Citrus Sinensis ID: 010845
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | 2.2.26 [Sep-21-2011] | |||||||
| O80874 | 508 | Alternative NAD(P)H dehyd | yes | no | 0.975 | 0.958 | 0.784 | 0.0 | |
| Q8GWA1 | 510 | Alternative NAD(P)H dehyd | no | no | 0.983 | 0.962 | 0.779 | 0.0 | |
| Q55CD9 | 451 | Probable NADH dehydrogena | yes | no | 0.883 | 0.977 | 0.364 | 2e-81 | |
| O14121 | 551 | Probable NADH-ubiquinone | yes | no | 0.861 | 0.780 | 0.351 | 1e-73 | |
| O43090 | 551 | Probable NADH-ubiquinone | no | no | 0.827 | 0.749 | 0.362 | 1e-72 | |
| P40215 | 560 | External NADH-ubiquinone | yes | no | 0.875 | 0.780 | 0.362 | 5e-63 | |
| F2Z699 | 582 | External alternative NADH | yes | no | 0.853 | 0.731 | 0.376 | 6e-63 | |
| Q07500 | 545 | External NADH-ubiquinone | no | no | 0.899 | 0.823 | 0.357 | 4e-62 | |
| Q1JPL4 | 571 | NAD(P)H dehydrogenase B1, | no | no | 0.611 | 0.534 | 0.401 | 2e-61 | |
| F4JJJ3 | 580 | NAD(P)H dehydrogenase B3, | no | no | 0.697 | 0.6 | 0.375 | 4e-57 |
| >sp|O80874|NDA2_ARATH Alternative NAD(P)H dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/493 (78%), Positives = 430/493 (87%), Gaps = 6/493 (1%)
Query: 8 LRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDAS-PSTVQLTQYSGLGPTKANEKPRVV 66
RN + S SY+ + S + + A P+ V +QYSGL PT+ EKPRVV
Sbjct: 21 FRNSGSSSLSYT-----LASRFCTAQETQIQSPAKIPNDVDRSQYSGLPPTREGEKPRVV 75
Query: 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPA 126
VLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RIQPA
Sbjct: 76 VLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRIQPA 135
Query: 127 ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186
ISREPGS+FFL++C+ +D D H VHCET+TD L TL+PWKFKI+YDKLVIA GAEASTFG
Sbjct: 136 ISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIAYDKLVIASGAEASTFG 195
Query: 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246
IHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGIS+EEK RLLHCVVVGGGPTGVEFS
Sbjct: 196 IHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKRRLLHCVVVGGGPTGVEFS 255
Query: 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIV 306
GELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSFDDRLR YA QL+KSGVR VRGIV
Sbjct: 256 GELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSFDDRLRRYAIKQLNKSGVRFVRGIV 315
Query: 307 KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366
KDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL LPK P GRIGIDEW+RVPSVQDV
Sbjct: 316 KDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSLGLPKDPTGRIGIDEWMRVPSVQDV 375
Query: 367 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFV 426
FA+GDCSGYLE+TGK LPALAQVAER+GKYL +LLN IGK GGRANSAK++ELG PFV
Sbjct: 376 FAIGDCSGYLETTGKPTLPALAQVAEREGKYLANLLNAIGKGNGGRANSAKEIELGVPFV 435
Query: 427 YRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNW 486
Y+HLGSMATIGRYKALVDLR++K++KG+S+ GF+SW +WRSAYLTRV+SWRNRFYVA+NW
Sbjct: 436 YKHLGSMATIGRYKALVDLRESKDAKGISMTGFVSWFIWRSAYLTRVISWRNRFYVAINW 495
Query: 487 ATTFVFGRDISRI 499
TTFVFGRDISRI
Sbjct: 496 FTTFVFGRDISRI 508
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Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 6EC: .EC: -EC: .EC: - |
| >sp|Q8GWA1|NDA1_ARATH Alternative NAD(P)H dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1 | Back alignment and function description |
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Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/494 (77%), Positives = 434/494 (87%), Gaps = 3/494 (0%)
Query: 6 HLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRV 65
++ RNP +SY+ SS +T D + ++ +Y GL PTK EKPRV
Sbjct: 20 NVFRNP--ESYTLSSRFCTALQKQQVTDTVQAKEDVV-NALEPQRYDGLAPTKEGEKPRV 76
Query: 66 VVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQP 125
+VLGSGWAGCR++KGIDTS+YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RIQP
Sbjct: 77 LVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRIQP 136
Query: 126 AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185
AISREPGSY+FL++C+ +D DNH VHCETVT+ TL+PWKFKI+YDKLV+A GAEASTF
Sbjct: 137 AISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAYDKLVLACGAEASTF 196
Query: 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 245
GI+GV ENA FLREVHHAQEIRRKLLLNLMLS+VPGI E+EK RLLHCVVVGGGPTGVEF
Sbjct: 197 GINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKRLLHCVVVGGGPTGVEF 256
Query: 246 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
SGELSDFIM+DVRQRYSHVKD I VTLIEA +ILSSFDDRLRHYA QL+KSGV+LVRGI
Sbjct: 257 SGELSDFIMKDVRQRYSHVKDDIRVTLIEARDILSSFDDRLRHYAIKQLNKSGVKLVRGI 316
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQD 365
VK+V QKLIL+DGTEVPYG LVWSTGVGPS+ V+SLD PK PGGRIGIDEW+RVPSVQD
Sbjct: 317 VKEVKPQKLILDDGTEVPYGPLVWSTGVGPSSFVRSLDFPKDPGGRIGIDEWMRVPSVQD 376
Query: 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPF 425
VFA+GDCSGYLESTGK+ LPALAQVAER+GKYL +L N +GKAGGGRANSAK+MELG+PF
Sbjct: 377 VFAIGDCSGYLESTGKSTLPALAQVAEREGKYLANLFNVMGKAGGGRANSAKEMELGEPF 436
Query: 426 VYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVN 485
VY+HLGSMATIGRYKALVDLR++KE KG+S+AGFLSW +WRSAYLTRVVSWRNRFYVA+N
Sbjct: 437 VYKHLGSMATIGRYKALVDLRESKEGKGISMAGFLSWFIWRSAYLTRVVSWRNRFYVAIN 496
Query: 486 WATTFVFGRDISRI 499
W TTFVFGRDISRI
Sbjct: 497 WLTTFVFGRDISRI 510
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2 | Back alignment and function description |
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Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 270/474 (56%), Gaps = 33/474 (6%)
Query: 28 NLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87
NLI+ ++ + + S+++ K E ++++LG GW +K +++ YD
Sbjct: 5 NLIIRGRNYISDHLTKSSLEKAIIRRQKRGKVIENEKLIILGCGWGSYSFLKNLNSIKYD 64
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAGIDTD 146
+ +SPRNH +FTPLL S+ VGTLEFRS+AEP+ +R+ + ++ + I+ +
Sbjct: 65 ITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVR-----TTRDINEFKYIQASVTSINPE 119
Query: 147 NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEI 206
N+ V V +P F++ YDKLVI +G+ +TFGI GV+ENA FL+E+HHA+EI
Sbjct: 120 NNSV---LVKSTFHNEKP--FEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREI 174
Query: 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK- 265
R+K++ + +P +S EE+ RLL V+VGGG TG+EF+ EL+DF D+ + + V
Sbjct: 175 RQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSEDLSRLFPFVPV 234
Query: 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTEVP 323
+ + + L+EA+ +ILS+FD +L A SG+ + VK+V +IL++G +P
Sbjct: 235 NEVKIILLEASGKILSTFDQKLVKKALINFRNSGIDVRTHSSVKEVLKDYVILDNGDRIP 294
Query: 324 YGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 383
YGLLVWSTG+G LVK+ K RI +D+ LRV + +VF+ GDC+
Sbjct: 295 YGLLVWSTGIGQHPLVKNSSFEKDSHDRIIVDDHLRVKNYSNVFSFGDCANVENKN---- 350
Query: 384 LPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALV 443
P AQVA + YL N + K N K PF ++ LG +A G+ ++
Sbjct: 351 YPPTAQVASQSAVYLAKEFNNLEKLN---PNPPK------PFAFKFLGLLAYTGKKSGIL 401
Query: 444 DLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDIS 497
++ L+GF+ ++ WRSAYLTR+ S R++ V +W T +FGRDIS
Sbjct: 402 ------QTDFFDLSGFIGFITWRSAYLTRLGSLRSKIQVPFDWMRTLIFGRDIS 449
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Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|O14121|NDH1_SCHPO Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.07 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 255/481 (53%), Gaps = 51/481 (10%)
Query: 56 PTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
P K +VVLG+GW +++ IDTSL++V+ VSPRN+ +FT LL ST G++ RS
Sbjct: 85 PLPDPSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRS 144
Query: 116 VAEPIARIQPAISREPGSY--FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173
+ +PI + R Y F+ + C +D D V+H + T + LE +I YD
Sbjct: 145 IVQPIRYML----RHKSCYVKFYEAECTDVDADKKVIHIKKTTTDGVDLEQ---EIKYDY 197
Query: 174 LVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHC 233
LV + GAE TF I G+ E FL+E+ AQ+IR ++L L + + E + R +H
Sbjct: 198 LVCSHGAETQTFNIPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHT 257
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 292
VVVGGGPTG+EF+GE++DFI D++ Y + D VTL+EA +L F +LR Y +
Sbjct: 258 VVVGGGPTGMEFAGEMADFIEDDLKSWYPELADDFAVTLVEALPSVLPMFSAKLRDYTQS 317
Query: 293 QLSKSGVRL-VRGIVKDVDSQKLILN----DGTE----VPYGLLVWSTGVGPSTLVKSL- 342
S +++ +K V ++ + + DG++ +PYGLLVW+ G L K L
Sbjct: 318 LFDSSHIKIRTNTALKKVTAENIHVEVKNPDGSKQEEVIPYGLLVWAGGNRARPLTKKLM 377
Query: 343 DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 400
+ + R G +DE+L++ +D+FA+GDC+ T AQVA +QG YL
Sbjct: 378 EGSEEQNNRRGLVVDEYLKLKGYKDIFALGDCT-------HTAYAPTAQVASQQGAYLGQ 430
Query: 401 LLNRIGKAGGGRANSAKDMELGD----------------------PFVYRHLGSMATIGR 438
L N++G + + + + LGD PF Y H GS+A +G
Sbjct: 431 LFNKLGSLNFEKPSEDRHIALGDEMDSSTLISLANEKHASTKVFLPFKYSHQGSLAYVGH 490
Query: 439 YKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISR 498
KA+ D+ K L +G L++ WRS YL+ + S RNR V ++W +FGRDIS
Sbjct: 491 EKAIADIEVPWFGKQLHASGALAFYFWRSVYLSELYSLRNRTNVTLDWIRVKLFGRDISS 550
Query: 499 I 499
+
Sbjct: 551 L 551
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Catalyzes the oxidation of NADH. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
| >sp|O43090|NDH2_SCHPO Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.15c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 251/477 (52%), Gaps = 64/477 (13%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI- 120
K +VVLGSGW +K +D SLY++ VSPR+H +FTP+L S VGTL S+ EPI
Sbjct: 90 KKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIV 149
Query: 121 ----ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+I P S + C IDT V T+ E I YD LV
Sbjct: 150 ALFKGKIDP-------SNIHQAECTAIDTSAKKVTIRGTTEANEGKEAV---IPYDTLVF 199
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV---PGISEEEKSRLLHC 233
A+GA TFGI GV+++ FL+E A+++ ++ +L V +S EE++RLLH
Sbjct: 200 AIGAGNQTFGIQGVRDHGCFLKEAGDAKKVFNRIF--EILEQVRFNKDLSPEERARLLHI 257
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
VVGGGPTG+EF+ E+ DFI DV+ + ++ IHVTLIEA +L F L Y
Sbjct: 258 TVVGGGPTGMEFAAEMQDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKSLITYTEN 317
Query: 293 QLSKSGVRLV-RGIVKDVDSQKLILN----DGT----EVPYGLLVWSTGVGPSTLVKSL- 342
++++ + +VKDV+ + LI+ DG+ E+PYG+LVW+ G+ L ++L
Sbjct: 318 LFKNLNIKIMTKTVVKDVNEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITARPLTRTLM 377
Query: 343 -DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 399
+P+ G R G +DE+ RV V +++AVGDC+ + LPA AQVA +QG +L
Sbjct: 378 SSIPEQSGARKGLIVDEFFRVKGVPEMYAVGDCAF-------SGLPATAQVANQQGAWLA 430
Query: 400 SLLNRIGKAG----------------------GGRANSAKDMELGDPFVYRHLGSMATIG 437
LN GK G + ++L +PF Y H G++A +G
Sbjct: 431 KNLNVEGKKFALHERIQALEKQLGEKEAPSQVAGLKQQVEQLKL-EPFKYHHQGALAYVG 489
Query: 438 RYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGR 494
KA+ DL+ K L L G + WR AYL ++S R++F V ++W T +FGR
Sbjct: 490 DEKAIADLKLPFMKKMLPLQGIVGHTFWRLAYLNELISARSQFMVLIDWLKTRLFGR 546
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Catalyzes the oxidation of NADH. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
| >sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 177/488 (36%), Positives = 269/488 (55%), Gaps = 51/488 (10%)
Query: 40 DASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99
+A+PST Q+ Q S P + K +V+LGSGW L+K +DT+LY+VV VSPRN+ +F
Sbjct: 93 EANPST-QVPQ-SDTFPNGSKRKT-LVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLF 149
Query: 100 TPLLASTCVGTLEFRSVAEPIARIQPAISREPGS-YFFLSHCAGIDTDNHVVHCETVTDE 158
TPLL ST VGT+E +S+ EP+ I R G +++ + +D +N + ++
Sbjct: 150 TPLLPSTPVGTIELKSIVEPVRTIA---RRSHGEVHYYEAEAYDVDPENKTIKVKSSAKN 206
Query: 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218
+ + YD LV+ +GA+ +TFG GV E ++FL+E+ AQEIR K++ ++ +
Sbjct: 207 ----NDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAA 262
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NE 277
+ E++RLL VVVGGGPTGVEF+ EL D++ +D+R+ + I VTL+EA
Sbjct: 263 SLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPELSKEIKVTLVEALPN 322
Query: 278 ILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDG----TEVPYGLLVWSTG 332
IL+ FD L YA + + L ++ +VK VD+ + G +PYG+LVW+TG
Sbjct: 323 ILNMFDKYLVDYAQDLFKEEKIDLRLKTMVKKVDATTITAKTGDGDIENIPYGVLVWATG 382
Query: 333 VGPSTLVKSL--DLPKSPGGR-IGIDEWLRVPSVQ-DVFAVGDCSGYLESTGKTVLPAL- 387
P + K+L L + R + ID L++ + +FA+GDC T P L
Sbjct: 383 NAPREVSKNLMTKLEEQDSRRGLLIDNKLQLLGAKGSIFAIGDC---------TFHPGLF 433
Query: 388 --AQVAERQGKYL---FSLLNRIGKAGGGRANSAKDMELG-------------DPFVYRH 429
AQVA ++G+YL F +I + ++ D E+ + F Y H
Sbjct: 434 PTAQVAHQEGEYLAQYFKKAYKIDQLNWKMTHAKDDSEVARLKNQIVKTQSQIEDFKYNH 493
Query: 430 LGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATT 489
G++A IG KA+ DL E+K LAG ++L W+SAYL +S+RNR VA++WA
Sbjct: 494 KGALAYIGSDKAIADLAVG-EAK-YRLAGSFTFLFWKSAYLAMCLSFRNRVLVAMDWAKV 551
Query: 490 FVFGRDIS 497
+ GRD S
Sbjct: 552 YFLGRDSS 559
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External NADH dehydrogenase required for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. With NDE2, performes the mitochondrial oxidation of cytosolic NADH under these growth conditions. Regulates the mitochondrial glycerol-3-phosphate dehydrogenase, GUT2, also involved in cytosolic NADH oxydation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
| >sp|F2Z699|NDH2_YARLI External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 248/481 (51%), Gaps = 55/481 (11%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVLGSGW +K +DTS Y+V+ VSPRN+ +FTPLL S GT+E RS+ EPI
Sbjct: 112 KKTLVVLGSGWGSVSFLKKLDTSNYNVIVVSPRNYFLFTPLLPSCPTGTIEHRSIMEPIR 171
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181
I ++ + + ID + +V + E E K +I +D LV+ +GA
Sbjct: 172 GI--IRHKQAECQYLEADATKIDHEKRIVTIRSAVSENSKEEVIK-EIPFDYLVVGVGAM 228
Query: 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241
+STFGI GV+ENA FL+E+ AQ+IRR L+ + + E K RLLH VVVGGGPT
Sbjct: 229 SSTFGIPGVQENACFLKEIPDAQQIRRTLMDCIEKAQFEKDPEVRK-RLLHTVVVGGGPT 287
Query: 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVR 300
GVEF+ EL DF D+R+ ++D VTL+EA +L SF +L Y S +
Sbjct: 288 GVEFAAELQDFFEDDLRKWIPDIRDDFKVTLVEALPNVLPSFSKKLIDYTEKTFSDEKIS 347
Query: 301 -LVRGIVKDVDSQ----KLILNDGT----EVPYGLLVWSTGVGPSTLVKSL--DLPKSPG 349
L + +VK VD + DGT E+PYG LVW+TG +V+ L +P G
Sbjct: 348 ILTKTMVKSVDENVIRAEQTKGDGTKETLEMPYGTLVWATGNTVRPVVRELMSKIPAQKG 407
Query: 350 GRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407
R G ++E+L V + ++A+GDCS T AQVA ++G YL +LLN I K
Sbjct: 408 SRRGLLVNEYLVVEGTEGIWALGDCSA-------TKYAPTAQVASQEGSYLANLLNGIAK 460
Query: 408 AGG-------------------GRANSAKDMELGD----------PFVYRHLGSMATIGR 438
R N +E PF Y H GS+A IG
Sbjct: 461 TEDLNNEITNLEKQSEHTFDEQERKNIFAQLESKSRKLRRSRAMLPFEYSHQGSLAYIGS 520
Query: 439 YKALVDLRQNKES-KGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDIS 497
+A+ DL N S G +++ WRSAY++ S RN+ V ++W VFGRDIS
Sbjct: 521 DRAVADLSFNFWGIMNWSSGGTMTYYFWRSAYVSMCFSMRNKILVCIDWMKVRVFGRDIS 580
Query: 498 R 498
R
Sbjct: 581 R 581
|
Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons accross the inner mitochondrial membrane. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 9 |
| >sp|Q07500|NDH2_YEAST External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 179/501 (35%), Positives = 271/501 (54%), Gaps = 52/501 (10%)
Query: 34 LSHFTTDASPSTVQLTQYSGLGPTK--------AN--EKPRVVVLGSGWAGCRLMKGIDT 83
L+ +TT A V Y P K AN +K +V+LG+GW L+K +DT
Sbjct: 59 LTFYTTLAGTLYVSYELYKESNPPKQVPQSTAFANGLKKKELVILGTGWGAISLLKKLDT 118
Query: 84 SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAG 142
SLY+V VSPR+ +FTPLL ST VGT+E +S+ EP+ I R PG ++ +
Sbjct: 119 SLYNVTVVSPRSFFLFTPLLPSTPVGTIEMKSIVEPVRSIA---RRTPGEVHYIEAEALD 175
Query: 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHH 202
+D V ++V+++ E + +SYD LV+++GA+ +TF I GV NA FL+E+
Sbjct: 176 VDPKAKKVMVQSVSED----EYFVSSLSYDYLVVSVGAKTTTFNIPGVYGNANFLKEIED 231
Query: 203 AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262
AQ IR KL+ + + +++ E+ RLL VVVGGGPTGVEF+ EL D+I +D+R+
Sbjct: 232 AQNIRMKLMKTIEQASSFPVNDPERKRLLTFVVVGGGPTGVEFAAELQDYINQDLRKWMP 291
Query: 263 HVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKL-ILNDG 319
+ + V LIEA IL+ FD L YA ++ + L V VK V+ + L +G
Sbjct: 292 DLSKEMKVILIEALPNILNMFDKTLIKYAEDLFARDEIDLQVNTAVKVVEPTYIRTLQNG 351
Query: 320 ---TEVPYGLLVWSTGVGPSTLVKSL--DLPKSPGGR-IGIDEWLR-VPSVQDVFAVGDC 372
T++ YG+LVW+TG P K+L +P+ R + I++ L + S ++A+GDC
Sbjct: 352 QTNTDIEYGMLVWATGNEPIDFSKTLMSRIPEQTNRRGLLINDKLELLGSENSIYAIGDC 411
Query: 373 SGYLESTGKTVLPALAQVAERQGKYLFSLLNR---IGKAGGGRANSAKDMELG------- 422
+ + TG P AQVA ++G+YL +L++ I + NS + E+
Sbjct: 412 TAH---TG--FFPT-AQVAHQEGEYLAKILDKKLQIEQLEWDMLNSTDETEVSRLQKEVN 465
Query: 423 ------DPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSW 476
D F Y+H+G++A IG A+ DL S L G ++L W+SAYL +S
Sbjct: 466 LRKSKLDKFNYKHMGALAYIGSETAIADLHMGDSS--YQLKGMFAFLFWKSAYLAMCLSI 523
Query: 477 RNRFYVAVNWATTFVFGRDIS 497
RNR +A++W + GRD S
Sbjct: 524 RNRILIAMDWTKVYFLGRDSS 544
|
External NADH dehydrogenase required for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. With NDE1, performes the mitochondrial oxidation of cytosolic NADH under these growth conditions. Regulates the mitochondrial glycerol-3-phosphate dehydrogenase, GUT2, also involved in cytosolic NADH oxydation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
| >sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 195/319 (61%), Gaps = 14/319 (4%)
Query: 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQ 124
VVVLG+GWAG +K +D + YDV VSP+N+ FTPLL S GT+E RS+ E + I
Sbjct: 52 VVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVESVRNIT 111
Query: 125 PAISREPGSYFFLSHCAGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEAS 183
+ E + + C ID N VHC V D+ + +F + YD L++A+GA+ +
Sbjct: 112 KKKNGE--IELWEADCFKIDHVNQKVHCRPVFKDDPEASQ--EFSLGYDYLIVAVGAQVN 167
Query: 184 TFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 243
TFG GV EN FL+EV AQ IRR ++ + +PG++EE++ R LH V+VGGGPTGV
Sbjct: 168 TFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGGGPTGV 227
Query: 244 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLV 302
EF+ EL DFI+ D+ + Y VK+ + +TLI++ + IL++FD+R+ +A + ++ G+ +
Sbjct: 228 EFAAELHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRDGIDVQ 287
Query: 303 RGI----VKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR--IGI 354
G+ V D D + + G +P+GL++WSTGVG ++ GGR +
Sbjct: 288 TGMRVMSVTDKDITVKVKSSGELVSIPHGLILWSTGVGTRPVISDFMEQVGQGGRRAVAT 347
Query: 355 DEWLRVPSVQDVFAVGDCS 373
+EWL+V ++V+AVGDC+
Sbjct: 348 NEWLQVTGCENVYAVGDCA 366
|
Calcium-dependent NAD(P)H dehydrogenase. Binds calcium ions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana GN=NDB3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 213/365 (58%), Gaps = 17/365 (4%)
Query: 39 TDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98
++A+PS YS G K +VV+LG+GWAG +K ++ S Y+V +SPRN+
Sbjct: 38 SEANPS------YSNNGVETKTRKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFA 91
Query: 99 FTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158
FTPLL S GT+E RSV EPI I A + F + C ID + V+C +
Sbjct: 92 FTPLLPSVTCGTVEARSVVEPIRNI--ARKQNVEMSFLEAECFKIDPGSKKVYCRS-KQG 148
Query: 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218
+ + +F + YD LVIA GA+++TF I GV+EN FL+EV AQ IR ++ + +
Sbjct: 149 VNSKGKKEFDVDYDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKAS 208
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANE 277
+PG++E+E+ R+LH VVVGGGPTGVEF+ EL DF+ D+ + Y K+ + +TL+E A+
Sbjct: 209 LPGLNEQERKRMLHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAADH 268
Query: 278 ILSSFDDRLRHYATTQLSKSGVRLVRG--IVKDVD---SQKLILNDGTEVPYGLLVWSTG 332
IL+ FD R+ +A + ++ G+ + G +VK D S K + + +PYG++VWSTG
Sbjct: 269 ILTMFDKRITEFAEEKFTRDGIDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTG 328
Query: 333 VGPSTLVKSLDLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 390
+G ++K G R + DEWLRV +++A+GDC+ + + A+ +
Sbjct: 329 IGTRPVIKDFMKQIGQGNRRALATDEWLRVEGCDNIYALGDCATINQRKVMEDIAAIFKK 388
Query: 391 AERQG 395
A+++
Sbjct: 389 ADKEN 393
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| 118488127 | 488 | unknown [Populus trichocarpa] | 0.977 | 1.0 | 0.807 | 0.0 | |
| 449450824 | 505 | PREDICTED: alternative NAD(P)H dehydroge | 1.0 | 0.988 | 0.780 | 0.0 | |
| 357490831 | 566 | hypothetical protein MTR_5g071250 [Medic | 0.981 | 0.865 | 0.769 | 0.0 | |
| 356500874 | 485 | PREDICTED: probable NADH dehydrogenase-l | 0.971 | 1.0 | 0.777 | 0.0 | |
| 297826393 | 504 | NDA2 H dehydrogenase 2 [Arabidopsis lyra | 1.0 | 0.990 | 0.779 | 0.0 | |
| 356553084 | 485 | PREDICTED: probable NADH dehydrogenase-l | 0.971 | 1.0 | 0.771 | 0.0 | |
| 21536893 | 510 | putative NADH dehydrogenase (ubiquinone | 0.983 | 0.962 | 0.781 | 0.0 | |
| 224104264 | 452 | predicted protein [Populus trichocarpa] | 0.903 | 0.997 | 0.851 | 0.0 | |
| 297843508 | 509 | hypothetical protein ARALYDRAFT_887930 [ | 0.981 | 0.962 | 0.775 | 0.0 | |
| 15227684 | 508 | NADH dehydrogenase [Arabidopsis thaliana | 0.975 | 0.958 | 0.784 | 0.0 |
| >gi|118488127|gb|ABK95883.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/499 (80%), Positives = 443/499 (88%), Gaps = 11/499 (2%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MSLF++L++ T+KS P + P N + T LSHFTTD T+Y+GL PTK +
Sbjct: 1 MSLFRNLIQLSTSKS----KPLLQNP-NFLFTSLSHFTTDTP------TRYAGLEPTKGD 49
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKGIDT LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI
Sbjct: 50 EKPRVVVLGSGWAGCRLMKGIDTDLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 109
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
RIQPAIS+ PGSYFFL++C +DT+ H+VHCETVTD L T++PW+FKISYDKL+IALGA
Sbjct: 110 GRIQPAISKAPGSYFFLANCTSLDTEKHMVHCETVTDGLDTVDPWRFKISYDKLIIALGA 169
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
EA TFGIHGVKE+A FLREV HAQEIRRKLLLNLMLSD+PG+SEEEKSRLLHCVVVGGGP
Sbjct: 170 EALTFGIHGVKEHAIFLREVRHAQEIRRKLLLNLMLSDMPGLSEEEKSRLLHCVVVGGGP 229
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI++DVRQ YSHVKDYIHVTLIEANEILSSFDD LR YAT QL+KSGV
Sbjct: 230 TGVEFSGELSDFILKDVRQTYSHVKDYIHVTLIEANEILSSFDDSLRRYATKQLTKSGVH 289
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV 360
LVRGIVKDV QKLIL DGTEVPYGLLVWSTGVGPS+ VKSL+L KSPGGRIGIDEWLRV
Sbjct: 290 LVRGIVKDVKPQKLILTDGTEVPYGLLVWSTGVGPSSFVKSLELSKSPGGRIGIDEWLRV 349
Query: 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDME 420
PSV DVFA+GDCSG+LESTGK VLPALAQVAERQGKYL LLN+IGK GGGR S +++E
Sbjct: 350 PSVPDVFAIGDCSGFLESTGKPVLPALAQVAERQGKYLAKLLNKIGKDGGGRRTSGEEVE 409
Query: 421 LGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRF 480
LGDPFVYRHLGSMATIGRYKALVDLRQ+KE+KGL+L GF SW +WRSAYLTRV+SWRNRF
Sbjct: 410 LGDPFVYRHLGSMATIGRYKALVDLRQSKEAKGLALKGFASWFIWRSAYLTRVISWRNRF 469
Query: 481 YVAVNWATTFVFGRDISRI 499
YVA+NWATTFVFGRDISRI
Sbjct: 470 YVAINWATTFVFGRDISRI 488
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450824|ref|XP_004143162.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus] gi|449523139|ref|XP_004168582.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/505 (78%), Positives = 445/505 (88%), Gaps = 6/505 (1%)
Query: 1 MSLFKHLLR-NPTAKSYSYSSPSIIMPSNLILT-CLSHFTT----DASPSTVQLTQYSGL 54
M+ F++L + +P+ ++P +PS T LSHF++ DAS S L++ GL
Sbjct: 1 MAWFRNLNKLSPSKPPLRSTNPHPFLPSTTPFTFLLSHFSSQPISDASASAEALSRPPGL 60
Query: 55 GPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFR 114
GPT + EKPRVVVLGSGWAGCRLMKG+DTS+YDV CVSPRNHMVFTPLLASTCVGTLEFR
Sbjct: 61 GPTASGEKPRVVVLGSGWAGCRLMKGLDTSIYDVACVSPRNHMVFTPLLASTCVGTLEFR 120
Query: 115 SVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174
SVAEPI RIQP+ISREPGSYFFL++C ++TD H V CETVTD TLEPW+FK+SYDKL
Sbjct: 121 SVAEPIGRIQPSISREPGSYFFLANCTSVNTDEHSVQCETVTDGSNTLEPWRFKLSYDKL 180
Query: 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234
+IALG++ TFGIHGVKE+A FLREV+HAQEIRRKLLLNLMLSDVPGIS EEK RLLHCV
Sbjct: 181 IIALGSQPLTFGIHGVKEHAIFLREVYHAQEIRRKLLLNLMLSDVPGISVEEKRRLLHCV 240
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294
VVGGGPTGVEFSGELSDFI++DV QRYSHVKDYI VTLIEANEILSSFDDRLRHYAT QL
Sbjct: 241 VVGGGPTGVEFSGELSDFIIKDVTQRYSHVKDYIQVTLIEANEILSSFDDRLRHYATKQL 300
Query: 295 SKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGI 354
+KSGV+LVRGIVKDV Q +ILNDG+EVPYGLLVWSTGVGPS V SL++PKSPGGRIGI
Sbjct: 301 TKSGVQLVRGIVKDVKPQSIILNDGSEVPYGLLVWSTGVGPSPFVNSLEVPKSPGGRIGI 360
Query: 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRAN 414
