.. +..+...+..++|+|+| +.|++++.++.+.+||........... + ....+.....
T Consensus 172 ~~--------~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (360)
T d1k32a3 172 FA--------ATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242 (360)
T ss_dssp EE--------CSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSC
T ss_pred ee--------ecccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcc
Confidence 43 44566778899999999 999999999999999976543211100 0 0000000000
Q ss_pred ----------------------CcceeeecccceeEEEEeeCC---CEEEEEc-CCcEEEEEeeCCCCceeEeecccccc
Q 010801 319 ----------------------SKSFFTEIIASISDIKFANDG---QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLR 372 (501)
Q Consensus 319 ----------------------~~~~~~~h~~~i~~~~~sp~~---~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~ 372 (501)
....+..+...+..+.+.+.+ .+++++. ++.|++||+.+ ++ ...+.+ .+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~~~~---~v 317 (360)
T d1k32a3 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-RK-VTEVKN---NL 317 (360)
T ss_dssp CCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-CC-EEEEEE---EE
T ss_pred cccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-Ce-EEEecC---Cc
Confidence 000111122222222222222 2333443 37899999874 33 333332 22
Q ss_pred ccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCc
Q 010801 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (501)
.+++|+|||++|++++.||.|++||++.++.. .++..+..+
T Consensus 318 ---------------~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~-~~~~~d~~~ 358 (360)
T d1k32a3 318 ---------------TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE-RTVETDKRP 358 (360)
T ss_dssp ---------------EEEEECTTSCEEEEEETTSCEEEEESSCTTSC-EECCCCSSC
T ss_pred ---------------CEEEECCCCCEEEEEECCCeEEEEECCCCCcc-eEEEecccc
Confidence 68999999999999999999999999988553 555444433
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.3e-25 Score=214.62 Aligned_cols=325 Identities=8% Similarity=-0.010 Sum_probs=210.2
Q ss_pred EccCC--CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 40 FDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 40 ~s~~g--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
++.|. -++++++.||+|+|||+.+++. +..+..|. .+.
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~---------------------------~~~l~~g~-------------~~~ 65 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY-------------AVH 65 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSE---------------------------EEEEECCS-------------SEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcE---------------------------EEEEeCCC-------------Cee
Confidence 44443 3567788999999999998764 36676664 488
Q ss_pred EEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceE
Q 010801 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (501)
.++|+ |||+++++++.|++|++||+.+++.......
T Consensus 66 ~vafS--PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i------------------------------------------ 101 (426)
T d1hzua2 66 ISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEI------------------------------------------ 101 (426)
T ss_dssp EEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEE------------------------------------------
T ss_pred EEEEC--CCCCEEEEEeCCCCEEEEEccCCceeEEEEE------------------------------------------
Confidence 99998 8999999999999999999998875433211
Q ss_pred EEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCC----CCCCcccceE
Q 010801 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS----NMDDLTEVIT 271 (501)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~ 271 (501)
+.. .+|...+.+++|+|||++++++ .++.+++||... ......+..... ....+.....
T Consensus 102 -------------~~~-~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (426)
T d1hzua2 102 -------------KIG-IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVA 166 (426)
T ss_dssp -------------ECC-SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEE
T ss_pred -------------eCC-CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc-cceeEEeeccCCCccceeecCCCcee
Confidence 111 4667777888999999987654 899999999994 444443211100 0011223334
Q ss_pred EEEEecCCCcEEEE-EeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-C
Q 010801 272 SAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M 348 (501)
Q Consensus 272 ~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~ 348 (501)
.+.+++++ ..++. ....+.+.+++....... .....++...+..+.|+|++++++++. + .
T Consensus 167 ~i~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~ 229 (426)
T d1hzua2 167 AIIASHEH-PEFIVNVKETGKVLLVNYKDIDNL----------------TVTSIGAAPFLADGGWDSSHRYFMTAANNSN 229 (426)
T ss_dssp EEEECSSS-SEEEEEETTTTEEEEEECSSSSSC----------------EEEEEECCSSEEEEEECTTSCEEEEEETTCS
T ss_pred EEEECCCC-CEEEEecCCCCeEEEEEeccccce----------------eeEEeccCCccEeeeECCCCcEEEeeeeccc
Confidence 45555555 33333 223344555544433211 011123456789999999999988774 3 8
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCC-cEE--EEEeCCCeEEEEecCCCC------cc
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHF--ATGSYSNLLRIFSHGVGS------AG 419 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l--~s~~~dg~i~iwd~~~~~------~~ 419 (501)
.+.+++... ++.+............ ....+..++ ..+ ++.+.|+.+.+|+..... ..
T Consensus 230 ~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~ 295 (426)
T d1hzua2 230 KVAVIDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 295 (426)
T ss_dssp EEEEEETTT-TEEEEEEECSSCCCCS-------------CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred ceeeeeccc-ccEEEEeccCCccccc-------------ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence 899999985 7766666544332211 123333322 222 234457888888875532 34
Q ss_pred eEEEecccCcccceeeccCCccccCccceee-------eecccce-eeccccC--Cccc---------ccccCCCeEEEE
Q 010801 420 GITVEAGKNENRKPILQAAPRARRSSLSNLT-------RGLYRQA-HENSSSG--HHEL---------SYNLSSKLLHLA 480 (501)
Q Consensus 420 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-------~~~~~~~-~iw~~~~--~~~~---------~~~~~~~i~~~~ 480 (501)
...+.+|...+..++++| ++++ |+ +++.++. ++|+... .... ..++...|.+++
T Consensus 296 ~~~l~g~~~~v~~v~~sP--dg~~-----l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~ 368 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 368 (426)
T ss_dssp EEEEECSSSCCCCEECCT--TCSE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred eEEEecCCCceeEEEcCC--CCce-----EEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEE
Confidence 578999999999999999 7776 66 5667788 9995432 2211 235667899999
Q ss_pred EccCCCEEEEee------CCeEEEEeC
Q 010801 481 WHPTTNLIACAN------GNSLFFHYA 501 (501)
Q Consensus 481 ~sp~~~~la~~~------~~~~~i~~~ 501 (501)
|||||++|.+++ ++.+.||++
T Consensus 369 fSpDGk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 369 YNKRGDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp ECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred ECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence 999999775432 344999874
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-24 Score=200.93 Aligned_cols=220 Identities=9% Similarity=0.016 Sum_probs=150.1
Q ss_pred eEeeeccCCcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccC
Q 010801 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (501)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (501)
.+...++|+ +.|++|+|+ |++++|++|+.||+|+|||++.+.....
T Consensus 3 ~v~~~~~h~------------d~I~~l~fs--p~~~~L~s~s~Dg~v~iwd~~~~~~~~~-------------------- 48 (342)
T d1yfqa_ 3 IVQIEQAPK------------DYISDIKII--PSKSLLLITSWDGSLTVYKFDIQAKNVD-------------------- 48 (342)
T ss_dssp EEECSSCCS------------SCEEEEEEE--GGGTEEEEEETTSEEEEEEEETTTTEEE--------------------
T ss_pred eEEcCCCCC------------CCEEEEEEe--CCCCEEEEEECCCeEEEEEccCCCcceE--------------------
Confidence 456678898 999999998 7899999999999999999976542211
Q ss_pred ccccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCC-CEEEEE-cCCeEEEEECCCCC
Q 010801 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISD 250 (501)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~-~d~~i~iwd~~~~~ 250 (501)
.... .+|...|.+++|+|++ .+|++| .|+.|++|++....
T Consensus 49 ------------------------------------~~~~--~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~ 90 (342)
T d1yfqa_ 49 ------------------------------------LLQS--LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp ------------------------------------EEEE--EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred ------------------------------------EEEe--cCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc
Confidence 1111 3789999999999865 577888 99999999998544
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
..... ...+........+.++. ..+++++.++.+++||++.............. ..+....
T Consensus 91 ~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~-----------~~~~~~~ 151 (342)
T d1yfqa_ 91 SFQAL-------TNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-----------NNTKVKN 151 (342)
T ss_dssp SEEEC-------BSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS-----------SSSSSCC
T ss_pred ccccc-------ccccccccccccccccc-ccccccccccccceeeccccccceeeeccccc-----------cccccee
Confidence 33321 22333444555566676 89999999999999999875433211111111 0012345
Q ss_pred eEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE-cCCCcEEEEEeCCCeE
Q 010801 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLL 408 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i 408 (501)
....+.+++..+++++ ++.|++||++. ............... . .....+ ..++..+++++.||.+
T Consensus 152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~s~dg~~ 218 (342)
T d1yfqa_ 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPL-CEDDNGTIEESGLKY---------Q---IRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp CEEEEEECSSEEEEEESTTEEEEEESSC-CTTCCCEEEECSCSS---------C---EEEEEECSGGGCEEEEEETTSEE
T ss_pred eeeeeeccCCceeeecCCCcEEEEeccc-Ccccceeeeeccccc---------c---eeeeEeecCCCCEEEeecCCCeE
Confidence 5667788888888875 59999999975 443332222211110 0 034444 4467899999999999
Q ss_pred EEEecCCC
Q 010801 409 RIFSHGVG 416 (501)
Q Consensus 409 ~iwd~~~~ 416 (501)
.+|+....
T Consensus 219 ~v~~~~~~ 226 (342)
T d1yfqa_ 219 AVEFFDDQ 226 (342)
T ss_dssp EEEECCTT
T ss_pred EEEEecCC
Confidence 99998754
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1e-24 Score=207.97 Aligned_cols=329 Identities=8% Similarity=-0.016 Sum_probs=215.1
Q ss_pred ccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEE
Q 010801 41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120 (501)
Q Consensus 41 s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 120 (501)
+++.-++++.+.||+|.|||..+++. +..+..|. .+..++
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v---------------------------~~~~~~g~-------------~~~~v~ 68 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEI---------------------------KTVLDTGY-------------AVHISR 68 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECSS-------------CEEEEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcE---------------------------EEEEeCCC-------------CeeEEE
Confidence 34444458889999999999998764 36666553 389999
Q ss_pred EeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEe
Q 010801 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN 200 (501)
Q Consensus 121 ~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~ 200 (501)
|+ |||+++++++.|++|++||+.+++.....
T Consensus 69 fS--pDG~~l~~~s~dg~v~~~d~~t~~~~~~~----------------------------------------------- 99 (432)
T d1qksa2 69 LS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVA----------------------------------------------- 99 (432)
T ss_dssp EC--TTSCEEEEEETTSEEEEEETTSSSCCEEE-----------------------------------------------
T ss_pred EC--CCCCEEEEEcCCCCEEEEEeeCCCceEEE-----------------------------------------------
Confidence 98 89999999999999999999887633221
Q ss_pred ccCceeeeeeEeecCCcccceEEEEecCCCCEE-EEE-cCCeEEEEECCCCCeeeeeeecCCC----CCCCcccceEEEE
Q 010801 201 VGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPS----NMDDLTEVITSAE 274 (501)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~ 274 (501)
.++.. .+|.+.+.+.+|+|||++| +++ .+++|++||.. ..+....+..... ....+......+.
T Consensus 100 --------~i~~~-~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (432)
T d1qksa2 100 --------EIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 169 (432)
T ss_dssp --------EEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred --------EEecC-CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc-cccceeeeccCCccccceeccCCCceeEEE
Confidence 11111 3566677778899999987 556 89999999999 4455544322110 1123456677899
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEE
Q 010801 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKL 352 (501)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~l 352 (501)
++|++..++++...++.|.+||..+.+.. ++... .+...+..++|+|||+++++++ + +.+.+
T Consensus 170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~----~~~~i------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v 233 (432)
T d1qksa2 170 ASHYRPEFIVNVKETGKILLVDYTDLNNL----KTTEI------------SAERFLHDGGLDGSHRYFITAANARNKLVV 233 (432)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEE----EEEEE------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred ECCCCCEEEEEEccCCeEEEEEccCCCcc----eEEEE------------cccCccccceECCCCCEEEEeccccceEEE
Confidence 99999445566777899999998876432 22221 1235678999999999888764 3 88999
Q ss_pred EEeeCCCCceeEeeccccc-----cc-----------cccc-------------cCCCCCcceeeEEEEcCCCcEEEEEe
Q 010801 353 WDIRMDSTPVATFKIHEHL-----RP-----------KLCD-------------LYNNDSIFDKFECSVSGDGLHFATGS 403 (501)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~-----~~-----------~~~~-------------~~~~~~~~~~~~~~~s~~~~~l~s~~ 403 (501)
+|..+ .+.+..+...... .. .... .........+....++|++..+++++
T Consensus 234 ~d~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s 312 (432)
T d1qksa2 234 IDTKE-GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT 312 (432)
T ss_dssp EETTT-TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred eeccc-ceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEe
Confidence 99874 5444433221100 00 0000 00000111234556667777777777
Q ss_pred CCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeeecccce-eeccccCCcccccccCCCeEEEEEc
Q 010801 404 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWH 482 (501)
Q Consensus 404 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~~~~~~~~~~~~i~~~~~s 482 (501)
.+...++|...+.. .|......+++ | +++. +++++.|+. ++|...+. ..+.++...|.+++||
T Consensus 313 ~p~~~~lw~~~~~~-------~~~~~~~sv~v-p--Dg~~-----la~~s~d~~~k~w~~~~~-~~l~~~~~~v~~~~fS 376 (432)
T d1qksa2 313 HPNSQYLYVDATLN-------PEAEISGSVAV-F--DIKA-----MTGDGSDPEFKTLPIAEW-AGITEGQPRVVQGEFN 376 (432)
T ss_dssp CTTCSEEEEECTTC-------SSHHHHTCEEE-E--EGGG-----CCCSSSCCCEEEECHHHH-HTCCSSCCEEEEEEEC
T ss_pred cCCccceeecccCC-------CCCCeeeEEEE-E--echh-----hcccccCCceEecccccc-cccCCCCCcEEEeEEC
Confidence 77777777655431 12222333443 4 7777 999999999 99965433 2344677789999999
Q ss_pred cCCCEEEEee------CCeEEEEeC
Q 010801 483 PTTNLIACAN------GNSLFFHYA 501 (501)
Q Consensus 483 p~~~~la~~~------~~~~~i~~~ 501 (501)
|||++|+++. ++.+.||++
T Consensus 377 ~DG~~v~~S~~~~~~~~g~i~i~D~ 401 (432)
T d1qksa2 377 KDGTEVWFSVWNGKDQESALVVVDD 401 (432)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCCCEEEEEEecCCCCCCcEEEEEC
Confidence 9999886654 345888874
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=3.1e-22 Score=190.95 Aligned_cols=333 Identities=10% Similarity=-0.017 Sum_probs=195.8
Q ss_pred cccccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcc
Q 010801 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (501)
+.+...+..++|||||++|++++.||+|++||+.+++.. ....+....+|.
T Consensus 58 l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~----------------------~~~~i~~~~~~~------- 108 (426)
T d1hzua2 58 IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----------------------KVAEIKIGIEAR------- 108 (426)
T ss_dssp EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----------------------EEEEEECCSEEE-------
T ss_pred EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee----------------------EEEEEeCCCCCc-------
Confidence 444567999999999999999999999999999988642 111122233454
Q ss_pred ccccccceeEEEEeecCCCCEEEEe-eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccc
Q 010801 109 SLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (501)
Q Consensus 109 ~~~~~~~V~~v~~~~~~~~~~l~s~-s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (501)
..+.+++|+ |||++++++ ..++.+++||..++............. .. ......+........++...+..
T Consensus 109 -----~~~~s~~~s--pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~~s~d~~~~~~ 179 (426)
T d1hzua2 109 -----SVESSKFKG--YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-DT-QTYHPEPRVAAIIASHEHPEFIV 179 (426)
T ss_dssp -----EEEECCSTT--CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-SS-CCEESCCCEEEEEECSSSSEEEE
T ss_pred -----ceEEeeeec--CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc-cc-eeecCCCceeEEEECCCCCEEEE
Confidence 667777786 899987655 589999999999988766543321110 00 00001111111111222221111
Q ss_pred ceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 188 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.. ...+.+.+++........ ... ..+...+..++|+|++++++++ .+..+.+++.. ..+....+... .
T Consensus 180 ~~-~~~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~-----~ 249 (426)
T d1hzua2 180 NV-KETGKVLLVNYKDIDNLT-VTS--IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVG-----K 249 (426)
T ss_dssp EE-TTTTEEEEEECSSSSSCE-EEE--EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT-TTEEEEEEECS-----S
T ss_pred ec-CCCCeEEEEEecccccee-eEE--eccCCccEeeeECCCCcEEEeeeecccceeeeecc-cccEEEEeccC-----C
Confidence 11 112233333333221111 111 3567788999999999988876 78889999999 55555443222 2
Q ss_pred cccceEEEEEecCCCcEE--EEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 266 LTEVITSAEFHPIYCNLL--AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l--~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
+........+...+.... +..+.|+.+.+|+...........+ ....+.+|...+..++|+||+++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~----------~~~~l~g~~~~v~~v~~sPdg~~l~ 319 (426)
T d1hzua2 250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK----------KVAELQGQGGGSLFIKTHPKSSHLY 319 (426)
T ss_dssp CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS----------EEEEEECSSSCCCCEECCTTCSEEE
T ss_pred cccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce----------EeEEEecCCCceeEEEcCCCCceEE
Confidence 222223344443331222 2334588999998766532211111 1123566888999999999999999
Q ss_pred E-------Ec-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE-EE----eCCCeEEE
Q 010801 344 S-------RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TG----SYSNLLRI 410 (501)
Q Consensus 344 ~-------~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~----~~dg~i~i 410 (501)
+ +. +++|+|||+++ ++...++..+..... ..+..-.+..++|||||++++ ++ +.+|.|+|
T Consensus 320 v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~~------~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v 392 (426)
T d1hzua2 320 VDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWAD------LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV 392 (426)
T ss_dssp ECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHC------CCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE
T ss_pred EeecCCCCcccCCEEEEEECCC-CCcCeEEeccchhcc------cCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE
Confidence 5 22 48999999986 665555432211000 000000126789999999764 33 35889999
Q ss_pred EecCCCCcceEEEeccc
Q 010801 411 FSHGVGSAGGITVEAGK 427 (501)
Q Consensus 411 wd~~~~~~~~~~~~~~~ 427 (501)
||.++.+ +...++++.
T Consensus 393 ~D~~T~k-~~~~i~~~~ 408 (426)
T d1hzua2 393 VDDKTLK-LKAVVKDPR 408 (426)
T ss_dssp EETTTTE-EEEEECCTT
T ss_pred EECCCCe-EEEEECCCC
Confidence 9999984 335565553
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1e-21 Score=186.87 Aligned_cols=327 Identities=10% Similarity=-0.021 Sum_probs=189.9
Q ss_pred cccceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (501)
....+..++|||||++|++++.||.|++||+.+++.. ....+....+|.
T Consensus 60 ~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~----------------------~~~~i~~~~~~~--------- 108 (432)
T d1qksa2 60 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT----------------------TVAEIKIGSEAR--------- 108 (432)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC----------------------EEEEEECCSEEE---------
T ss_pred CCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce----------------------EEEEEecCCCCC---------
Confidence 3457999999999999999999999999999887542 111122233444
Q ss_pred ccccceeEEEEeecCCCCEE-EEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 111 ~~~~~V~~v~~~~~~~~~~l-~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
+.+.+..|+ |||++| ++++.+++|++||..+++............ .. ......+....+..+++...++..
T Consensus 109 ---~~~~s~~~S--pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~-~~-~~~~~~~~~~~v~~s~dg~~~~vs- 180 (432)
T d1qksa2 109 ---SIETSKMEG--WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-DE-QEYHPEPRVAAILASHYRPEFIVN- 180 (432)
T ss_dssp ---EEEECCSTT--CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-TT-CCEESCCCEEEEEECSSSSEEEEE-
T ss_pred ---CeEEecccC--CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc-cc-eeccCCCceeEEEECCCCCEEEEE-
Confidence 556666675 899986 667789999999999998776654321110 00 001111222222333343332221
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcc
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (501)
....+.+.+|+.......+... ..+...+..++|+|+|++++++ .++.+.++|.. ..+....+... ....|.
T Consensus 181 ~~~~~~i~~~d~~~~~~~~~~~---i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~-~~~~~~~~~~g--~~~~~~ 254 (432)
T d1qksa2 181 VKETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTG--GQTPHP 254 (432)
T ss_dssp ETTTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECS--SSSBCC
T ss_pred EccCCeEEEEEccCCCcceEEE---EcccCccccceECCCCCEEEEeccccceEEEeecc-cceEEEEeccC--cccccc
Confidence 2236688888877543322222 2455678899999999988776 78899999998 45554443222 122344
Q ss_pred cceEEEEEecCCCcEEEEEe-CCCeEEEEEccCCcccccccceeecccccC-----------CCcc-----eeeecccce
Q 010801 268 EVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESH-----------GSKS-----FFTEIIASI 330 (501)
Q Consensus 268 ~~v~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~-----------~~~~-----~~~~h~~~i 330 (501)
.......+...+ ...++.. .++.|.+|+...........++... -..+ .... .+..|....
T Consensus 255 ~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~-~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~ 332 (432)
T d1qksa2 255 GRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGHPDNAWKILDS-FPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS 332 (432)
T ss_dssp TTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE-EECSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred CcccceecCCCC-ceecccccCCceEEecccccccccccccEEEEE-EEcCCCCeEEEEecCCccceeecccCCCCCCee
Confidence 444445444444 4444443 3788888887654322111111110 0000 0000 011122223
Q ss_pred eEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-----C
Q 010801 331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----Y 404 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~ 404 (501)
..+++ ||++.|++++ |+.+++|++.+ ...+ ..|...+ ..++|+|||++|+... .
T Consensus 333 ~sv~v-pDg~~la~~s~d~~~k~w~~~~-~~~l---~~~~~~v---------------~~~~fS~DG~~v~~S~~~~~~~ 392 (432)
T d1qksa2 333 GSVAV-FDIKAMTGDGSDPEFKTLPIAE-WAGI---TEGQPRV---------------VQGEFNKDGTEVWFSVWNGKDQ 392 (432)
T ss_dssp TCEEE-EEGGGCCCSSSCCCEEEECHHH-HHTC---CSSCCEE---------------EEEEECTTSSEEEEEEECCTTS
T ss_pred eEEEE-EechhhcccccCCceEeccccc-cccc---CCCCCcE---------------EEeEECCCCCEEEEEEecCCCC
Confidence 34444 7787777775 47888887753 2211 1232222 6899999999886543 4
Q ss_pred CCeEEEEecCCCCcceEEEec
Q 010801 405 SNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~ 425 (501)
+|.|.|||..+.+. ...+++
T Consensus 393 ~g~i~i~D~~T~k~-~~~i~~ 412 (432)
T d1qksa2 393 ESALVVVDDKTLEL-KHVIKD 412 (432)
T ss_dssp CCEEEEEETTTTEE-EEEECC
T ss_pred CCcEEEEECCCceE-EeEecC
Confidence 78999999999843 344444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=3.9e-20 Score=167.25 Aligned_cols=246 Identities=11% Similarity=0.109 Sum_probs=177.9
Q ss_pred cccccceEEEEEccCCCEEE-EEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhc
Q 010801 29 LQDVDIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (501)
Q Consensus 29 ~~h~~~v~~v~~s~~g~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (501)
+.....+..++|+|||++|+ +++.++.|++||+.+++. +..+..|.
T Consensus 28 i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~---------------------------~~~~~~~~------ 74 (301)
T d1l0qa2 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAGS------ 74 (301)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECSS------
T ss_pred EECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce---------------------------eeeeeccc------
Confidence 34456789999999999885 566889999999987753 34555553
Q ss_pred cccccccceeEEEEeecCCCCEEEE-eeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 108 KSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 108 ~~~~~~~~V~~v~~~~~~~~~~l~s-~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
.+..++|+ +++..+++ +..++.+.+|+..+++.....
T Consensus 75 -------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 112 (301)
T d1l0qa2 75 -------SPQGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTV--------------------------------- 112 (301)
T ss_dssp -------SEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------------------------
T ss_pred -------cccccccc--cccccccccccccceeeecccccceeeeec---------------------------------
Confidence 36788897 67776555 457789999999887654432
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
.+.....++.|+|++..++.+ .++.+.+|+..+ ......+ .
T Consensus 113 -----------------------------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~ 155 (301)
T d1l0qa2 113 -----------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTV-------S 155 (301)
T ss_dssp -----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEE-------E
T ss_pred -----------------------------cccccceEEEeecCCCeeeeeeccccceeeeeccc-cceeeec-------c
Confidence 233456789999999988664 789999999984 4444331 1
Q ss_pred CcccceEEEEEecCCCcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
+...+..+.++|++ ..+++++. ++.+.+|+....... ..... ......++++++++.++
T Consensus 156 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~~~ 215 (301)
T d1l0qa2 156 -VGRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAY 215 (301)
T ss_dssp -CCSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEE
T ss_pred -cCCCceEEEeeccc-cceeeecccccccccccccceeee----ecccc--------------cCCcceeeccccccccc
Confidence 33457889999998 76666665 467778877665432 22222 24577899999999876
Q ss_pred EE-c---CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE-EEEeCCCeEEEEecCCCCc
Q 010801 344 SR-D---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 344 ~~-~---~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~ 418 (501)
.+ . ++.|++||+.+ ++.+..+..+..+ ..++|+|||++| ++++.|+.|++||+++++.
T Consensus 216 v~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~va~spdg~~l~va~~~~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 216 VTNVDKYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278 (301)
T ss_dssp EEEECSSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred cccccceeeeeeeeecCC-CeEEEEEcCCCCE----------------EEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 54 2 27899999986 7777777655443 689999999976 5778899999999999844
Q ss_pred ceEEEe
Q 010801 419 GGITVE 424 (501)
Q Consensus 419 ~~~~~~ 424 (501)
..+++
T Consensus 279 -~~~~~ 283 (301)
T d1l0qa2 279 -TATMA 283 (301)
T ss_dssp -EEEEE
T ss_pred -EEEEe
Confidence 35554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=9.8e-20 Score=164.60 Aligned_cols=222 Identities=11% Similarity=0.120 Sum_probs=159.0
Q ss_pred EEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecCCC
Q 010801 48 AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 127 (501)
Q Consensus 48 atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~~~ 127 (501)
++++.|++|.|||+.+++. ..++... ..+..++|+ |+|
T Consensus 6 V~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g-------------~~p~~va~s--pdG 43 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKV---------------------------TATIPVG-------------SNPMGAVIS--PDG 43 (301)
T ss_dssp EEETTTTEEEEEETTTTEE---------------------------EEEEECS-------------SSEEEEEEC--TTS
T ss_pred EEECCCCEEEEEECCCCeE---------------------------EEEEECC-------------CCceEEEEe--CCC
Confidence 3567889999999998754 2444322 346789997 899
Q ss_pred CEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCcee
Q 010801 128 SMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 206 (501)
Q Consensus 128 ~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~ 206 (501)
++|+ +++.++.|++||+.+++.....
T Consensus 44 ~~l~v~~~~~~~i~v~d~~t~~~~~~~----------------------------------------------------- 70 (301)
T d1l0qa2 44 TKVYVANAHSNDVSIIDTATNNVIATV----------------------------------------------------- 70 (301)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEE-----------------------------------------------------
T ss_pred CEEEEEECCCCEEEEEECCCCceeeee-----------------------------------------------------
Confidence 8875 5568899999999988755432
Q ss_pred eeeeEeecCCcccceEEEEecCCCCEEEE-E-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE
Q 010801 207 ARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (501)
Q Consensus 207 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 284 (501)
..+ ..+..++|++++..+++ + .++.+.+|+.. ..+....+ . +...+.++.|+|++..+++
T Consensus 71 --------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~-~~~~~~~~~~~~dg~~~~~ 132 (301)
T d1l0qa2 71 --------PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTV-------K-TGKSPLGLALSPDGKKLYV 132 (301)
T ss_dssp --------ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------E-CSSSEEEEEECTTSSEEEE
T ss_pred --------ecc-ccccccccccccccccccccccceeeecccc-cceeeeec-------c-ccccceEEEeecCCCeeee
Confidence 222 24678999999987765 5 78899999998 44444432 2 3345688999999944455
Q ss_pred EEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCce
Q 010801 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV 362 (501)
Q Consensus 285 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~ 362 (501)
++..++.+.+|+..+.... ..+.. ...+..++++|++++++++. + +.+.+|+... .+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 193 (301)
T d1l0qa2 133 TNNGDKTVSVINTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVI 193 (301)
T ss_dssp EETTTTEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred eeccccceeeeecccccee----eeccc--------------CCCceEEEeeccccceeeecccccccccccccc-eeee
Confidence 6667899999999887543 22222 34578899999999888764 4 7777887763 5555
Q ss_pred eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC---CCeEEEEecCCCC
Q 010801 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGS 417 (501)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~ 417 (501)
.....+... ..++|+++++.++.++. ++.|++||+.+++
T Consensus 194 ~~~~~~~~~----------------~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~ 235 (301)
T d1l0qa2 194 DTVKVEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (301)
T ss_dssp EEEECSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred ecccccCCc----------------ceeeccccccccccccccceeeeeeeeecCCCe
Confidence 555544433 58999999998776543 4789999998874
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=6.7e-21 Score=175.96 Aligned_cols=295 Identities=8% Similarity=0.030 Sum_probs=189.6
Q ss_pred EEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeec-cCCcchhhccccccccce
Q 010801 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 38 v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V 116 (501)
++|+++++||++++.|++|.|||+.+++. +.+++ .|. ..+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~---------------------------~~t~~~~~~------------~~p 42 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPDK------------FGP 42 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSSC------------CSS
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCE---------------------------EEEEEcCCC------------CCc
Confidence 47899999999999999999999997753 35454 334 567
Q ss_pred eEEEEeecCCCCEEEE-eeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccccccee-----
Q 010801 117 NRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW----- 190 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s-~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 190 (501)
.+++|+ |||+++++ ++.++.|++||+.+++........... ......+....+++++..++.+..
T Consensus 43 ~~l~~s--pDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~-------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~ 113 (346)
T d1jmxb_ 43 GTAMMA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------GEVGRSMYSFAISPDGKEVYATVNPTQRL 113 (346)
T ss_dssp CEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------TEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred ceEEEC--CCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc-------cccCCceEEEEEecCCCEEEEEecCCcce
Confidence 899998 89988755 557899999999998876654332111 111123344555666666654432
Q ss_pred -----ccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCC
Q 010801 191 -----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 191 -----~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
..+..+.+|+.........+... .....+..+.+++++..++++ +.+.+|++.+ .+....+...
T Consensus 114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~------ 182 (346)
T d1jmxb_ 114 NDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVAG--PDIYKMDVKT-GKYTVALPLR------ 182 (346)
T ss_dssp SSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEES--SSEEEECTTT-CCEEEEECST------
T ss_pred eeeeccCcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEeC--CcceEEEccC-CCEEEEEecC------
Confidence 23556788887765433333322 123345556677777665543 4578899874 3344332111
Q ss_pred cccceEEEEEecCCC-------------------------cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCc
Q 010801 266 LTEVITSAEFHPIYC-------------------------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~-------------------------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (501)
.....+.++|++. ..++++..++.+.+||+.++.... .
T Consensus 183 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------ 245 (346)
T d1jmxb_ 183 --NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT---Q------------ 245 (346)
T ss_dssp --TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE---E------------
T ss_pred --CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE---E------------
Confidence 1112222333331 233334445566667766554221 1
Q ss_pred ceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEE
Q 010801 321 SFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 400 (501)
Q Consensus 321 ~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 400 (501)
.+..|...+..+.+++++.+++...++.|++||..+ ++.+..+..... + .+++|+|||++|+
T Consensus 246 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~---------------~~va~s~DG~~l~ 307 (346)
T d1jmxb_ 246 -EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDHT-Y---------------YCVAFDKKGDKLY 307 (346)
T ss_dssp -EEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSSC-C---------------CEEEECSSSSCEE
T ss_pred -EeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCCC-E---------------EEEEEcCCCCEEE
Confidence 122356678899999999998887778999999986 777777654332 2 6899999999999
Q ss_pred EEeCCCeEEEEecCCCCcceEEEeccc
Q 010801 401 TGSYSNLLRIFSHGVGSAGGITVEAGK 427 (501)
Q Consensus 401 s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (501)
+++.|+.|++||+++++.+ .+++.+.
T Consensus 308 v~~~d~~v~v~D~~t~~~i-~~i~~p~ 333 (346)
T d1jmxb_ 308 LGGTFNDLAVFNPDTLEKV-KNIKLPG 333 (346)
T ss_dssp EESBSSEEEEEETTTTEEE-EEEECSS
T ss_pred EEeCCCcEEEEECccCCEE-EEEECCC
Confidence 9999999999999988444 5555443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=5.1e-20 Score=169.23 Aligned_cols=255 Identities=10% Similarity=0.069 Sum_probs=171.9
Q ss_pred CEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeec
Q 010801 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (501)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~ 124 (501)
+|+++++.|++|.|||+.+++. +..+..+... ..+..++|+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~---------------------------~~~i~~~~~~----------~~~~~i~~s-- 42 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADAG----------PTPMVPMVA-- 42 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTCT----------TCCCCEEEC--
T ss_pred eEEEEEcCCCEEEEEECCCCeE---------------------------EEEEECCCCC----------CCccEEEEC--
Confidence 5899999999999999997754 3445433210 557899998
Q ss_pred CCCCEEE-EeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccC
Q 010801 125 PNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (501)
Q Consensus 125 ~~~~~l~-s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~ 203 (501)
|||++++ +++.++.|.+||+.+++..........
T Consensus 43 pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~--------------------------------------------- 77 (337)
T d1pbyb_ 43 PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--------------------------------------------- 77 (337)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---------------------------------------------
T ss_pred CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC---------------------------------------------
Confidence 8998875 556899999999999887654422100
Q ss_pred ceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c------------CCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
..+...+..++|+|+++.++++ . +..+.+||.. .......+ . +...+
T Consensus 78 -----------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~-------~-~~~~~ 137 (337)
T d1pbyb_ 78 -----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAF-------E-APRQI 137 (337)
T ss_dssp -----------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEE-------E-CCSSC
T ss_pred -----------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc-CCeEEEec-------c-ccCCc
Confidence 1223345568999999988775 3 4678889988 44444432 1 33456
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccc---------------cceeecccc--------------------
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS---------------ARILRDAAE-------------------- 315 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------------~~~~~~~~~-------------------- 315 (501)
..++|+|+| +++++++. .+.+||..+++..... ...+.....
T Consensus 138 ~~~~~s~dg-~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T d1pbyb_ 138 TMLAWARDG-SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp CCEEECTTS-SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred eEEEEcCCC-CEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeee
Confidence 789999999 88888764 4678998776432100 000000000
Q ss_pred --------------cCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCC
Q 010801 316 --------------SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN 381 (501)
Q Consensus 316 --------------~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (501)
.......+..+...+..+.++|++.+++.+ ++.|++||+.+ ++.+..+......
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~-~~~~~~~~~~~~~---------- 282 (337)
T d1pbyb_ 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY---------- 282 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------
T ss_pred cccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCC-CcEEEEEcCCCCE----------
Confidence 000000123445566777888888887665 48999999986 7777777543322
Q ss_pred CCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 382 ~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
.+++|+|||++|++++.|+.|+|||.++++.+ .+++.
T Consensus 283 ------~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v-~~i~~ 319 (337)
T d1pbyb_ 283 ------YSVNVSTDGSTVWLGGALGDLAAYDAETLEKK-GQVDL 319 (337)
T ss_dssp ------CEEEECTTSCEEEEESBSSEEEEEETTTCCEE-EEEEC
T ss_pred ------EEEEECCCCCEEEEEeCCCcEEEEECCCCcEE-EEEEC
Confidence 68999999999999999999999999988544 45543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=2.7e-18 Score=160.28 Aligned_cols=323 Identities=9% Similarity=-0.010 Sum_probs=198.5
Q ss_pred ccccceEEEEEccCCCEEEEEe-----cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
.+..++.+++++|||+.+++.. .++.|.+||..+++. +..+.++.
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~---------------------------~~~~~~~~--- 67 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF--- 67 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE---------------------------EEEEeCCC---
Confidence 4678899999999999987642 346799999887764 24555554
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (501)
...++|+ |||++|++++ .++.|.+||..+++............. .......
T Consensus 68 -----------~~~~a~S--pDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~------~~~~~~~ 128 (373)
T d2madh_ 68 -----------LPNPVAA--HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF------DVGPYSW 128 (373)
T ss_pred -----------CccEEEc--CCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCccee------EeccCCC
Confidence 3368897 8999998875 457899999999987765533221110 0001112
Q ss_pred ccCCCCCCcccccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCee
Q 010801 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQC 252 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~ 252 (501)
...+.++...+....+..++.+.+|+...... ..+.....++.++|+++.++ +. .|+.+.+|+... ...
T Consensus 129 ~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~-~~~ 199 (373)
T d2madh_ 129 MNANTPNNADLLFFQFAAGPAVGLVVQGGSSD--------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG-GAA 199 (373)
T ss_pred cEEEEeCCCcEEEEEEcCCCceEEeeccCCeE--------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC-cee
Confidence 22334444444444444556677777664321 23334566888999998764 45 899999999884 333
Q ss_pred eeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeE
Q 010801 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 332 (501)
....... ....+.......+.+.+++ .++..+.++.+.+|+......... ..+.. .................
T Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~ 271 (373)
T d2madh_ 200 GAGLVGA-MLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNK--APIDA---LSGGRKADTWRPGGWQQ 271 (373)
T ss_pred eEEEeee-ccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEE--Eeecc---ccCcEEeeeeccCccee
Confidence 3321111 0111222233445555554 555667889999999887643211 01111 00000000011233455
Q ss_pred EEEeeCCCEEE----------EEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcE--E
Q 010801 333 IKFANDGQHLL----------SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH--F 399 (501)
Q Consensus 333 ~~~sp~~~~l~----------~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l 399 (501)
++++|++..++ +.. ++.+.+||..+ ++.+..+...... ..++|+|||+. +
T Consensus 272 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~ 334 (373)
T d2madh_ 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLY 334 (373)
T ss_pred eEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEecCCCCe----------------eEEEECCCCCEEEE
Confidence 66666666544 222 37899999986 7777777643332 68999999984 5
Q ss_pred EEEeCCCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 400 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
++++.|+.|++||+.+++. ...+..+......+++.
T Consensus 335 vt~~~d~~v~v~D~~tg~~-~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 335 ALSAGTEVLHIYDAGAGDQ-DQSTVELGSGPQVLSVM 370 (373)
T ss_pred EEeCCCCeEEEEECCCCCE-EEEECCCCCCCcEEEEe
Confidence 6889999999999999954 57887776666666554
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=2.9e-19 Score=164.14 Aligned_cols=282 Identities=11% Similarity=0.020 Sum_probs=183.2
Q ss_pred CEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCceee
Q 010801 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (501)
Q Consensus 128 ~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~ 207 (501)
.++++++.|++|++||+.+++.......