DEWLRVP+V+DVFA+GDCSG+LESTGK VLPALAQVAERQGKYL +LLN+IGK GGGRA
Sbjct: 361 DEWLRVPAVEDVFAIGDCSGFLESTGKQVLPALAQVAERQGKYLAALLNKIGKEGGGRAG 420
Query: 415 SAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVV 474
S K++ELGDPFVY+HLGSMATIGRYKALVDLRQ+KE+KG+S+AGFLSW VWRSAYLTRV+
Sbjct: 421 SGKNLELGDPFVYKHLGSMATIGRYKALVDLRQSKEAKGISMAGFLSWFVWRSAYLTRVI 480
Query: 475 SWRNRFYVAVNWATTFVFGRDISRI 499
SWRNRFYVAVNWATTF+FGRDISRI
Sbjct: 481 SWRNRFYVAVNWATTFIFGRDISRI 505
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357490831|ref|XP_003615703.1| hypothetical protein MTR_5g071250 [Medicago truncatula] gi|355517038|gb|AES98661.1| hypothetical protein MTR_5g071250 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/504 (76%), Positives = 445/504 (88%), Gaps = 14/504 (2%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLI--------LTCLSHFTTDASPSTVQLTQYS 52
MSLF++L +KSY +++ + P N LT LS F+T ++P + +Y+
Sbjct: 1 MSLFRNL-----SKSYFFTTKQLFKPPNSTNPSHLFPSLTLLSRFST-STPGSTAPVRYA 54
Query: 53 GLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLE 112
LGPTK +EKPRVVVLG+GWAGCR MKG+D+++YD+VCVSPRNHMVFTPLLASTCVGTLE
Sbjct: 55 ALGPTKPHEKPRVVVLGTGWAGCRFMKGLDSNIYDIVCVSPRNHMVFTPLLASTCVGTLE 114
Query: 113 FRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
FRSVAEP+ARIQP IS+EPGS+FFL++C GI+ D H V CETVT+ +TL+PWKF ISYD
Sbjct: 115 FRSVAEPVARIQPTISKEPGSFFFLANCTGINADKHEVQCETVTEGTQTLDPWKFTISYD 174
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232
KLVIALGA+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGISEEEK RLLH
Sbjct: 175 KLVIALGAQPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGISEEEKKRLLH 234
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
CVVVGGGPTGVEFSGELSDFIMRDVRQRY+HVKDYIHVTLIEANEILSSFDDRLRHYAT
Sbjct: 235 CVVVGGGPTGVEFSGELSDFIMRDVRQRYAHVKDYIHVTLIEANEILSSFDDRLRHYATN 294
Query: 293 QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRI 352
QL+KSGVRLVRGIVKDV +K+ILNDGTEVPYGLLVWSTGVGPS + SLDLPKSPGGRI
Sbjct: 295 QLTKSGVRLVRGIVKDVQEKKIILNDGTEVPYGLLVWSTGVGPSPFIHSLDLPKSPGGRI 354
Query: 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGR 412
GIDEWLRVPSVQD+F++GDCSG++ESTGK LPALAQVAERQGKYL +LLN++G+A GGR
Sbjct: 355 GIDEWLRVPSVQDIFSIGDCSGFVESTGKPTLPALAQVAERQGKYLAALLNKVGEANGGR 414
Query: 413 ANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTR 472
ANS KD++LG+ FVY+HLGSMAT+G YKALVDLRQNK++KGLSLAGFLSW VWRSAYLTR
Sbjct: 415 ANSMKDIDLGNQFVYKHLGSMATVGSYKALVDLRQNKDAKGLSLAGFLSWFVWRSAYLTR 474
Query: 473 VVSWRNRFYVAVNWATTFVFGRDI 496
V+SWRNRFYVA+NWATTFVFGRDI
Sbjct: 475 VISWRNRFYVAINWATTFVFGRDI 498
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500874|ref|XP_003519255.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/499 (77%), Positives = 443/499 (88%), Gaps = 14/499 (2%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MS +HL S +SS +I S T LS F+T +P+ +++GLGPT+A+
Sbjct: 1 MSWLRHL-------SSKFSSTTIT--STRRFTSLSRFSTSTAPA-----RHAGLGPTQAH 46
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKG+DT++YDVVCVSPRNHMVFTPLLASTCVGTLEFR+VAEPI
Sbjct: 47 EKPRVVVLGSGWAGCRLMKGLDTAIYDVVCVSPRNHMVFTPLLASTCVGTLEFRTVAEPI 106
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
ARIQPAISREPGSYFFL++C ID DNHVVHCE+VT+ + +PW+F +SYDKLVIALGA
Sbjct: 107 ARIQPAISREPGSYFFLANCTAIDADNHVVHCESVTEGAQAPDPWRFTVSYDKLVIALGA 166
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGI EEEK RLLHCVVVGGGP
Sbjct: 167 QPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGIEEEEKQRLLHCVVVGGGP 226
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI+RDVRQRY+HVKDYIHVTLIEANEILSSFD RLR YAT QL+KSGVR
Sbjct: 227 TGVEFSGELSDFIVRDVRQRYAHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR 286
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV 360
LVRGIVKDV+ +K+ILNDGTEVPYGLLVWSTGVGPS +++SLDLPK+PGGRIGIDEWLRV
Sbjct: 287 LVRGIVKDVEEKKIILNDGTEVPYGLLVWSTGVGPSAIIRSLDLPKAPGGRIGIDEWLRV 346
Query: 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDME 420
P+V+D+F++GDCSG++ESTGKT LPALAQVAERQGKYL LLN+IGKA GGRANSAKD++
Sbjct: 347 PTVEDIFSIGDCSGFVESTGKTPLPALAQVAERQGKYLGILLNKIGKANGGRANSAKDVD 406
Query: 421 LGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRF 480
GD FVY+H+GSMA+IG YKALVDLRQNKE KGLSLAGF+SW +WRSAYLTRV+SWRNRF
Sbjct: 407 FGDQFVYKHMGSMASIGSYKALVDLRQNKEGKGLSLAGFVSWFIWRSAYLTRVISWRNRF 466
Query: 481 YVAVNWATTFVFGRDISRI 499
YVA+NWATT VFGRDISRI
Sbjct: 467 YVAINWATTLVFGRDISRI 485
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826393|ref|XP_002881079.1| NDA2 H dehydrogenase 2 [Arabidopsis lyrata subsp. lyrata] gi|297326918|gb|EFH57338.1| NDA2 H dehydrogenase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/504 (77%), Positives = 439/504 (87%), Gaps = 5/504 (0%)
Query: 1 MSLFKHLLR-NPTAKSYS---YSSPSIIMPSNLILTCLSHFTTDAS-PSTVQLTQYSGLG 55
M L K+L R +PT+ S S+ S + S + + A P+ V +QY+GL
Sbjct: 1 MFLIKNLTRISPTSSSIVTRFRSTGSYTLASRFCTASETQIQSPAKIPNGVDRSQYAGLA 60
Query: 56 PTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
PT+ EKPRVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPLLASTCVGTLEFRS
Sbjct: 61 PTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 120
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
VAEPI+RIQPAISREPGSYFFL++C+ +D + H VHCET+TD L TL+PWKFKI+YDKLV
Sbjct: 121 VAEPISRIQPAISREPGSYFFLANCSRLDAEAHEVHCETLTDGLNTLKPWKFKIAYDKLV 180
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
+A GAEASTFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGIS+EEK RLLHCVV
Sbjct: 181 VASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKKRLLHCVV 240
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295
VGGGPTGVEFSGELSDFIM+DVRQRYSHVKD IHVTLIEA +ILSSFDDRLR YA QL+
Sbjct: 241 VGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIHVTLIEARDILSSFDDRLRRYAIKQLN 300
Query: 296 KSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGID 355
KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS+ V+SL LPK P GRIGID
Sbjct: 301 KSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSSFVRSLGLPKDPTGRIGID 360
Query: 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANS 415
EW+RVPSVQDVFA+GDCSGYLE+TGK LPALAQVAER+GKYL +LLN IGKA GGRANS
Sbjct: 361 EWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVAEREGKYLANLLNEIGKANGGRANS 420
Query: 416 AKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVS 475
AK++ELG PFVY+HLGSMATIGRYKALVDLR++K++KG+S+ GF+SW +WRSAYLTRVVS
Sbjct: 421 AKEIELGAPFVYKHLGSMATIGRYKALVDLRESKDAKGISMTGFVSWFIWRSAYLTRVVS 480
Query: 476 WRNRFYVAVNWATTFVFGRDISRI 499
WRNRFYVA+NW TTFVFGRDISRI
Sbjct: 481 WRNRFYVAINWFTTFVFGRDISRI 504
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553084|ref|XP_003544888.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/499 (77%), Positives = 438/499 (87%), Gaps = 14/499 (2%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MS F+HL S +I S L+ L F+T +P +++GL PT+A+
Sbjct: 1 MSWFRHL---------STKFSAITTTSTHRLSLLPRFSTSTAP-----VRHAGLEPTQAH 46
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKG+DT +YDVVCVSPRNHMVFTPLLASTCVGTLEFR+VAEPI
Sbjct: 47 EKPRVVVLGSGWAGCRLMKGLDTQIYDVVCVSPRNHMVFTPLLASTCVGTLEFRTVAEPI 106
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
ARIQPAISREPGSYFFL++C ID DNHVVHCE+VT+ + +PW+F ISYDKLVIALGA
Sbjct: 107 ARIQPAISREPGSYFFLANCTAIDADNHVVHCESVTEGAQAPDPWRFTISYDKLVIALGA 166
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGI EEEK RLLHCVVVGGGP
Sbjct: 167 QPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGIEEEEKQRLLHCVVVGGGP 226
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI+RDVRQRY+HVKDYIHVTLIEANEILSSFD RLR YAT QL+KSGVR
Sbjct: 227 TGVEFSGELSDFIVRDVRQRYAHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR 286
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV 360
LVRGIVKDV+ +K+ILNDGTEVPYGLLVWSTGVGPS +++SLDLPK+PGGRIGIDEWLRV
Sbjct: 287 LVRGIVKDVEEKKIILNDGTEVPYGLLVWSTGVGPSAIIQSLDLPKAPGGRIGIDEWLRV 346
Query: 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDME 420
P+V+D+F++GDCSG++ESTGKT LPALAQVAERQGKYL LLN+IGKA GGRANSAKD++
Sbjct: 347 PTVEDIFSIGDCSGFVESTGKTPLPALAQVAERQGKYLAFLLNKIGKANGGRANSAKDVD 406
Query: 421 LGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRF 480
GD FVY+H+GSMA+IG YKALVDLRQ+KE KGLSLAGF+SW +WRSAYLTRV+SWRNRF
Sbjct: 407 FGDQFVYKHMGSMASIGSYKALVDLRQSKEGKGLSLAGFVSWFIWRSAYLTRVISWRNRF 466
Query: 481 YVAVNWATTFVFGRDISRI 499
YVA+NWATT VFGRDISRI
Sbjct: 467 YVAINWATTLVFGRDISRI 485
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21536893|gb|AAM61225.1| putative NADH dehydrogenase (ubiquinone oxidoreductase) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/494 (78%), Positives = 435/494 (88%), Gaps = 3/494 (0%)
Query: 6 HLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRV 65
++ RNP +SY+ SS +T D + ++ +Y GL PTK EKPRV
Sbjct: 20 NVFRNP--ESYTLSSRFCTALQKQQVTDTVQAKEDVV-NALEPQRYDGLAPTKEGEKPRV 76
Query: 66 VVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQP 125
+VLGSGWAGCR++KGIDTS+YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RIQP
Sbjct: 77 LVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRIQP 136
Query: 126 AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185
AISREPGSY+FL++C+ +D DNH VHCETVT+ TL+PWKFKI+YDKLV+A GAEASTF
Sbjct: 137 AISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAYDKLVLACGAEASTF 196
Query: 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 245
GI+GV ENA FLREVHHAQEIRRKLLLNLMLS+VPGI E+EK RLLHCVVVGGGPTGVEF
Sbjct: 197 GINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKRLLHCVVVGGGPTGVEF 256
Query: 246 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
SGELSDFIM+DVRQRYSHVKD I VTLIEA +ILSSFDDRLRHYA QL+KSGV+LVRGI
Sbjct: 257 SGELSDFIMKDVRQRYSHVKDDIRVTLIEARDILSSFDDRLRHYAIKQLNKSGVKLVRGI 316
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQD 365
VK+V QKLIL+DGTEVPYGLLVWSTGVGPS+ V+SLD PK PGGRIGIDEW+RVPSVQD
Sbjct: 317 VKEVKPQKLILDDGTEVPYGLLVWSTGVGPSSFVRSLDFPKDPGGRIGIDEWMRVPSVQD 376
Query: 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPF 425
VFA+GDCSGYLESTGK+ LPALAQVAER+GKYL +L N +GKAGGGRANSAK+MELG+PF
Sbjct: 377 VFAIGDCSGYLESTGKSTLPALAQVAEREGKYLTNLFNVMGKAGGGRANSAKEMELGEPF 436
Query: 426 VYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVN 485
VY+HLGSMATIGRYKALVDLR++KE KG+S+AGFLSW +WRSAYLTRVVSWRNRFYVA+N
Sbjct: 437 VYKHLGSMATIGRYKALVDLRESKEGKGISMAGFLSWFIWRSAYLTRVVSWRNRFYVAIN 496
Query: 486 WATTFVFGRDISRI 499
W TTFVFGRDISRI
Sbjct: 497 WLTTFVFGRDISRI 510
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104264|ref|XP_002313376.1| predicted protein [Populus trichocarpa] gi|222849784|gb|EEE87331.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/451 (85%), Positives = 417/451 (92%)
Query: 49 TQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV 108
T+Y+GL PTK +EKPRVVVLGSGWAGCRLMKGIDT LYDVVCVSPRNHMVFTPLLASTCV
Sbjct: 2 TRYAGLEPTKGDEKPRVVVLGSGWAGCRLMKGIDTDLYDVVCVSPRNHMVFTPLLASTCV 61
Query: 109 GTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFK 168
GTLEFRSVAEPI RIQPAIS+ PGSYFFL++C +DT+ H+VHCETVTD L T++PW+FK
Sbjct: 62 GTLEFRSVAEPIGRIQPAISKAPGSYFFLANCTSLDTEKHMVHCETVTDGLDTVDPWRFK 121
Query: 169 ISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228
ISYDKL+IALGAEA TFGIHGVKE+A FLREV HAQEIRRKLLLNLMLSD+PG+SEEEKS
Sbjct: 122 ISYDKLIIALGAEALTFGIHGVKEHAIFLREVRHAQEIRRKLLLNLMLSDMPGLSEEEKS 181
Query: 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH 288
RLLHCVVVGGGPTGVEFSGELSDFI++DVRQ YSHVKDYIHVTLIEANEILSSFDD LR
Sbjct: 182 RLLHCVVVGGGPTGVEFSGELSDFILKDVRQTYSHVKDYIHVTLIEANEILSSFDDSLRR 241
Query: 289 YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 348
YAT QL+KSGV LVRGIVKDV QKLIL DGTEVPYGLLVWSTGVGPS+ VKSL+L KSP
Sbjct: 242 YATKQLTKSGVHLVRGIVKDVKPQKLILTDGTEVPYGLLVWSTGVGPSSFVKSLELSKSP 301
Query: 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408
GGRIGIDEWLRVPSV DVFA+GDCSG+LESTGK VLPALAQVAERQGKYL LLN+IGK
Sbjct: 302 GGRIGIDEWLRVPSVPDVFAIGDCSGFLESTGKPVLPALAQVAERQGKYLAKLLNKIGKD 361
Query: 409 GGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSA 468
GGGR S +++ELGDPFVYRHLGSMATIGRYKALVDLRQ+KE+KGL+L GF SW +WRSA
Sbjct: 362 GGGRRTSGEEVELGDPFVYRHLGSMATIGRYKALVDLRQSKEAKGLALKGFASWFIWRSA 421
Query: 469 YLTRVVSWRNRFYVAVNWATTFVFGRDISRI 499
YLTRV+SWRNRFYVA+NWATTFVFGRDISRI
Sbjct: 422 YLTRVISWRNRFYVAINWATTFVFGRDISRI 452
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843508|ref|XP_002889635.1| hypothetical protein ARALYDRAFT_887930 [Arabidopsis lyrata subsp. lyrata] gi|297335477|gb|EFH65894.1| hypothetical protein ARALYDRAFT_887930 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/494 (77%), Positives = 434/494 (87%), Gaps = 4/494 (0%)
Query: 6 HLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRV 65
++ RNP + + S + + I T + + ++ +Y GL PTK EKPRV
Sbjct: 20 NVFRNPESYTLSSRFCTALQKQPEIETVQAKDVVNG----LEPQRYDGLAPTKEGEKPRV 75
Query: 66 VVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQP 125
+VLGSGWAGCRLMKGIDTS+YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RIQP
Sbjct: 76 LVLGSGWAGCRLMKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRIQP 135
Query: 126 AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185
AISREPGSY+FL++C+ +D DNH VHCETVT+ TL+PWKFKI+YDKLV+A GAEASTF
Sbjct: 136 AISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAYDKLVLACGAEASTF 195
Query: 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 245
GI+GV ENA FLREVHHAQEIRRKLLLNLMLS+VPGISE+EK RLLHCVVVGGGPTGVEF
Sbjct: 196 GINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGISEDEKKRLLHCVVVGGGPTGVEF 255
Query: 246 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
SGELSDFIM+DVRQRY+HVKD I VTLIEA +ILSSFDDRLR YA QL+KSGV+LVRGI
Sbjct: 256 SGELSDFIMKDVRQRYAHVKDDIRVTLIEARDILSSFDDRLRQYAIKQLNKSGVKLVRGI 315
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQD 365
VK+V QKLIL+DGTEVPYGLLVWSTGVGPS+ V+SLD PK PGGRIGIDEW+RVPSVQD
Sbjct: 316 VKEVKPQKLILDDGTEVPYGLLVWSTGVGPSSFVRSLDFPKDPGGRIGIDEWMRVPSVQD 375
Query: 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPF 425
VFA+GDCSGYLESTGK+ LPALAQVAER+GKYL +L N +GKAGGGRANSAK+MELG+PF
Sbjct: 376 VFAIGDCSGYLESTGKSTLPALAQVAEREGKYLANLFNVMGKAGGGRANSAKEMELGEPF 435
Query: 426 VYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVN 485
VY+HLGSMATIGRYKALVDLR++KE KG+S+AGF+SW +WRSAYLTRVVSWRNRFYVA+N
Sbjct: 436 VYKHLGSMATIGRYKALVDLRESKEGKGISMAGFVSWFIWRSAYLTRVVSWRNRFYVAIN 495
Query: 486 WATTFVFGRDISRI 499
W TTFVFGRDISRI
Sbjct: 496 WLTTFVFGRDISRI 509
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227684|ref|NP_180560.1| NADH dehydrogenase [Arabidopsis thaliana] gi|75318710|sp|O80874.1|NDA2_ARATH RecName: Full=Alternative NAD(P)H dehydrogenase 2, mitochondrial; Flags: Precursor gi|3420052|gb|AAC31853.1| putative NADH dehydrogenase (ubiquinone oxidoreductase) [Arabidopsis thaliana] gi|330253238|gb|AEC08332.1| NADH dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/493 (78%), Positives = 430/493 (87%), Gaps = 6/493 (1%)
Query: 8 LRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDAS-PSTVQLTQYSGLGPTKANEKPRVV 66
RN + S SY+ + S + + A P+ V +QYSGL PT+ EKPRVV
Sbjct: 21 FRNSGSSSLSYT-----LASRFCTAQETQIQSPAKIPNDVDRSQYSGLPPTREGEKPRVV 75
Query: 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPA 126
VLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RIQPA
Sbjct: 76 VLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRIQPA 135
Query: 127 ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186
ISREPGS+FFL++C+ +D D H VHCET+TD L TL+PWKFKI+YDKLVIA GAEASTFG
Sbjct: 136 ISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIAYDKLVIASGAEASTFG 195
Query: 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246
IHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGIS+EEK RLLHCVVVGGGPTGVEFS
Sbjct: 196 IHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKRRLLHCVVVGGGPTGVEFS 255
Query: 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIV 306
GELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSFDDRLR YA QL+KSGVR VRGIV
Sbjct: 256 GELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSFDDRLRRYAIKQLNKSGVRFVRGIV 315
Query: 307 KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366
KDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL LPK P GRIGIDEW+RVPSVQDV
Sbjct: 316 KDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSLGLPKDPTGRIGIDEWMRVPSVQDV 375
Query: 367 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFV 426
FA+GDCSGYLE+TGK LPALAQVAER+GKYL +LLN IGK GGRANSAK++ELG PFV
Sbjct: 376 FAIGDCSGYLETTGKPTLPALAQVAEREGKYLANLLNAIGKGNGGRANSAKEIELGVPFV 435
Query: 427 YRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNW 486
Y+HLGSMATIGRYKALVDLR++K++KG+S+ GF+SW +WRSAYLTRV+SWRNRFYVA+NW
Sbjct: 436 YKHLGSMATIGRYKALVDLRESKDAKGISMTGFVSWFIWRSAYLTRVISWRNRFYVAINW 495
Query: 487 ATTFVFGRDISRI 499
TTFVFGRDISRI
Sbjct: 496 FTTFVFGRDISRI 508
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| TAIR|locus:2045708 | 508 | NDA2 "AT2G29990" [Arabidopsis | 0.915 | 0.899 | 0.831 | 6.5e-209 | |
| TAIR|locus:2007427 | 510 | NDA1 "AT1G07180" [Arabidopsis | 0.901 | 0.882 | 0.835 | 2.2e-208 | |
| TAIR|locus:2123713 | 571 | NDB1 "AT4G28220" [Arabidopsis | 0.621 | 0.542 | 0.398 | 1.4e-76 | |
| TAIR|locus:2119667 | 580 | NDB3 "AT4G21490" [Arabidopsis | 0.641 | 0.551 | 0.398 | 5.9e-76 | |
| DICTYBASE|DDB_G0270104 | 451 | DDB_G0270104 "putative NADH de | 0.883 | 0.977 | 0.367 | 2.1e-75 | |
| TAIR|locus:2051431 | 582 | NDB4 "AT2G20800" [Arabidopsis | 0.609 | 0.522 | 0.396 | 1.1e-72 | |
| DICTYBASE|DDB_G0290197 | 654 | DDB_G0290197 "putative NADH de | 0.474 | 0.362 | 0.381 | 2.6e-72 | |
| ASPGD|ASPL0000060585 | 570 | ndiF [Emericella nidulans (tax | 0.671 | 0.587 | 0.372 | 2.3e-68 | |
| DICTYBASE|DDB_G0295661 | 584 | DDB_G0295661 "pyridine nucleot | 0.691 | 0.590 | 0.355 | 9.8e-68 | |
| UNIPROTKB|G4N3S3 | 518 | MGG_04999 "Uncharacterized pro | 0.645 | 0.621 | 0.344 | 1.6e-67 |
| TAIR|locus:2045708 NDA2 "AT2G29990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2020 (716.1 bits), Expect = 6.5e-209, P = 6.5e-209
Identities = 380/457 (83%), Positives = 418/457 (91%)
Query: 43 PSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL 102
P+ V +QYSGL PT+ EKPRVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPL
Sbjct: 52 PNDVDRSQYSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPL 111
Query: 103 LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162
LASTCVGTLEFRSVAEPI+RIQPAISREPGS+FFL++C+ +D D H VHCET+TD L TL
Sbjct: 112 LASTCVGTLEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTL 171
Query: 163 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGI 222
+PWKFKI+YDKLVIA GAEASTFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGI
Sbjct: 172 KPWKFKIAYDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGI 231
Query: 223 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF 282
S+EEK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSF
Sbjct: 232 SKEEKRRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSF 291
Query: 283 DDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342
DDRLR YA QL+KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL
Sbjct: 292 DDRLRRYAIKQLNKSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSL 351
Query: 343 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402
LPK P GRIGIDEW+RVPSVQDVFA+GDCSGYLE+TGK LPALAQVAER+GKYL +LL
Sbjct: 352 GLPKDPTGRIGIDEWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVAEREGKYLANLL 411
Query: 403 NRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSW 462
N IGK GGRANSAK++ELG PFVY+HLGSMATIGRYKALVDLR++K++KG+S+ GF+SW
Sbjct: 412 NAIGKGNGGRANSAKEIELGVPFVYKHLGSMATIGRYKALVDLRESKDAKGISMTGFVSW 471
Query: 463 LVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 499
+WRSAYLTRV+SWRNRFYVA+NW TTFVFGRDISRI
Sbjct: 472 FIWRSAYLTRVISWRNRFYVAINWFTTFVFGRDISRI 508
|
|
| TAIR|locus:2007427 NDA1 "AT1G07180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2015 (714.4 bits), Expect = 2.2e-208, P = 2.2e-208
Identities = 376/450 (83%), Positives = 417/450 (92%)
Query: 50 QYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVG 109
+Y GL PTK EKPRV+VLGSGWAGCR++KGIDTS+YDVVCVSPRNHMVFTPLLASTCVG
Sbjct: 61 RYDGLAPTKEGEKPRVLVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVG 120
Query: 110 TLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKI 169
TLEFRSVAEPI+RIQPAISREPGSY+FL++C+ +D DNH VHCETVT+ TL+PWKFKI
Sbjct: 121 TLEFRSVAEPISRIQPAISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKI 180
Query: 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 229
+YDKLV+A GAEASTFGI+GV ENA FLREVHHAQEIRRKLLLNLMLS+VPGI E+EK R
Sbjct: 181 AYDKLVLACGAEASTFGINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKR 240
Query: 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 289
LLHCVVVGGGPTGVEFSGELSDFIM+DVRQRYSHVKD I VTLIEA +ILSSFDDRLRHY
Sbjct: 241 LLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIRVTLIEARDILSSFDDRLRHY 300
Query: 290 ATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG 349
A QL+KSGV+LVRGIVK+V QKLIL+DGTEVPYG LVWSTGVGPS+ V+SLD PK PG
Sbjct: 301 AIKQLNKSGVKLVRGIVKEVKPQKLILDDGTEVPYGPLVWSTGVGPSSFVRSLDFPKDPG 360
Query: 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAG 409
GRIGIDEW+RVPSVQDVFA+GDCSGYLESTGK+ LPALAQVAER+GKYL +L N +GKAG
Sbjct: 361 GRIGIDEWMRVPSVQDVFAIGDCSGYLESTGKSTLPALAQVAEREGKYLANLFNVMGKAG 420
Query: 410 GGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAY 469
GGRANSAK+MELG+PFVY+HLGSMATIGRYKALVDLR++KE KG+S+AGFLSW +WRSAY
Sbjct: 421 GGRANSAKEMELGEPFVYKHLGSMATIGRYKALVDLRESKEGKGISMAGFLSWFIWRSAY 480
Query: 470 LTRVVSWRNRFYVAVNWATTFVFGRDISRI 499
LTRVVSWRNRFYVA+NW TTFVFGRDISRI
Sbjct: 481 LTRVVSWRNRFYVAINWLTTFVFGRDISRI 510
|
|
| TAIR|locus:2123713 NDB1 "AT4G28220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 129/324 (39%), Positives = 199/324 (61%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
++K +VVVLG+GWAG +K +D + YDV VSP+N+ FTPLL S GT+E RS+ E
Sbjct: 47 HKKKKVVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVES 106
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIAL 178
+ I + E + + C ID N VHC V D+ + +F + YD L++A+
Sbjct: 107 VRNITKKKNGE--IELWEADCFKIDHVNQKVHCRPVFKDDPEASQ--EFSLGYDYLIVAV 162
Query: 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238
GA+ +TFG GV EN FL+EV AQ IRR ++ + +PG++EE++ R LH V+VGG
Sbjct: 163 GAQVNTFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGG 222
Query: 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKS 297
GPTGVEF+ EL DFI+ D+ + Y VK+ + +TLI++ + IL++FD+R+ +A + ++
Sbjct: 223 GPTGVEFAAELHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRD 282
Query: 298 GVRLVRGI----VKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
G+ + G+ V D D + + G +P+GL++WSTGVG ++ GGR
Sbjct: 283 GIDVQTGMRVMSVTDKDITVKVKSSGELVSIPHGLILWSTGVGTRPVISDFMEQVGQGGR 342
Query: 352 --IGIDEWLRVPSVQDVFAVGDCS 373
+ +EWL+V ++V+AVGDC+
Sbjct: 343 RAVATNEWLQVTGCENVYAVGDCA 366
|
|
| TAIR|locus:2119667 NDB3 "AT4G21490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 132/331 (39%), Positives = 198/331 (59%)
Query: 51 YSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGT 110
YS G K +VV+LG+GWAG +K ++ S Y+V +SPRN+ FTPLL S GT
Sbjct: 44 YSNNGVETKTRKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFAFTPLLPSVTCGT 103
Query: 111 LEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKIS 170
+E RSV EPI I A + F + C ID + V+C + + + +F +
Sbjct: 104 VEARSVVEPIRNI--ARKQNVEMSFLEAECFKIDPGSKKVYCRS-KQGVNSKGKKEFDVD 160
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
YD LVIA GA+++TF I GV+EN FL+EV AQ IR ++ + + +PG++E+E+ R+
Sbjct: 161 YDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKASLPGLNEQERKRM 220
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHY 289
LH VVVGGGPTGVEF+ EL DF+ D+ + Y K+ + +TL+EA + IL+ FD R+ +
Sbjct: 221 LHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAADHILTMFDKRITEF 280
Query: 290 ATTQLSKSGVRLVRG--IVKDVD---SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344
A + ++ G+ + G +VK D S K + + +PYG++VWSTG+G ++K
Sbjct: 281 AEEKFTRDGIDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTGIGTRPVIKDFMK 340
Query: 345 PKSPGGR--IGIDEWLRVPSVQDVFAVGDCS 373
G R + DEWLRV +++A+GDC+
Sbjct: 341 QIGQGNRRALATDEWLRVEGCDNIYALGDCA 371
|
|
| DICTYBASE|DDB_G0270104 DDB_G0270104 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 174/474 (36%), Positives = 273/474 (57%)
Query: 28 NLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87
NLI+ ++ + + S+++ K E ++++LG GW +K +++ YD
Sbjct: 5 NLIIRGRNYISDHLTKSSLEKAIIRRQKRGKVIENEKLIILGCGWGSYSFLKNLNSIKYD 64
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAGIDTD 146