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~---------------------------------------------------- 29 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITI---------------------------------------------------- 29 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC----------------------------------------------------
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEEC----------------------------------------------------
Confidence 4799999999999999999886654321
Q ss_pred eeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEE
Q 010801 208 RCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285 (501)
Q Consensus 208 ~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 285 (501)
..+...+.+++|+|||++++ ++ .++.|.+||+.+ ++.+..+... ....+...+..++|+|++ +.+++
T Consensus 30 -------~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~--~~~~~~~~~~~v~~s~dg-~~l~~ 98 (337)
T d1pbyb_ 30 -------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLS--TPEERVKSLFGAALSPDG-KTLAI 98 (337)
T ss_dssp -------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECC--BTTEEEECTTCEEECTTS-SEEEE
T ss_pred -------CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEecC--CCcccccceeeEEEcCCC-cEEEE
Confidence 23445677899999999874 56 899999999995 4444433222 122233456689999999 87777
Q ss_pred Ee------------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEE
Q 010801 286 SS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 353 (501)
Q Consensus 286 ~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lw 353 (501)
+. .+..+.+||..+++.. ..+.. ...+..++|+|||+++++++ +.+.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~-~~~~~~ 159 (337)
T d1pbyb_ 99 YESPVRLELTHFEVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGLG-RDLHVM 159 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEES-SSEEEE
T ss_pred eecCCcceeeeccccccceeeccccCCeEE----Eeccc--------------cCCceEEEEcCCCCEEEEEc-CCccee
Confidence 65 3577888888877543 23322 34678899999999999875 568899
Q ss_pred EeeCCCCceeEeecccccccccccc--------CCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 354 DIRMDSTPVATFKIHEHLRPKLCDL--------YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
|..+ ++....+..+.......... ................+...+..+..++.+.+|+..++......+..
T Consensus 160 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
T d1pbyb_ 160 DPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp ETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeec-CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence 9976 66666665543322110000 00000000011111122222223344567999999988766666777
Q ss_pred ccCcccceeeccCCccccCccceeeeecccce-eeccccC-CcccccccCCCeEEEEEccCCCEEEEee-CCeEEEEeC
Q 010801 426 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 501 (501)
Q Consensus 426 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~-~~~~~i~~~ 501 (501)
+........+.+ ++.+ ++.+ ++. .+|+... .......+...+.+++|+|||++|++++ ++.+.||++
T Consensus 239 ~~~~~~~~~~~~--~~~~-----~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 239 MDVFYFSTAVNP--AKTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp CSSCEEEEEECT--TSSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CCcceEEEEecc--cceE-----EEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 777777777777 4443 3333 455 8885542 2233345667889999999999999887 555999974
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=2.3e-19 Score=165.49 Aligned_cols=292 Identities=10% Similarity=0.021 Sum_probs=187.3
Q ss_pred EEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEE
Q 010801 120 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 199 (501)
Q Consensus 120 ~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w 199 (501)
+|+ +++++|++++.|++|.+||+.+++......
T Consensus 3 a~~--~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~--------------------------------------------- 35 (346)
T d1jmxb_ 3 ALK--AGHEYMIVTNYPNNLHVVDVASDTVYKSCV--------------------------------------------- 35 (346)
T ss_dssp CCC--TTCEEEEEEETTTEEEEEETTTTEEEEEEE---------------------------------------------
T ss_pred cCC--CCCcEEEEEcCCCEEEEEECCCCCEEEEEE---------------------------------------------
Confidence 455 789999999999999999999988665431
Q ss_pred eccCceeeeeeEeecCCcccceEEEEecCCCCEEE-EE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEec
Q 010801 200 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 277 (501)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 277 (501)
..+...+.+++|+|||++++ ++ .++.|.+||+.+ ++....+... .....+...+..++|+|
T Consensus 36 ---------------~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~~-~~~~~~~~~~~~v~~s~ 98 (346)
T d1jmxb_ 36 ---------------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLS-SVPGEVGRSMYSFAISP 98 (346)
T ss_dssp ---------------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESC-CSTTEEEECSSCEEECT
T ss_pred ---------------cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc-Ceeeeeeccc-ccccccCCceEEEEEec
Confidence 23455677899999999875 45 899999999994 4444433221 11122334567899999
Q ss_pred CCCcEEEEEe------------CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 278 IYCNLLAYSS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 278 ~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
+| +++++++ .++.+.+||..+++... .+..+. ....+..+.+++++++++++
T Consensus 99 DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 162 (346)
T d1jmxb_ 99 DG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK----PVRTFP-----------MPRQVYLMRAADDGSLYVAG 162 (346)
T ss_dssp TS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC----CSEEEE-----------CCSSCCCEEECTTSCEEEES
T ss_pred CC-CEEEEEecCCcceeeeeccCcceEEEEecccceeee----EEEeee-----------ccCceEEEEecCCCEEEEeC
Confidence 99 7777664 46778899988765431 111100 12356667777888766654
Q ss_pred cCCcEEEEEeeCCCCceeEeecccccccccccc-----C---CCCCccee--eEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-----Y---NNDSIFDK--FECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 346 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~--~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
+.+.+|++.+ ++.+..+..+.......... + .......+ ....+.+....++++..++.+.+|++.+
T Consensus 163 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
T d1jmxb_ 163 --PDIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239 (346)
T ss_dssp --SSEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred --CcceEEEccC-CCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCC
Confidence 5689999875 77777766544322111000 0 00000000 1112223344455666677899999999
Q ss_pred CCcceEEEecccCcccceeeccCCccccCccceeeeecccceeeccccC-CcccccccCCCeEEEEEccCCCEEEEee-C
Q 010801 416 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-G 493 (501)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~iw~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~-~ 493 (501)
+......+..+...+....+++ ++.. ++....+...+|+... .......+...+.+++|+|||++|++++ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d 312 (346)
T d1jmxb_ 240 GKTHTQEFADLTELYFTGLRSP--KDPN-----QIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 312 (346)
T ss_dssp CCEEEEEEEECSSCEEEEEECS--SCTT-----EEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred CceEEEEeecccceeEEEEEeC--CCCE-----EEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCC
Confidence 8777777788888888888887 4444 5666554448885432 2223334556789999999999999988 5
Q ss_pred CeEEEEeC
Q 010801 494 NSLFFHYA 501 (501)
Q Consensus 494 ~~~~i~~~ 501 (501)
+.+.||++
T Consensus 313 ~~v~v~D~ 320 (346)
T d1jmxb_ 313 NDLAVFNP 320 (346)
T ss_dssp SEEEEEET
T ss_pred CcEEEEEC
Confidence 56999974
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.5e-17 Score=152.36 Aligned_cols=249 Identities=9% Similarity=0.076 Sum_probs=155.9
Q ss_pred EEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccceeEEEEeecC
Q 010801 46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125 (501)
Q Consensus 46 ~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~~~ 125 (501)
.+++++.|++|+||++..... .+.+. ...|. +.+..|+|+ |
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~------------------------l~~~~-~~~~~------------~~v~~la~s--p 46 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGA------------------------LTLTQ-VVDVP------------GQVQPMVVS--P 46 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSC------------------------EEEEE-EEECS------------SCCCCEEEC--T
T ss_pred EEEECCCCCcEEEEEEcCCCC------------------------eEEEE-EEcCC------------CCEeEEEEe--C
Confidence 346677999999999975432 11222 22455 779999998 8
Q ss_pred CCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcceEEEeccCc
Q 010801 126 NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (501)
Q Consensus 126 ~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 204 (501)
||++|++++ .|+.|++|++..........
T Consensus 47 DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~-------------------------------------------------- 76 (333)
T d1ri6a_ 47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFA-------------------------------------------------- 76 (333)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEE--------------------------------------------------
T ss_pred CCCEEEEEECCCCeEEEEEEeCCCCcEEEe--------------------------------------------------
Confidence 999986665 58999999987654221110
Q ss_pred eeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcE
Q 010801 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (501)
Q Consensus 205 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 282 (501)
.. ..+...+..++|+|||++|+++ .++.|.+|+..... ..... ....+...+.++.++|++ +.
T Consensus 77 ------~~--~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~-~~~~~-----~~~~~~~~~~~v~~s~d~-~~ 141 (333)
T d1ri6a_ 77 ------AE--SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVV-----DVVEGLDGCHSANISPDN-RT 141 (333)
T ss_dssp ------EE--EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEE-----EEECCCTTBCCCEECTTS-SE
T ss_pred ------ee--cccCCCceEEEEcCCCCEEeecccCCCceeeecccccc-ceecc-----cccCCCccceEEEeeecc-ee
Confidence 00 1234456789999999999887 68899999887333 22221 133455667889999999 76
Q ss_pred EEEEe-CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCC
Q 010801 283 LAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDS 359 (501)
Q Consensus 283 l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~ 359 (501)
+++++ .+..|.+|+................ .........++|++++.+++... . +...+|+.....
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 210 (333)
T d1ri6a_ 142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVT-----------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 210 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-----------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred eeccccccceeeEEEeccCCcceeeeceeee-----------eecCCCccEEEEeccceeEEeeccccCceEEEeecccc
Confidence 66665 4678999998765432110000000 01124567899999999887653 3 788888875423
Q ss_pred CceeEe---eccccccccccccCCCCCcceeeEEEEcCCCcEEEEE-eCCCeEEEEecCCCCc
Q 010801 360 TPVATF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSA 418 (501)
Q Consensus 360 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~ 418 (501)
...... ....... ........+++++++++++.. ..++.+.+|++.....
T Consensus 211 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~ 264 (333)
T d1ri6a_ 211 GNIECVQTLDMMPENF---------SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 264 (333)
T ss_dssp SCCEEEEEEECSCTTC---------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred cceeeeeeeeeeecCC---------CccccceeEEEecccCceeeecccCCeEEEEEEcCCCC
Confidence 222211 1111100 001112568899999876654 5578999999876543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=9.8e-17 Score=146.82 Aligned_cols=267 Identities=12% Similarity=0.100 Sum_probs=169.7
Q ss_pred ccccccceEEEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhh
Q 010801 28 ELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (501)
Q Consensus 28 ~~~h~~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (501)
.++|.+.|..|+|||||++|++++ .|+.|++|++...... .+..... .+.
T Consensus 32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~-----------------------~~~~~~~-~~~----- 82 (333)
T d1ri6a_ 32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-----------------------LTFAAES-ALP----- 82 (333)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-----------------------EEEEEEE-ECS-----
T ss_pred EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc-----------------------EEEeeec-ccC-----
Confidence 456889999999999999996655 5899999999865431 1111111 122
Q ss_pred ccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCccc
Q 010801 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (501)
Q Consensus 107 ~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (501)
..+..++|+ |+|++|++++ .++.+.+|+...........
T Consensus 83 -------~~p~~l~~s--pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~------------------------------- 122 (333)
T d1ri6a_ 83 -------GSLTHISTD--HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD------------------------------- 122 (333)
T ss_dssp -------SCCSEEEEC--TTSSEEEEEETTTTEEEEEEEETTEEEEEEE-------------------------------
T ss_pred -------CCceEEEEc--CCCCEEeecccCCCceeeeccccccceeccc-------------------------------
Confidence 457789997 8999999887 47789999887654332210
Q ss_pred ccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
. ..+...+.++.++|+++.++.+ .+..|.+|+.............. ..
T Consensus 123 ---------------------------~-~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~ 172 (333)
T d1ri6a_ 123 ---------------------------V-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--VT 172 (333)
T ss_dssp ---------------------------E-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--EE
T ss_pred ---------------------------c-cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--ee
Confidence 0 3455667788999999988876 67889999987544332211000 01
Q ss_pred CCcccceEEEEEecCCCcEEEE-EeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 342 (501)
.........++|++++ ..++. ....+...+|+................ .+.. .........++++++++++
T Consensus 173 ~~~g~~p~~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 173 TVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIECVQTLDM---MPEN----FSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp CSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC---SCTT----CCSCCCEEEEEECTTSSEE
T ss_pred eecCCCccEEEEeccc-eeEEeeccccCceEEEeecccccceeeeeeeee---eecC----CCccccceeEEEecccCce
Confidence 2234556889999998 65554 445678888887554322111111111 0000 0113456778999999988
Q ss_pred EEEc--CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEecC
Q 010801 343 LSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (501)
Q Consensus 343 ~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd~~ 414 (501)
+... ++.+.+|++...+... ....+..... . ...++|+|||++|++++ .++.|++|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~---p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVL-SKEGFQPTET---------Q---PRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCE-EEEEEEECSS---------S---CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred eeecccCCeEEEEEEcCCCCEE-EEEEEeCCCC---------C---eeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 7653 4899999997633333 3322211100 0 05799999999887765 46899999654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=2.3e-17 Score=152.63 Aligned_cols=314 Identities=10% Similarity=0.017 Sum_probs=192.7
Q ss_pred eEEEEEccCCCEEEEEe-----cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 35 VSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 35 v~~v~~s~~g~~latg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+.-.+.+|||+.+++.. .++.|.+||..+++. +.++..+.
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~---------------------------~~~~~~g~-------- 48 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF-------- 48 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS--------
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE---------------------------EEEEECCC--------
Confidence 33446689999987753 355799999987753 34455444
Q ss_pred cccccceeEEEEeecCCCCEEEEee----------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCC
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s----------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
+..++|+ |||++|++++ .|+.|++||..+++............ ...........++
T Consensus 49 ------~~~~a~S--pDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~------~~~~~~~~~~~~s 114 (355)
T d2bbkh_ 49 ------LPNPVVA--DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR------FLVGTYPWMTSLT 114 (355)
T ss_dssp ------SCEEEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC------CCBSCCGGGEEEC
T ss_pred ------CCceEEc--CCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce------eecCCCCceEEEe
Confidence 4478998 8999887653 47899999999988776553322110 0111223334566
Q ss_pred CCCcccccceeccCcceEEEeccCceeeeeeEeec---CCcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeee
Q 010801 180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP---HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN 254 (501)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~ 254 (501)
++...+.......+..+.+|+.........+.... ..-......+.++++++.++.. .++.+.+++.....
T Consensus 115 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---- 190 (355)
T d2bbkh_ 115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---- 190 (355)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS----
T ss_pred cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc----
Confidence 67776666665566788889888754333222100 0001122345566666666554 45555555544211
Q ss_pred eeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEE
Q 010801 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (501)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 334 (501)
..+...+....+.+++ ..++.++.++.+.+|++..++.... .....+... .............++
T Consensus 191 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~---~~~~~~~p~~~~~~~ 255 (355)
T d2bbkh_ 191 ---------PEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFL--PAVEALTEA---ERADGWRPGGWQQVA 255 (355)
T ss_dssp ---------CTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEEC--CCEESSCHH---HHHTTEEECSSSCEE
T ss_pred ---------ceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEE--eccCCcccc---eEeeeeeccceEEEE
Confidence 1233344556778887 8888999999999999988753211 111110000 000000123446688
Q ss_pred EeeCCCEEEEEc-C----------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc--EEEE
Q 010801 335 FANDGQHLLSRD-Y----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFAT 401 (501)
Q Consensus 335 ~sp~~~~l~~~~-~----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~s 401 (501)
++|++..++... + +.|.+||..+ ++.+..+...... .+++|+|||+ ++++
T Consensus 256 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~v~ 318 (355)
T d2bbkh_ 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYAL 318 (355)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEEE
T ss_pred EeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCCCCE----------------EEEEEcCCCCeEEEEE
Confidence 999999877542 1 4699999986 7777777654432 5899999997 4567
Q ss_pred EeCCCeEEEEecCCCCcceEEEecccCccccee
Q 010801 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI 434 (501)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 434 (501)
++.|+.|++||+++++. ..++..+......+.
T Consensus 319 ~~~d~~i~v~D~~tg~~-~~~i~~~G~~p~~i~ 350 (355)
T d2bbkh_ 319 STGDKTLYIHDAESGEE-LRSVNQLGHGPQVIT 350 (355)
T ss_dssp ETTTTEEEEEETTTCCE-EEEECCCCSSCCEEE
T ss_pred ECCCCEEEEEECCCCCE-EEEEeCcCCCccEEE
Confidence 78899999999999954 466766544433333
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.64 E-value=2.2e-14 Score=137.76 Aligned_cols=160 Identities=13% Similarity=0.197 Sum_probs=107.1
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 36 ~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
..+.|.++++++.. .|+.+.+||+.+++.. ...-...+..|. ..
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~----------------------~~~~~~~~~~~~------------~~ 63 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSS----------------------VFLENSTFDEFG------------HS 63 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEE----------------------EEECTTTTTTSS------------SC
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEE----------------------EEEchhhhhhcc------------Cc
Confidence 35889999998874 5788999999988642 000012344555 77
Q ss_pred eeEEEEeecCCCCEEEEeeC---------CCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccc
Q 010801 116 INRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~---------d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
|.++.|+ ||+++|+.++. ++.+.+||+.+++...+
T Consensus 64 i~~~~~S--pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l---------------------------------- 107 (470)
T d2bgra1 64 INDYSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE---------------------------------- 107 (470)
T ss_dssp CCEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----------------------------------
T ss_pred cceeEEC--CCCCEEEEEECCcceeeeccCceEEEEECCCCccccc----------------------------------
Confidence 9999998 89999998853 35566777776653321
Q ss_pred cceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeec-CCCC-CC
Q 010801 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM-KPSN-MD 264 (501)
Q Consensus 187 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~-~~ 264 (501)
..+...+..+.|+|||+.++...++.+++|+... +...+...- .... +.
T Consensus 108 ----------------------------~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~-g~~~~~t~~~~~~~~~~ 158 (470)
T d2bgra1 108 ----------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN-LPSYRITWTGKEDIIYN 158 (470)
T ss_dssp ----------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTT-SCCEECCSCCBTTTEEE
T ss_pred ----------------------------ccCCccccccccccCcceeeEeecccceEEECCC-CceeeeeeccCCCcccc
Confidence 4677788999999999999999888999999884 433332100 0000 00
Q ss_pred ---------CcccceEEEEEecCCCcEEEEEeCCCe-EEEEEc
Q 010801 265 ---------DLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDM 297 (501)
Q Consensus 265 ---------~~~~~v~~v~~~p~~~~~l~~~~~dg~-i~~wd~ 297 (501)
........+.|+||| +.|+....|.. +..|++
T Consensus 159 g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 159 GITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp SBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEE
T ss_pred cccceeeeeeecCCccccEECCCC-CccceeEecCCcCceEEE
Confidence 012334568899999 88888766533 444443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.61 E-value=1e-12 Score=121.80 Aligned_cols=312 Identities=8% Similarity=-0.090 Sum_probs=190.0
Q ss_pred cceeEEEEeecCCCCEEEEe-----eCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 114 EKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~-----s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
+++..++++ |+++.++.. +.++.|.+||..+++........ ....+.++++++.++.+
T Consensus 21 ~p~~~~a~s--pdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~---------------~~~~~a~SpDG~~l~va 83 (373)
T d2madh_ 21 GPTNDEAPG--ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG---------------FLPNPVAAHSGSEFALA 83 (373)
T ss_pred CCccccccC--CCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC---------------CCccEEEcCCCCEEEEE
Confidence 789999997 889988764 24467999999999877654221 12245677777777665
Q ss_pred ee--------ccCcceEEEeccCceeeeeeEeecCCcccc-------eEEEEecCCCCEEEEE---cCCeEEEEECCCCC
Q 010801 189 EW--------TENMATKIANVGNSVHARCQKVYPHAHDFN-------INSISNNSDCETFVSA---DDLRINLWNLEISD 250 (501)
Q Consensus 189 ~~--------~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~-------v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~ 250 (501)
.. ..++.+.+||...... .... ..+... ...+.|+++++.++.. .++.+.+|+... .
T Consensus 84 ~~~~~~~~~~~~~~~v~v~D~~t~~~---~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-~ 158 (373)
T d2madh_ 84 STSFSRIAKGKRTDYVEVFDPVTFLP---IADI-ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG-S 158 (373)
T ss_pred eecCCcccccccceEEEEEECCCCcE---EEEE-ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC-C
Confidence 43 2356899999987533 2222 222222 2356788888876553 456788888773 3
Q ss_pred eeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccce
Q 010801 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 330 (501)
+... +.....++.++|++...+++.+.|+.+.+||...+.... ....+... .++....
T Consensus 159 ~~~~-----------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~ 216 (373)
T d2madh_ 159 SDDQ-----------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA----GLVGAMLT-------AAQNLLT 216 (373)
T ss_pred eEEE-----------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeE----EEeeeccc-------cCcccee
Confidence 3222 333457889999995677888999999999998875442 11110000 1112234
Q ss_pred eEEEEeeCCCEEEEEcCCcEEEEEeeCCCCcee--EeeccccccccccccCCCCCcceeeEEEEcCCCcE----------
Q 010801 331 SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH---------- 398 (501)
Q Consensus 331 ~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---------- 398 (501)
..+.+.+++.+++.+.++.+.+|+... ..... ....+........ .... ....+++++++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~d~~~~~~~~~~~~~ 290 (373)
T d2madh_ 217 QPAQANKSGRIVWPVYSGKILQADISA-AGATNKAPIDALSGGRKADT--WRPG---GWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred eeEEECCCceEEEecCCceEEEEEcCC-CeEEEEEeeccccCcEEeee--eccC---cceeeEEecCCCeEEEecCCCce
Confidence 556677777777776678999998864 33221 1111111100000 0000 0024556665554
Q ss_pred EEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccc--cCccceeeeecccce-eecc--ccCCcccccccC
Q 010801 399 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR--RSSLSNLTRGLYRQA-HENS--SSGHHELSYNLS 473 (501)
Q Consensus 399 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~iw~--~~~~~~~~~~~~ 473 (501)
+++...++.+.+||+.+++.+ ..+ .+...+..++|+| +|+ + +++++.++. .+|+ .++.+.....+.
T Consensus 291 ~~~~~~~~~v~~~d~~t~~~~-~~~-~~~~~~~~~a~sp--DG~~~l-----~vt~~~d~~v~v~D~~tg~~~~~~~~~g 361 (373)
T d2madh_ 291 WKLHAAAKEVTSVTGLVGQTS-SQI-SLGHDVDAISVAQ--DGGPDL-----YALSAGTEVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred EEeecCCCeEEEEECCCCcEE-EEe-cCCCCeeEEEECC--CCCEEE-----EEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence 445566788999999988554 444 3556678899999 554 4 578889998 9994 344555555565
Q ss_pred CCeEEEEEccC
Q 010801 474 SKLLHLAWHPT 484 (501)
Q Consensus 474 ~~i~~~~~sp~ 484 (501)
...+.|+..++
T Consensus 362 ~~P~~l~~~~~ 372 (373)
T d2madh_ 362 SGPQVLSVMNE 372 (373)
T ss_pred CCCcEEEEecC
Confidence 55666665543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=5.4e-13 Score=122.69 Aligned_cols=239 Identities=12% Similarity=0.024 Sum_probs=136.6
Q ss_pred EEEecCCCCEEEEE-----------cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe--CC
Q 010801 223 SISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SR 289 (501)
Q Consensus 223 ~l~~~~~~~~l~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~d 289 (501)
.++|+|||++|+++ .++.|++||..+ .+....+................++|+|++ +.+++++ .+
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~ 128 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPA 128 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSS
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC-CCEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCC
Confidence 68999999988753 368999999994 444444333222222223344568999999 7776664 46
Q ss_pred CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeec
Q 010801 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKI 367 (501)
Q Consensus 290 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~ 367 (501)
..+.+||..+++.. ..+..+.. . ..........+.+++|++.++... ++.+.+++... ... .
T Consensus 129 ~~~~~~~~~~~~~~----~~~~~~~~----~--~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~-~~~-----~ 192 (355)
T d2bbkh_ 129 PAVGVVDLEGKAFK----RMLDVPDC----Y--HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV-FHP-----E 192 (355)
T ss_dssp CEEEEEETTTTEEE----EEEECCSE----E--EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-CSC-----T
T ss_pred ceeeeeecCCCcEe----eEEecCCc----c--eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc-ccc-----e
Confidence 78999999887644 22222000 0 000012345567778877776543 26666666543 211 1
Q ss_pred cccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcce-EEEecccC----------cccceeec
Q 010801 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVEAGKN----------ENRKPILQ 436 (501)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~----------~v~~~~~~ 436 (501)
+...+ ....+.+++..++.++.++.+++|++..+.... .....+.. ....++++
T Consensus 193 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 257 (355)
T d2bbkh_ 193 DEFLI---------------NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257 (355)
T ss_dssp TSCBC---------------SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred eccee---------------eeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEe
Confidence 11111 346777888889999999999999998764321 12222222 22334444
Q ss_pred cCCccccCccceeeeeccc----------ce-eecccc-CCcccccccCCCeEEEEEccCCCE-E-EEee-CCeEEEEeC
Q 010801 437 AAPRARRSSLSNLTRGLYR----------QA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNL-I-ACAN-GNSLFFHYA 501 (501)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~----------~~-~iw~~~-~~~~~~~~~~~~i~~~~~sp~~~~-l-a~~~-~~~~~i~~~ 501 (501)
+ ++.. ++....+ .. .+|+.. ............+.+++|+|||+. | +++. ++.+++|++
T Consensus 258 ~--d~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 258 R--ALDR-----IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp T--TTTE-----EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred C--CCCe-----EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence 4 3332 2222111 22 455332 222222344556889999999984 3 3444 567999974
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=1.7e-13 Score=126.90 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=56.2
Q ss_pred eeEEEEeeCCCEEEEEc--C--------CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc--
Q 010801 330 ISDIKFANDGQHLLSRD--Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-- 397 (501)
Q Consensus 330 i~~~~~sp~~~~l~~~~--~--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-- 397 (501)
...++++|++..++... + ..|.+||..+ ++.+..+...... ..++|+|||+
T Consensus 266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~ 328 (368)
T d1mdah_ 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASD 328 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCE
T ss_pred ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCCce----------------eEEEECCCCCEE
Confidence 45688899988766431 1 3589999987 7777776644332 5899999997
Q ss_pred EEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 398 HFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 398 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
+++++..|+.|++||..+++.+ .+++.
T Consensus 329 ly~s~~~~~~v~v~D~~tgk~~-~~i~~ 355 (368)
T d1mdah_ 329 NYANSAGTEVLDIYDAASDQDQ-SSVEL 355 (368)
T ss_dssp EEEEETTTTEEEEEESSSCEEE-EECCC
T ss_pred EEEEeCCCCeEEEEECCCCCEE-EEEEC
Confidence 3467778999999999998543 45543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.48 E-value=3.3e-13 Score=124.25 Aligned_cols=224 Identities=10% Similarity=0.044 Sum_probs=132.1
Q ss_pred CcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcE-EEEEeCCCeE
Q 010801 216 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL-LAYSSSRGFV 292 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~-l~~~~~dg~i 292 (501)
.|.-.......+|||++|++. .+++|.++|+. ..+..+++.+ .+...+..++|+|++ +. .+++..+..+
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~-t~k~~~ii~i------P~g~gphgi~~spdg-~t~YV~~~~~~~v 140 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLD-IMKTDKITHI------PNVQAIHGLRLQKVP-KTNYVFCNAEFVI 140 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEEC------TTCCCEEEEEECCSS-BCCEEEEEECSCE
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECC-CCcEeeEEec------CCCCCccceEEeccC-CEEEEEeccCCcc
Confidence 344455556678999999775 78999999999 4444444321 245578999999998 63 2333333333
Q ss_pred ------------------EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC--C----
Q 010801 293 ------------------RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M---- 348 (501)
Q Consensus 293 ------------------~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~--~---- 348 (501)
..+|..+.+.. ..... ......+.++|||+++++++. .
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~----~qI~v--------------~~~p~~v~~spdGk~a~vt~~nse~~~~ 202 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAETMDVA----WQVIV--------------DGNLDNTDADYTGKYATSTCYNSERAVD 202 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTTCSEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSS
T ss_pred cccCcccccccccccceEEeecCccceee----EEEec--------------CCCccceEECCCCCEEEEEecCCCceEE
Confidence 33555444322 11111 245678889999988876532 1
Q ss_pred ------------------------------------cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE
Q 010801 349 ------------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (501)
Q Consensus 349 ------------------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (501)
.+.+++... .+.+..+.....+ ..+.+
T Consensus 203 id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~~v~~~IPvgksP----------------hGv~v 265 (441)
T d1qnia2 203 LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-SEFTRYIPVPKNP----------------HGLNT 265 (441)
T ss_dssp HHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-CSSEEEECCBSSC----------------CCEEE
T ss_pred EeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-CceEEEEeCCCCc----------------cCceE
Confidence 222222221 2333344333332 57999
Q ss_pred cCCCcEEE-EEeCCCeEEEEecCCCCcceEEEecccCcccce-------------eeccCCccccCccceeeeecccce-
Q 010801 393 SGDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-------------ILQAAPRARRSSLSNLTRGLYRQA- 457 (501)
Q Consensus 393 s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~- 457 (501)
+|||++++ ++..+++|.+||+++... .+..+.....++ .|.+ +|.. ..+..-|+.
T Consensus 266 SPDGkyl~~~~~~~~tvsv~d~~k~~~---~~~~~~~~~~~~~~~~~~glgplh~~fd~--~g~~-----yts~~~ds~v 335 (441)
T d1qnia2 266 SPDGKYFIANGKLSPTVSVIAIDKLDD---LFEDKIELRDTIVAEPELGLGPLHTTFDG--RGNA-----YTTLFIDSQV 335 (441)
T ss_dssp CTTSCEEEEECTTSSBEEEEEGGGHHH---HTTTSSCGGGGEEECCBCCSCEEEEEECS--SSEE-----EEEETTTTEE
T ss_pred CCCCCEEEEeCCcCCcEEEEEeehhhh---HhhccCCcceEEEeecccccCcccceecC--CceE-----EEcccccceE
Confidence 99999875 567799999999875321 111222222222 3333 4444 677777777
Q ss_pred eeccccCC-----------cc------cccccCCCeEEEEEccCCCEEEEee
Q 010801 458 HENSSSGH-----------HE------LSYNLSSKLLHLAWHPTTNLIACAN 492 (501)
Q Consensus 458 ~iw~~~~~-----------~~------~~~~~~~~i~~~~~sp~~~~la~~~ 492 (501)
..|+.+.. +. -..+|...+...+++|||++|++++
T Consensus 336 ~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 336 CKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred EEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 88854311 11 1246766777778999999999996
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.39 E-value=2.2e-11 Score=112.01 Aligned_cols=116 Identities=8% Similarity=-0.031 Sum_probs=79.6
Q ss_pred ceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCC-------ceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEE
Q 010801 329 SISDIKFANDGQHLLSRD--YMNLKLWDIRMDST-------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (501)
Q Consensus 329 ~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 399 (501)
....+.++|||++++++. +++|.+||+++..+ ....+.++.. .-......+|+++|..+
T Consensus 259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~------------~glgplh~~fd~~g~~y 326 (441)
T d1qnia2 259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE------------LGLGPLHTTFDGRGNAY 326 (441)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB------------CCSCEEEEEECSSSEEE
T ss_pred CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc------------cccCcccceecCCceEE
Confidence 457899999999987653 49999999864111 0111111111 11112457899999999
Q ss_pred EEEeCCCeEEEEecCC---------CCcceEEE-----ecccCcccceeeccCCccccCccceeeeecccce-eecccc
Q 010801 400 ATGSYSNLLRIFSHGV---------GSAGGITV-----EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 463 (501)
Q Consensus 400 ~s~~~dg~i~iwd~~~---------~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iw~~~ 463 (501)
.+...|..|..|++.. ...+...+ .+|...+....++| +|++ |+++++-.+ +.+..+
T Consensus 327 ts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p--dGk~-----l~s~~k~s~dr~~~~g 398 (441)
T d1qnia2 327 TTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA--DGKW-----LVVLSKFSKDRFLPVG 398 (441)
T ss_dssp EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC--CCCE-----EEEEESCCGGGSCCCS
T ss_pred EcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC--CCcE-----EEecCccccccCcCCC
Confidence 9999999999999742 11233333 58889999999999 8999 999977666 555444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.38 E-value=8.9e-12 Score=119.27 Aligned_cols=81 Identities=9% Similarity=0.117 Sum_probs=65.7
Q ss_pred ccccceEEEEEccCCCEEEEEec---------CCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccC
Q 010801 30 QDVDIVSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (501)
Q Consensus 30 ~h~~~v~~v~~s~~g~~latg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (501)
+|...|.++.|||||++||.++. ++.+.|||+.+++. ..+..|
T Consensus 59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~----------------------------~~l~~~ 110 (470)
T d2bgra1 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----------------------------ITEERI 110 (470)
T ss_dssp TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----------------------------CCSSCC
T ss_pred hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc----------------------------cccccC
Confidence 46678999999999999998753 56789999998754 346667
Q ss_pred CcchhhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeee
Q 010801 101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 101 ~~~~~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
. +.+..+.|+ |||+.++.. .++.+.+|+..+++.....
T Consensus 111 ~------------~~~~~~~~S--PDG~~ia~~-~~~~l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 111 P------------NNTQWVTWS--PVGHKLAYV-WNNDIYVKIEPNLPSYRIT 148 (470)
T ss_dssp C------------TTEEEEEEC--SSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred C------------ccccccccc--cCcceeeEe-ecccceEEECCCCceeeee
Confidence 6 779999998 899999986 4678999999988765543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.33 E-value=4.8e-11 Score=110.11 Aligned_cols=262 Identities=8% Similarity=0.002 Sum_probs=147.3
Q ss_pred EEEEEccCCCEEEEEe----------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchh
Q 010801 36 SAIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (501)
Q Consensus 36 ~~v~~s~~g~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (501)
..++|+|||++|++++ .|+.|.+||..+++.. ..+..+...
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~---------------------------~~i~~p~~~-- 118 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAP-- 118 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---------------------------EEEEETTSC--
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe---------------------------eeecCCccc--
Confidence 4689999999998754 4678999999877542 222222100
Q ss_pred hccccccccceeEEEEeecCCCCEEEEee-CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~~~~~~~l~s~s-~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
..........++|+ |||++++++. .++.+.+||+.+++............ ....+......
T Consensus 119 ---~~~~g~~p~~~a~S--pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~v~------- 180 (368)
T d1mdah_ 119 ---RFSVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH------IHPGAAATHYL------- 180 (368)
T ss_dssp ---SCCBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC------CEEEETTEEEC-------
T ss_pred ---eecccCCccceEEC--CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce------EccCCCceEEE-------
Confidence 00000223568997 8999998876 67999999999988776553321110 00011111111
Q ss_pred cccceeccCcceEEEeccCceeeeeeE--eecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (501)
...++.+.+++........... .....+...+....+.+++..+.+ .++.+.+++..... ...........
T Consensus 181 -----~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~ 253 (368)
T d1mdah_ 181 -----GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAG-ATMKAAIDGNE 253 (368)
T ss_dssp -----CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSC-CEEECCCCSSC
T ss_pred -----EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeecCCc-eEEEeeccccc
Confidence 2235555566554332111110 011334445556677777644433 44556666665222 11110000000
Q ss_pred -----CCCcccceEEEEEecCCCcEEEEEeCC---------CeEEEEEccCCcccccccceeecccccCCCcceeeeccc
Q 010801 263 -----MDDLTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (501)
Q Consensus 263 -----~~~~~~~v~~v~~~p~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (501)
..........++++|++ ..++....+ ..|.+||..+++.. ..+.. ..
T Consensus 254 ~~~~~~~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~----~~~~~--------------~~ 314 (368)
T d1mdah_ 254 SGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN--------------GH 314 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------EE
T ss_pred ceeeeeeecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcEe----EEecC--------------CC
Confidence 00011223457889998 555444322 35889999988644 22222 34
Q ss_pred ceeEEEEeeCCCE-E-EEEc-CCcEEEEEeeCCCCceeEeeccccc
Q 010801 329 SISDIKFANDGQH-L-LSRD-YMNLKLWDIRMDSTPVATFKIHEHL 371 (501)
Q Consensus 329 ~i~~~~~sp~~~~-l-~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~ 371 (501)
.+..++|+|||+. + +++. ++.|++||..+ ++.+.++.....+
T Consensus 315 ~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-gk~~~~i~~g~~P 359 (368)
T d1mdah_ 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred ceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-CCEEEEEECCCCC
Confidence 6889999999973 3 3443 59999999987 8888888765544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.28 E-value=2.1e-08 Score=91.58 Aligned_cols=186 Identities=8% Similarity=-0.027 Sum_probs=106.8
Q ss_pred cccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEE-EEeCCCeEE
Q 010801 217 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVR 293 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-~~~~dg~i~ 293 (501)
....+.++.|+|+|++++++ ....|.+|+....+.....-.. .........+.++|+|++ ++++ +...++.|.
T Consensus 143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~---~~~~~g~gPr~i~f~pdg-~~~yv~~e~~~~V~ 218 (365)
T d1jofa_ 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRIC 218 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEE
T ss_pred CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce---eecCCCCceEEEEECCCC-ceEEEeccCCCEEE
Confidence 34457899999999988886 4668999887644433211100 122234567999999999 6654 445589999
Q ss_pred EEEccCCccccc-ccceeec-ccccCCCcceeeecccceeEEEEeeCCCEEEEEc--C-----CcEEEEEeeCCCCceeE
Q 010801 294 LVDMRQSALCDH-SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-----MNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 294 ~wd~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~-----~~i~lwd~~~~~~~~~~ 364 (501)
+|++..+..... ....... ....+........+......+.++|||++|+++. + ..|..|++...+.....
T Consensus 219 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~ 298 (365)
T d1jofa_ 219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ 298 (365)
T ss_dssp EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred EEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeE
Confidence 999976543210 0000000 0000000001112234567889999999998752 2 23777777653332222
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcC-CCcEEEEE-eCCCeEEEEecCCC
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG-SYSNLLRIFSHGVG 416 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~-~~dg~i~iwd~~~~ 416 (501)
......... .... ..++++| +|++|+++ ..++.|.+|+++..
T Consensus 299 ~~~~~~~~~-------G~~p---~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 299 LFLSPTPTS-------GGHS---NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECSSC-------CTTC---CCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eEeeEEEcC-------CCCc---cEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 111110000 0000 5799998 78987666 56799999998644
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.26 E-value=4.1e-09 Score=93.82 Aligned_cols=239 Identities=11% Similarity=0.103 Sum_probs=148.6
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
.+..++++|||+++++...+++|..|+..+.. ..+....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-----------------------------~~~~~~~------------ 67 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-----------------------------QIHATVE------------ 67 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-----------------------------EEEEECS------------
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-----------------------------EEEEcCC------------
Confidence 47789999999999998889988888755321 1223333
Q ss_pred cceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccC
Q 010801 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (501)
..+.+++|. ++|+++++...++.+..|+.........
T Consensus 68 ~~~~gla~~--~dG~l~v~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 104 (302)
T d2p4oa1 68 GKVSGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTVE----------------------------------------- 104 (302)
T ss_dssp SEEEEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCEE-----------------------------------------
T ss_pred CCcceEEEc--CCCCeEEEecCCceEEEEEeccccccee-----------------------------------------
Confidence 668999997 7899888888888888877654321100
Q ss_pred cceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeec--CCCCCCCcccce
Q 010801 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLTEVI 270 (501)
Q Consensus 194 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~v 270 (501)
.+.. .........+++.++++++++. .++.+..++.......+..... ............
T Consensus 105 ---------------~~~~--~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T d2p4oa1 105 ---------------TLLT--LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 167 (302)
T ss_dssp ---------------EEEE--CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ---------------eccc--cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence 0000 2334557889999999888877 7888888887733222211111 011112223345
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCc
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~ 349 (501)
..+.+..+ .++++.+..+.|..++......... ...+.. ......+++.++|++.++.. ++.