+ +SPRNH +FTPLL S+ VGTLEFRS+AEP+ +R+ + ++ + I+ +
Sbjct: 65 ITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVRT-----TRDINEFKYIQASVTSINPE 119
Query: 147 NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEI 206
N+ V V +P F++ YDKLVI +G+ +TFGI GV+ENA FL+E+HHA+EI
Sbjct: 120 NNSV---LVKSTFHNEKP--FEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREI 174
Query: 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK- 265
R+K++ + +P +S EE+ RLL V+VGGG TG+EF+ EL+DF D+ + + V
Sbjct: 175 RQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSEDLSRLFPFVPV 234
Query: 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTEVP 323
+ + + L+EA+ +ILS+FD +L A SG+ + VK+V +IL++G +P
Sbjct: 235 NEVKIILLEASGKILSTFDQKLVKKALINFRNSGIDVRTHSSVKEVLKDYVILDNGDRIP 294
Query: 324 YGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 383
YGLLVWSTG+G LVK+ K RI +D+ LRV + +VF+ GDC+ +E+
Sbjct: 295 YGLLVWSTGIGQHPLVKNSSFEKDSHDRIIVDDHLRVKNYSNVFSFGDCAN-VENKN--- 350
Query: 384 LPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALV 443
P AQVA + YL N + K N K PF ++ LG +A G+ ++
Sbjct: 351 YPPTAQVASQSAVYLAKEFNNLEKLN---PNPPK------PFAFKFLGLLAYTGKKSGIL 401
Query: 444 DLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDIS 497
++ L+GF+ ++ WRSAYLTR+ S R++ V +W T +FGRDIS
Sbjct: 402 ------QTDFFDLSGFIGFITWRSAYLTRLGSLRSKIQVPFDWMRTLIFGRDIS 449
|
|
| TAIR|locus:2051431 NDB4 "AT2G20800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 127/320 (39%), Positives = 191/320 (59%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVVLGSGW+G + ++ YDV VSPRN +FTPLL S GT+E RS+ EPI
Sbjct: 63 KKKVVVLGSGWSGYSFLSYLNNPNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSIVEPIR 122
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLE-PWKFKISYDKLVIALGA 180
+ R+ G + + C ID N +HC + E +L+ +F + YD L++A+GA
Sbjct: 123 ----GLMRKKGFEYKEAECVKIDASNKKIHCRS--KEGSSLKGTTEFDMDYDILILAVGA 176
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TF GV+E+A FL+E A IR ++ + +P ++EEE+ ++LH VVVGGGP
Sbjct: 177 KPNTFNTPGVEEHAYFLKEAEDALNIRHSVIDCFERASLPNLTEEERKKILHFVVVGGGP 236
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGV 299
TGVEFS EL DF+++DV + Y V+++ +TL+EA + IL+ FD R+ +A + + G+
Sbjct: 237 TGVEFSAELHDFLVQDVAKIYPKVQEFTKITLLEAGDHILNMFDKRITAFAEEKFQRDGI 296
Query: 300 RLVRG-IVKDVDSQKLILND---GTEV--PYGLLVWSTGVGPSTLVKSLDLPKSPGGR-- 351
L G +V V + ++ + G V PYG++VWSTG+G ++K G R
Sbjct: 297 DLKTGSMVVGVTADEISTKERETGKIVSEPYGMVVWSTGIGSRPVIKDFMQQIGQGQRRV 356
Query: 352 IGIDEWLRVPSVQDVFAVGD 371
+ DEWLRV V+A+GD
Sbjct: 357 LATDEWLRVEGCDGVYALGD 376
|
|
| DICTYBASE|DDB_G0290197 DDB_G0290197 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 2.6e-72, Sum P(3) = 2.6e-72
Identities = 93/244 (38%), Positives = 151/244 (61%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
N++ R++VLG+GWA ++ ID + Y++V VSPRN+ +FTP+L VG++E RS+ EP
Sbjct: 126 NKRERIIVLGTGWASLSFIQEIDLNKYEIVVVSPRNYFLFTPMLTEATVGSVEVRSIIEP 185
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
I R+ ++ P +Y + C ID N+ + ET D K KI YD+LV+A+G
Sbjct: 186 IRRVLSRLTSRPTTYIE-AECTNIDYVNNCIEIET-HDGSEA----KAKIQYDRLVVAVG 239
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
+ FG GV+E+ +L+E A +IR+K++ ++ PG SEEEK RLL +VVGGG
Sbjct: 240 SVPQCFGTKGVEEHCIYLKEAMDAHKIRQKIMDCFERANFPGTSEEEKKRLLSFLVVGGG 299
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSG 298
PT +E S L D+I D+ + + H+ Y +TL++ A+ +L++FD ++ +Y Q + G
Sbjct: 300 PTSIEGSSALYDYIKEDLSKMFPHLSKYPKITLVQSADHLLNTFDLKISNYTEKQFERIG 359
Query: 299 VRLV 302
+ ++
Sbjct: 360 IEVL 363
|
|
| ASPGD|ASPL0000060585 ndiF [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 134/360 (37%), Positives = 207/360 (57%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +V+LG+GW L+K +DT Y+VV +SPRN+ +FTPLL S G +E RS+ EPI
Sbjct: 103 KKTLVILGTGWGSVSLLKKLDTENYNVVVISPRNYFLFTPLLPSCTTGQVEHRSIMEPIR 162
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181
I ++ F+ + +D + +V+ E++ + ++ +D LV+ +GAE
Sbjct: 163 SILR--HKKAHVKFYEAEATKVDYEKRIVYISD-DSEIKG-DISHTEVPFDMLVMGVGAE 218
Query: 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241
+TFGI GVKEN+ FL+EV AQ IR++++ + + SEEE RLLH VVVGGGPT
Sbjct: 219 NATFGIKGVKENSCFLKEVGDAQRIRKRIMDCVETAMFKDQSEEEIKRLLHMVVVGGGPT 278
Query: 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVR 300
GVEF+GEL DF D+R+ +++ VTL+EA +L F +L Y + + +
Sbjct: 279 GVEFAGELQDFFEHDLRKWVPEIQENFRVTLVEALPNVLPMFSKQLIDYTESTFKEESIT 338
Query: 301 L-VRGIVKDVDSQ----KLILNDGTE----VPYGLLVWSTGVGPSTLVKSL--DLPKSPG 349
+ + +VK+V + ++ DGT+ +PYGLLVW+TG +V+ L LP
Sbjct: 339 IRTKTMVKNVTDKYIEAEVTKPDGTKELETIPYGLLVWATGNAIRPIVRDLMSQLPAQKN 398
Query: 350 GRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407
R G ++E+L V ++V+AVGDC+ + + T AQVA ++G +L L N + K
Sbjct: 399 SRRGLAVNEYLVVNGTENVWAVGDCA--ITNYAPT-----AQVASQEGAFLARLFNTMAK 451
|
|
| DICTYBASE|DDB_G0295661 DDB_G0295661 "pyridine nucleotide-disulphide oxidoreductase, NAD-binding region domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 131/368 (35%), Positives = 212/368 (57%)
Query: 54 LGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEF 113
L ++ ++P+VV+LG+GW ++ + T L+DV +SPRN+ +FTPLL GT+E
Sbjct: 104 LPESERKKRPKVVILGTGWGSLCFLRKLHTDLFDVTIISPRNYFLFTPLLVGGTTGTVEV 163
Query: 114 RSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173
RS+ EPI + E + F+ + C +D + V C ++ E +F++ YD
Sbjct: 164 RSIMEPIRKYCKRADAEDAT-FYEAECLSVDPVSKKVKCYD-NSAVKG-EVSEFELEYDH 220
Query: 174 LVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHC 233
L++ +GA+ TFGI GVKENA FL+E++ + IR K++ L + PG E+E RLL+
Sbjct: 221 LIVGVGADNQTFGIPGVKENACFLKEINDTRNIRDKIIDCLETASYPGQPEKEIDRLLNF 280
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 292
VVVGGGP+GVEF+ EL+DF+ D+ + Y K I+VTL+EA IL+ FD ++ +
Sbjct: 281 VVVGGGPSGVEFTAELNDFLQSDLLKTYPLAKR-INVTLVEALPHILTIFDKKIIDHVEK 339
Query: 293 QL-SKSGVRL-----VRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGP----STLVKS 341
+L S + ++ V G+ K++ + + + PYGLLVW+TG P + +++S
Sbjct: 340 RLQSSNNTKIWTKTAVVGVREKEITVKNTTTKEESIHPYGLLVWATGNTPRKITTQIMQS 399
Query: 342 LDLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 399
+ P R G +D++ RV ++++GD S + K L AQVA +QG+YL
Sbjct: 400 IG-PNIQNNRRGLVVDDYFRVAGTDGIWSIGDAS---INPSKP-LAQTAQVASQQGRYLG 454
Query: 400 SLLNRIGK 407
L N++ +
Sbjct: 455 RLFNQLAE 462
|
|
| UNIPROTKB|G4N3S3 MGG_04999 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 122/354 (34%), Positives = 187/354 (52%)
Query: 169 ISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLL-LNLMLSDVPGISEEEK 227
+ YDKLV+A+GA + TF I GV+E+A FLR+V A+ IR ++L L + P IS+E+K
Sbjct: 172 VPYDKLVVAVGAYSQTFNIDGVREHAHFLRDVGDARRIRLRILALFEHCASNPTISDEQK 231
Query: 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRL 286
LLH VVGGGPTG+EF+ EL D I D+ + Y + + +T+ + A +L FD L
Sbjct: 232 RELLHFAVVGGGPTGIEFAAELHDLIYEDLIKVYPGLVPLVRITVYDIAPAVLPMFDKEL 291
Query: 287 RHYATTQLSKSGVRL-----VRGIVKDVDSQKLILND-GT-EVPYGLLVWSTGVGPSTLV 339
YA ++ G+ + ++ I + D KL + + G EV G++VWSTG+ LV
Sbjct: 292 AGYAMELFNRRGIEIRTEHHLQAIRAEGDGLKLKIKEHGDQEVGAGMVVWSTGLMQHPLV 351
Query: 340 KSL-DLPKSPGGRIGIDEWLRVPSVQDVFAV---GDCSGYL-ESTGKTVLPALAQVAERQ 394
K L D G + LR+ S A+ G + E+ + P + V
Sbjct: 352 KKLVDNQVHDQGS-NPNSPLRLKSDPKTGAIVTDGHMRAQITENASRGQSPRMDDVFVI- 409
Query: 395 GKYLF----SLLNRIGKAGGGRA-NSAKDMELGD-----PFVYRHLGSMATIGRYKALVD 444
G F L + G+ +A AK + G+ PF +R+ G+MA +G ++A+
Sbjct: 410 GDCAFCEADQSLPKTGQVASQQAVYLAKALNSGNLDESKPFSFRNWGTMAYLGGWRAI-- 467
Query: 445 LRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISR 498
+S L G +W++WR+AYLT+ +S RN+ V W +++FGRDISR
Sbjct: 468 ----HQSSADELKGRAAWVLWRTAYLTKSLSVRNKIIVPFFWFISWLFGRDISR 517
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q55CD9 | NDH_DICDI | 1, ., 6, ., -, ., - | 0.3649 | 0.8837 | 0.9778 | yes | no |
| O80874 | NDA2_ARATH | 1, ., 6, ., -, ., - | 0.7849 | 0.9759 | 0.9586 | yes | no |
| Q8GWA1 | NDA1_ARATH | 1, ., 6, ., -, ., - | 0.7793 | 0.9839 | 0.9627 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.6.5.3 | 0.824 |
| 3rd Layer | 1.6.5 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 499 | |||
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 1e-164 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 1e-100 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 2e-37 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 9e-24 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 2e-20 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 2e-14 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 4e-14 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 3e-13 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 5e-12 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 6e-10 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 2e-07 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 3e-07 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 4e-07 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 4e-07 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 1e-06 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-06 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 3e-06 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 6e-06 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 6e-05 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 7e-05 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 8e-05 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 8e-05 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 8e-05 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 1e-04 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 2e-04 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 3e-04 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 3e-04 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 0.001 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 0.001 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 0.004 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 470 bits (1212), Expect = e-164
Identities = 197/446 (44%), Positives = 274/446 (61%), Gaps = 27/446 (6%)
Query: 56 PTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
T +KP VVVLG+GWAG ++ +D Y++ +SPRNHM+FTPLL T GTLEFRS
Sbjct: 4 RTARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRS 63
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
+ EP+ +PA+++ P + + + +D + V C V+ F + YDKLV
Sbjct: 64 ICEPV---RPALAKLP-NRYLRAVVYDVDFEEKRVKCGVVSKSNNANVN-TFSVPYDKLV 118
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
+A GA +TF I GV+E A FL+EV+HA+ IR++++ + + +P S EE+ RLLH VV
Sbjct: 119 VAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVV 178
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQL 294
VGGGPTGVEF+ EL+DF DVR + + VT++EA +E+L SFD LR Y +L
Sbjct: 179 VGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRL 238
Query: 295 SKSGVRLV-RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIG 353
+ GV + + VK+V ++++L DG +P GL+VWSTGVGP L K L + K+ GRI
Sbjct: 239 RRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRIS 298
Query: 354 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRA 413
+D+ LRV + +VFA+GDC+ + + LP LAQVA +QG YL N
Sbjct: 299 VDDHLRVKPIPNVFALGDCA----ANEERPLPTLAQVASQQGVYLAKEFN---------- 344
Query: 414 NSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRV 473
N K + PFVYR LGS+A +G Y A+V L L+GF + L WRSAYLT +
Sbjct: 345 NELKGKPMSKPFVYRSLGSLAYLGNYSAIVQL------GAFDLSGFKALLFWRSAYLTIL 398
Query: 474 VSWRNRFYVAVNWATTFVFGRDISRI 499
SWR++ YV VNWA T +FGRDI+R
Sbjct: 399 GSWRSKLYVLVNWAGTAIFGRDITRF 424
|
Length = 424 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = e-100
Identities = 147/442 (33%), Positives = 220/442 (49%), Gaps = 45/442 (10%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
K R+V+LG G+ G K + L ++ V R++ +FTPLL GTL +A P
Sbjct: 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIP 62
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
+ + + + F ID D V + + ISYD LV+ALG
Sbjct: 63 LRAL---LRKSGNVQFVQGEVTDIDRDAKKVTLADLGE-----------ISYDYLVVALG 108
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
+E + FGI G E A L+ + A +RR LL + EE+ LL V+VGGG
Sbjct: 109 SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS----QEEDDRALLTIVIVGGG 164
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSG 298
PTGVE +GEL++ + R ++ ++ + V L+EA IL F +L YA L K G
Sbjct: 165 PTGVELAGELAERLHRLLK-KFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223
Query: 299 VRLVRGI-VKDVDSQKLILNDG-TEVPYGLLVWSTGVGPSTLVKSL-DLPKSPGGRIGID 355
V ++ G V +V + L DG E+P +VW+ GV S L+K L L GR+ ++
Sbjct: 224 VEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVN 283
Query: 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANS 415
L+VP D+FA GDC+ +P AQ A +QG+Y + K
Sbjct: 284 PTLQVPGHPDIFAAGDCAAV---IDPRPVPPTAQAAHQQGEYAAKNIKARLK-------- 332
Query: 416 AKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVS 475
K ++ PF Y+ G++A++G + A+ DL G+ L GFL+WL+ R+AYL ++
Sbjct: 333 GKPLK---PFKYKDKGTLASLGDFSAVADL------GGVKLKGFLAWLLKRAAYLYYLLG 383
Query: 476 WRNRFYVAVNWATTFVFGRDIS 497
R+R VA+ W TT++ GR S
Sbjct: 384 IRSRLAVALYWLTTYLTGRRSS 405
|
Length = 405 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-37
Identities = 74/323 (22%), Positives = 116/323 (35%), Gaps = 53/323 (16%)
Query: 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVS--PRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
VV++G G AG + V + L + E +A +A
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181
+ + ID V + V +I+YDKL+IA GA
Sbjct: 61 LPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETG--------REITYDKLIIATGAR 112
Query: 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241
GI GV LR V + EI L VVVGGG
Sbjct: 113 PRIPGIPGV--EVATLRGVIDSDEILELL-----------------ELPKRVVVVGGGYI 153
Query: 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDD-----RLRHYATTQLS 295
G+E + L+ VT++E + +L+ DD L L
Sbjct: 154 GLELAAALAKLGK--------------EVTVVERRDRLLARADDEISAALLEKLEKLLLG 199
Query: 296 KSGVRLVRGIVKDVDSQK--LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRI 352
+ + +V +VK D + + L DG E+ +++ + G P+T L++ + G I
Sbjct: 200 VTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTELLEQAGVELDERGYI 259
Query: 353 GIDEWLRVPSVQDVFAVGDCSGY 375
+DE+LR SV ++A GD +
Sbjct: 260 VVDEYLRT-SVPGIYAAGDVAEG 281
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 9e-24
Identities = 76/328 (23%), Positives = 116/328 (35%), Gaps = 52/328 (15%)
Query: 86 YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDT 145
V ++P + ++ +L G + + R+ +R+ G+ F ++ GID
Sbjct: 26 VRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRL----ARQAGARFVIAEATGIDP 81
Query: 146 DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-------TFLR 198
D V L P +SYD L + +G+ G+ G + A FL
Sbjct: 82 DRRKVL-------LANRPP----LSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLA 130
Query: 199 EVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258
E S + VVGGG GVE + L R
Sbjct: 131 RWEALLE-----------------SADAPPGTKRLAVVGGGAAGVEIALAL--------R 165
Query: 259 QRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILN 317
+R VTLI +L F ++R L++ G+ + G V LIL
Sbjct: 166 RRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILA 225
Query: 318 DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 377
DG +P ++W+TG + LP G + +D L+ S VFA GDC +
Sbjct: 226 DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDC-AVIT 284
Query: 378 STGKTVLPALAQVAERQGKYLFSLLNRI 405
P A RQ L + L
Sbjct: 285 ---DAPRPKAGVYAVRQAPILAANLRAS 309
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 2e-20
Identities = 80/350 (22%), Positives = 120/350 (34%), Gaps = 67/350 (19%)
Query: 65 VVVLGSGWAGCRLMKGIDTSLYD----VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+V++G G AG + L ++ P+ PL + +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSL-----YVGGGIASLED 55
Query: 121 ARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
R P +R G ID +N VV + D +I YD LV+A G
Sbjct: 56 LRYPPRFNRATGIDVRTGTEVTSIDPENKVV---LLDDG---------EIEYDYLVLATG 103
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
A E LR A+ ++ E + VVVG G
Sbjct: 104 ARP-RPPPISDWEGVVTLRLREDAEALKGGA--------------EPPKDV---VVVGAG 145
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR-LRHYATTQLSKS 297
P G+E +R VTLIEA + D + L K
Sbjct: 146 PIGLE--------AAEAAAKR------GKKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191
Query: 298 GVRLVRGI-VKDVD-------SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP--KS 347
GV L+ G V V+ ++++ DG E+ L++ G P+ ++ + LP
Sbjct: 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLAL 251
Query: 348 PGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGK 396
GG + +DE DV+A GD TGK AL +A G+
Sbjct: 252 AGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR 301
|
Length = 415 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 38/238 (15%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
++ SYD L+++ GA I G+ + F LR + I++ + +
Sbjct: 87 TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYI-------------D 133
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SF 282
+ K + V++GGG G+E + +R+R +VTLI + IL+ F
Sbjct: 134 KNKVE--NVVIIGGGYIGIE--------MAEALRER------GKNVTLIHRSERILNKLF 177
Query: 283 DDRLRHYATTQLSKSGV--RLVRGIVKDVDSQKL-ILNDGTEVPYGLLVWSTGVGP-STL 338
D+ + +L K + RL + +++ + G +++ +TG+ P S L
Sbjct: 178 DEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSEL 237
Query: 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQG 395
K L G I ++E + SV +++A GD + T K LA A + G
Sbjct: 238 AKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMG 294
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 4e-14
Identities = 65/299 (21%), Positives = 107/299 (35%), Gaps = 78/299 (26%)
Query: 120 IARIQPAISREPGSYFFLSHCAGIDT--------DNHVVHCETVTDELRTLEPWKFKISY 171
+AR + G L G+D D H V E ++ T+
Sbjct: 86 LARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTV--EVTGEDKETIT-------A 136
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
D ++IA G+ G+ + + + L L ++P L
Sbjct: 137 DNIIIATGSRPRIPPGPGIDG-----ARILDSSDA-------LFLLELP-------KSL- 176
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYA 290
V+VGGG G+EF+ + + VT++E + IL D +
Sbjct: 177 --VIVGGGYIGLEFASVFAAL---GSK-----------VTVVERGDRILPGEDPEISKEL 220
Query: 291 TTQLSKSGVRL-----VRGIVKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLD 343
T QL K GV++ V + K D + L DG + ++ + G P+T L
Sbjct: 221 TKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT--DGLG 278
Query: 344 LPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397
L G I +D+ + +V ++A+GD G P LA VA +G+
Sbjct: 279 LENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG---------PMLAHVAMAEGRI 327
|
Length = 454 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 39/239 (16%)
Query: 167 FKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEE 225
F +YDKL+IA GA I + EN L+ + ++ L +E
Sbjct: 100 FNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELL------------KDE 147
Query: 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFD 283
E + V++G G G+E V K+ V +I+ + IL SFD
Sbjct: 148 EIKNI---VIIGAGFIGLEA-----------VEAAKHLGKN---VRIIQLEDRILPDSFD 190
Query: 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPST-L 338
+ +L ++GV L VK + + + ++ D E +++ +TGV P+T
Sbjct: 191 KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEF 250
Query: 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALAQVAERQGK 396
++ L G I +DE+ S+++++A GDC+ Y + K V LA A + G+
Sbjct: 251 LEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGR 308
|
Length = 444 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 83/334 (24%), Positives = 138/334 (41%), Gaps = 81/334 (24%)
Query: 62 KPRVVVLGSGWAGCRLMKGI---DTSLYD--VVCVSPR---NHMVFTPLLASTCVGTLEF 113
K ++V++G+G AG R ++ + LYD V PR N ++ + +LA
Sbjct: 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAG-------- 54
Query: 114 RSVAEPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
AE I+ + E G + ID N VV + +SYD
Sbjct: 55 EKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDA-----------GRTVSYD 103
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232
KL+IA G+ I G L V + I DV + + +++
Sbjct: 104 KLIIATGSYPFILPIPGSD-----LPGVFVYRTI----------DDVEAMLDCARNKK-K 147
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHV--TLIE------ANEILSSFDD 284
VV+GGG G+E + L D M +V V +H+ TL+E A +L
Sbjct: 148 AVVIGGGLLGLEAARGLKDLGM-EV-----TV---VHIAPTLMERQLDRTAGRLLR---- 194
Query: 285 RLRHYATTQLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STL 338
+L G++++ IV + + + DGTE+P L+V + G+ P L
Sbjct: 195 -------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDEL 247
Query: 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
K L + G I ++++++ S D++AVG+C
Sbjct: 248 AKEAGLAVNRG--IVVNDYMQT-SDPDIYAVGEC 278
|
Length = 793 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 6e-10
Identities = 56/249 (22%), Positives = 90/249 (36%), Gaps = 71/249 (28%)
Query: 146 DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQE 205
D H V V E + + D ++IA G S I G E +E
Sbjct: 119 DAHTVE---VNGE---------RYTADHILIATGGRPSIPDIPG-AEYGITSDGFFALEE 165
Query: 206 IRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR----DVRQRY 261
+ +++ VVG G VEF+G ++ +
Sbjct: 166 LPKRV-----------------------AVVGAGYIAVEFAG-----VLNGLGSETHL-- 195
Query: 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVD-SQKLI 315
+ + L FD +R ++ K G+RL + + K+ D S L
Sbjct: 196 ----------FVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLT 245
Query: 316 LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVG 370
L DG + L+W+ G P+T L L + G I +DE+ +V ++AVG
Sbjct: 246 LEDGETLTVDCLIWAIGREPNT--DGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVG 302
Query: 371 DCSGYLEST 379
D +G +E T
Sbjct: 303 DVTGRVELT 311
|
Length = 450 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
V++GGG GVEF+ + K VT+IE + IL D +
Sbjct: 174 VIIGGGVIGVEFASIFASL----------GSK----VTVIEMLDRILPGEDAEVSKVLQK 219
Query: 293 QLSKSGVRLVRG----IVKDVDSQKLILNDGTEVP-----YGLLVWSTGVGPSTL---VK 340
L K GV+++ V+ D Q N G E L+ + G P+T ++
Sbjct: 220 ALKKKGVKILTNTKVTAVEKNDDQVTYENKGGETETLTGEKVLV--AVGRKPNTEGLGLE 277
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397
L + GRI +DE++R +V ++A+GD G P LA VA +G
Sbjct: 278 KLGVELDERGRIVVDEYMRT-NVPGIYAIGDV------IGG---PMLAHVASHEGIV 324
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-07
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 292
VVVGGG G+EF+ L+ VT++E + +L FD+ +
Sbjct: 3 VVVGGGYIGLEFASALAKLGS--------------KVTVVERRDRLLRGFDEEIAKILQE 48
Query: 293 QLSKSGVRL-----VRGIVKDVDSQKLILNDGTE 321
+L K+G+ + V I + D + L G
Sbjct: 49 KLEKNGIEVLLNTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 50/238 (21%)
Query: 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREVH 201
IDTD V TD RTL SYDKL++A G+ I G K+ R +
Sbjct: 80 IDTDQKQVI----TDAGRTL-------SYDKLILATGSYPFILPIPGADKKGVYVFRTIE 128
Query: 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261
I R V+GGG G+E + L + M
Sbjct: 129 DLDAIM-----------------AMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD------ 165
Query: 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-----IVKDVDSQKLIL 316
V IH + L RL +L + G+ + IV + ++
Sbjct: 166 VSV---IHHAPGLMAKQLDQTAGRL---LQRELEQKGLTFLLEKDTVEIVGATKADRIRF 219
Query: 317 NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
DG+ + L+V + G+ P+ L S + I +++ ++ S D++AVG+C+
Sbjct: 220 KDGSSLEADLIVMAAGIRPNDELAVSAGIKV--NRGIIVNDSMQT-SDPDIYAVGECA 274
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 43/178 (24%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 292
VV+GGG GVEF+ + VT++EA IL D + A
Sbjct: 176 VVIGGGYIGVEFASAYASL--------------GAEVTIVEALPRILPGEDKEISKLAER 221
Query: 293 QLSKSGVR-----LVRGIVKDVDSQKLILNDGT-----EVPYGLLVWSTGVGPSTLVKSL 342
L K G++ + + + D + L DG E Y +LV + G P+T ++L
Sbjct: 222 ALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADY-VLV-AVGRRPNT--ENL 277
Query: 343 DLP----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 396
L K+ G I +DE LR +V +++A+GD G P LA A +G
Sbjct: 278 GLEELGVKTDRGFIEVDEQLRT-NVPNIYAIGDI------VGG---PMLAHKASAEGI 325
|
Length = 462 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 48/224 (21%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGIS-- 223
K +++ + +VI GA ++ I G+ ++ D GI
Sbjct: 114 KIELTAETIVINTGAVSNVLPIPGLADSKHVY--------------------DSTGIQSL 153
Query: 224 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSF 282
E RL ++GGG G+EF+G Y+ + VT+++A + IL
Sbjct: 154 ETLPERL---GIIGGGNIGLEFAG------------LYNKLGS--KVTVLDAASTILPRE 196
Query: 283 DDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
+ + A + + G+ + VK+ Q L++ + + L+++TG P+T
Sbjct: 197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256
Query: 339 ---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+++ D+ + G I +D++ + SV VFAVGD +G + T
Sbjct: 257 PLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFT 299
|
Length = 438 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 67/349 (19%)
Query: 62 KPRVVVLGSGWAGCR----LMKGIDTSLYD--VVCVSPRNHMVFTPLLASTCVGTLEFRS 115
K R+ ++G+G G R L+ D + +D V C PR +A V + S
Sbjct: 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR--------IAYDRVHLSSYFS 54
Query: 116 --VAEPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
AE ++ ++ + G + A I+ V+H + RT + YD
Sbjct: 55 HHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIH----SSAGRT-------VFYD 103
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232
KL++A G+ I G + F V+ E D+ I E R
Sbjct: 104 KLIMATGSYPWIPPIKGSETQDCF---VYRTIE------------DLNAI-EACARRSKR 147
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
VVGGG G+E +G L + + +HV ++ + + A ++ ++LR
Sbjct: 148 GAVVGGGLLGLEAAGALKNLGVE------THVIEFAPMLM--AEQLDQMGGEQLRR---- 195
Query: 293 QLSKSGVRL-----VRGIVKD-VDSQK-LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDL 344
++ GVR+ IV++ V+++K + DG+E+ +V+STG+ P L L
Sbjct: 196 KIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGL 255
Query: 345 PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA--LAQVA 391
+P G I I++ + S D++A+G+C+ + V P +AQVA
Sbjct: 256 AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRVFGLVAPGYKMAQVA 303
|
Length = 847 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI-EANEILSSFDDRLRHYA 290
++ GGG VEF+G I R + + TLI EIL FDD +R
Sbjct: 168 SILIAGGGYIAVEFAG-----IFRGLG---------VQTTLIYRGKEILRGFDDDMRRGL 213
Query: 291 TTQLSKSGVRLVRG-----IVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344
L + G+R++ I KD D + K L+ E+ +++++TG P+T L L
Sbjct: 214 AAALEERGIRILPEDSITSISKDDDGRLKATLSKHEEIVADVVLFATGRSPNT--NGLGL 271
Query: 345 PKS-----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+ G I +DE+ R S ++AVGD + + T
Sbjct: 272 EAAGVRLNDLGAIAVDEYSRT-STPSIYAVGDVTDRINLT 310
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 169 ISYDKLVIALGAEASTFGI---HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEE 225
I+ D++VIA G+ + GV+ H + I R L ++P
Sbjct: 127 ITADQVVIAAGSRPVIPPVIADSGVR--------YHTSDTIMR-------LPELPE---- 167
Query: 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEANE-ILSSF 282
V+VGGG EF+ HV + VT++ + +L
Sbjct: 168 ------SLVIVGGGFIAAEFA----------------HVFSALGVRVTVVNRSGRLLRHL 205
Query: 283 DDRLRHYATTQLSKS-GVRLVRGIV---KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
DD + T SK VRL R +V +D L L+DG+ V +L+ +TG P+
Sbjct: 206 DDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG- 264
Query: 339 VKSLDLPKS-----PGGRIGIDEWLRVPSVQDVFAVGDCS 373
LD + GR+ +DE+ R S + VFA+GD S
Sbjct: 265 -DLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVS 302
|
Length = 451 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 83/272 (30%)
Query: 137 LSHCA--GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA 194
H ID + VV + YDKLV+A GA A I G
Sbjct: 76 FPHTWVTDIDAEAQVVKSQGNQ------------WQYDKLVLATGASAFVPPIPG----- 118
Query: 195 TFLREVHHAQEIRRKLLLNLMLSDVPGISEEE----KSRLL---HCVVVGGGPTGVEFSG 247
R+L+L L S++E +++L +VVGGG G E +
Sbjct: 119 -------------RELMLTLN-------SQQEYRAAETQLRDAQRVLVVGGGLIGTELAM 158
Query: 248 ELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSS-----FDDRLRHYATTQLSKSGVRL 301
+L R + VTL++ A +L+S RL+H +L++ GV L
Sbjct: 159 DLC----RAGK----------AVTLVDNAASLLASLMPPEVSSRLQH----RLTEMGVHL 200
Query: 302 -----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGID 355
++G+ K + L+ G + ++ + G+ P+T L + L + G I +D
Sbjct: 201 LLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRG--IVVD 258
Query: 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPAL 387
+L+ S D++A+GDC+ E G+ VLP L
Sbjct: 259 SYLQT-SAPDIYALGDCA---EINGQ-VLPFL 285
|
Length = 377 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 50/181 (27%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
V+VGGG G+E++ L+DF V VT++EA + IL + D L
Sbjct: 184 VIVGGGVIGLEWASMLADF---GVE-----------VTVVEAADRILPTEDAELSKEVAR 229
Query: 293 QLSKSGVRLVRG---------------IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
L K GVR+V G IV + + ++ L +LV S G P+T
Sbjct: 230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADK-----VLV-SVGRRPNT 283
Query: 338 L---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 394
+++ D+ GG I ID++ + + ++A+GD G P LA VA +
Sbjct: 284 EGIGLENTDIDVE-GGFIQIDDFCQT-KERHIYAIGDVIGE---------PQLAHVAMAE 332
Query: 395 G 395
G
Sbjct: 333 G 333
|
Length = 472 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 8e-05
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294
+VGGG +EF+G ++ +K +HV I ++L FD+ +R + Q+
Sbjct: 257 IVGGGYIALEFAG------------IFNGLKSDVHV-FIRQKKVLRGFDEEVRDFVAEQM 303
Query: 295 SKSGVRL-----VRGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK-- 346
S G+ + I+K D S L N GT + ++++TG P+T K+L L +
Sbjct: 304 SLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT--KNLGLEEVG 361
Query: 347 ---SPGGRIGIDEWLRVPSVQDVFAVGD 371
G I +DE+ R SV ++AVGD
Sbjct: 362 VKMDKNGAIEVDEYSRT-SVPSIWAVGD 388
|
Length = 558 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 30/162 (18%)
Query: 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-L 279
+S EE + VV+GGG VEF+ I R + V L E+ L
Sbjct: 196 ALSLEELPK--RAVVLGGGYIAVEFAS-----IWRGMG---------ATVDLFFRKELPL 239
Query: 280 SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334
FDD +R L G+ L + + K K+I + G E +++++TG
Sbjct: 240 RGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA 299
Query: 335 PSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGD 371
P+T K L+L G + +DE+ R ++ ++A+GD
Sbjct: 300 PNT--KRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGD 338
|
Length = 499 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLI-EANEILSSFDDRLRH 288
V+VGGG EF +HV + VT++ + ++L D+ +
Sbjct: 171 SLVIVGGGYIAAEF----------------AHVFSALGTRVTIVNRSTKLLRHLDEDISD 214
Query: 289 YATTQLSKS-GVRLVRGIV---KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344
T K +RL R + +D D L L+DG+ V +L+ +TG P+ LD
Sbjct: 215 RFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG--DLLDA 272
Query: 345 PKS-----PGGRIGIDEWLRVPSVQDVFAVGD-CSGYL 376
+ GRI +DE+ R S + V+A+GD S Y
Sbjct: 273 EAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQ 309
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 224 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI-EANEILSSF 282
+E R+L VGGG VEF+G + + R + VTL N IL F
Sbjct: 184 DEPPRRVL---TVGGGFISVEFAGIFNAYKPRGGK-----------VTLCYRNNMILRGF 229
Query: 283 DDRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPS 336
D LR T QL +G+ ++ + + D S+ + G + +++ + G P
Sbjct: 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289
Query: 337 TLVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
T LD + + G I +DE+ R +V +++A+GD + + T
Sbjct: 290 TQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTDRVMLT 334
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 2e-04
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 47/193 (24%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L L +P ++ G G G E++ S F V+ VTLI
Sbjct: 169 LSLDHLPR----------SLIIYGAGVIGCEYA---SIFAALGVK-----------VTLI 204
Query: 274 EANEILSSF-DDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLL 327
+ L SF DD + + L SGV + V + D + L G ++ L
Sbjct: 205 NTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCL 264
Query: 328 VWSTGVGPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT 382
+++ G + L+L G++ ++E + +V ++AVGD G+
Sbjct: 265 LYA--NGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF------- 314
Query: 383 VLPALAQVAERQG 395
P+LA + QG
Sbjct: 315 --PSLASASMDQG 325
|
Length = 461 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 40/214 (18%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G L +H+ +I +L SFD + T +
Sbjct: 170 VIVGAGYIAVELAGVLHGLGSE------THL-------VIRHERVLRSFDSMISETITEE 216
Query: 294 LSKSGVRL-----VRGIVKDVDSQKLI-LNDGTEVP-YGLLVWSTGVGPSTLVKSLD--- 343
K G+ + + K V+ + +I DG + L+W+ G P+T L+
Sbjct: 217 YEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVG 276
Query: 344 LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403
+ + G+I +DE+ +V ++A+GD GK L +A A R+ L
Sbjct: 277 IKLNEKGQIIVDEYQNT-NVPGIYALGDV------VGKVELTPVAIAAGRK------LSE 323
Query: 404 RIGKAGGGRANSAKDMELGDPFVYRHLGSMATIG 437
R+ G+ + D V+ H + TIG
Sbjct: 324 RL---FNGKTDDKLDYNNVPTVVFSH-PPIGTIG 353
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 55/223 (24%), Positives = 86/223 (38%), Gaps = 46/223 (20%)
Query: 168 KISYDKLVIALGAEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226
+D+L IA GA A + + E LR A +R L + E
Sbjct: 98 SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL-------------QPE 144
Query: 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE--ANEILSSFDD 284
+S V+VG G G+E + S + VT+IE A + +
Sbjct: 145 RS----VVIVGAGTIGLELAA--------------SATQRRCKVTVIELAATVMGRNAPP 186
Query: 285 RLRHYATTQLSKSGVR--LVRGIVKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS---T 337
++ Y + ++GVR L I VD +K L L G + ++++ G+G S
Sbjct: 187 PVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIY--GIGISANDQ 244
Query: 338 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG 380
L + +L + G I IDE R +FA GD + G
Sbjct: 245 LAREANLDTANG--IVIDEACRT-CDPAIFAGGDVAITRLDNG 284
|
Length = 396 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
+ G G VE ++ + YI N +L FD+ + +
Sbjct: 241 GIAGSGYIAVELINVVNRLGA----------ESYIFA---RGNRLLRKFDETIINELEND 287
Query: 294 LSKSGVRLV-RGIVKDVDSQK------LILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP- 345
+ K+ + ++ V++++ K + + + +++ G P+T + L+L
Sbjct: 288 MKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT--EDLNLKA 345
Query: 346 ---KSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
K+P G I +D+ R SV+ ++AVGDC
Sbjct: 346 LNIKTPKGYIKVDDNQRT-SVKHIYAVGDCCM 376
|
Length = 561 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 51/210 (24%), Positives = 77/210 (36%), Gaps = 64/210 (30%)
Query: 219 VPGISEEEKSRLL-------------HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265
+PG+ RLL V+GGG G+E LS V+
Sbjct: 145 IPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRL---GVK------- 194
Query: 266 DYIHVTLIEANE-ILSSFDDRLRHYATTQLSK---------------SGVRLVRGIVKDV 309
VT+ E + IL D + A LSK SG V + K
Sbjct: 195 ----VTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGG 250
Query: 310 DSQKLILNDGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDV 366
++ + E Y +LV +TG P+T L +++ + GR +DE + SV +
Sbjct: 251 KTETI------EADY-VLV-ATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGI 301
Query: 367 FAVGDCSGYLESTGKTVLPALAQVAERQGK 396
+A GD +G P L A +G+
Sbjct: 302 YAAGDVNG---------KPPLLHEAADEGR 322
|
Length = 460 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 40/178 (22%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYA 290
V+GGG GVE + Q ++ + VT+++ ++ +L + +
Sbjct: 168 SLAVIGGGAIGVELA------------QAFARLG--SEVTILQRSDRLLPREEPEISAAV 213
Query: 291 TTQLSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGL----LVWSTGVGPSTLVKSL 342
L++ G+ +V VK V + K+I + + L+ +TG P+T L
Sbjct: 214 EEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT--DGL 271
Query: 343 DLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 395
L K G I +DE LR S ++A GD +G L+ L VA ++G
Sbjct: 272 GLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQ---------LEYVAAKEG 319
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 100.0 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.98 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.98 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.97 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.97 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.97 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.97 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.96 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.95 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.94 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.93 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.93 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.93 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.92 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.92 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.91 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.9 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.9 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.89 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.84 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.84 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.81 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.8 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.77 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.72 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.66 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.64 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.59 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.55 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.51 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.45 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.27 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.27 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.12 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.99 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.76 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.75 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.72 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.67 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.65 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.57 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.54 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.52 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.51 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.51 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.47 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.45 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.45 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.43 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.43 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.42 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.41 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.41 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.41 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.4 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 98.4 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.39 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.39 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.39 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.38 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.36 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.36 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.35 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.35 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.35 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.34 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.34 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.34 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.32 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.32 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.32 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.3 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.29 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.28 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.28 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.27 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.27 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.27 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.27 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.26 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.26 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.25 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.25 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.25 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.25 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.24 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.24 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.24 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.23 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.22 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.22 | |
| PLN02487 | 569 | zeta-carotene desaturase | 98.21 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.21 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.21 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.21 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.2 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.2 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.19 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.19 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.19 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.18 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.17 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.16 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.16 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.15 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.15 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.15 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.15 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.14 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.14 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.14 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.14 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.14 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.14 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.13 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.13 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.13 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.12 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.12 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.12 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.11 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.11 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.11 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.11 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.1 | |
| PLN02985 | 514 | squalene monooxygenase | 98.1 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.08 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.06 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.05 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.05 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.04 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.03 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.01 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.0 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 98.0 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 97.99 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 97.99 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 97.98 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.97 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.97 | |
| PLN02507 | 499 | glutathione reductase | 97.97 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.97 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.96 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.96 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.95 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.95 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.95 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 97.95 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.94 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.94 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.93 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.93 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.92 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.9 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.89 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.88 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.87 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.86 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.86 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 97.83 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.82 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.82 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.81 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.81 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.8 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.79 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.79 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.78 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 97.77 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.76 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.76 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.75 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.75 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.74 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.74 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.73 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 97.73 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.73 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.72 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.72 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.72 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.71 | |
| PLN02546 | 558 | glutathione reductase | 97.71 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.71 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.71 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.7 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.7 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.7 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.69 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.68 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.67 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.66 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.66 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.65 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.65 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.64 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.63 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.62 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.62 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.6 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.59 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.59 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 97.59 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.58 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.57 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.54 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.54 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.54 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.53 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 97.53 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.5 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.49 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.48 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.46 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.46 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.45 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.45 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.45 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.44 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.44 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.43 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.42 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.42 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.42 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.41 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.41 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.41 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.4 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.39 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.39 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.39 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.38 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.38 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.38 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.38 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.38 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.37 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 97.35 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 97.34 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.33 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.33 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 97.32 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.31 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.31 | |