T Consensus 168 ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~--------------~~~pdgia~d~dG~l~va~~~~~~ 230 (302)
T d2p4oa1 168 NGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKPGE-PEIFVE--------------QTNIDDFAFDVEGNLYGATHIYNS 230 (302)
T ss_dssp EEEEEETT--EEEEEETTTTEEEEEEBCTTSCBCC-CEEEEE--------------SCCCSSEEEBTTCCEEEECBTTCC
T ss_pred ccccccCC--ceeeecCCCCeEEeccccccccccc-cccccC--------------CCCCcceEECCCCCEEEEEcCCCc
Confidence 66766543 6777777889999998876532211 111111 24567899999999777664 488
Q ss_pred EEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEE---cCCCcEEEEEeCC
Q 010801 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYS 405 (501)
Q Consensus 350 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~s~~~d 405 (501)
|..++.. ++............ ..++++| ++|++.|..++..
T Consensus 231 V~~i~p~--G~~~~~~~~~~~~~-------------~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 231 VVRIAPD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEECTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEECCC--CCEEEEEecCCCCC-------------CceEEEEcCCCCCCCEEEEECCC
Confidence 8888764 44433333222211 0168999 6788877766543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=1.4e-08 Score=89.02 Aligned_cols=160 Identities=11% Similarity=0.141 Sum_probs=110.6
Q ss_pred cccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
.......+++.++|.++++. ..+.+.+++.+ +..+..+. ...+......+++.+++ +++++....+.|++|
T Consensus 112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g-----~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~ 183 (279)
T d1q7fa_ 112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVF 183 (279)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEE
T ss_pred cccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccc-----ccccccccceeeeccce-eEEeeeccccceeee
Confidence 34456788899999888887 77888888876 33343321 23455667889999998 888888889999999
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeeccccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~ 373 (501)
|..... . ..+.. .+.......+++.|+|+++++-. . ..|.+|+. +++.+..+........
T Consensus 184 d~~G~~-~----~~~g~-----------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~--~G~~~~~~~~~~~~~~ 245 (279)
T d1q7fa_ 184 NYEGQY-L----RQIGG-----------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ--DGQLISALESKVKHAQ 245 (279)
T ss_dssp ETTCCE-E----EEESC-----------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT--TSCEEEEEEESSCCSC
T ss_pred ecCCce-e----eeecc-----------cccccCCcccccccCCeEEEEECCCCcEEEEECC--CCCEEEEEeCCCCCCC
Confidence 975432 1 22211 11123567899999999777643 2 57999985 3777777654332110
Q ss_pred cccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q 010801 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (501)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 416 (501)
...+++.|||.+++ .+.+.+|++|.....
T Consensus 246 -------------p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 246 -------------CFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp -------------EEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred -------------EeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 16899999997655 557899999998754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.5e-08 Score=88.41 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=103.2
Q ss_pred CcccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeE-
Q 010801 216 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV- 292 (501)
Q Consensus 216 ~~~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i- 292 (501)
.+........|+|+|+.++.. .++...++........... ............+++++...+++...+|..
T Consensus 80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 152 (269)
T d2hqsa1 80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 152 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-------CCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred eeecccccceecCCCCeeeEeeecCCccceeeccccccccee-------eeeccccccccccccccccceecccccCCce
Confidence 445667788999999998874 4444443333312221111 222334445566777773455555556654
Q ss_pred -EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-C-CcEEEEEeeCCCCceeEeeccc
Q 010801 293 -RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHE 369 (501)
Q Consensus 293 -~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~ 369 (501)
.+.++..+... .. . .+........|+|+++.++..+ + +...+|............. ..
T Consensus 153 i~~~~~~~~~~~----~~-~-------------~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 213 (269)
T d2hqsa1 153 VYKVNINGGAPQ----RI-T-------------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-ST 213 (269)
T ss_dssp EEEEETTSSCCE----EC-C-------------CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CS
T ss_pred Eeeeecccccce----ee-e-------------cccccccccccccccceeEEEeecCCceeeeEeecccccceEee-cC
Confidence 44455443221 11 1 1134567789999999988653 3 6666666554333333332 22
Q ss_pred cccccccccCCCCCcceeeEEEEcCCCcEEEEEeC---CCeEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
... ....|||||+.|+-.+. ...|++++++.+. ...+......+...+++|
T Consensus 214 ~~~---------------~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~--~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 214 FLD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp SSC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSCC--EEECCCSSSEEEEEEECC
T ss_pred ccc---------------cceEECCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEEeCCCCcEEeEEeCC
Confidence 222 57899999999875543 3468899998653 245555566666677776
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.16 E-value=9.4e-09 Score=89.15 Aligned_cols=244 Identities=10% Similarity=0.038 Sum_probs=147.7
Q ss_pred CCccccccceEEEEEccCCCEEEEE-ecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 26 DEELQDVDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 26 ~~~~~h~~~v~~v~~s~~g~~latg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
...+.+.-....|+++++|++.++. ...+.+..++..+... ......+.
T Consensus 7 ~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~--------------------------~~~~~~~~---- 56 (260)
T d1rwia_ 7 FTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--------------------------TVLPFNGL---- 56 (260)
T ss_dssp CCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE--------------------------EECCCCSC----
T ss_pred cccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE--------------------------EEeccCCc----
Confidence 4445566678999999999966554 4556777666443211 11111211
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcc
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (501)
.....|++. +++..+++....+.+++++-.++.....
T Consensus 57 ---------~~p~gvav~--~~g~i~v~d~~~~~i~~~~~~~~~~~~~-------------------------------- 93 (260)
T d1rwia_ 57 ---------YQPQGLAVD--GAGTVYVTDFNNRVVTLAAGSNNQTVLP-------------------------------- 93 (260)
T ss_dssp ---------CSCCCEEEC--TTCCEEEEETTTEEEEECTTCSCCEECC--------------------------------
T ss_pred ---------cCceEEEEc--CCCCEEEeeeeeceeeeeeeccceeeee--------------------------------
Confidence 235677886 6777777666666666655433321110
Q ss_pred cccceeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCC
Q 010801 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (501)
Q Consensus 185 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (501)
.........+++.++++++++- .+..+..++......... ..
T Consensus 94 ------------------------------~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~-------~~ 136 (260)
T d1rwia_ 94 ------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-------PF 136 (260)
T ss_dssp ------------------------------CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC-------CC
T ss_pred ------------------------------eeeeeecccccccccceeEeeccccccccccccccceeeee-------ee
Confidence 1222456789999999888776 777788877763222111 01
Q ss_pred CCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEE
Q 010801 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (501)
Q Consensus 264 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 343 (501)
.+ ......++++|++ +++++...++.|..+|....... .+.. ..-.....+++.++|++++
T Consensus 137 ~~-~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~-----~~~~------------~~~~~p~gi~~d~~g~l~v 197 (260)
T d1rwia_ 137 TG-LNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV-----VLPF------------TDITAPWGIAVDEAGTVYV 197 (260)
T ss_dssp CS-CCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEE-----ECCC------------SSCCSEEEEEECTTCCEEE
T ss_pred cc-cCCcceeeecCCC-CEeeeccccccccccccccceee-----eeec------------cccCCCccceeeeeeeeee
Confidence 11 2344789999998 88888888899999997764321 1111 0123467899999998877
Q ss_pred EEcC-CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecC
Q 010801 344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (501)
Q Consensus 344 ~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 414 (501)
+... +.|..++.. +.....+....... ...++++++|.++++-..+++|+.++..
T Consensus 198 sd~~~~~i~~~~~~--~~~~~~~~~~~~~~--------------P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 198 TEHNTNQVVKLLAG--STTSTVLPFTGLNT--------------PLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EETTTTEEEEECTT--CSCCEECCCCSCCC--------------EEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred eecCCCEEEEEeCC--CCeEEEEccCCCCC--------------eEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 7654 778777754 33322222111111 1689999999988887777877766543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.13 E-value=1.4e-08 Score=92.83 Aligned_cols=284 Identities=9% Similarity=-0.043 Sum_probs=147.6
Q ss_pred ccceeccCcceEEEeccCcee-eeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCC
Q 010801 186 YHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264 (501)
Q Consensus 186 ~~~~~~~~~~i~~w~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (501)
..|.+++.+.|....++.... ...+..........+..|+|+|+++.|.++..+.+..|.+............
T Consensus 6 ~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~------ 79 (365)
T d1jofa_ 6 MIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH------ 79 (365)
T ss_dssp EEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE------
T ss_pred EEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee------
Confidence 344444455555544443321 1222222133445566799999999998885567888887744443332111
Q ss_pred CcccceEEEEEecCCCcEEEEEe---CCCeEEEEEccCCcccccccceeecccccCC----CcceeeecccceeEEEEee
Q 010801 265 DLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHG----SKSFFTEIIASISDIKFAN 337 (501)
Q Consensus 265 ~~~~~v~~v~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~i~~~~~sp 337 (501)
........+.+++++ +.+.... ..+.|..+.+....... ..+.. ..... ...........+.++.|+|
T Consensus 80 ~~~~~p~~v~~~~~~-~~~~v~~a~~~~~~v~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~q~~~h~h~v~~sP 154 (365)
T d1jofa_ 80 PIGGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYG---NVFSV-SETGKLEKNVQNYEYQENTGIHGMVFDP 154 (365)
T ss_dssp ECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEE---EEEEE-CTTCCEEEEEEEEECCTTCCEEEEEECT
T ss_pred cCCCCcEEEEECCCC-CEEEEEEecCCCCEEEEeEccCCCCcc---eeEee-eecceecCcccCcccCCCCcceEEEECC
Confidence 111234567788888 6432222 24556555443211000 01100 00000 0000011123578999999
Q ss_pred CCCEEEEEcC--CcEEEEEeeCCCCceeE--eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEe-CCCeEEEEe
Q 010801 338 DGQHLLSRDY--MNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFS 412 (501)
Q Consensus 338 ~~~~l~~~~~--~~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~iwd 412 (501)
||+++++++. ..|.+|+....+..... ....... . ....++|+|+++++.... .++.|.+|+
T Consensus 155 dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g----------~---gPr~i~f~pdg~~~yv~~e~~~~V~v~~ 221 (365)
T d1jofa_ 155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG----------D---HPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT----------C---CEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC----------C---ceEEEEECCCCceEEEeccCCCEEEEEE
Confidence 9999988753 78889887653333211 1111100 0 116899999999886555 589999999
Q ss_pred cCCCCcceE-EEe-----------------cccCcccceeeccCCccccCccceeeeeccc--c--e-ee--ccccC--C
Q 010801 413 HGVGSAGGI-TVE-----------------AGKNENRKPILQAAPRARRSSLSNLTRGLYR--Q--A-HE--NSSSG--H 465 (501)
Q Consensus 413 ~~~~~~~~~-~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~--~--~-~i--w~~~~--~ 465 (501)
++.+..... ... .+......+.++| +|++ |..+.+. . . .+ |..+. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp--dG~~-----lyvsnr~~~~~~~~~i~~~~~~~~g~ 294 (365)
T d1jofa_ 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF--SGKY-----MFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT--TSSE-----EEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred ecCCCceEEEEeeeeccccccccccccccccccCCccceEECC--CCCE-----EEEEcccCCCccceEEEEEEecCCCc
Confidence 976543211 111 0111233566776 7776 5554321 1 1 12 22221 1
Q ss_pred cccc------cccCCCeEEEEEcc-CCCEEEEee--CCeEEEEe
Q 010801 466 HELS------YNLSSKLLHLAWHP-TTNLIACAN--GNSLFFHY 500 (501)
Q Consensus 466 ~~~~------~~~~~~i~~~~~sp-~~~~la~~~--~~~~~i~~ 500 (501)
+... ........+++++| +|++|+++. ++.+.+|.
T Consensus 295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence 1110 11223456799998 799888886 56788885
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.08 E-value=4.2e-08 Score=87.03 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=127.5
Q ss_pred ceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc
Q 010801 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (501)
Q Consensus 115 ~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (501)
.+..+++. +||+++++...+++|..|+..... ...
T Consensus 29 ~~e~iAv~--pdG~l~vt~~~~~~I~~i~p~g~~-~~~------------------------------------------ 63 (302)
T d2p4oa1 29 FLENLASA--PDGTIFVTNHEVGEIVSITPDGNQ-QIH------------------------------------------ 63 (302)
T ss_dssp CEEEEEEC--TTSCEEEEETTTTEEEEECTTCCE-EEE------------------------------------------
T ss_pred CcCCEEEC--CCCCEEEEeCCCCEEEEEeCCCCE-EEE------------------------------------------
Confidence 36788987 899999888889988888865432 111
Q ss_pred ceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEE
Q 010801 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (501)
Q Consensus 195 ~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v 273 (501)
......+.+++|.++|+++++. .++.+..++..........+. ..........+
T Consensus 64 --------------------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~n~i 118 (302)
T d2p4oa1 64 --------------------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL-----TLPDAIFLNGI 118 (302)
T ss_dssp --------------------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE-----ECTTCSCEEEE
T ss_pred --------------------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc-----ccCCcccccee
Confidence 1234568899999999998888 888888887653332222110 11234557899
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-c-CCcEE
Q 010801 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLK 351 (501)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~-~~~i~ 351 (501)
++.+++ +++++.+.++.+..+|...+... .+....... . ............+.+. +..+..+ + .+.|+
T Consensus 119 ~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~-~-~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~ 188 (302)
T d2p4oa1 119 TPLSDT-QYLTADSYRGAIWLIDVVQPSGS-----IWLEHPMLA-R-SNSESVFPAANGLKRF--GNFLYVSNTEKMLLL 188 (302)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTTTEEE-----EEEECGGGS-C-SSTTCCSCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEccCC-CEEeeccccccceeeeccCCcce-----eEecCCccc-e-eeccCccccccccccc--CCceeeecCCCCeEE
Confidence 999998 99888888999999988776432 111100000 0 0000111234455554 4555544 3 38888
Q ss_pred EEEeeCCCCce--eEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCC
Q 010801 352 LWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 352 lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 415 (501)
.++........ ..+...... ..++++++|+++++...++.|..++.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~p----------------dgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 189 RIPVDSTDKPGEPEIFVEQTNI----------------DDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp EEEBCTTSCBCCCEEEEESCCC----------------SSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred eccccccccccccccccCCCCC----------------cceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 88876422211 111111111 4799999999888888889998887653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.05 E-value=7.8e-08 Score=85.55 Aligned_cols=159 Identities=10% Similarity=0.093 Sum_probs=94.8
Q ss_pred eEEEEecCCCCEEEEE-c---------------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC----
Q 010801 221 INSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---- 280 (501)
Q Consensus 221 v~~l~~~~~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~---- 280 (501)
.+.+++.++|.+.++- . .+.|..++.+ +..... ...-...+.++|+|++.
T Consensus 119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~~--------~~~~~~pNGi~~~~d~d~~~~ 188 (314)
T d1pjxa_ 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQV--------DTAFQFPNGIAVRHMNDGRPY 188 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEE--------EEEESSEEEEEEEECTTSCEE
T ss_pred CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec--CceeEe--------eCCcceeeeeEECCCCCccee
Confidence 4667888888877763 1 1234444433 222221 11222347889998862
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 359 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~ 359 (501)
.++++-+..+.|..||+........ .+.+.... ..+......+++.++|++.++.. .+.|.+||.+. +
T Consensus 189 ~lyv~d~~~~~i~~~d~~~~g~~~~-~~~~~~~~---------~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~-g 257 (314)
T d1pjxa_ 189 QLIVAETPTKKLWSYDIKGPAKIEN-KKVWGHIP---------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-G 257 (314)
T ss_dssp EEEEEETTTTEEEEEEEEETTEEEE-EEEEEECC---------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-B
T ss_pred EEEEEeecccceEEeeccCccccce-eeEEEEcc---------ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC-C
Confidence 1445556788999998764322211 01111100 00112356899999999877664 48999999864 5
Q ss_pred CceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEEeCCCeEEEEecCC
Q 010801 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGV 415 (501)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 415 (501)
+.+..+....... ++++|.||++ ++++.+.+|.|...++..
T Consensus 258 ~~~~~i~~p~~~~---------------t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 258 QPKMRIRCPFEKP---------------SNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCSEEEECSSSCE---------------EEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEEECCCCCE---------------EEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 5666665443322 6899999987 556677789888888754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=5.6e-08 Score=91.56 Aligned_cols=160 Identities=12% Similarity=0.149 Sum_probs=94.3
Q ss_pred EEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhcccccccccee
Q 010801 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (501)
Q Consensus 38 v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (501)
..|.+++.++.. ..+|.|.+||+.+++.. ..+..+. |. .-.+.
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~---------------------------~l~~~~~--~~-------~~~~~ 64 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------VLIEGKK--IE-------SLRAI 64 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------------EEECTTT--TT-------TTTCS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEE---------------------------EEEcCcc--cc-------ccccc
Confidence 368888887754 46789999999987642 1111111 00 03456
Q ss_pred EEEEeecCCCCEEEEee---------CCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccc
Q 010801 118 RVRWCAAPNGSMFILST---------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s---------~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (501)
...|+ ||+++++.+. ..+.+.++|+.++....+...
T Consensus 65 ~~~~S--pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~--------------------------------- 109 (465)
T d1xfda1 65 RYEIS--PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP--------------------------------- 109 (465)
T ss_dssp EEEEC--TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT---------------------------------
T ss_pred eeEEC--CCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc---------------------------------
Confidence 66776 8999888764 245667777776654332210
Q ss_pred eeccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeec-CCCC-CCCc
Q 010801 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM-KPSN-MDDL 266 (501)
Q Consensus 189 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~-~~~~ 266 (501)
......+....|||||+.+|-..++.|.+.+... +...++..- .... +.+.
T Consensus 110 --------------------------~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~-~~~~~lt~~g~~~~i~nG~ 162 (465)
T d1xfda1 110 --------------------------EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGVIYNGL 162 (465)
T ss_dssp --------------------------TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTTEEEEE
T ss_pred --------------------------cCCccccceeeeccCCceEEEEecceEEEEecCC-CceEEEecccCcceeeccc
Confidence 1223345557899999999988788899888873 333333211 0000 0010
Q ss_pred c---------cceEEEEEecCCCcEEEEEeC-CCeEEEEEc
Q 010801 267 T---------EVITSAEFHPIYCNLLAYSSS-RGFVRLVDM 297 (501)
Q Consensus 267 ~---------~~v~~v~~~p~~~~~l~~~~~-dg~i~~wd~ 297 (501)
. ..-.++-|+||| +.||.... +..|..+.+
T Consensus 163 ~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 163 SDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp CCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEE
T ss_pred cchhhhhhhccccceEEECCCC-CeEEEEEecccccceeec
Confidence 0 112577899999 88887653 344555543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=2.1e-07 Score=80.85 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=122.0
Q ss_pred ccceEEEEecCCCCEEEEE--cC--CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CCeE
Q 010801 218 DFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFV 292 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i 292 (501)
...+.+-+|||||+.||.. .. ..+.+.+...... .. +..+........|+|+| ..++.... ++..
T Consensus 38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~spdg-~~i~~~~~~~~~~ 107 (269)
T d2hqsa1 38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQ--------VASFPRHNGAPAFSPDG-SKLAFALSKTGSL 107 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EE--------EECCSSCEEEEEECTTS-SEEEEEECTTSSC
T ss_pred CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eE--------EeeeecccccceecCCC-CeeeEeeecCCcc
Confidence 4567788999999999875 33 3466666663332 22 23456677889999999 66655443 4444
Q ss_pred EEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeecccc
Q 010801 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEH 370 (501)
Q Consensus 293 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~ 370 (501)
.++......... ..... .........++++++.+.... ++...+|...........+.....