| PLN02568 | 539 | polyamine oxidase | 97.31 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.29 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.29 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.29 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.28 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.25 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 97.25 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.24 | |
| PLN02676 | 487 | polyamine oxidase | 97.24 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.23 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.21 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.2 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 97.2 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.19 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.19 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.19 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.19 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.17 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.16 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.16 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.16 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.16 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.16 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 97.15 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.15 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.15 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.14 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.13 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.13 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.12 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.11 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 97.11 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.1 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.09 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 97.09 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.08 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.06 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.05 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.05 | |
| PLN02612 | 567 | phytoene desaturase | 97.05 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.05 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 97.03 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.03 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.03 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 97.02 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.02 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 97.01 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.01 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 96.99 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 96.98 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.96 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 96.95 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 96.94 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.93 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 96.92 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.91 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 96.91 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 96.9 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 96.88 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 96.88 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 96.88 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 96.87 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 96.87 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.87 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 96.87 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 96.87 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 96.87 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 96.86 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 96.85 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 96.85 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.84 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 96.84 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.83 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 96.82 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 96.81 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 96.81 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.8 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 96.79 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 96.79 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.77 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.77 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 96.77 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.77 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.74 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 96.74 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 96.74 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 96.72 | |
| PLN03000 | 881 | amine oxidase | 96.7 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 96.7 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 96.7 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 96.69 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.67 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 96.67 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 96.65 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.65 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 96.63 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 96.63 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.63 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 96.62 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 96.61 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.61 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.61 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 96.6 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.6 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 96.59 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.58 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 96.57 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 96.57 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.56 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 96.54 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 96.54 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 96.53 | |
| PLN02815 | 594 | L-aspartate oxidase | 96.53 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.52 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 96.49 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 96.49 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 96.48 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 96.48 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 96.47 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 96.45 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 96.43 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 96.43 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 96.42 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 96.4 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.38 | |
| PLN02976 | 1713 | amine oxidase | 96.37 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.36 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 96.34 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 96.33 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 96.32 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 96.29 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.28 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.26 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 96.25 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.24 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.24 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 96.24 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 96.22 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 96.17 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 96.15 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 96.15 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 96.12 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 96.1 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 96.08 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 96.07 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.95 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 95.84 | |
| PLN02985 | 514 | squalene monooxygenase | 95.83 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 95.8 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 95.77 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 95.74 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 95.65 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.65 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.58 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 95.52 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.49 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 95.48 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 95.47 | |
| PLN02785 | 587 | Protein HOTHEAD | 95.46 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 95.37 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 95.36 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.34 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 95.22 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 95.18 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.11 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 95.07 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 95.05 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.95 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.86 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 94.82 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.74 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.74 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 94.71 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 94.66 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.6 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.41 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 94.25 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 94.2 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 94.2 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.19 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.15 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 94.04 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 94.03 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 93.99 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.9 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 93.76 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.49 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.39 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 93.37 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.33 |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-76 Score=555.05 Aligned_cols=427 Identities=52% Similarity=0.863 Sum_probs=384.3
Q ss_pred CCCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010845 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 58 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
...++++|||+|+|++|.++++.|....++|+||+++++|.|+|+++.++.|.++.+.+.+|++.+... ...++.+++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~--k~~~~~y~e 128 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARK--KNGEVKYLE 128 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhc--cCCCceEEe
Confidence 446789999999999999999999999999999999999999999999999999999999999998542 223778999
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
++++.||++++.|+++...+++ ..++..+.|||||+|+|+.++.++|||+.+++++++..+|+++++.++.++++.+
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~---~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a 205 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADS---SDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKA 205 (491)
T ss_pred cccEeecccccEEEEeeeccCC---CcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999998755442 1455789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHh
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~ 296 (499)
+.|+..+++|++..+++||||||+|+|+|+||+++..+++++.||+++.+.+||++++. .+|+.|+.++.+++++.+.+
T Consensus 206 ~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 206 ELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred hcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999997 59999999999999999999
Q ss_pred CCCEEEeC-ceEEEeCCeEEECCC----cEEeeeEEEEcCCCCcchhcccCCCCCCCCC--ceeeCCCCCCCCCCCeEEe
Q 010845 297 SGVRLVRG-IVKDVDSQKLILNDG----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG--RIGIDEWLRVPSVQDVFAV 369 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~~v~~~~g----~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G--~i~vd~~l~~~~~~~Ifa~ 369 (499)
.||++.++ .|..++++.+..+.+ ++||+.+++|+||..|.++.+.+...+++.| .+.||++||+++.+||||+
T Consensus 286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAi 365 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAI 365 (491)
T ss_pred ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEe
Confidence 99999999 899999998887655 6899999999999999999888877777777 7999999999999999999
Q ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcC-----cCCCCCCceecccceEEEecCCceeE
Q 010845 370 GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGG-RANSAK-----DMELGDPFVYRHLGSMATIGRYKALV 443 (499)
Q Consensus 370 GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~g~~~~lG~~~av~ 443 (499)
|||+.. ...++++|+|.|||.++|++++.+.+...+ +..+.. .... +||.|+++|++++||+.+|++
T Consensus 366 GDca~~------~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f-~PF~Y~H~GalA~lG~ekaiA 438 (491)
T KOG2495|consen 366 GDCADQ------RGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQF-KPFKYKHLGALAYLGREKAIA 438 (491)
T ss_pred cccccc------ccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhcc-CCcccccccceeeccccchhh
Confidence 999943 335779999999999999999998764332 111101 1122 899999999999999999999
Q ss_pred eccccccCCCeEEecHHHHHHHHHHHHHhccCcchhHHhHHHHHHHhhcCCCCCCC
Q 010845 444 DLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 499 (499)
Q Consensus 444 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 499 (499)
+++.. ..+...|..+|++|+++|+.+..+||+|+.|+.||+..++||||++++
T Consensus 439 dl~~g---~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV~~dW~~~~~fGRd~s~i 491 (491)
T KOG2495|consen 439 DLPVG---KMWVSAGGSSFWLWRSAYLSKLVSWRNRFLVAIDWEKTFFFGRDSSSI 491 (491)
T ss_pred cCccC---CeeeeccchhhHHHHHHHHHHhhhhhhheeeeeheeeeEEeccccccC
Confidence 99741 228999999999999999999999999999999999999999999874
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-73 Score=555.60 Aligned_cols=397 Identities=37% Similarity=0.621 Sum_probs=361.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
.+++|||||||++|+.+|..|.+.. ++|||||++++|.|+|+++++++|.++..++..+++.+ +....+++|+++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~---~~~~~~v~~~~~ 78 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL---LRKSGNVQFVQG 78 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHH---hcccCceEEEEE
Confidence 3579999999999999999998864 89999999999999999999999999999999999998 444457999999
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcC
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
+|++||+++++|++.+ ..++.||+||+|+|+.++++++||+.|+++.+++++|+.++++++...|+.++
T Consensus 79 ~V~~ID~~~k~V~~~~-----------~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~ 147 (405)
T COG1252 79 EVTDIDRDAKKVTLAD-----------LGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147 (405)
T ss_pred EEEEEcccCCEEEeCC-----------CccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987 24899999999999999999999999999999999999999999998888887
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhC
Q 010845 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (499)
.+..+ ++..+|+|||||++|||+|++|+++....+.. |...+.+.+|+||+++ ++||.+++++++++++.|+++
T Consensus 148 ~~~~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 148 QEEDD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL 222 (405)
T ss_pred ccccc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHC
Confidence 54321 34568999999999999999999998665555 4333337899999997 799999999999999999999
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcE-EeeeEEEEcCCCCcchhcccC-CCCCCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKSL-DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
||+++++ .|+++++++|++++|++ |++|++|||+|.+++++++++ +++.|+.|++.||++||++++|||||+|||+.
T Consensus 223 GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~ 302 (405)
T COG1252 223 GVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAA 302 (405)
T ss_pred CCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEecccc
Confidence 9999999 89999999999999984 999999999999999999994 88889999999999999999999999999999
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccceEEEecCCceeEeccccccCCCe
Q 010845 375 YLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGL 454 (499)
Q Consensus 375 ~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~~av~~~~~~~~~~~~ 454 (499)
++++ .+.|+++|.|+|||+++|+||.+.++ |+ ++ +||.|.++|++++||.+.||+.+ +++
T Consensus 303 ~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~---g~-------~l-~~f~y~~~Gtl~~lG~~~av~~~------g~~ 362 (405)
T COG1252 303 VIDP---RPVPPTAQAAHQQGEYAAKNIKARLK---GK-------PL-KPFKYKDKGTLASLGDFSAVADL------GGV 362 (405)
T ss_pred CCCC---CCCCChhHHHHHHHHHHHHHHHHHhc---CC-------CC-CCCcccceEEEEEccCCceeEEe------cce
Confidence 8764 57899999999999999999999987 32 44 99999999999999999999998 569
Q ss_pred EEecHHHHHHHHHHHHHhccCcchhHHhHHHHHHHhhcCCCC
Q 010845 455 SLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 496 (499)
Q Consensus 455 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 496 (499)
.+.|+++|++|+.+|+++++.++++..+..+|+..++++++.
T Consensus 363 ~l~G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 404 (405)
T COG1252 363 KLKGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS 404 (405)
T ss_pred eeccHHHHHHHHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence 999999999999999999999999999999999999998764
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=529.92 Aligned_cols=416 Identities=47% Similarity=0.817 Sum_probs=364.0
Q ss_pred CCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 59 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
..++++|||||||+||+.+|+.|.+.+++|||||+++++.|.|+++++..|..+.+++..+++... ...+++|+.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~~~~~i~~ 82 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPAL----AKLPNRYLRA 82 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHh----ccCCeEEEEE
Confidence 356789999999999999999998878999999999999999999999999888887777776652 2256899999
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcC
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
+|++||++++.|.+.....+ ......+.+++||+||||||+.+..+++||..++++.+++++++.++++.+.++++.+.
T Consensus 83 ~V~~Id~~~~~v~~~~~~~~-~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~ 161 (424)
T PTZ00318 83 VVYDVDFEEKRVKCGVVSKS-NNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERAS 161 (424)
T ss_pred EEEEEEcCCCEEEEeccccc-ccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988421100 00001124799999999999999999999998889999999999999999888777766
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhC
Q 010845 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (499)
.+..+.++.++.++|+|||||++|+|+|.+|+++......+.|+.++++.+|++++++ ++++.+++.+.+.+++.|+++
T Consensus 162 ~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~ 241 (424)
T PTZ00318 162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRL 241 (424)
T ss_pred CCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHC
Confidence 6555555566667999999999999999999998766667777877778999999987 788999999999999999999
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 376 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~ 376 (499)
||+++++ +|.+++++.++++||+++++|++||++|.+|+++++.++++++++|+|.||++||++++|||||+|||+.++
T Consensus 242 gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~ 321 (424)
T PTZ00318 242 GVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANE 321 (424)
T ss_pred CCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCC
Confidence 9999998 899999999999999999999999999999999888899988889999999999977999999999999863
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccceEEEecCCceeEeccccccCCCeEE
Q 010845 377 ESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSL 456 (499)
Q Consensus 377 ~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~~av~~~~~~~~~~~~~~ 456 (499)
. .+.|++++.|++||+++|+||...+. |+ +..+||.+...|.+++||.++|++++ +++.+
T Consensus 322 ~----~~~~~~~~~A~~qg~~~A~ni~~~l~---g~-------~~~~~~~~~~~g~~~~lG~~~av~~~------~~~~~ 381 (424)
T PTZ00318 322 E----RPLPTLAQVASQQGVYLAKEFNNELK---GK-------PMSKPFVYRSLGSLAYLGNYSAIVQL------GAFDL 381 (424)
T ss_pred C----CCCCCchHHHHHHHHHHHHHHHHHhc---CC-------CCCCCCeecCCceEEEecCCceEEEc------CCceE
Confidence 2 34688999999999999999999886 22 11389999999999999999999987 56899
Q ss_pred ecHHHHHHHHHHHHHhccCcchhHHhHHHHHHHhhcCCCCCCC
Q 010845 457 AGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 499 (499)
Q Consensus 457 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 499 (499)
.|+++|++|+.+|+.++++|+++++++++|++++||+|++.|+
T Consensus 382 ~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 424 (424)
T PTZ00318 382 SGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424 (424)
T ss_pred ecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence 9999999999999999999999999999999999999999874
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=404.44 Aligned_cols=358 Identities=23% Similarity=0.343 Sum_probs=298.2
Q ss_pred cEEEECCchHHHHHHHhccC---CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEE
Q 010845 64 RVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
+|||||||+||+.+|..|++ .+++|+|||+++++.|.+.++.+..|....+++..++.++. ...+++|+.++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~gv~~~~~~v 76 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLA----RQAGARFVIAEA 76 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHH----HhcCCEEEEEEE
Confidence 59999999999999999964 36899999999999999988888888777666666666542 235789999999
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (499)
+.||++++.|.+.+ + .++.||+||||||+.+..|.+||..++++.+++++++...++.+.+.++..