T Consensus 108 ~~~~~~~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 171 (269)
T d2hqsa1 108 NLYVMDLASGQI--RQVTD--------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS 171 (269)
T ss_dssp EEEEEETTTCCE--EECCC--------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred ceeecccccccc--eeeee--------------ccccccccccccccccceecccccCCceEeeeecccccceeeecccc
Confidence 333332221110 01111 123345566777777665442 354444444332333333333322
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCC-CeEEEEecCCCCcceEEEecccCcccceeeccCCccccCcccee
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 449 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 449 (501)
.. ....|+|+++.++..+.+ +...+|........ ..+..+........|+| +|+. |
T Consensus 172 ~~---------------~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SP--DG~~-----i 228 (269)
T d2hqsa1 172 QN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAP--NGTM-----V 228 (269)
T ss_dssp EE---------------EEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECT--TSSE-----E
T ss_pred cc---------------cccccccccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECC--CCCE-----E
Confidence 21 568999999998876654 44445444433222 34444555666778998 7877 6
Q ss_pred eeecccce--eec--cccC-CcccccccCCCeEEEEEccC
Q 010801 450 TRGLYRQA--HEN--SSSG-HHELSYNLSSKLLHLAWHPT 484 (501)
Q Consensus 450 ~~~~~~~~--~iw--~~~~-~~~~~~~~~~~i~~~~~sp~ 484 (501)
+..+..+. .+| ..+. ....+......+...+|||-
T Consensus 229 ~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 229 IYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence 65554433 555 3333 33344555667788899983
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.92 E-value=2.4e-06 Score=74.40 Aligned_cols=153 Identities=8% Similarity=0.083 Sum_probs=96.0
Q ss_pred EEEEecCC-CCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 010801 222 NSISNNSD-CETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (501)
Q Consensus 222 ~~l~~~~~-~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 298 (501)
..+++.++ +..+++. .++.|..++.. +. ....+ -.........+++.+++ +++++....+.+.+++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~-~~~~~------~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~ 143 (279)
T d1q7fa_ 73 NRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ-FVRKF------GATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN 143 (279)
T ss_dssp EEEEEETTTTEEEEEECGGGCEEEEECTT-SC-EEEEE------CTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred ccccccccccccceeccCCcccccccccc-cc-ceeec------CCCcccccceeccccCC-cEEEEeeccceeeEeccC
Confidence 34555444 3344443 56677777765 33 33322 12234456889999998 888887778888888764
Q ss_pred CCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEeeccccccccccc
Q 010801 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
.. .. ..+.. ..+......+++.++++.+++... +.|++||.. ++.+.++.......
T Consensus 144 g~-~~----~~~g~-----------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~~g~~g~~~----- 200 (279)
T d1q7fa_ 144 GN-VL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGEGITN----- 200 (279)
T ss_dssp SC-EE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCTTTSC-----
T ss_pred Cc-ee----ecccc-----------cccccccceeeeccceeEEeeeccccceeeeecC--Cceeeeeccccccc-----
Confidence 32 21 22221 112346788899999987777654 899999974 67776663221110
Q ss_pred cCCCCCcceeeEEEEcCCCcEEEEEeC-CCeEEEEecC
Q 010801 378 LYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 414 (501)
Q Consensus 378 ~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 414 (501)
. ...++++++|+++++-.. ++.|.+|+.+
T Consensus 201 -----~---P~giavD~~G~i~Vad~~~~~~v~~f~~~ 230 (279)
T d1q7fa_ 201 -----Y---PIGVGINSNGEILIADNHNNFNLTIFTQD 230 (279)
T ss_dssp -----S---EEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred -----C---CcccccccCCeEEEEECCCCcEEEEECCC
Confidence 0 168999999998877654 4579999843
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.90 E-value=3.4e-07 Score=79.04 Aligned_cols=230 Identities=6% Similarity=-0.041 Sum_probs=134.8
Q ss_pred ccceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEE
Q 010801 218 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~w 295 (501)
......+++.++|..+++. ..+.+..++......... ...+. .....+++++++ +++++....+.++++
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~~-~~p~gvav~~~g-~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNGL-YQPQGLAVDGAG-TVYVTDFNNRVVTLA 83 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------CCCSC-CSCCCEEECTTC-CEEEEETTTEEEEEC
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------ccCCc-cCceEEEEcCCC-CEEEeeeeeceeeee
Confidence 3456799999999987775 567788777663332221 12222 234788999998 877776666666665
Q ss_pred EccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeEee--cccccc
Q 010801 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK--IHEHLR 372 (501)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~~~--~~~~~~ 372 (501)
+..+.... ..... ......+++.++++++++-.. ..+..++.. +.....+. +...+
T Consensus 84 ~~~~~~~~----~~~~~--------------~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~p- 142 (260)
T d1rwia_ 84 AGSNNQTV----LPFDG--------------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAG--SKTQTVLPFTGLNDP- 142 (260)
T ss_dssp TTCSCCEE----CCCCS--------------CCSEEEEEECTTCCEEEEEGGGTEEEEECTT--CSSCEECCCCSCCSC-
T ss_pred eeccceee----eeeee--------------eeecccccccccceeEeeccccccccccccc--cceeeeeeecccCCc-
Confidence 54433211 11111 135688999999987776543 666666654 33322221 11221
Q ss_pred ccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeeccCCccccCccceeeee
Q 010801 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG 452 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 452 (501)
..++++++++++++...++.|..++.+..... ............+++.+ ++.+ .++.
T Consensus 143 ---------------~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~--~g~l-----~vsd 199 (260)
T d1rwia_ 143 ---------------DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDE--AGTV-----YVTE 199 (260)
T ss_dssp ---------------CEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECT--TCCE-----EEEE
T ss_pred ---------------ceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeee--eeee-----eeee
Confidence 58999999999888888899999998755322 21123334445667765 5555 5555
Q ss_pred cccce-eeccccCCcccccc--cCCCeEEEEEccCCCEEEEee-CCeEEEEe
Q 010801 453 LYRQA-HENSSSGHHELSYN--LSSKLLHLAWHPTTNLIACAN-GNSLFFHY 500 (501)
Q Consensus 453 ~~~~~-~iw~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~-~~~~~i~~ 500 (501)
...+. ..+..+........ .-.....|+++++|+++++-. .+.|..++
T Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 200 HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp TTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred cCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 55554 33433322222221 123567999999998766644 44565553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=6.1e-06 Score=73.19 Aligned_cols=155 Identities=6% Similarity=-0.011 Sum_probs=89.3
Q ss_pred cceEEEEecCCCCEEEEE-c------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEE-EEEeCCC
Q 010801 219 FNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRG 290 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~~~~~dg 290 (501)
.....+++.++|++.++. . .+.+..++.+ .+..... ...-...+.++|+|++ +.| ++-+..+
T Consensus 130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~--------~~~~~~pnGia~s~dg-~~lyvad~~~~ 199 (319)
T d2dg1a1 130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI--------IQNISVANGIALSTDE-KVLWVTETTAN 199 (319)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE--------EEEESSEEEEEECTTS-SEEEEEEGGGT
T ss_pred cCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEE--------eeccceeeeeeecccc-ceEEEecccCC
Confidence 356788999999877764 2 1234444444 2222211 1112345789999998 654 5556689
Q ss_pred eEEEEEccCCccccccc-ceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCceeEeecc
Q 010801 291 FVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 368 (501)
Q Consensus 291 ~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~ 368 (501)
.|..||+.......... ..... . .........+++.++|++.++.. .+.|.+||.. ++.+.++...
T Consensus 200 ~I~~~d~~~~g~~~~~~~~~~~~-~---------~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~--G~~l~~i~~P 267 (319)
T d2dg1a1 200 RLHRIALEDDGVTIQPFGATIPY-Y---------FTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIP 267 (319)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEE-E---------CCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT--SCEEEEEECT
T ss_pred ceEEEEEcCCCceeccccceeee-c---------cCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC--CcEEEEEeCC
Confidence 99999986532111000 00000 0 00012356899999999777654 4999999963 8888877644
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeC
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 404 (501)
..... ....+++++|.+++..+++...
T Consensus 268 ~~~~~---------~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 268 GRDEG---------HMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TGGGT---------CSCBCCEEEECTTSCEEEEEEE
T ss_pred CcCCC---------cCceeeeEEEeCCCCEEEEEcC
Confidence 32110 0001168999998776665443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.78 E-value=3e-05 Score=68.61 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=95.1
Q ss_pred ccceEEEEecCCCCEEEEE-cC----CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC----
Q 010801 218 DFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---- 288 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---- 288 (501)
......+++.++|+++++. .+ +.+...+.. ......... -..-......+++.++| ++.++...
T Consensus 81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~-~~~~~~~~~-----~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~ 153 (319)
T d2dg1a1 81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLSTAYCIDDMVFDSKG-GFYFTDFRGYST 153 (319)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSSCCCEEEEEECTTS-CEEEEECCCBTT
T ss_pred CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC-Cceeeeecc-----CCCcccCCcceeEEecc-ceeecccccccc
Confidence 3456789999999988875 32 234444444 222222110 11122356789999999 86665432
Q ss_pred --CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeE
Q 010801 289 --RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT 364 (501)
Q Consensus 289 --dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~ 364 (501)
.+.+..++...+... .+... -...+.++|+||++.|..++ .+.|+.|++..++.....
T Consensus 154 ~~~g~v~~~~~dg~~~~----~~~~~--------------~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~ 215 (319)
T d2dg1a1 154 NPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP 215 (319)
T ss_dssp BCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred cCcceeEEEecccceeE----EEeec--------------cceeeeeeeccccceEEEecccCCceEEEEEcCCCceecc
Confidence 123444443332111 11111 23457899999999776653 389999998754444332
Q ss_pred eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCc
Q 010801 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (501)
......... ......-.+++.++|++.++....+.|.+|+- .++.
T Consensus 216 ~~~~~~~~~--------~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~ 260 (319)
T d2dg1a1 216 FGATIPYYF--------TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYP 260 (319)
T ss_dssp EEEEEEEEC--------CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCE
T ss_pred ccceeeecc--------CCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcE
Confidence 221100000 00000147999999999888888999999995 4533
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.75 E-value=1.1e-05 Score=71.26 Aligned_cols=181 Identities=9% Similarity=0.026 Sum_probs=106.3
Q ss_pred ceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCCCc-ccceEEEEEecCCCcEEEEEeC---------
Q 010801 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSS--------- 288 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~--------- 288 (501)
....++|.+++..++++ ..+.|...+.+ +... ..... ...+. -...+.+++.++| ++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~-g~~~-~~~~~---~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~ 145 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFE-EIAKK---DSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYT 145 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETT-SCEE-ECCSB---CTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCC
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCC-CcEE-EEEec---cccccccCCCcEEEECCCC-CEEEecCccCccccccc
Confidence 45679999999888877 66778888877 3322 11100 01111 1235788999998 87776422
Q ss_pred ------CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCC----EEEEE-c-CCcEEEEEee
Q 010801 289 ------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ----HLLSR-D-YMNLKLWDIR 356 (501)
Q Consensus 289 ------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~----~l~~~-~-~~~i~lwd~~ 356 (501)
.|.|..++.. ++.. ..... -..-+.++|+|++. .|..+ + .+.|+.||+.
T Consensus 146 ~~~~~~~G~v~~~~~d-g~~~----~~~~~--------------~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~ 206 (314)
T d1pjxa_ 146 RSMQEKFGSIYCFTTD-GQMI----QVDTA--------------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp BTTSSSCEEEEEECTT-SCEE----EEEEE--------------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred ceeccCCceEEEEeec-Ccee----EeeCC--------------cceeeeeEECCCCCcceeEEEEEeecccceEEeecc
Confidence 1233333322 1111 11111 22346889999875 45544 3 3889999887
Q ss_pred CCCCceeE--eeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCccccee
Q 010801 357 MDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI 434 (501)
Q Consensus 357 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 434 (501)
.++..... +....... ....-.+++.++|++.++....+.|.+||.+.+. ....+........+++
T Consensus 207 ~~g~~~~~~~~~~~~~~~-----------~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~-~~~~i~~p~~~~t~~a 274 (314)
T d1pjxa_ 207 GPAKIENKKVWGHIPGTH-----------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLH 274 (314)
T ss_dssp ETTEEEEEEEEEECCCCS-----------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEEEEE
T ss_pred CccccceeeEEEEccccc-----------cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE-EEEEEECCCCCEEEEE
Confidence 53332211 11111000 0001479999999998888888999999987664 3456666666777889
Q ss_pred ecc
Q 010801 435 LQA 437 (501)
Q Consensus 435 ~~~ 437 (501)
|.+
T Consensus 275 fg~ 277 (314)
T d1pjxa_ 275 FKP 277 (314)
T ss_dssp ECT
T ss_pred EeC
Confidence 976
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.72 E-value=2e-06 Score=74.83 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=49.6
Q ss_pred EEccC--CCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccce
Q 010801 39 EFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (501)
Q Consensus 39 ~~s~~--g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (501)
..||| |+.||..+ +|.|.+.|+.+++. ..+..+. +.+
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~----------------------------~~Lt~~~------------~~~ 43 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST----------------------------RKIVSNL------------GVI 43 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCE----------------------------EEEECSS------------SEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCE----------------------------EEEecCC------------Ccc
Confidence 35788 99998765 56788889987754 3455555 667
Q ss_pred eEEEEeecCCCCEEEEeeC-C-----CeEEEEeccccceeee
Q 010801 117 NRVRWCAAPNGSMFILSTN-D-----KTIKLWKVRDQKVKKI 152 (501)
Q Consensus 117 ~~v~~~~~~~~~~l~s~s~-d-----~~i~lw~~~~~~~~~~ 152 (501)
...+|| |||+.|+.... + ..|.+++..+++...+
T Consensus 44 ~~p~~S--PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l 83 (281)
T d1k32a2 44 NNARFF--PDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI 83 (281)
T ss_dssp EEEEEC--TTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred cCEEEC--CCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence 888998 89999987642 2 2366667777665443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=9e-05 Score=69.09 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=54.6
Q ss_pred ceEEEEEccCCCEEEEEe---------cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcch
Q 010801 34 IVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (501)
.+....|||||++|+.+. ..+.+.|+|+.+++.. .+.......
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-------------------------~l~~~~~~~--- 113 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------SLDPPEVSN--- 113 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------ECCCTTCCS---
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-------------------------eccCccCCc---
Confidence 567788999999988764 3467889999877541 111111122
Q ss_pred hhccccccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeee
Q 010801 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK 153 (501)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~ 153 (501)
..+....|| |+|+.+|... ++.|.+.+..++....+.
T Consensus 114 ---------~~l~~~~wS--PDG~~iafv~-~~nl~~~~~~~~~~~~lt 150 (465)
T d1xfda1 114 ---------AKLQYAGWG--PKGQQLIFIF-ENNIYYCAHVGKQAIRVV 150 (465)
T ss_dssp ---------CCCSBCCBC--SSTTCEEEEE-TTEEEEESSSSSCCEEEE
T ss_pred ---------cccceeeec--cCCceEEEEe-cceEEEEecCCCceEEEe
Confidence 446667897 8999998876 567888888776655443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.45 E-value=0.00021 Score=62.16 Aligned_cols=226 Identities=10% Similarity=0.034 Sum_probs=135.6
Q ss_pred EEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccccc
Q 010801 37 AIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (501)
Q Consensus 37 ~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (501)
...|++....|...+ ..++|..||..+++. ..+. .. ..
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~----------------------------~~~~-~~------------~~ 60 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP------------FM 60 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS------------SC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeE----------------------------EEEE-CC------------CC
Confidence 456877554444443 667888899887643 1111 11 45
Q ss_pred eeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCcc
Q 010801 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (501)
Q Consensus 116 V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (501)
+.++++. +++.+++ ++.+ .+.++|..+++.........
T Consensus 61 ~~~i~~~--~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~-------------------------------------- 98 (295)
T d2ghsa1 61 GSALAKI--SDSKQLI-ASDD-GLFLRDTATGVLTLHAELES-------------------------------------- 98 (295)
T ss_dssp EEEEEEE--ETTEEEE-EETT-EEEEEETTTCCEEEEECSST--------------------------------------
T ss_pred cEEEEEe--cCCCEEE-EEeC-ccEEeecccceeeEEeeeec--------------------------------------
Confidence 7788886 5665554 4555 48889998887654432110
Q ss_pred eEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c----CCeEEEEECCCCCeeeeeeecCCCCCCCcccce
Q 010801 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (501)
Q Consensus 196 i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (501)
......++.+.+.|+|++.++. . .+.-.+|.+. .++.... . ..-...
T Consensus 99 -------------------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~-------~-~~~~~~ 150 (295)
T d2ghsa1 99 -------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKL-------F-ADISIP 150 (295)
T ss_dssp -------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEE-------E-EEESSE
T ss_pred -------------------CCCcccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEE-------e-eccCCc
Confidence 1223457788899999887774 2 2345566665 3333322 1 112345
Q ss_pred EEEEEecCCCcEEEEEeCCCeEEEEEccCCcccc-cccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CC
Q 010801 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (501)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~ 348 (501)
..++|++++..++++-+..+.|..|++....... .....+.. +.+.......+++..+|++.++.- .+
T Consensus 151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~----------~~~~~g~pdG~~vD~~GnlWva~~~~g 220 (295)
T d2ghsa1 151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID----------STGIKGGMDGSVCDAEGHIWNARWGEG 220 (295)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec----------cCcccccccceEEcCCCCEEeeeeCCC
Confidence 7899999983355566668899999875432111 11111111 011134578899999998777653 48
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEc-CCCcEEE
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFA 400 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~ 400 (501)
.|..||.. ++.+..+....... ++++|- +|.+.|.
T Consensus 221 ~V~~~dp~--G~~~~~i~lP~~~~---------------T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 221 AVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLL 256 (295)
T ss_dssp EEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEE
T ss_pred ceEEecCC--CcEeeEecCCCCce---------------EEEEEeCCCCCEEE
Confidence 89999963 88888887654332 789996 5655444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.42 E-value=1.8e-05 Score=68.49 Aligned_cols=99 Identities=17% Similarity=0.058 Sum_probs=62.8
Q ss_pred ecCC--CCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-C-----CeEEEEEc
Q 010801 226 NNSD--CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-----GFVRLVDM 297 (501)
Q Consensus 226 ~~~~--~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-d-----g~i~~wd~ 297 (501)
.+|+ |+.++...++.|.+.|+. +++..+ +..+...+...+|+||| +.|+.... + ..|.+++.
T Consensus 6 ~sPdi~G~~v~f~~~~dl~~~d~~-~g~~~~--------Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~~ 75 (281)
T d1k32a2 6 LNPDIHGDRIIFVCCDDLWEHDLK-SGSTRK--------IVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNG 75 (281)
T ss_dssp EEEEEETTEEEEEETTEEEEEETT-TCCEEE--------EECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEET
T ss_pred cCCCCCCCEEEEEeCCcEEEEECC-CCCEEE--------EecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEEe
Confidence 4788 998887766778888998 444443 33455677899999999 87776542 2 23677777
Q ss_pred cCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE
Q 010801 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~ 345 (501)
.+++.. ++... .. .............|+|||+.|+..
T Consensus 76 ~~g~~~----~lt~~-~~------~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 76 ENGEIK----RITYF-SG------KSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp TTTEEE----ECCCC-CE------EEETTEECSEEEEECTTCCEEEEE
T ss_pred cCCceE----Eeeec-CC------CccCccccccccccCCCCCEEEEE
Confidence 766532 11111 00 000112345778899999998864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.41 E-value=0.00025 Score=61.64 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=108.9
Q ss_pred cceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC----CCeEEE
Q 010801 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~----dg~i~~ 294 (501)
..+.++++.++|.+++++.+ .+.++|..++ +.....+.. -......++.+.+.|+| ++.++... .+.-.+
T Consensus 59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg-~~~~l~~~~---~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l 132 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIASDD-GLFLRDTATG-VLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI 132 (295)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTC-CEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred CCcEEEEEecCCCEEEEEeC-ccEEeecccc-eeeEEeeee---cCCCcccceeeEECCCC-CEEEEeccccccccceeE
Confidence 35678888889877776554 5888998844 333222111 11223467899999999 76665432 234456
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cC-CcEEEEEeeCCCCc----eeEeecc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTP----VATFKIH 368 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~-~~i~lwd~~~~~~~----~~~~~~~ 368 (501)
|.+..++.. ..... -...+.++|+++++.+... +. +.|+.|++...... ...+...