T Consensus 77 ~~id~~~~~V~~~~---g--------~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (364)
T TIGR03169 77 TGIDPDRRKVLLAN---R--------PPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP--- 142 (364)
T ss_pred EEEecccCEEEECC---C--------CcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC---
Confidence 99999999888765 2 379999999999999999999998788888999999888776665433211
Q ss_pred CCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCE
Q 010845 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300 (499)
Q Consensus 221 ~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~ 300 (499)
...++|+|||+|++|+|+|.+|.+...+ .....+|+++...++++.+++.+.+.+.+.|++.||+
T Consensus 143 -------~~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~ 207 (364)
T TIGR03169 143 -------PGTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIE 207 (364)
T ss_pred -------CCCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 1235899999999999999999875421 0112589999555788888999999999999999999
Q ss_pred EEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCC
Q 010845 301 LVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379 (499)
Q Consensus 301 v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~ 379 (499)
++.+ ++.+++++.+.+++|+++++|.+|+|+|.+|++++...+++.+++|+|.||+++|+.++|||||+|||+.++.
T Consensus 208 v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~-- 285 (364)
T TIGR03169 208 VHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD-- 285 (364)
T ss_pred EEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCC--
Confidence 9999 8999988889999999999999999999999988888888888889999999999889999999999997643
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCcee-cccceEEEecCCceeEeccccccCCCeEEec
Q 010845 380 GKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVY-RHLGSMATIGRYKALVDLRQNKESKGLSLAG 458 (499)
Q Consensus 380 g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~lG~~~av~~~~~~~~~~~~~~~g 458 (499)
.+.|++++.|++||+++|+||.+.+. |+ ++ ++|.+ ...++++++|.+.||++. +++.+.|
T Consensus 286 --~~~~~~~~~A~~~g~~~a~ni~~~l~---g~-------~~-~~~~~~~~~~~~~~~G~~~~v~~~------~~~~~~~ 346 (364)
T TIGR03169 286 --APRPKAGVYAVRQAPILAANLRASLR---GQ-------PL-RPFRPQRDYLQLLNTGDRRAVASW------GWIIGPG 346 (364)
T ss_pred --CCCCCchHHHHHhHHHHHHHHHHHhc---CC-------CC-CCCcccccceeEEEcCCCcEEEee------cceeecC
Confidence 34578899999999999999998875 22 22 66764 466899999999999875 4789999
Q ss_pred HHHHHHHHHHHHHhccC
Q 010845 459 FLSWLVWRSAYLTRVVS 475 (499)
Q Consensus 459 ~~~~~~~~~~~~~~~~~ 475 (499)
+++|+++..+..++|.+
T Consensus 347 ~~~~~~k~~~~~~~~~~ 363 (364)
T TIGR03169 347 RWLWRLKDWIDRRFMRR 363 (364)
T ss_pred ccHHHHHHHHhHHHHhc
Confidence 99999998777766654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=350.47 Aligned_cols=302 Identities=19% Similarity=0.266 Sum_probs=241.5
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCccccc-chhhhhccCCCCCccccchhhhccccccCCCeEEE-E
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-L 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (499)
|++|||||||+||++||..|++. +++|+|||+++++.|.+ .++.+..+.....+...++.. ..+....++.+. .
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~~~ 78 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTP--EKFYDRKQITVKTY 78 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCH--HHHHHhCCCEEEeC
Confidence 35899999999999999999875 68999999999998885 455555554433211111110 112233567765 4
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
++|++||++++.|.+.+..++ +..++.||+||||||+.|+.|++++ ++++.++++.++..+++.+..
T Consensus 79 ~~V~~Id~~~~~v~~~~~~~~------~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~----- 145 (438)
T PRK13512 79 HEVIAINDERQTVTVLNRKTN------EQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA----- 145 (438)
T ss_pred CEEEEEECCCCEEEEEECCCC------cEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh-----
Confidence 799999999999998763221 1246799999999999998777653 566778888888887766531
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHh
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~ 296 (499)
...++++|||||++|+|+|..|.+++ .+|+++++. ++++.+++++.+.+.+.|++
T Consensus 146 ----------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~ 201 (438)
T PRK13512 146 ----------NQVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDK 201 (438)
T ss_pred ----------cCCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHh
Confidence 12259999999999999999998877 899999987 68888999999999999999
Q ss_pred CCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010845 297 SGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
.||+++++ +|.+++.+.+++++|+++++|.|+||+|++|+ +++++.+++++++|+|.||+++|| ++|||||+|||+.
T Consensus 202 ~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~ 280 (438)
T PRK13512 202 REIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFET-NVPNIYAIGDIIT 280 (438)
T ss_pred cCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCccc-CCCCEEEeeeeEE
Confidence 99999998 89999988899988999999999999999998 588888898888899999999998 8999999999996
Q ss_pred ccc-CCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 375 YLE-STGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 375 ~~~-~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
... ..+.+..+++++.|.+||+++|+||.
T Consensus 281 ~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 281 SHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred eeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 432 12222346788899999999999985
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=339.85 Aligned_cols=317 Identities=19% Similarity=0.263 Sum_probs=243.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCcccc-cch-hhhhccCCCCCccccchhhhccccccCCCeEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLL-ASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~-~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
++++|||||||+||++||..|++.++ +|+||++++++.|. |.+ ..+..+.........+.. .....++.++
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~ 76 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPAN-----WWQENNVHLH 76 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHH-----HHHHCCCEEE
Confidence 34689999999999999999998775 79999999988875 434 333333221111111111 1123578887
Q ss_pred EE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCc-cccCccCCCHHHHHHHHHHHHHHH
Q 010845 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~-~~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+ .|+.+|.+++.+.+.+ + .++.||+||||||+.|+.+++++. .++++.+++.+++.+++..+.
T Consensus 77 ~g~~V~~id~~~~~v~~~~---g--------~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~--- 142 (396)
T PRK09754 77 SGVTIKTLGRDTRELVLTN---G--------ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQ--- 142 (396)
T ss_pred cCCEEEEEECCCCEEEECC---C--------CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh---
Confidence 66 7999999999888764 2 379999999999999987777664 356788888999988876542
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHH
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~ 292 (499)
..++++|||+|++|+|+|..|.+.+ .+||++++. .+++ .+++.+.+.+.+
T Consensus 143 --------------~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 194 (396)
T PRK09754 143 --------------PERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQ 194 (396)
T ss_pred --------------cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHH
Confidence 2358999999999999999998876 899999986 5666 468888899999
Q ss_pred HHHhCCCEEEeC-ceEEEeCC---eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCCCeE
Q 010845 293 QLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~---~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~If 367 (499)
.+++.||+++++ +|++++.+ .+.+.+|+++++|.||+++|.+|+. +++.++++.+ +.|.||+++|| +.||||
T Consensus 195 ~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~--~gi~vd~~~~t-s~~~Iy 271 (396)
T PRK09754 195 RHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA--NGIVIDEACRT-CDPAIF 271 (396)
T ss_pred HHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC--CCEEECCCCcc-CCCCEE
Confidence 999999999998 89888753 3567889999999999999999995 6677777653 56999999999 999999
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccc--eEEEecC
Q 010845 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGR 438 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lG~ 438 (499)
|+|||+.++++.|....+++++.|.+||+++|+||.... .+++. .||.+.+.. .+.++|.
T Consensus 272 A~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~----------~~~~~-~p~~~~~~~~~~~~~~G~ 333 (396)
T PRK09754 272 AGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP----------LPLLP-PPWFWSDQYSDNLQFIGD 333 (396)
T ss_pred EccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC----------CCCCC-CCceEEEeCCccEEEeeC
Confidence 999999876554443446789999999999999986321 12232 566666543 4566764
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=332.66 Aligned_cols=302 Identities=21% Similarity=0.327 Sum_probs=233.9
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcccccc-hhhhhccCCCC-CccccchhhhccccccCCCeEEE-E
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPL-LASTCVGTLEF-RSVAEPIARIQPAISREPGSYFF-L 137 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~~~~-~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (499)
++|||||||+||+++|..|++.+ ++|+|||+++++.|.+. ++....+.... .+......+ .+.+ .+++++ .
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~gv~~~~~ 76 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPE---EFIK-SGIDVKTE 76 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHH---HHHH-CCCeEEec
Confidence 37999999999999999998864 68999999999887753 33333332111 111111111 1222 467765 5
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
++|+.||++++.|.+.+..++ ...++.||+||||||++|..|++||++ +++++++++.++.++++.+.+
T Consensus 77 ~~V~~id~~~~~v~~~~~~~~------~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~---- 146 (444)
T PRK09564 77 HEVVKVDAKNKTITVKNLKTG------SIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD---- 146 (444)
T ss_pred CEEEEEECCCCEEEEEECCCC------CEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh----
Confidence 699999999999988753222 112344999999999999999999985 567778888888877766521
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHH
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQL 294 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l 294 (499)
...++|+|||||++|+|+|..+.+.+ .+|+++++. ++++ .+++++.+.+.+.+
T Consensus 147 -----------~~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~l 201 (444)
T PRK09564 147 -----------EEIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEEL 201 (444)
T ss_pred -----------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHHH
Confidence 12359999999999999999998776 789999986 5776 58999999999999
Q ss_pred HhCCCEEEeC-ceEEEeCCe---EEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEe
Q 010845 295 SKSGVRLVRG-IVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~~---v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~ 369 (499)
++.||+++.+ +|.+++++. ....++.++++|.+|+|+|..|+ +++++++++.+++|+|.||+++|| ++|||||+
T Consensus 202 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~ 280 (444)
T PRK09564 202 RENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAA 280 (444)
T ss_pred HHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEe
Confidence 9999999998 899987542 22235568999999999999998 688888998888899999999998 99999999
Q ss_pred ccccccccCC-CCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 370 GDCSGYLEST-GKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 370 GD~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|||+..+... +....+++++.|.+||+++|+||..
T Consensus 281 GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 281 GDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred eeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcC
Confidence 9999865432 2234578999999999999999863
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=350.31 Aligned_cols=290 Identities=21% Similarity=0.359 Sum_probs=236.4
Q ss_pred CCcEEEECCchHHHHHHHhccC----CCCeEEEEcCCCCcccccc-hhhhhccCCCCCccccchhhhccccccCCCeEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~----~g~~V~lie~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
+++|||||||+||+.+|..|++ .+++||||++++++.|.+. ++.+..+. ..+++...... +....+++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~----~~~~~gI~~~ 77 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREG----FYEKHGIKVL 77 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHH----HHHhCCCEEE
Confidence 3589999999999999999965 3589999999999988864 44444332 22333222222 2233678888
Q ss_pred EE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHH
Q 010845 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+ +|+.||++.+.|.+.+ + ..+.||+||||||+.|..|++||.+. .++.+++++++.+++..+
T Consensus 78 ~g~~V~~Id~~~~~V~~~~---G--------~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~---- 142 (847)
T PRK14989 78 VGERAITINRQEKVIHSSA---G--------RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA---- 142 (847)
T ss_pred cCCEEEEEeCCCcEEEECC---C--------cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH----
Confidence 76 6999999988887654 2 37999999999999999999999863 567788999998887654
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHH
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~ 292 (499)
...++++|||||++|+|+|..|.+++ .+|+++++. .+++ .+++...+.+.+
T Consensus 143 -------------~~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~ 195 (847)
T PRK14989 143 -------------RRSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRR 195 (847)
T ss_pred -------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHH
Confidence 12358999999999999999999887 899999987 5676 589999999999
Q ss_pred HHHhCCCEEEeC-ceEEEeCC------eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCC
Q 010845 293 QLSKSGVRLVRG-IVKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~------~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~ 364 (499)
.|+++||+++++ .++++.++ .+.++||+++++|+||+|+|.+|+. +++.++++++++|+|.||++||| +.|
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~T-s~p 274 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQT-SDP 274 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcC-CCC
Confidence 999999999999 88888642 4678899999999999999999995 77788999999999999999999 899
Q ss_pred CeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 365 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 365 ~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
||||+|||+...+ ....++..|.+||+.+|.||..
T Consensus 275 ~IYAiGD~a~~~~-----~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 275 DIYAIGECASWNN-----RVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred CEEEeecceeEcC-----cccccHHHHHHHHHHHHHHhcC
Confidence 9999999997532 1234678899999999999853
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=321.59 Aligned_cols=286 Identities=23% Similarity=0.349 Sum_probs=228.7
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCccc-ccchhhhhccCCCCCcccc-chhhhccccccCCCeEEEE-
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAE-PIARIQPAISREPGSYFFL- 137 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 137 (499)
++|||||||+||+++|..|++. +.+||||++++++.| .|.+.....+.....++.. ...+ +....+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~gv~~~~~ 78 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGE----FAEQFNLRLFPH 78 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHH----HHHhCCCEEECC
Confidence 5899999999999999999874 468999999998766 4666666655444443332 1222 22335777764
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
++|+++|++.+.+.++. ..+.||+||||||+.|..|++||.+. .+.++++.++..+...+
T Consensus 79 ~~V~~id~~~~~v~~~~------------~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~------- 138 (377)
T PRK04965 79 TWVTDIDAEAQVVKSQG------------NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL------- 138 (377)
T ss_pred CEEEEEECCCCEEEECC------------eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh-------
Confidence 68999999988887532 47999999999999999999999754 67778888877665543
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-CCHHHHHHHHHHHH
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLS 295 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-~~~~~~~~~~~~l~ 295 (499)
...++|+|||||++|+|+|..|.+.+ .+|+++++. .+++. +++.+.+.+.+.|+
T Consensus 139 ----------~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 194 (377)
T PRK04965 139 ----------RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLT 194 (377)
T ss_pred ----------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHH
Confidence 12358999999999999999998776 899999987 56654 58889999999999
Q ss_pred hCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEe
Q 010845 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~ 369 (499)
+.||+++.+ .|.+++.+ .+.+.+|++++||.||+|+|.+|+ .+++.++++.+ +| |.||++||| +.|||||+
T Consensus 195 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l~t-s~~~VyA~ 271 (377)
T PRK04965 195 EMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYLQT-SAPDIYAL 271 (377)
T ss_pred hCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCccc-CCCCEEEe
Confidence 999999998 89998764 367788999999999999999999 47777888775 35 999999999 89999999
Q ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 370 GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 370 GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|||+.++. .. .+.++.|.+||+.+|+||..
T Consensus 272 GD~a~~~~----~~-~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 272 GDCAEING----QV-LPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred eecEeECC----ce-eehHHHHHHHHHHHHHHhcC
Confidence 99997632 12 23567799999999999863
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=339.13 Aligned_cols=285 Identities=21% Similarity=0.367 Sum_probs=234.8
Q ss_pred EEEECCchHHHHHHHhccC---CCCeEEEEcCCCCccccc-chhhhhccCCCCCccccchhhhccccccCCCeEEEEE-E
Q 010845 65 VVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (499)
Q Consensus 65 VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (499)
|||||||+||+++|..|++ .+++|||||+++++.|.+ .++.+..|....+++..+..+. + ...+++++.+ +
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~---~-~~~gv~~~~g~~ 76 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDW---Y-EKHGITLYTGET 76 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHH---H-HHCCCEEEcCCe
Confidence 6999999999999998865 357999999999988874 4666777666555554444443 2 2357888875 8
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
|+.||++++.|.+.+ + .++.||+||||||+.|+.|++||.+ ++++.+++++++..+++.+
T Consensus 77 V~~Id~~~k~V~~~~---g--------~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~-------- 137 (785)
T TIGR02374 77 VIQIDTDQKQVITDA---G--------RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA-------- 137 (785)
T ss_pred EEEEECCCCEEEECC---C--------cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh--------
Confidence 999999999888765 2 4799999999999999999999985 4677888999988877654
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHHHh
Q 010845 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSK 296 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l~~ 296 (499)
...++++|||||++|+|+|..|.+.+ .+|+++++. .+++ .+++...+.+.+.|++
T Consensus 138 ---------~~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 138 ---------QRFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHH
Confidence 12358999999999999999999887 899999986 5665 5789999999999999
Q ss_pred CCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCCCeEEec
Q 010845 297 SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~G 370 (499)
.||+++++ .+.++.++ .|.++||+++++|+||+++|++|+. +++.++++.+ |.|.||++||| ++|||||+|
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~~T-s~p~IyA~G 271 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSMQT-SDPDIYAVG 271 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCccc-CCCCEEEee
Confidence 99999999 78888653 5788999999999999999999994 6677788775 66999999999 999999999
Q ss_pred cccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 371 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 371 D~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
||+..+. .....+..|.+||+++|.||.
T Consensus 272 D~a~~~~-----~~~gl~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 272 ECAEHNG-----RVYGLVAPLYEQAKVLADHIC 299 (785)
T ss_pred ecceeCC-----cccccHHHHHHHHHHHHHHhc
Confidence 9997532 123357779999999999985
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=307.16 Aligned_cols=312 Identities=26% Similarity=0.366 Sum_probs=233.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chhhh-----h------ccC------CCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLAST-----C------VGT------LEF 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~~~-----~------~g~------~~~ 113 (499)
..+|+||||||+||..+|.++++.|.+|.|||++..+... | ++... . .|. .+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 4689999999999999999999999999999998644322 1 11100 0 000 111
Q ss_pred Cccccc-------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 114 RSVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 114 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
..+... +......+.+..+++++.++..-++ .++|.+... + ...+++|++|||||++|..|+
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~-~--------~~~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGE-D--------KETITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCC-C--------ceEEEeCEEEEcCCCCCcCCC
Confidence 111111 1111223444568999999988887 567777652 1 258999999999999999999
Q ss_pred CCCccccC-ccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 187 IHGVKENA-TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 187 ipG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
+||+++.. +...+ + +....+|. +++|||||++|+|+|..++.++
T Consensus 152 ~~~~~~~~~~~s~~---~----------l~~~~lP~----------~lvIiGgG~IGlE~a~~~~~LG------------ 196 (454)
T COG1249 152 GPGIDGARILDSSD---A----------LFLLELPK----------SLVIVGGGYIGLEFASVFAALG------------ 196 (454)
T ss_pred CCCCCCCeEEechh---h----------cccccCCC----------EEEEECCCHHHHHHHHHHHHcC------------
Confidence 99986432 22211 1 12224564 9999999999999999999998
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCc--EEeeeEEEEcCCCCcch
Q 010845 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGT--EVPYGLLVWSTGVGPST 337 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~--~i~~D~vi~a~G~~p~~ 337 (499)
.+||++++. ++||.+++++++.+.+.|++.|++++++ ++++++.+ .+.+++|+ ++++|.+++|+|.+||.
T Consensus 197 --~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 197 --SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred --CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 999999997 7999999999999999999999999999 78888653 36677776 79999999999999994
Q ss_pred ---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 010845 338 ---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRAN 414 (499)
Q Consensus 338 ---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 414 (499)
-+++.|++++++|+|.||+++|| +.|||||+|||+. + |.+++.|..||++||.||.. .. .
T Consensus 275 ~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~------~---~~Lah~A~~eg~iaa~~i~g-~~----~-- 337 (454)
T COG1249 275 DGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIG------G---PMLAHVAMAEGRIAAENIAG-GK----R-- 337 (454)
T ss_pred CCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCC------C---cccHhHHHHHHHHHHHHHhC-CC----C--
Confidence 36788999999999999966666 8999999999984 2 56999999999999999875 11 1
Q ss_pred CcCcCCCCCCceecccceEEEecC
Q 010845 415 SAKDMELGDPFVYRHLGSMATIGR 438 (499)
Q Consensus 415 ~~~~~~~~~~~~~~~~g~~~~lG~ 438 (499)
...++.. -|+......+++++|.
T Consensus 338 ~~~d~~~-iP~~ift~Peia~VGl 360 (454)
T COG1249 338 TPIDYRL-IPSVVFTDPEIASVGL 360 (454)
T ss_pred CcCcccC-CCEEEECCCcceeeeC
Confidence 0011222 5666555667777776
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=312.33 Aligned_cols=286 Identities=20% Similarity=0.246 Sum_probs=214.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC---------CCccccc----chhhhh----------------ccCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFTP----LLASTC----------------VGTL 111 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~---------~~~~~~~----~~~~~~----------------~g~~ 111 (499)
.++||+|||||+||+.+|..+++.|.+|+|||+. ..+..+- +.+.-. .|..
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~ 103 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE 103 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3579999999999999999999999999999962 2222221 111000 0110
Q ss_pred CCCccccchhhh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEc
Q 010845 112 EFRSVAEPIARI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (499)
Q Consensus 112 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViA 177 (499)
.......++.++ ...+....+++++.+++..+|+....|++.+ + +...+.||+||||
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~---g------~~~~~~~d~LIIA 174 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLD---G------TKLRYTAKHILIA 174 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCC---C------cEEEEEcCEEEEe
Confidence 000111111111 1122334689999999999987755555432 1 1246899999999
Q ss_pred CCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHH
Q 010845 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (499)
Q Consensus 178 tG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~ 257 (499)
||+.|..|++||.+. . .+.+++..+. .. .++|+|||||++|+|+|..+..++
T Consensus 175 TGs~p~~p~ipG~~~-~---~~~~~~~~l~----------~~----------~k~vvVIGgG~ig~E~A~~l~~~G---- 226 (499)
T PLN02507 175 TGSRAQRPNIPGKEL-A---ITSDEALSLE----------EL----------PKRAVVLGGGYIAVEFASIWRGMG---- 226 (499)
T ss_pred cCCCCCCCCCCCccc-e---echHHhhhhh----------hc----------CCeEEEECCcHHHHHHHHHHHHcC----
Confidence 999999999999632 1 1233332221 11 249999999999999999998877
Q ss_pred HHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcC
Q 010845 258 RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWST 331 (499)
Q Consensus 258 ~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~ 331 (499)
.+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|.+++. ++ +.+.+|+++++|.|++++
T Consensus 227 ----------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~ 296 (499)
T PLN02507 227 ----------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFAT 296 (499)
T ss_pred ----------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEee
Confidence 899999987 6888899999999999999999999999 8888864 33 556678899999999999
Q ss_pred CCCcch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 332 GVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|++|+. + ++.++++++++|+|.||+++|| +.|||||+|||+. . +.+++.|.+||+++|+||.
T Consensus 297 G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~------~---~~l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 297 GRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTN------R---INLTPVALMEGTCFAKTVF 361 (499)
T ss_pred cCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCC------C---CccHHHHHHHHHHHHHHHc
Confidence 999994 3 5677888888999999999999 9999999999994 1 5678999999999999985
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=308.29 Aligned_cols=279 Identities=22% Similarity=0.298 Sum_probs=208.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----chhh------h----------hccC-------CCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS------T----------CVGT-------LEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----~~~~------~----------~~g~-------~~~~ 114 (499)
++||+|||||+||++||..|++.|++|+|||++. +..+- ..+. . ..|. .+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 4799999999999999999999999999999853 22211 0000 0 0010 0100
Q ss_pred cccc-------chhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC-C
Q 010845 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF-G 186 (499)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~-~ 186 (499)
.+.. .+...........+++++.++.... +.+.|.+.. ..+.||+||||||+.|..| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~--~~~~v~v~~------------~~~~~d~vIiAtGs~p~~p~~ 146 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFT--KDGTVEVNG------------RDYTAPHILIATGGKPSFPEN 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEECC------------EEEEeCEEEEecCCCCCCCCC
Confidence 1000 1111111122235788888877654 345665532 3689999999999999988 8
Q ss_pred CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010845 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 187 ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
+||.+ ... +.++.. .....| ++++|||||++|+|+|..++.++
T Consensus 147 i~g~~-~~~---~~~~~~----------~~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g------------- 189 (450)
T TIGR01421 147 IPGAE-LGT---DSDGFF----------ALEELP----------KRVVIVGAGYIAVELAGVLHGLG------------- 189 (450)
T ss_pred CCCCc-eeE---cHHHhh----------CccccC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 99863 211 111111 111122 49999999999999999999887
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCC-cEEeeeEEEEcCCCCcch-
Q 010845 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDG-TEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g-~~i~~D~vi~a~G~~p~~- 337 (499)
.+||++++. ++++.+++++.+.+.+.|++.||+++++ .|++++.+ .+++++| +++++|.||||+|++|+.
T Consensus 190 -~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 190 -SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999987 6889999999999999999999999999 88888642 3566677 579999999999999995
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+ ++.++++++++|+|.||+++|| +.|||||+|||+. . +..++.|.+||+.+|+||.
T Consensus 269 ~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~------~---~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 269 GLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVG------K---VELTPVAIAAGRKLSERLF 326 (450)
T ss_pred cCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCC------C---cccHHHHHHHHHHHHHHHh
Confidence 2 5677888899999999999999 9999999999994 2 5678899999999999985
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=309.76 Aligned_cols=281 Identities=20% Similarity=0.324 Sum_probs=210.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh-----------hh-----ccC------CCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------TC-----VGT------LEFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~-----------~~-----~g~------~~~~~ 115 (499)
++||+||||||||++||..+++.|++|+|||++ .+...-. .+. .. .|. .+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 479999999999999999999999999999985 3322210 000 00 000 00000
Q ss_pred -------cccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC
Q 010845 116 -------VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (499)
Q Consensus 116 -------~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip 188 (499)
....+...........+++++.+++..++.+ .+.+.. ++ ..+.||+||||||+.|..|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~~--~g--------~~~~~d~lIiATGs~p~~p~i~ 148 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVLQ--DG--------TTYTAKKILIAVGGRPQKPNLP 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEec--CC--------eEEEcCEEEEecCCcCCCCCCC
Confidence 0011111111222336889999999999865 344322 12 3799999999999999999999
Q ss_pred CccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010845 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 189 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
|.+. .. +..++..+ ... .++++|||+|++|+|+|..+..++ .
T Consensus 149 G~~~-~~---~~~~~~~l----------~~~----------~~~vvVIGgG~~g~E~A~~l~~~G--------------~ 190 (446)
T TIGR01424 149 GHEL-GI---TSNEAFHL----------PTL----------PKSILILGGGYIAVEFAGIWRGLG--------------V 190 (446)
T ss_pred Cccc-ee---chHHhhcc----------ccc----------CCeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 8632 11 22222211 111 248999999999999999998876 8
Q ss_pred EEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcch-h--c
Q 010845 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPST-L--V 339 (499)
Q Consensus 269 ~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~-~--~ 339 (499)
+|+++++. .+++.+++++.+.+.+.|++.||+++.+ +|.+++. + .+.+.+|+++++|.||+|+|..|+. . +
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l 270 (446)
T TIGR01424 191 QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGL 270 (446)
T ss_pred eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCc
Confidence 99999987 6788899999999999999999999999 8888863 3 3556678899999999999999994 2 4
Q ss_pred ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 340 ~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+..+++++++|+|.||+++|| +.|||||+|||+. . +.+++.|.+||+++|+||.
T Consensus 271 ~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~------~---~~l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 271 EAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTD------R---INLTPVAIMEATCFANTEF 324 (446)
T ss_pred cccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCC------C---ccchhHHHHHHHHHHHHHh
Confidence 677888888899999999999 9999999999994 2 5688999999999999985
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=306.89 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=209.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh-----------h----h--ccC------CCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------T----C--VGT------LEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~-----------~----~--~g~------~~~~ 114 (499)
+++|+||||||||++||..|++.|++|+|||+. .+..+.+ .+. . . .|. .+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 579999999999999999999999999999986 2222110 000 0 0 010 0000
Q ss_pred ccccc-------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 115 SVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+... +.+.........+++++.++++.++. +.|++ + + ..+.||+||||||+.|..|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~-~---g--------~~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV-N---G--------ERYTADHILIATGGRPSIPDI 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE-C---C--------EEEEeCEEEEecCCCCCCCCC
Confidence 00000 11111111223588999999888864 56666 2 2 379999999999999999999
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+ ..++. .+.. ..... .++|+|||+|++|+|+|..+.+.+
T Consensus 149 ~g~~-~~~~~---~~~~----------~~~~~----------~~~vvViGgG~~g~E~A~~l~~~g-------------- 190 (450)
T PRK06116 149 PGAE-YGITS---DGFF----------ALEEL----------PKRVAVVGAGYIAVEFAGVLNGLG-------------- 190 (450)
T ss_pred CCcc-eeEch---hHhh----------Ccccc----------CCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9863 22211 1111 11111 249999999999999999998876
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCCcchh--
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTL-- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~-- 338 (499)
.+|++++++ .+++.+++++.+.+.+.|++.||+++.+ +|.+++. + .+.+.+|+++++|.||+|+|.+|+..
T Consensus 191 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l 270 (450)
T PRK06116 191 SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGL 270 (450)
T ss_pred CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCC
Confidence 899999987 6788899999999999999999999998 8988863 2 35667888999999999999999942
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++.++++++++|+|.||+++|| +.|||||+|||+. . ++++..|.+||+.+|+||.
T Consensus 271 ~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~------~---~~~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 271 GLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTG------R---VELTPVAIAAGRRLSERLF 326 (450)
T ss_pred CchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCC------C---cCcHHHHHHHHHHHHHHHh
Confidence 5667888888999999999998 9999999999984 1 5678899999999999985
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=305.13 Aligned_cols=287 Identities=20% Similarity=0.285 Sum_probs=210.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc-ccccc----hhh-----hhccCCCCCccc-------cchhh-h
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFTPL----LAS-----TCVGTLEFRSVA-------EPIAR-I 123 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~-~~~~~----~~~-----~~~g~~~~~~~~-------~~~~~-~ 123 (499)
++||+|||||+||++||..|++.|.+|+|||+.+.. ..+-. .+. ......+..... ..++. .
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 589999999999999999999999999999997642 22111 000 000001110000 01110 1
Q ss_pred ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHH
Q 010845 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHA 203 (499)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~ 203 (499)
...+.+..++.++.+++..++.....|...+ + ..++.||+||||||+.|..|++||+++... +.+..+.
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~---g-------~~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~~~ 151 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPE---G-------NLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTGL 151 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCCEEEEEeCC---C-------eEEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChhHh
Confidence 1123344588999999999876543333322 1 136899999999999999999999753211 1111111
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCC
Q 010845 204 QEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSF 282 (499)
Q Consensus 204 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~ 282 (499)
. .... ..++++|||+|++|+|+|..+.+++ .+|++++++ .++|.+
T Consensus 152 ~----------~~~~----------~~~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~ 197 (441)
T PRK08010 152 L----------NLKE----------LPGHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLPRE 197 (441)
T ss_pred h----------cccc----------cCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCCc
Confidence 1 1111 2249999999999999999999877 899999987 688988
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEEC-CCcEEeeeEEEEcCCCCcch-h--cccCCCCCCCCCceeeC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILN-DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGID 355 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~~~-~g~~i~~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~vd 355 (499)
++++.+.+.+.|++.||+++++ +|.+++.+ .+.+. ++.++++|.|++|+|.+|+. + ++.++++++++|+|.||
T Consensus 198 ~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd 277 (441)
T PRK08010 198 DRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD 277 (441)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC
Confidence 9999999999999999999998 89888643 34332 23469999999999999995 3 45678888888999999
Q ss_pred CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 356 ~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++|| +.|||||+|||+. . ++.++.|..||+.++.||.
T Consensus 278 ~~~~T-s~~~IyA~GD~~~------~---~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 278 KYLHT-TADNIWAMGDVTG------G---LQFTYISLDDYRIVRDELL 315 (441)
T ss_pred CCccc-CCCCEEEeeecCC------C---ccchhHHHHHHHHHHHHHc
Confidence 99999 9999999999994 2 5788999999999999985
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=305.84 Aligned_cols=288 Identities=19% Similarity=0.255 Sum_probs=211.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh--------hhc---------c-----CCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS--------TCV---------G-----TLEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~--------~~~---------g-----~~~~~ 114 (499)
.+++|+|||||+||+++|..|++.|.+|+|||+++.+..... .+. ... + ..+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 458999999999999999999999999999999755433211 000 000 0 00000
Q ss_pred ccccc-------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 115 SVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+... +.+.........++.++.+++..++.. .+++...+ + +...+.||+||||||+.|..|++
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~~~-g------~~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH--TVEVECPD-G------EVETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--EEEEEeCC-C------ceEEEEcCEEEEcCCCCCCCCCC
Confidence 00000 001111122336789999998888764 44443311 1 12479999999999999998887
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
++.... .+.+..+...+ .. ..++++|||||++|+|+|..++..+
T Consensus 155 ~~~~~~--~v~~~~~~~~~----------~~----------~~~~v~IiGgG~~g~E~A~~l~~~g-------------- 198 (461)
T PRK05249 155 VDFDHP--RIYDSDSILSL----------DH----------LPRSLIIYGAGVIGCEYASIFAALG-------------- 198 (461)
T ss_pred CCCCCC--eEEcHHHhhch----------hh----------cCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 775321 11122211111 11 1259999999999999999999887
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe--EEECCCcEEeeeEEEEcCCCCcch-h--
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPST-L-- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~--v~~~~g~~i~~D~vi~a~G~~p~~-~-- 338 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ .|.+++ +++ +++++|+++++|.||+|+|.+|+. .
T Consensus 199 ~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 278 (461)
T PRK05249 199 VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLN 278 (461)
T ss_pred CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCC
Confidence 899999987 7899999999999999999999999998 888886 333 445678899999999999999994 2
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++..+++++++|+|.||+++|| +.|||||+|||+.. ++++..|.+||+++|.||.
T Consensus 279 l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 279 LENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF---------PSLASASMDQGRIAAQHAV 333 (461)
T ss_pred chhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCC---------cccHhHHHHHHHHHHHHHc
Confidence 5667888888999999999999 99999999999942 6788999999999999986
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=312.14 Aligned_cols=339 Identities=17% Similarity=0.140 Sum_probs=224.8
Q ss_pred ccccccccccc--ccccCCCCCC----CCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHH
Q 010845 3 LFKHLLRNPTA--KSYSYSSPSI----IMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCR 76 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~ 76 (499)
|+--++|+|.| +|+..|.+.. .+. ...++.+++|..+.......... +.......++|+|||||+|||+
T Consensus 73 ~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~-~v~i~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~V~IIG~G~aGl~ 147 (449)
T TIGR01316 73 LPAICGRVCPQERQCEGQCTVGKMFKDVGK-PVSIGALERFVADWERQHGIETE----PEKAPSTHKKVAVIGAGPAGLA 147 (449)
T ss_pred hhHHhccCCCCccchHhhCcCCCcCCCCCC-CccHHHHHHHHHhHHHhcCCCcC----CCCCCCCCCEEEEECcCHHHHH
Confidence 45678999999 9999999876 444 47788888887664321111111 1111234689999999999999
Q ss_pred HHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeec
Q 010845 77 LMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVT 156 (499)
Q Consensus 77 aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~ 156 (499)
+|..|++.|++|+|||+++....... ........+ .++. ......+. ..++.++.+.+. .+.+.++.
T Consensus 148 aA~~l~~~G~~V~vie~~~~~GG~l~-~gip~~~~~-~~~~---~~~~~~l~-~~gv~~~~~~~v-----~~~v~~~~-- 214 (449)
T TIGR01316 148 CASELAKAGHSVTVFEALHKPGGVVT-YGIPEFRLP-KEIV---VTEIKTLK-KLGVTFRMNFLV-----GKTATLEE-- 214 (449)
T ss_pred HHHHHHHCCCcEEEEecCCCCCcEee-ecCCCccCC-HHHH---HHHHHHHH-hCCcEEEeCCcc-----CCcCCHHH--
Confidence 99999999999999999875432211 111101111 1111 11111122 256777766543 22333322
Q ss_pred CccccCCCceeeeeCCeEEEcCCC-CccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEE
Q 010845 157 DELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234 (499)
Q Consensus 157 ~~~~~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vv 234 (499)
....||+||||||+ .|..+++||.+ .+++...++.+...+ +.....+.. .......++|+
T Consensus 215 ----------~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~-------~~~~~~~~~-~~~~~~gk~Vv 276 (449)
T TIGR01316 215 ----------LFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANL-------MKAYEFPHA-DTPVYAGKSVV 276 (449)
T ss_pred ----------HHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhh-------ccccccccc-CCcccCCCeEE
Confidence 13469999999998 68888999974 223222222111111 000000000 00112356999
Q ss_pred EeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC
Q 010845 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS 311 (499)
Q Consensus 235 VvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~ 311 (499)
|||||++|+|+|..+.+++ .+||++++.. -++.. ....+.+++.||+++++ .+.++..
T Consensus 277 VIGgG~~a~d~A~~l~~~G--------------~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~ 337 (449)
T TIGR01316 277 VIGGGNTAVDSARTALRLG--------------AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIG 337 (449)
T ss_pred EECCCHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEE
Confidence 9999999999999999887 7899999862 22222 22335678899999988 7777743
Q ss_pred ---C---eEEEC---------CC-----------cEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCC
Q 010845 312 ---Q---KLILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (499)
Q Consensus 312 ---~---~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~ 364 (499)
+ +|++. +| .++++|.||+++|+.|+. +++.++++++++|+|.||+++|| +.|
T Consensus 338 ~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~T-s~~ 416 (449)
T TIGR01316 338 DEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRT-SIP 416 (449)
T ss_pred cCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCcc-CCC
Confidence 1 23332 22 269999999999999994 66677888888999999999999 999
Q ss_pred CeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 365 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 365 ~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
+|||+|||+. | +.++..|++||+.||.+|..++
T Consensus 417 ~VfA~GD~~~-----g----~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 417 GVFAGGDIIL-----G----AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CEEEecCCCC-----C----cHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999984 2 6789999999999999998653
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=305.67 Aligned_cols=286 Identities=20% Similarity=0.256 Sum_probs=208.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----chhh---------------hhccCCCCCccccchh
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS---------------TCVGTLEFRSVAEPIA 121 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----~~~~---------------~~~g~~~~~~~~~~~~ 121 (499)
.+++|+|||||+||+++|..|++.|++|+|||+++.+..+- ..+. .....+.......++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 35899999999999999999999999999999875443321 1100 0000011111111111
Q ss_pred hhc--------------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC-CC
Q 010845 122 RIQ--------------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST-FG 186 (499)
Q Consensus 122 ~~~--------------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~-~~ 186 (499)
.+. ..+.+..+++++.+++..+|. +.+.+...+ + +..++.||+||||||++|.. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~--~~v~v~~~~-g------~~~~~~~d~lViATGs~p~~~p~ 153 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGG--NTLEVTGED-G------KTTVIEFDNAIIAAGSRPIQLPF 153 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEecCC-C------ceEEEEcCEEEEeCCCCCCCCCC
Confidence 110 112234689999998887754 556554311 1 12479999999999999974 55
Q ss_pred CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010845 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 187 ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
+++..+..+ +..++..+ ...| ++++|||||++|+|+|..+.+++
T Consensus 154 ~~~~~~~v~---~~~~~~~~----------~~~~----------~~vvIiGgG~iG~E~A~~l~~~G------------- 197 (471)
T PRK06467 154 IPHDDPRIW---DSTDALEL----------KEVP----------KRLLVMGGGIIGLEMGTVYHRLG------------- 197 (471)
T ss_pred CCCCCCcEE---ChHHhhcc----------ccCC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 665433322 22232221 1122 49999999999999999999887
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCC----cEEeeeEEEEcCCCCcc
Q 010845 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG----TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g----~~i~~D~vi~a~G~~p~ 336 (499)
.+||++++. +++|.+++++.+.+.+.|++. |+++++ .|.+++. +. +.++++ +++++|.||+++|.+|+
T Consensus 198 -~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 198 -SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred -CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 899999987 789999999999999999988 999999 8888863 33 334332 46999999999999999
Q ss_pred h-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 337 T-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 337 ~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
. + ++..+++++++|+|.||+++|| +.|||||+|||+. . |++++.|.+||+.+|.||.
T Consensus 276 ~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~------~---~~la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 276 GKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVG------Q---PMLAHKGVHEGHVAAEVIA 335 (471)
T ss_pred CCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcC------C---cccHHHHHHHHHHHHHHHc
Confidence 4 2 4567888899999999999999 9999999999984 1 6789999999999999986
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=301.11 Aligned_cols=283 Identities=21% Similarity=0.285 Sum_probs=208.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc----cchhh----------------hhccCC-------CC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLAS----------------TCVGTL-------EF 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~----~~~~~----------------~~~g~~-------~~ 113 (499)
.++|||||||||||++||..|++.|++|+|||+.. +... ...+. ...|.. +.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 45899999999999999999999999999999863 2111 00000 001111 11
Q ss_pred Cccccchh--------hhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 114 RSVAEPIA--------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 114 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..+....+ .+...+....++.++.++...+ +.+.+.++. .++.||+||||||+.|..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~--~~~~v~v~~------------~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFE--SPNTVRVGG------------ETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEc--cCCEEEECc------------EEEEeCEEEEcCCCCCCCC
Confidence 11111110 1111122223788888876654 456676632 3689999999999999999
Q ss_pred CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 186 ~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
++||.+... +.+..+... .... .++|+|||+|++|+|+|..+.+++
T Consensus 149 ~i~G~~~~~--~~~~~~~~~----------~~~~----------~~~vvVIGgG~~g~E~A~~l~~~G------------ 194 (463)
T PRK06370 149 PIPGLDEVG--YLTNETIFS----------LDEL----------PEHLVIIGGGYIGLEFAQMFRRFG------------ 194 (463)
T ss_pred CCCCCCcCc--eEcchHhhC----------cccc----------CCEEEEECCCHHHHHHHHHHHHcC------------
Confidence 999975321 111111111 1111 259999999999999999999877
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEC---CCcEEeeeEEEEcCCCCcc
Q 010845 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN---DGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~---~g~~i~~D~vi~a~G~~p~ 336 (499)
.+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|.+++.+ + +.+. +++++++|.||+|+|.+|+
T Consensus 195 --~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 195 --SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred --CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 899999987 6888899999999999999999999998 89888753 2 3332 3457999999999999999
Q ss_pred h--h-cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 337 T--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 337 ~--~-~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
. + ++..+++++++|+|.||+++|| +.|||||+|||+.. ++++..|..||+++|+||..
T Consensus 273 ~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 273 TDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGR---------GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHhC
Confidence 4 3 5667888888999999999999 99999999999842 66789999999999999863
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=303.67 Aligned_cols=288 Identities=18% Similarity=0.252 Sum_probs=212.4
Q ss_pred CCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----h-----------hhh------ccC------C
Q 010845 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STC------VGT------L 111 (499)
Q Consensus 59 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~-----------~~~------~g~------~ 111 (499)
+..+++|+|||||+||+++|..|++.|.+|+|||++. +..+-.. + ... .|. +
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 3457899999999999999999999999999999863 2111000 0 000 010 0
Q ss_pred CCCccccchhhhc---------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc
Q 010845 112 EFRSVAEPIARIQ---------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (499)
Q Consensus 112 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~ 182 (499)
+...+....++.. ..+....++.++.++++.+|.+...|++.+ + ...+++||+||||||+.|
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~---g------~~~~~~~d~lViATGs~p 152 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLND---G------GEQTVHFDRAFIGTGARP 152 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecC---C------CeEEEECCEEEEeCCCCC
Confidence 0001111111110 112233579999999999998877776644 1 124799999999999999
Q ss_pred cCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcC
Q 010845 183 STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (499)
Q Consensus 183 ~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~ 262 (499)
..|++||+++..+ .+..++..+ ... .++++|||+|++|+|+|..|.+++
T Consensus 153 ~~p~i~G~~~~~~--~~~~~~~~l----------~~~----------~~~vvViG~G~~G~E~A~~l~~~g--------- 201 (468)
T PRK14694 153 AEPPVPGLAETPY--LTSTSALEL----------DHI----------PERLLVIGASVVALELAQAFARLG--------- 201 (468)
T ss_pred CCCCCCCCCCCce--Ecchhhhch----------hcC----------CCeEEEECCCHHHHHHHHHHHHcC---------
Confidence 9999999854321 122222211 111 249999999999999999999887
Q ss_pred CCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEE-CCCcEEeeeEEEEcCCCCcch-
Q 010845 263 HVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLIL-NDGTEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 263 ~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~~-~~g~~i~~D~vi~a~G~~p~~- 337 (499)
.+|+++++.++++.+++++.+.+++.|++.||+++.+ .+.+++.+ .+.+ .++.++++|.||+|+|.+|+.
T Consensus 202 -----~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 202 -----SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred -----CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 8999999878889899999999999999999999998 88888643 2322 234579999999999999995
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+ ++.++++. ++|+|.||+++|| +.|||||+|||+.. +..++.|..||+.+|.||.