T Consensus 133 ~~~~~g~~~----~~~~~--------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~ 194 (295)
T d2ghsa1 133 YHVAKGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS 194 (295)
T ss_dssp EEEETTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred eeecCCcEE----EEeec--------------cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc
Confidence 666555432 22222 2346789999999977655 33 88999987532111 1111111
Q ss_pred ccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
.... . ..-.+++..+|++.++.-..+.|..||-+ ++ +...+......+++++|--
T Consensus 195 ~~~~----------g--~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~-~~~~i~lP~~~~T~~~FGG 249 (295)
T d2ghsa1 195 TGIK----------G--GMDGSVCDAEGHIWNARWGEGAVDRYDTD-GN-HIARYEVPGKQTTCPAFIG 249 (295)
T ss_dssp TTSS----------S--EEEEEEECTTSCEEEEEETTTEEEEECTT-CC-EEEEEECSCSBEEEEEEES
T ss_pred Cccc----------c--cccceEEcCCCCEEeeeeCCCceEEecCC-Cc-EeeEecCCCCceEEEEEeC
Confidence 0000 0 01579999999988887788899999954 53 4455655555567777753
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.95 E-value=0.0039 Score=52.58 Aligned_cols=174 Identities=10% Similarity=-0.022 Sum_probs=97.7
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeC-CC--eEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVR 293 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg--~i~ 293 (501)
..+.++++..-+..|..+ ..+.|.+.+++ +.....+ .......+..++++|.. .+++.... .+ .|.
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~ 149 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVL-------FDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE 149 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecC-CceEEEE-------ecccccCCcEEEEeccc-CcEEEeecCCCCcEEE
Confidence 456788887656666554 67899999988 3332222 12223457899999987 55554432 22 344
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeE-eecccc
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT-FKIHEH 370 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~-~~~~~~ 370 (501)
--++...... .+... .-....++++.+.++.|...+ .+.|...++. +..... +.+...
T Consensus 150 r~~~dG~~~~----~i~~~-------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~--g~~~~~v~~~~~~ 210 (263)
T d1npea_ 150 TSHMDGTNRR----ILAQD-------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--QPGRRKVLEGLQY 210 (263)
T ss_dssp EEETTSCCCE----EEECT-------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEEEEECCCS
T ss_pred EecCCCCCce----eeeee-------------cccccceEEEeecCcEEEEEeCCCCEEEEEECC--CCCeEEEECCCCC
Confidence 4455433211 11111 013467899998888776654 3788888875 333332 333222
Q ss_pred ccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEecccCcccceeecc
Q 010801 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (501)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 437 (501)
+ .++++. ++.+..+-...+.|...|..+++......+........+++.+
T Consensus 211 P----------------~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 211 P----------------FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp E----------------EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred c----------------EEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 2 467775 4444455556788888898877544333333333444444433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.71 E-value=0.011 Score=52.32 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=89.7
Q ss_pred EEEec---CCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCC-CcEEEEEeCC-------
Q 010801 223 SISNN---SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSSR------- 289 (501)
Q Consensus 223 ~l~~~---~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d------- 289 (501)
.+++. +||++++.. .+.+|.+.|++ ..++.+++.++ ....+..+...++. ..+++..+++
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~-~fkt~kIi~iP------n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd 161 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVND 161 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECc-ceeeeEEEecC------CCCCCceeecccCCCeEEEEccCccccccCCC
Confidence 45554 489999886 78999999999 44555554322 22334555554432 1466665553
Q ss_pred -----------CeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcC---C-------
Q 010801 290 -----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---M------- 348 (501)
Q Consensus 290 -----------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~---~------- 348 (501)
+.+...|..+.+... ++.- ......+.++|+|+++++.+. .
T Consensus 162 g~~l~d~~~y~~~~t~ID~~tm~V~~---QV~V---------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ 223 (459)
T d1fwxa2 162 GTNMEDVANYVNVFTAVDADKWEVAW---QVLV---------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM 223 (459)
T ss_dssp SSSTTCGG-EEEEEEEEETTTTEEEE---EEEE---------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred CccccchhhcceEEEEEecCCceEEE---Eeee---------------CCChhccccCCCCCEEEEEeccccCCcchhhc
Confidence 235667777655431 1111 235678999999999887531 1
Q ss_pred ------cEEEEEeeC-------------------------CCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 349 ------NLKLWDIRM-------------------------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 349 ------~i~lwd~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
.+.+++... ....+..+.....+ ..+.++|||+
T Consensus 224 ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsP----------------HGV~vSPDGK 287 (459)
T d1fwxa2 224 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKK 287 (459)
T ss_dssp TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSC----------------CCEEECTTSS
T ss_pred ccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCC----------------CceEECCCCC
Confidence 234444311 00111112211111 5799999999
Q ss_pred EEEEEe-CCCeEEEEecCC
Q 010801 398 HFATGS-YSNLLRIFSHGV 415 (501)
Q Consensus 398 ~l~s~~-~dg~i~iwd~~~ 415 (501)
++++++ .+.++.|+|++.
T Consensus 288 yi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 288 HLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp EEEEECTTSSBEEEEEGGG
T ss_pred EEEEeCCcCCcEEEEEehh
Confidence 988665 489999999964
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.35 E-value=0.032 Score=49.66 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=24.4
Q ss_pred eEEEEEccCCCEEEEEecC-CcEEEEEecCCc
Q 010801 35 VSAIEFDKTGDYLAVGDRG-GRVILFETVGGK 65 (501)
Q Consensus 35 v~~v~~s~~g~~latg~~d-g~i~iw~~~~~~ 65 (501)
....++.++|++++.|+.+ ..+.+||..+..
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~ 109 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 109 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred eeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence 4466788999999998755 589999988763
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.19 E-value=0.0098 Score=52.58 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=50.8
Q ss_pred ceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeee-eeecCCC--CCCCcccceEEEEEecCCCcEEEEEeCCCeEEE
Q 010801 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN-IVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~-~~~~~~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~ 294 (501)
....+..+|||++++++ -+.++.++|++.-...+. ..+.+.. ......-....-+|+..| +...+.--|..|.-
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~k 354 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 354 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEE
Confidence 34568899999999886 899999999973111110 0000000 001122334677899888 77777778999999
Q ss_pred EEccC
Q 010801 295 VDMRQ 299 (501)
Q Consensus 295 wd~~~ 299 (501)
|++..
T Consensus 355 w~~~~ 359 (459)
T d1fwxa2 355 WNIED 359 (459)
T ss_dssp EEHHH
T ss_pred Eecch
Confidence 99864
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.16 E-value=0.043 Score=48.79 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=23.3
Q ss_pred EEEEeecCCCCEEEEeeCC-CeEEEEeccccceee
Q 010801 118 RVRWCAAPNGSMFILSTND-KTIKLWKVRDQKVKK 151 (501)
Q Consensus 118 ~v~~~~~~~~~~l~s~s~d-~~i~lw~~~~~~~~~ 151 (501)
..++. +++.+++.|+.+ ..+.+||..+.....
T Consensus 80 ~~~~~--~~g~i~v~Gg~~~~~~~~yd~~~~~w~~ 112 (387)
T d1k3ia3 80 GISMD--GNGQIVVTGGNDAKKTSLYDSSSDSWIP 112 (387)
T ss_dssp EEEEC--TTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred EEEEe--cCCcEEEeecCCCcceeEecCccCcccc
Confidence 34554 788888888644 689999998876543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.13 E-value=0.054 Score=45.24 Aligned_cols=204 Identities=12% Similarity=0.102 Sum_probs=115.0
Q ss_pred cccceEEEEEccCCCEEEEEe-cCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccc
Q 010801 31 DVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (501)
Q Consensus 31 h~~~v~~v~~s~~g~~latg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (501)
+...+..++|.+..+.|.... .++.|+..++.++... ..+..-.
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~---------------------------~v~~~~~-------- 78 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---------------------------TIIRQDL-------- 78 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------------------------EEECTTC--------
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE---------------------------EEEEecc--------
Confidence 344578899998888887765 4567888787655331 1122111
Q ss_pred cccccceeEEEEeecCCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccce
Q 010801 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (501)
Q Consensus 110 ~~~~~~V~~v~~~~~~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (501)
..+..|++.+ ..+.+..+-...+.|.+.++.......+.
T Consensus 79 ----~~p~~iAvD~-~~~~lY~~d~~~~~I~~~~~dg~~~~~l~------------------------------------ 117 (263)
T d1npea_ 79 ----GSPEGIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRRVLF------------------------------------ 117 (263)
T ss_dssp ----CCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEE------------------------------------
T ss_pred ----ccccEEEEec-cCCeEEEeccCCCEEEEEecCCceEEEEe------------------------------------
Confidence 3467777752 23334444456678888887755432221
Q ss_pred eccCcceEEEeccCceeeeeeEeecCCcccceEEEEecCCCCEEEEE-c-CCe--EEEEECCCCCeeeeeeecCCCCCCC
Q 010801 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLR--INLWNLEISDQCFNIVDMKPSNMDD 265 (501)
Q Consensus 190 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (501)
.........+++.|...++.-. . .+. |.--+++ +.....+ ...
T Consensus 118 -------------------------~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-G~~~~~i-------~~~ 164 (263)
T d1npea_ 118 -------------------------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRIL-------AQD 164 (263)
T ss_dssp -------------------------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEE-------ECT
T ss_pred -------------------------cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC-CCCceee-------eee
Confidence 1223456788898877777654 2 223 4444555 2222222 111
Q ss_pred cccceEEEEEecCCCcEEEEE-eCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEE
Q 010801 266 LTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (501)
Q Consensus 266 ~~~~v~~v~~~p~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~ 344 (501)
.-....++++++.+ +.|+.+ ...+.|...|+...... .+... .....++++. +.+|..
T Consensus 165 ~~~~P~glaiD~~~-~~lYw~d~~~~~I~~~~~~g~~~~----~v~~~--------------~~~P~~lav~--~~~lYw 223 (263)
T d1npea_ 165 NLGLPNGLTFDAFS-SQLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYY 223 (263)
T ss_dssp TCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEE
T ss_pred cccccceEEEeecC-cEEEEEeCCCCEEEEEECCCCCeE----EEECC--------------CCCcEEEEEE--CCEEEE
Confidence 22356899999887 656555 45788998888765322 22222 1123466665 455554
Q ss_pred Ec--CCcEEEEEeeCCCCceeEe
Q 010801 345 RD--YMNLKLWDIRMDSTPVATF 365 (501)
Q Consensus 345 ~~--~~~i~lwd~~~~~~~~~~~ 365 (501)
.+ .+.|...|..+ ++.+..+
T Consensus 224 td~~~~~I~~~~~~~-g~~~~~~ 245 (263)
T d1npea_ 224 TDWKTNSVIAMDLAI-SKEMDTF 245 (263)
T ss_dssp EETTTTEEEEEETTT-TEEEEEE
T ss_pred EECCCCEEEEEECCC-CccceEE
Confidence 43 37777777764 5555444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.65 E-value=0.17 Score=43.78 Aligned_cols=169 Identities=10% Similarity=0.048 Sum_probs=93.0
Q ss_pred ceEEEEecCCCCEEEEE-c------------CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE--ecCCCcEEE
Q 010801 220 NINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLA 284 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~ 284 (501)
...+|+..|+|..++++ . .|.|.++|+.........+...........-....+.+ .+++..+|+
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 34467778888777664 2 38899999875443333222221111111112344443 345522455
Q ss_pred EEe---CCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc---------------
Q 010801 285 YSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--------------- 346 (501)
Q Consensus 285 ~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--------------- 346 (501)
+.. ...+|.+|++..........+.+.. + .....+++++..++.+++|-.
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~----~--------~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~ 183 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH----K--------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL 183 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECC----T--------TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHT
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCC----c--------cccCccceEEecCCCEEEecCccCcChhhhhhhHhh
Confidence 443 3567888887654322212222222 0 124578999999999888831
Q ss_pred -CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEE-EeCCCeEEEEecCCCC
Q 010801 347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGS 417 (501)
Q Consensus 347 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~ 417 (501)
.....+|.... +.......+...+ +.++++||+++|+. -+..++|++|++....
T Consensus 184 ~~~~g~v~~~~~-~~~~~~~~~l~~p----------------NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 184 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp TCCCEEEEEECS-SCEEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred cCCceeEEEEcC-CceEEEcCCCCcc----------------ceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 02345665543 3322222322222 78999999987655 4567899999997553
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.47 E-value=0.18 Score=41.90 Aligned_cols=154 Identities=9% Similarity=0.105 Sum_probs=100.2
Q ss_pred CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccC
Q 010801 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (501)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 317 (501)
...|.|.|+.......+. .-...+.-.+|.. +.|+.-+ ...+.++|+++.+.. +.+..
T Consensus 44 ~~~VvIidl~n~~~~~Rr-----------pi~AdsAIMhP~~-~IiALra-g~~LQiFnletK~kl----ks~~~----- 101 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRR-----------PISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM----- 101 (327)
T ss_dssp EEEEEEEETTSTTSCEEE-----------ECCCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEEEC-----
T ss_pred CceEEEEECCCCCcceec-----------ccchhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhh----ceEEc-----
Confidence 457888888744443321 1112345578987 8887766 668999999987543 33333
Q ss_pred CCcceeeecccceeEEEEeeCCCEEEEEcCCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc
Q 010801 318 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (501)
Q Consensus 318 ~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 397 (501)
..+|.-=.|-. .+.|+--++..|+=|+++.+..+...+.-|.... +.. +..-..+++++
T Consensus 102 ---------~e~VvfWkWis-~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~--------~~Q---IInY~~d~~~k 160 (327)
T d1utca2 102 ---------TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA--------GCQ---IINYRTDAKQK 160 (327)
T ss_dssp ---------SSCCCEEEESS-SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGT--------TCE---EEEEEECTTSC
T ss_pred ---------CCCcEEEEecC-CCEEEEEcCCceEEEcccCCCCchhhhhhccccc--------Cce---EEEEEECCCCC
Confidence 23565555654 3456655668999999975567888887776542 112 25778889999
Q ss_pred EEEEEe---C----CCeEEEEecCCCCcceEEEecccCcccceeec
Q 010801 398 HFATGS---Y----SNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (501)
Q Consensus 398 ~l~s~~---~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 436 (501)
+++..+ . .|.+.+|+.+. ...+.+++|......+.+.
T Consensus 161 W~~l~GI~~~~~~i~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~~ 204 (327)
T d1utca2 161 WLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKME 204 (327)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTT--TEEEEECCSEEEEEEECCT
T ss_pred EEEEEeEecCCCceeEEEEEEEecc--CcCccccceeeeeEEEEcC
Confidence 877443 2 36788999884 4568889987765555443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.92 E-value=0.44 Score=41.06 Aligned_cols=161 Identities=6% Similarity=0.029 Sum_probs=80.2
Q ss_pred CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEE--ecCCCc-EEEEEeCCCeEEEEEccC---Ccccccccceeec
Q 010801 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILRD 312 (501)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~-~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~~ 312 (501)
.+|.+|.+......+..+.........-...+..+|+ ++..+. ++++...+|.+..|.+.. +.......+.+..
T Consensus 99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~ 178 (353)
T d1h6la_ 99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM 178 (353)
T ss_dssp CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC
Confidence 3677887763332332211110001111224667777 555424 456667789999887743 2222333344444
Q ss_pred ccccCCCcceeeecccceeEEEEeeCCCEEEEEcC-CcEEEEEeeCCCCceeE-eeccccccccccccCCCCCcceeeEE
Q 010801 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFEC 390 (501)
Q Consensus 313 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (501)
...+..|.+.+....|..+.. ..|..++.......... +..-... .-.-++-.+
T Consensus 179 --------------~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~----------~l~~D~EGl 234 (353)
T d1h6la_ 179 --------------NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR----------HLTPDIEGL 234 (353)
T ss_dssp --------------SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSS----------SCCSCEEEE
T ss_pred --------------CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCc----------cccCCcccc
Confidence 357899999998888888754 44444444321111111 1100000 000122455
Q ss_pred EEc--CCCc-EEE-EEeCCCeEEEEecCCCCcceEEE
Q 010801 391 SVS--GDGL-HFA-TGSYSNLLRIFSHGVGSAGGITV 423 (501)
Q Consensus 391 ~~s--~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~ 423 (501)
+.- .++. +|+ |.-.+++..|||..+.......+
T Consensus 235 aiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 235 TIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp EEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 543 2322 544 44458899999998653333333
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.67 E-value=0.69 Score=41.41 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=24.8
Q ss_pred ceEEEEEccCCCEEEEEe-----cCCcEEEEEecCCcC
Q 010801 34 IVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKN 66 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~-----~dg~i~iw~~~~~~~ 66 (501)
.+...++|||++++|.+- +...|+++|+.+++.
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~ 163 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE 163 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence 345678899999998542 234799999998864
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.57 E-value=0.71 Score=41.59 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=40.3
Q ss_pred ccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCC-CCCcccceEEEEEecC
Q 010801 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-MDDLTEVITSAEFHPI 278 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~ 278 (501)
-...++|+|.|+|+++++- ..|.|++++.. .+....+..+.... ...-+.....|+++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3467899999999999988 68999999877 34333332222111 1222456789999986
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.27 E-value=0.78 Score=39.47 Aligned_cols=75 Identities=5% Similarity=-0.072 Sum_probs=44.8
Q ss_pred cccceEEEEecCCCCEEEEE----cC------------CeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCC
Q 010801 217 HDFNINSISNNSDCETFVSA----DD------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (501)
Q Consensus 217 ~~~~v~~l~~~~~~~~l~~~----~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~ 280 (501)
.....+++++..++.++++- .+ +...+|..+ .+..... . ..-...+.|+++|++.
T Consensus 148 ~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-~~~~~~~-------~-~~l~~pNGI~~s~d~~ 218 (340)
T d1v04a_ 148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PNDVRVV-------A-EGFDFANGINISPDGK 218 (340)
T ss_dssp TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-SSCEEEE-------E-EEESSEEEEEECTTSS
T ss_pred cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-CCceEEE-------c-CCCCccceeEECCCCC
Confidence 34457788888888777772 11 233444444 2222111 1 1224568999999983
Q ss_pred cEEEEEeCCCeEEEEEccCC
Q 010801 281 NLLAYSSSRGFVRLVDMRQS 300 (501)
Q Consensus 281 ~~l~~~~~dg~i~~wd~~~~ 300 (501)
.++++-+..+.|+.|++...
T Consensus 219 ~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 219 YVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp EEEEEEGGGTEEEEEEECTT
T ss_pred EEEEEeCCCCeEEEEEeCCC
Confidence 34455556889999998754
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.81 Score=37.74 Aligned_cols=122 Identities=10% Similarity=0.038 Sum_probs=66.3
Q ss_pred ccceEEEEecCCCCEEEEE---cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEE-eCCCeEE
Q 010801 218 DFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVR 293 (501)
Q Consensus 218 ~~~v~~l~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~ 293 (501)
......+++.|...+|.-. ..+.|...+++ +.....+ ....-....++++++.+ +.|+.+ ...+.|.
T Consensus 119 ~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-Gs~~~~l-------~~~~~~~p~gl~iD~~~-~~lYw~d~~~~~I~ 189 (266)
T d1ijqa1 119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSIS 189 (266)
T ss_dssp TCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEE
T ss_pred CCCcceEEEEcccCeEEEeccCCCcceeEeccC-CCceecc-------cccccceeeEEEeeccc-cEEEEecCCcCEEE
Confidence 3456778888865555543 34567667776 3323222 12223456899999987 555554 5578899
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEee
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFK 366 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~ 366 (501)
..|+...... .+... .. ......++++. +.+|...+ .+.|+..+..+ +.....+.
T Consensus 190 ~~~~dG~~~~----~~~~~-~~----------~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~-g~~~~~~~ 246 (266)
T d1ijqa1 190 SIDVNGGNRK----TILED-EK----------RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLLA 246 (266)
T ss_dssp EEETTSCSCE----EEEEC-TT----------TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred EEECCCCCEE----EEEeC-CC----------cccccEEEEEE--CCEEEEEECCCCeEEEEECCC-CcceEEEE
Confidence 8898654321 22222 00 01123456655 44555443 37777777654 44444443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.87 Score=37.56 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=94.5
Q ss_pred cceEEEEecCCCCEEEEE--cCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEe--CCCeEEE
Q 010801 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRL 294 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~~ 294 (501)
..+..+++.+.+..|..+ ..+.|.+.+++ +...... +.........++++|.. .+|.... ..+.|..
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~-------~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r 147 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK 147 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEE-------EcCCCCCcceEEEEccc-CeEEEeccCCCcceeE
Confidence 445678887766666555 67899999998 4433322 22233456899999876 4444433 2455666
Q ss_pred EEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc--CCcEEEEEeeCCCCceeEeecccccc
Q 010801 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLR 372 (501)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~ 372 (501)
.++...... .+... .-....++++.+.++.|..++ .+.|...++.. ..............
T Consensus 148 ~~~dGs~~~----~l~~~-------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~~ 209 (266)
T d1ijqa1 148 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLA 209 (266)
T ss_dssp EETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTS
T ss_pred eccCCCcee----ccccc-------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCccc
Confidence 666543221 11111 113568899999888777654 37888888752 22222222222111
Q ss_pred ccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEec
Q 010801 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (501)
. ..++++. ++.+..+-..++.|...+..+++.. ..+..
T Consensus 210 ~-------------p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~-~~~~~ 247 (266)
T d1ijqa1 210 H-------------PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV-NLLAE 247 (266)
T ss_dssp S-------------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC-EEEEC
T ss_pred c-------------cEEEEEE-CCEEEEEECCCCeEEEEECCCCcce-EEEEc
Confidence 0 0467776 3445555556788888887777544 33433
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.74 E-value=1.6 Score=40.47 Aligned_cols=53 Identities=8% Similarity=0.022 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEecc-cCcccceeeccCCccccCccceeeee
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRSSLSNLTRG 452 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~~ 452 (501)
.+.+++.|+.||.++.+|.++|+.+ ..++.. ......+.+.. +|+. +..+++|
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~l-W~~~l~~~~~a~P~ty~~--dGkq--Yi~v~~g 527 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKEL-WNFKMPSGGIGSPMTYSF--KGKQ--YIGSMYG 527 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE--TTEE--EEEEEEC
T ss_pred cCCEEEEECCCCeEEEEECCCCcEE-EEEECCCCceecceEEEE--CCEE--EEEEEec
Confidence 4567888999999999999999665 333322 22233344444 5554 3334443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.70 E-value=0.95 Score=37.54 Aligned_cols=136 Identities=7% Similarity=0.109 Sum_probs=74.0
Q ss_pred cceEEEEecCCCCEEEE-E---c----CCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecC--CCcEEEEEeC
Q 010801 219 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSS 288 (501)
Q Consensus 219 ~~v~~l~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~ 288 (501)
..|..-..+++.++++. | . .|.+.+|..+ .+.... +++|.+.-..+.+..+ ...+|+.+..
T Consensus 148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~--------ieGhaa~F~~~~~~g~~~~~~lf~fa~r 218 (327)
T d1utca2 148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQP--------IEGHAASFAQFKMEGNAEESTLFCFAVR 218 (327)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEE--------ECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCcc--------ccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence 45556666788887754 3 2 3678899988 333222 5777655444443311 1134444332
Q ss_pred ---CCeEEEEEccCCccccc--ccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc-CCcEEEEEeeCCCCce
Q 010801 289 ---RGFVRLVDMRQSALCDH--SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 362 (501)
Q Consensus 289 ---dg~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~-~~~i~lwd~~~~~~~~ 362 (501)
.+.+++.++........ ..+..+. ..+|.. -..-..++..++.-..+..-+ .|-|++||+.+ +.++
T Consensus 219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi-~fppea------~~DFPvamqvs~kygiiyviTK~G~i~lyDleT-gt~i 290 (327)
T d1utca2 219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPEA------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI 290 (327)
T ss_dssp ETTEEEEEEEECSCCCTTCCCCCCEEEEC-CCCTTC------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred CCCCcEEEEEEcCCCccCCCCCcceeEEE-ECCccc------cCCcEEEEEeeccCCEEEEEecCcEEEEEEccc-ccEE
Confidence 36788888866321110 0111111 111111 123345677777665555544 49999999997 8877
Q ss_pred eEeeccccc
Q 010801 363 ATFKIHEHL 371 (501)
Q Consensus 363 ~~~~~~~~~ 371 (501)
..-+.....
T Consensus 291 ~~nRIs~~~ 299 (327)
T d1utca2 291 YMNRISGET 299 (327)
T ss_dssp EEEECCSSC
T ss_pred EEeecCCCc
Confidence 766655544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.66 E-value=1.1 Score=41.88 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=38.7
Q ss_pred CcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 348 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
|.|.-||+.+ ++.+-+........ .-..+-.+.++++|+.||.++.+|.++|+.+ .++.
T Consensus 457 G~l~AiD~~t-Gk~~W~~~~~~p~~----------------gg~lstagglVF~G~~dg~l~A~Da~TGe~L-W~~~ 515 (573)
T d1kb0a2 457 GRLLAWDPVA-QKAAWSVEHVSPWN----------------GGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAP 515 (573)
T ss_dssp EEEEEEETTT-TEEEEEEEESSSCC----------------CCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred ccEEEeCCCC-CceEeeecCCCCCC----------------CceEEEcCCEEEEECCCCeEEEEECCCCcEe-EEEE
Confidence 5677777775 66655554332211 1122336778889999999999999999665 4444
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.70 E-value=1.7 Score=33.79 Aligned_cols=83 Identities=11% Similarity=0.165 Sum_probs=46.8
Q ss_pred ceEEEEEccCCCEEEEEecCCcEEEEEecCCcCCCCccchhhhhhhccccccCCCCceeeEeeeccCCcchhhccccccc
Q 010801 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (501)
Q Consensus 34 ~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (501)
+|.+++.. +.+.+++|+....+.+|-+++|+.. .+..-|.+.+...+++.
T Consensus 105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklr----------------kL~~vPpFsFVtDI~~d------------- 154 (313)
T d2hu7a1 105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLR----------------ELARLPGFGFVSDIRGD------------- 154 (313)
T ss_dssp EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEE----------------EEEEESSCEEEEEEETT-------------
T ss_pred EEEEeeec-CceEEEecccCCceEEEEEeCCcee----------------eeccCCCcceEEeccCC-------------
Confidence 45555553 4566778888888999999988753 22233344444444432
Q ss_pred cceeEEEEeecCCCCEEEEeeC-CCeEEEEeccccc
Q 010801 114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQK 148 (501)
Q Consensus 114 ~~V~~v~~~~~~~~~~l~s~s~-d~~i~lw~~~~~~ 148 (501)
-|..+.+. .++..-|.++.- .|.+++++...|.
T Consensus 155 -~I~G~g~~-~g~~~sfF~adl~SG~lri~tpkeGS 188 (313)
T d2hu7a1 155 -LIAGLGFF-GGGRVSLFTSNLSSGGLRVFDSGEGS 188 (313)
T ss_dssp -EEEEEEEE-ETTEEEEEEEETTTEEEEEECCSSEE
T ss_pred -eEEEEeee-cCCcceEEEEecccCCEEEecCCCCc
Confidence 25555544 133333555543 6677777665544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.76 E-value=4.2 Score=36.24 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=26.8
Q ss_pred cceEEEEEccCCCEEEEEecCCcEEEEEecCCc
Q 010801 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65 (501)
Q Consensus 33 ~~v~~v~~s~~g~~latg~~dg~i~iw~~~~~~ 65 (501)
+..++|+|.|||++|++--..|.|++++..+++
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~ 59 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence 567899999999988875447999998877664
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=90.63 E-value=6.3 Score=36.22 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=33.8
Q ss_pred eCCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEEE
Q 010801 337 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG 402 (501)
Q Consensus 337 p~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~ 402 (501)
-.+.++++|+ |+.++-+|.++ ++.+-++........ .-+.+..+|+ ||+..
T Consensus 467 TagglVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~~~~--------------~P~ty~~dGkqyv~v~ 519 (560)
T d1kv9a2 467 TAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQSGIVA--------------APMTFELAGRQYVAIM 519 (560)
T ss_dssp ETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCS--------------CCEEEEETTEEEEEEE
T ss_pred ECCCEEEEECCCCcEEEEECCC-CcEeEEEECCCCccc--------------cCEEEEECCEEEEEEE
Confidence 3456666775 69999999997 888888775543321 2366666886 44433
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.23 E-value=3.2 Score=32.20 Aligned_cols=232 Identities=11% Similarity=0.046 Sum_probs=110.2
Q ss_pred CCCCEEEEeeCCCeEEEEeccccceeeeeccCCCcccccccccccccCccccCCCCCCcccccceeccCc--ceEEEecc
Q 010801 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM--ATKIANVG 202 (501)
Q Consensus 125 ~~~~~l~s~s~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~w~~~ 202 (501)
.+.++++.+...|.+.++-+..++..++....... . ........+++...-...| .-.++-.+
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~-------------~--~~Pk~~ldfi~f~RDV~kGkE~Hai~~~N 88 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINS-------------V--LDPHYGVGRVILVRDVSKGAEQHALFKVN 88 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEECCSSCCSE-------------E--CEECTTBSEEEEEEECSTTSCCEEEEEEE
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEEecccccC-------------c--CCCccCcceEEEEeehhcCcceeeEEEEc
Confidence 34567888888999999998888766654322111 0 0001111112111111111 11222222
Q ss_pred CceeeeeeEeecCCcccceEEEEecCCCCEEEEE-cCCeEEEEECCCCCeeeeeeecCCCCCC--CcccceEEEEEecCC
Q 010801 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIY 279 (501)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~ 279 (501)
....++..+.- ....-.|.++++. +.+...+| ......+|-++ ++...+..++.+..+- -....|..+.+-.-+
T Consensus 89 lk~~GEE~~i~-spk~vRI~S~~yd-dk~vvF~Gased~~~LYvie-gGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~ 165 (313)
T d2hu7a1 89 TSRPGEEQRLE-AVKPMRILSGVDT-GEAVVFTGATEDRVALYALD-GGGLRELARLPGFGFVSDIRGDLIAGLGFFGGG 165 (313)
T ss_dssp TTSTTCEEECT-TSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEE-TTEEEEEEEESSCEEEEEEETTEEEEEEEEETT
T ss_pred cCCCCeeeEec-CCceEEEEEeeec-CceEEEecccCCceEEEEEe-CCceeeeccCCCcceEEeccCCeEEEEeeecCC
Confidence 21111111100 1111345566554 33455667 77888899888 6666665544432221 012233344333222
Q ss_pred CcEEEEEeC-CCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEE-cC-CcEE--EEE
Q 010801 280 CNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLK--LWD 354 (501)
Q Consensus 280 ~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~-~~-~~i~--lwd 354 (501)
+.-|.++.. .|.+++++... +.++.....+..+. +++ .. +.-+ -+|
T Consensus 166 ~~sfF~adl~SG~lri~tpke----------------------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D 216 (313)
T d2hu7a1 166 RVSLFTSNLSSGGLRVFDSGE----------------------------GSFSSASISPGMKV-TAGLETAREARLVTVD 216 (313)
T ss_dssp EEEEEEEETTTEEEEEECCSS----------------------------EEEEEEEECTTSCE-EEEEEESSCEEEEEEC
T ss_pred cceEEEEecccCCEEEecCCC----------------------------CcccceeEccCcee-eeccCCCCceEEEEEe
Confidence 233444444 56666665543 34666666776665 443 11 3322 335
Q ss_pred eeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEe
Q 010801 355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (501)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 412 (501)
++. .......-....... |.... ++-+-+.|++++++.+-.||.=++|.
T Consensus 217 ~~s--~~yerve~P~kd~~s----y~p~~---I~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 217 PRD--GSVEDLELPSKDFSS----YRPTA---ITWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp TTT--CCEEECCCSSCHHHH----HCCSE---EEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred ccc--CceeeeecCccccee----ecceE---EEeeeeCCCCcEEEEEecCCchheee
Confidence 542 222222222111100 00011 13355899999999999999999997
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=89.67 E-value=7.8 Score=35.86 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCcceEEEe
Q 010801 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (501)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (501)
.|.+++.|+.||.++.+|.++|+.+ ..+.
T Consensus 483 agglVF~G~~Dg~l~A~Da~TGe~L-W~~~ 511 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKARDSDTGDLL-WKFK 511 (596)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEe-eEEE
Confidence 5678888999999999999999665 4443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.71 E-value=10 Score=34.79 Aligned_cols=49 Identities=16% Similarity=0.014 Sum_probs=32.5
Q ss_pred CCCEEEEEc-CCcEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCc-EEEE
Q 010801 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFAT 401 (501)
Q Consensus 338 ~~~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s 401 (501)
.+.++++|+ |+.++-+|.++ ++.+-++........ .-+.|..||+ ||++
T Consensus 474 agglVf~G~~dg~l~A~Da~t-Ge~lW~~~l~~~~~a--------------~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKD-GKELWNFKMPSGGIG--------------SPMTYSFKGKQYIGS 524 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCS--------------CCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCC-CcEEEEEECCCCcee--------------cceEEEECCEEEEEE
Confidence 355666675 69999999997 888877765443221 2366666886 4443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=87.19 E-value=5.3 Score=36.89 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=21.4
Q ss_pred CCCcEEEEEeCCCeEEEEEccCCccc
Q 010801 278 IYCNLLAYSSSRGFVRLVDMRQSALC 303 (501)
Q Consensus 278 ~~~~~l~~~~~dg~i~~wd~~~~~~~ 303 (501)
.+ .++++|+.||.++.+|.++++.+
T Consensus 487 ag-glVF~G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 487 AG-NVVFQGTADGRLVAYHAATGEKL 511 (573)
T ss_dssp TT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred cC-CEEEEECCCCeEEEEECCCCcEe
Confidence 45 67888999999999999999854
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=86.65 E-value=8.5 Score=32.70 Aligned_cols=134 Identities=10% Similarity=0.180 Sum_probs=72.4
Q ss_pred ceEEEEe--cCC-CCE-EEEE-cCCeEEEEECCCCCe-eeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEE
Q 010801 220 NINSISN--NSD-CET-FVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (501)
Q Consensus 220 ~v~~l~~--~~~-~~~-l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 293 (501)
.+..+++ ++. |.. +++. .+|.+..|.+...+. .+....++ .+ .....+-.+.+.+.. ..|+.+-++.-|.
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr--~f-~~~~q~EGCVvDde~-~~LyisEE~~Giw 204 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR--AF-KMNSQTEGMAADDEY-GSLYIAEEDEAIW 204 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE--EE-ECSSCEEEEEEETTT-TEEEEEETTTEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeee--cc-CCCCccceEEEeCCC-CcEEEecCccceE
Confidence 3555555 554 444 3345 789999887742221 11110000 01 123467888999987 8888888887777
Q ss_pred EEEccCCcccccccceeecccccCCCcceeeecccceeEEEEee--CCC-EEEEEc--CCcEEEEEeeCCCCceeEeec
Q 010801 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQ-HLLSRD--YMNLKLWDIRMDSTPVATFKI 367 (501)
Q Consensus 294 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~-~l~~~~--~~~i~lwd~~~~~~~~~~~~~ 367 (501)
.++........ ...... ... ......+..++.-. +++ ||++.+ +++..+||.....+.+..|..
T Consensus 205 ~~~a~~~~~~~--~~~i~~-~~g-------~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i 273 (353)
T d1h6la_ 205 KFSAEPDGGSN--GTVIDR-ADG-------RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI 273 (353)
T ss_dssp EEESSTTSCSC--CEEEEE-CSS-------SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred EEEeccCCCcc--ceeeec-ccC-------ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence 66654321111 011111 000 01234566776553 333 666553 499999998764566766653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.61 E-value=12 Score=32.01 Aligned_cols=119 Identities=11% Similarity=0.068 Sum_probs=65.3
Q ss_pred ceEEEEEecCCCcEEEEEeCCCeEEEEEccCCcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEcCC
Q 010801 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (501)
Q Consensus 269 ~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~~~ 348 (501)
...-+++++.. .+++.|+.++ +.+..+..-+ +.++. ........ ....-..|..++|+- ..|+...++
T Consensus 38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~------~~~~~-~~~~~~~~-~~~~ip~v~~vafs~--d~l~v~~~~ 105 (381)
T d1xipa_ 38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLR------DHITS-DSTPLTFK-WEKEIPDVIFVCFHG--DQVLVSTRN 105 (381)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHH------HHHHS-SSCCCCCS-EEEECTTEEEEEEET--TEEEEEESS
T ss_pred ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHH------HHhhc-cCCCCcce-eccCCCCeEEEEeeC--CEEEEEeCC
Confidence 34567888876 6777777764 6666543311 00000 00000000 011113588899974 456666667
Q ss_pred cEEEEEeeCCCCceeEeeccccccccccccCCCCCcceeeEEEEcCCCcEEEEEeCCCeEEEEecCCCC
Q 010801 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (501)
Q Consensus 349 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 417 (501)
.+..++... -............. .++.+.|. .++....+|.+.++++..+.
T Consensus 106 ~l~~~~~~~-l~~~~~~~~~~~~~---------------~~~~~~p~--~~~l~~~~~~~~~~~l~~~~ 156 (381)
T d1xipa_ 106 ALYSLDLEE-LSEFRTVTSFEKPV---------------FQLKNVNN--TLVILNSVNDLSALDLRTKS 156 (381)
T ss_dssp EEEEEESSS-TTCEEEEEECSSCE---------------EEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEeec-cccccccccccccc---------------cceecCCc--eeEEEecCCCEEEEEeccCc
Confidence 788888764 22222222122211 56777664 56677778999999998874
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.48 E-value=16 Score=31.23 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=60.3
Q ss_pred ceEEEEecCCCCEEEEEcCCeEEEEECCCCCeeeeeeecCCCCCCCcccceEEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 010801 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (501)
Q Consensus 220 ~v~~l~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 299 (501)
.|..++|+.+ .++...++.+..++...-..... ......++..+.++|. .++....+|.+.++++..
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~--------~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~ 154 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRT--------VTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRT 154 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEE--------EEECSSCEEEEEECSS---EEEEEETTSEEEEEETTT
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccc--------cccccccccceecCCc---eeEEEecCCCEEEEEecc
Confidence 5778888644 56666666788888774333221 1122346788888775 466777899999999988
Q ss_pred CcccccccceeecccccCCCcceeeecccceeEEEEeeCCCEEEEEc
Q 010801 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~~~~ 346 (501)
+... ....+ ... + .-...+.+++|++.|+.++++.
T Consensus 155 ~~~~----~~~~~-v~~------~-~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 155 KSTK----QLAQN-VTS------F-DVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp CCEE----EEEES-EEE------E-EECSSEEEEEETTSCEEEEEEE
T ss_pred Cccc----cccCC-cce------E-EecCCceEEEEeCCcEEEEEeC
Confidence 6432 11111 000 0 0024566777777777776664
|