T Consensus 277 ~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 277 NLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ---------PQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred CCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHhc
Confidence 3 24567765 5789999999999 99999999999952 6678899999999999985
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=304.59 Aligned_cols=280 Identities=22% Similarity=0.331 Sum_probs=207.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC---------CCcccc-------c---ch-----hhhh-----ccC--
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFT-------P---LL-----ASTC-----VGT-- 110 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~---------~~~~~~-------~---~~-----~~~~-----~g~-- 110 (499)
.+||+|||||+||+.||..+++.|.+|+|||+. ..+... | ++ .... .|.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 479999999999999999999999999999961 111111 1 00 0000 010
Q ss_pred -----CCCCc-------cccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 111 -----LEFRS-------VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 111 -----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
+++.. ....+...........+++++.++++.++.. .|.++. ..+.||+|||||
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v~G------------~~~~~D~LVIAT 224 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDVDG------------KLYTARNILIAV 224 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEECC------------EEEECCEEEEeC
Confidence 01000 0111111112223346899999999998764 555421 378999999999
Q ss_pred CCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHH
Q 010845 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (499)
Q Consensus 179 G~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~ 258 (499)
|++|..|++||.+ ++ .+..++.. .. ...++|+|||||++|+|+|..|..++
T Consensus 225 Gs~p~~P~IpG~~-~v---~~~~~~l~----------~~----------~~~k~V~VIGgG~iGvE~A~~L~~~g----- 275 (558)
T PLN02546 225 GGRPFIPDIPGIE-HA---IDSDAALD----------LP----------SKPEKIAIVGGGYIALEFAGIFNGLK----- 275 (558)
T ss_pred CCCCCCCCCCChh-hc---cCHHHHHh----------cc----------ccCCeEEEECCCHHHHHHHHHHHhcC-----
Confidence 9999999999973 22 12222211 11 12359999999999999999998876
Q ss_pred HhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC---CeEE--ECCCcEEeeeEEEEcC
Q 010845 259 QRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QKLI--LNDGTEVPYGLLVWST 331 (499)
Q Consensus 259 ~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---~~v~--~~~g~~i~~D~vi~a~ 331 (499)
.+|+++++. ++++.+++++.+.+.+.|+++||+++++ .+.+++. +.+. +.+++.+.+|.|||++
T Consensus 276 ---------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~ 346 (558)
T PLN02546 276 ---------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFAT 346 (558)
T ss_pred ---------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEee
Confidence 899999987 6889999999999999999999999999 7888853 3333 3444445689999999
Q ss_pred CCCcch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 332 GVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|++|+. + +++++++++++|+|.||+++|| +.|||||+|||+. . +++++.|.+||+.+|+||.
T Consensus 347 G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~------~---~~l~~~A~~~g~~~a~~i~ 411 (558)
T PLN02546 347 GRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTD------R---INLTPVALMEGGALAKTLF 411 (558)
T ss_pred ccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCC------C---cccHHHHHHHHHHHHHHHc
Confidence 999995 3 4678898888999999999999 9999999999994 1 5678899999999999985
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=299.86 Aligned_cols=293 Identities=24% Similarity=0.341 Sum_probs=212.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCC--------CCcccc-------c---chhh-----hhc-----cC-
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPR--------NHMVFT-------P---LLAS-----TCV-----GT- 110 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~--------~~~~~~-------~---~~~~-----~~~-----g~- 110 (499)
.++||+|||||++|..||..+++. |.+|+|||++ ..+... | ++.. ... |.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 458999999999999999999996 8999999973 222221 1 0000 000 10
Q ss_pred -------CCCCcccc-------chhhhccc-cccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEE
Q 010845 111 -------LEFRSVAE-------PIARIQPA-ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175 (499)
Q Consensus 111 -------~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LV 175 (499)
.+...+.. .++.-... +....++++++++...++ .++|.+....++. .++...+.||+||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~---~~~~~~~~~d~lI 156 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPK---SAVKERLQAEHIL 156 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCC---CCcceEEECCEEE
Confidence 00000000 11111111 223358999999976665 5677775421110 0112479999999
Q ss_pred EcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHH
Q 010845 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255 (499)
Q Consensus 176 iAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~ 255 (499)
||||+.|..|++||.+. .+ +..++.. .... .++++|||||++|+|+|..+..+..
T Consensus 157 IATGs~p~~p~i~G~~~-~~---~~~~~~~----------~~~~----------~~~vvIIGgG~iG~E~A~~~~~l~~- 211 (486)
T TIGR01423 157 LATGSWPQMLGIPGIEH-CI---SSNEAFY----------LDEP----------PRRVLTVGGGFISVEFAGIFNAYKP- 211 (486)
T ss_pred EecCCCCCCCCCCChhh-ee---chhhhhc----------cccC----------CCeEEEECCCHHHHHHHHHHHHhcc-
Confidence 99999999999999742 22 2222211 1111 2599999999999999998876520
Q ss_pred HHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEE
Q 010845 256 DVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLV 328 (499)
Q Consensus 256 ~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi 328 (499)
.+.+||++++. ++++.+++++.+.+.+.|+++||+++++ .+.+++. + .+.+.+|+++++|.|+
T Consensus 212 ----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl 281 (486)
T TIGR01423 212 ----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVM 281 (486)
T ss_pred ----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEE
Confidence 12899999987 6899999999999999999999999999 7888863 2 3666788899999999
Q ss_pred EcCCCCcchh---cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 329 WSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 329 ~a~G~~p~~~---~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+|+|++|+.. ++..+++++++|+|.||+++|| +.|||||+|||+. . ++.++.|.+||+++|+||.
T Consensus 282 ~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~------~---~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 282 MAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD------R---VMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred EeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCC------C---cccHHHHHHHHHHHHHHHh
Confidence 9999999952 3567888888999999999998 9999999999984 2 6788999999999999985
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=309.88 Aligned_cols=341 Identities=18% Similarity=0.129 Sum_probs=225.0
Q ss_pred ccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010845 3 LFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+.-|+|+|.| +|+..|.+...+.| ..|..+++|..+........+ ........++|+|||||+|||++|.+
T Consensus 85 ~p~~~grvC~~~~~Ce~~C~r~~~~~~-v~I~~l~r~~~~~~~~~~~~~-----~~~~~~~~~~V~IIG~GpAGl~aA~~ 158 (464)
T PRK12831 85 LPAVCGRVCPQESQCEGKCVLGIKGEP-VAIGKLERFVADWARENGIDL-----SETEEKKGKKVAVIGSGPAGLTCAGD 158 (464)
T ss_pred chhhhhccCCCCCChHHHhcCCCCCCC-eehhHHHHHHHHHHHHcCCCC-----CCCcCCCCCEEEEECcCHHHHHHHHH
Confidence 56678999998 99999999988764 788888888876432111111 11122346899999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010845 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++|+|||+.+....... .......+..+.+.. .....+. ..++.++.++... +.+.+++ .
T Consensus 159 l~~~G~~V~v~e~~~~~GG~l~-~gip~~~l~~~~~~~---~~~~~~~-~~gv~i~~~~~v~-----~~v~~~~---~-- 223 (464)
T PRK12831 159 LAKMGYDVTIFEALHEPGGVLV-YGIPEFRLPKETVVK---KEIENIK-KLGVKIETNVVVG-----KTVTIDE---L-- 223 (464)
T ss_pred HHhCCCeEEEEecCCCCCCeee-ecCCCccCCccHHHH---HHHHHHH-HcCCEEEcCCEEC-----CcCCHHH---H--
Confidence 9999999999998775432211 111000111111111 1111122 2467766655331 2232221 0
Q ss_pred cCCCceeeeeCCeEEEcCCC-CccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCc
Q 010845 161 TLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGg 238 (499)
...+.||+||||||+ .|+.+++||.+ +++++..++.+...+... +. +. ........++|+||||
T Consensus 224 -----~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~----~~----~~-~~~~~~~gk~VvVIGg 289 (464)
T PRK12831 224 -----LEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKA----YK----PE-YDTPIKVGKKVAVVGG 289 (464)
T ss_pred -----HhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhccc----cc----cc-ccCcccCCCeEEEECC
Confidence 024579999999998 58889999975 333332222211111000 00 00 0001134579999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-
Q 010845 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q- 312 (499)
Q Consensus 239 G~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~- 312 (499)
|++|+|+|..+.+++ .+|+++++.. .++....++ +.+++.||+++++ .+.++.. +
T Consensus 290 G~va~d~A~~l~r~G--------------a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g 350 (464)
T PRK12831 290 GNVAMDAARTALRLG--------------AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENG 350 (464)
T ss_pred cHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCC
Confidence 999999999999987 7899999752 344322221 3356789999988 6777642 2
Q ss_pred ---eEEEC------------------CCc--EEeeeEEEEcCCCCcch-hccc-CCCCCCCCCceeeCCC-CCCCCCCCe
Q 010845 313 ---KLILN------------------DGT--EVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDEW-LRVPSVQDV 366 (499)
Q Consensus 313 ---~v~~~------------------~g~--~i~~D~vi~a~G~~p~~-~~~~-~~l~~~~~G~i~vd~~-l~~~~~~~I 366 (499)
+|.+. +|+ ++++|.||+|+|+.|+. ++.. .+++++++|+|.||++ ++| +.|+|
T Consensus 351 ~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~T-s~pgV 429 (464)
T PRK12831 351 WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLT-SKEGV 429 (464)
T ss_pred eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCcc-CCCCE
Confidence 13221 222 69999999999999994 5554 5788888899999998 888 99999
Q ss_pred EEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 367 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 367 fa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
||+|||+. | +.++..|+.+|+.||.+|.+++.
T Consensus 430 fAaGD~~~-----g----~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 430 FAGGDAVT-----G----AATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred EEeCCCCC-----C----chHHHHHHHHHHHHHHHHHHHhc
Confidence 99999984 2 66889999999999999999885
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=320.20 Aligned_cols=334 Identities=15% Similarity=0.124 Sum_probs=223.4
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010845 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+--++|+|.|+|+..|+|...+. ...|..++++..+..-... .+.. ..+......++|+|||||+||++||..|+
T Consensus 484 lP~icGrVCph~Ce~~C~R~~~d~-pV~I~~Lkr~a~d~~~~~~-~~~~--~~~~~~~tgKkVaIIGgGPAGLsAA~~La 559 (1019)
T PRK09853 484 LPAITGHICDHQCQYNCTRLDYDE-AVNIRELKKVALEKGWDEY-KQRW--HKPAGIGSRKKVAVIGAGPAGLAAAYFLA 559 (1019)
T ss_pred hhhHhhCcCCchhHHHhcCCCCCC-CeeccHHHHHHHhhHHHhc-cccc--CCCCccCCCCcEEEECCCHHHHHHHHHHH
Confidence 456789999999999999998776 4888888888766432110 0010 01111234679999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010845 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+++....... . ...+...+.+ .+......+.. .++++..+....+ .++.
T Consensus 560 r~G~~VtV~Ek~~~~GG~lr-~-~IP~~Rlp~e---vL~~die~l~~-~GVe~~~gt~Vdi-------~le~-------- 618 (1019)
T PRK09853 560 RAGHPVTVFEREENAGGVVK-N-IIPQFRIPAE---LIQHDIEFVKA-HGVKFEFGCSPDL-------TVEQ-------- 618 (1019)
T ss_pred HcCCeEEEEecccccCccee-e-ecccccccHH---HHHHHHHHHHH-cCCEEEeCceeEE-------Ehhh--------
Confidence 99999999999876543211 1 1111100111 11111111222 4677766543322 2221
Q ss_pred CCceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChH
Q 010845 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~ 241 (499)
.....||+||||||+. +..+++||.+++++. .++.....++ .. +....+++|+|||||++
T Consensus 619 ---L~~~gYDaVILATGA~~~~~l~IpG~~~gV~s--aldfL~~~k~-~~-------------~~~~~GKrVVVIGGGnV 679 (1019)
T PRK09853 619 ---LKNEGYDYVVVAIGADKNGGLKLEGGNQNVIK--ALPFLEEYKN-KG-------------TALKLGKHVVVVGGGNT 679 (1019)
T ss_pred ---heeccCCEEEECcCCCCCCCCCCCCccCCcee--hHHHHHHHhh-hc-------------ccccCCCEEEEECCChH
Confidence 1245699999999997 455678886543322 1111111100 00 01123469999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-eEE--
Q 010845 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-KLI-- 315 (499)
Q Consensus 242 gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-~v~-- 315 (499)
|+|+|..+.+.+. ..+|++++++ ..+|..++++.+. + +.||+++.. .+.+++.+ .+.
T Consensus 680 AmD~Ar~a~RlgG------------akeVTLVyRr~~~~MPA~~eEle~A----l-eeGVe~~~~~~p~~I~~dG~l~~~ 742 (1019)
T PRK09853 680 AMDAARAALRVPG------------VEKVTVVYRRTKQEMPAWREEYEEA----L-EDGVEFKELLNPESFDADGTLTCR 742 (1019)
T ss_pred HHHHHHHHHhcCC------------CceEEEEEccCcccccccHHHHHHH----H-HcCCEEEeCCceEEEEcCCcEEEE
Confidence 9999998876531 1489999986 4667665544332 2 469999987 66666522 121
Q ss_pred -----------------ECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEecccccccc
Q 010845 316 -----------------LNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 377 (499)
Q Consensus 316 -----------------~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~ 377 (499)
..++.++++|.||+|+|..|+ .++...+++++++|++.||+++|| +.|+|||+|||+.
T Consensus 743 ~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqT-s~pgVFAaGD~a~--- 818 (1019)
T PRK09853 743 VMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGET-SLTNVYMIGDVQR--- 818 (1019)
T ss_pred EEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCccc-CCCCEEEEecccc---
Confidence 123357999999999999999 577778888888999999999999 9999999999984
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 378 STGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 378 ~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
| |.++..|+.||+.||++|.....
T Consensus 819 --G----p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 819 --G----PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred --C----chHHHHHHHHHHHHHHHHhhhcC
Confidence 2 67899999999999999987553
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=298.30 Aligned_cols=287 Identities=24% Similarity=0.350 Sum_probs=210.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chhhh----------hccCC---------C
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLAST----------CVGTL---------E 112 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~~~----------~~g~~---------~ 112 (499)
|++|+|||||++|+.+|..+++.|.+|+|||++. +... | ++... ..|.. +
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 4689999999999999999999999999999874 2221 1 11000 00110 0
Q ss_pred CCccccchhhh-------ccccccCCCeEEEEEEEEEEE--CCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010845 113 FRSVAEPIARI-------QPAISREPGSYFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 113 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
...+....+.+ ........+++++.+++..++ .+.+.+.+...+ + +..++.||+||||||+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~-g------~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTAD-G------GEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCC-C------ceEEEecCEEEEcCCCCCC
Confidence 00010011111 111122358999999998865 455666664311 1 1236899999999999998
Q ss_pred CCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcC
Q 010845 184 TFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (499)
Q Consensus 184 ~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~ 262 (499)
.|++++.. +..++.+++. .....| ++++|||+|++|+|+|..|++++
T Consensus 153 ~~p~~~~~~~~v~~~~~~~-------------~~~~~~----------~~vvVIGgG~ig~E~A~~l~~~g--------- 200 (466)
T PRK07845 153 ILPTAEPDGERILTWRQLY-------------DLDELP----------EHLIVVGSGVTGAEFASAYTELG--------- 200 (466)
T ss_pred CCCCCCCCCceEEeehhhh-------------cccccC----------CeEEEECCCHHHHHHHHHHHHcC---------
Confidence 76554432 2233322211 111122 48999999999999999998877
Q ss_pred CCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe--EEECCCcEEeeeEEEEcCCCCcc
Q 010845 263 HVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 263 ~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+|+++++. ++++.+++++.+.+.+.|+++||+++++ ++.+++ +++ +.+.+|+++++|.|++++|++|+
T Consensus 201 -----~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 201 -----VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred -----CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcC
Confidence 899999986 7889999999999999999999999999 888885 333 45678889999999999999999
Q ss_pred hh---cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 337 TL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 337 ~~---~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
.. +++++++++++|+|.||+++|| +.|||||+|||+.. +++++.|..||+++|.||.
T Consensus 276 ~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 276 TAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV---------LPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred CCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC---------ccchhHHHHHHHHHHHHHc
Confidence 52 5677898888999999999999 99999999999952 6789999999999999986
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=297.84 Aligned_cols=288 Identities=17% Similarity=0.201 Sum_probs=208.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhh---------------hhc-----cCC----CCC--
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TCV-----GTL----EFR-- 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~---------------~~~-----g~~----~~~-- 114 (499)
.+++|+|||||+||+++|..|++.|.+|+|||+++.+....+..+ ... |.. +.+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 358999999999999999999999999999998754332211000 000 110 000
Q ss_pred ccc-------cchhh--hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 115 SVA-------EPIAR--IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 115 ~~~-------~~~~~--~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
.+. ..++. +...+....++.++.+++..++. +.+.+...+ + +..++.||+||||||+.|..|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~-g------~~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHD-G------GERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecC--CEEEEEeCC-C------ceEEEEeCEEEEecCCCCCCC
Confidence 000 00100 11112222478899998877765 455554311 1 124799999999999999999
Q ss_pred CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 186 ~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
++||.++..+ ..+ .+. + ..... .++++|||+|++|+|+|..+..++
T Consensus 166 ~i~G~~~~~~-~~~-~~~--l--------~~~~~----------~k~vvVIGgG~iG~E~A~~l~~~G------------ 211 (479)
T PRK14727 166 PIPGLMDTPY-WTS-TEA--L--------FSDEL----------PASLTVIGSSVVAAEIAQAYARLG------------ 211 (479)
T ss_pred CCCCcCccce-ecc-hHH--h--------ccccC----------CCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 9999753211 111 111 1 11111 259999999999999999999877
Q ss_pred CceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEEE-CCCcEEeeeEEEEcCCCCcch-h--
Q 010845 266 DYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLIL-NDGTEVPYGLLVWSTGVGPST-L-- 338 (499)
Q Consensus 266 ~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~~-~~g~~i~~D~vi~a~G~~p~~-~-- 338 (499)
.+|+++++.++++.+++++.+.+.+.|++.||+++++ +|.+++. +.+.+ .++.++++|.||+|+|..|+. +
T Consensus 212 --~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~ 289 (479)
T PRK14727 212 --SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLN 289 (479)
T ss_pred --CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCC
Confidence 8999999878888899999999999999999999998 8888753 33333 223469999999999999995 2
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++..+++++++|+|.||+++|| +.|||||+|||+.. |..++.|..||+.+|.||.
T Consensus 290 l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 290 LEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDL---------PQFVYVAAAAGSRAGINMT 344 (479)
T ss_pred chhhCceecCCCCEEECCCeec-CCCCEEEeeecCCc---------chhhhHHHHHHHHHHHHHc
Confidence 4566888888999999999999 99999999999952 6678899999999999985
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=303.53 Aligned_cols=286 Identities=23% Similarity=0.329 Sum_probs=207.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhh---------------h-----ccC------CCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------C-----VGT------LEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~---------------~-----~g~------~~~~ 114 (499)
..+||+|||||+||++||..|++.|++|+|||++. +......... . .|. .+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999875 3222110000 0 000 0111
Q ss_pred ccccchhh-------hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 115 SVAEPIAR-------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 115 ~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+....+. -...+....+++++.++++.+|... +.+...+ + ...+.||+||||||+.|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~--~~v~~~~-~-------~~~~~~d~lViAtGs~p~~~-- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNT--VRVMTED-G-------EQTYTAKNIILATGSRPREL-- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCE--EEEecCC-C-------cEEEEeCEEEEeCCCCCCCC--
Confidence 11111000 0111223468999999998887654 4443211 1 14799999999999998653
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+.....+.+..++..+. . ..++++|||||++|+|+|..+.+++
T Consensus 150 pg~~~~~~~v~~~~~~~~~~----------~----------~~~~vvVvGgG~~g~E~A~~l~~~g-------------- 195 (462)
T PRK06416 150 PGIEIDGRVIWTSDEALNLD----------E----------VPKSLVVIGGGYIGVEFASAYASLG-------------- 195 (462)
T ss_pred CCCCCCCCeEEcchHhhCcc----------c----------cCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 56532221222333332211 1 1249999999999999999998876
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEECCC---cEEeeeEEEEcCCCCcch-
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDG---TEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~~g---~~i~~D~vi~a~G~~p~~- 337 (499)
.+||++++. +++|.+++++.+.+.+.|++.||+++++ +|.+++.+ . +.++++ +++++|.||+|+|.+|+.
T Consensus 196 ~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 196 AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 899999986 7889999999999999999999999999 89998753 3 344555 679999999999999994
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
+ ++..+++.+ +|+|.||+++|+ +.|+|||+|||+. .++++..|.+||+.+|.||..
T Consensus 276 ~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~---------~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 276 NLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVG---------GPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCC---------CcchHHHHHHHHHHHHHHHcC
Confidence 3 356788887 899999999998 9999999999994 167899999999999999863
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=305.36 Aligned_cols=287 Identities=19% Similarity=0.239 Sum_probs=209.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh---------------hh--ccCC------CC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS---------------TC--VGTL------EF 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~---------------~~--~g~~------~~ 113 (499)
..++|+|||||+||+++|..|++.|.+|+|||++ .+..+.+ .+. .. .|.. ..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3589999999999999999999999999999987 3322110 000 00 0110 00
Q ss_pred Cccccchhhhc---------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 114 RSVAEPIARIQ---------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 114 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..+....+... ..+....++.++++++..++.....|.+.+ + +..++.||+||||||+.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~---g------~~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLND---G------GERVVAFDRCLIATGASPAV 246 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCC---C------ceEEEEcCEEEEcCCCCCCC
Confidence 01111101000 112232478999999998876543443322 1 12479999999999999999
Q ss_pred CCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010845 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (499)
Q Consensus 185 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~ 264 (499)
|++||.++..+ +.+ .+. +..... .++++|||||++|+|+|..+.+++
T Consensus 247 p~i~g~~~~~~-~~~-~~~----------~~~~~~----------~~~vvViGgG~ig~E~A~~l~~~g----------- 293 (561)
T PRK13748 247 PPIPGLKETPY-WTS-TEA----------LVSDTI----------PERLAVIGSSVVALELAQAFARLG----------- 293 (561)
T ss_pred CCCCCCCccce-Ecc-HHH----------hhcccC----------CCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 99999754221 111 111 111112 249999999999999999999887
Q ss_pred CCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEEEC-CCcEEeeeEEEEcCCCCcch-h-
Q 010845 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPST-L- 338 (499)
Q Consensus 265 ~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~~~-~g~~i~~D~vi~a~G~~p~~-~- 338 (499)
.+|+++++.++++.+++++.+.+.+.|++.||+++++ .+.+++. +.+.+. ++.++++|.||+|+|.+||. +
T Consensus 294 ---~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l 370 (561)
T PRK13748 294 ---SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSL 370 (561)
T ss_pred ---CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCc
Confidence 8999999887888899999999999999999999998 8888864 233322 23479999999999999995 3
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++.+++++++|+|.||+++|| +.|||||+|||+.. +..++.|..||+++|.||.
T Consensus 371 ~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 371 ALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQ---------PQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred CchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCC---------ccchhHHHHHHHHHHHHHc
Confidence 4677888888999999999999 99999999999952 6778899999999999985
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=298.36 Aligned_cols=288 Identities=20% Similarity=0.230 Sum_probs=209.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC--------Ccccc----cchh-----------hhh--ccC--CCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFT----PLLA-----------STC--VGT--LEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~--------~~~~~----~~~~-----------~~~--~g~--~~~~ 114 (499)
++||+|||||+||+.+|..+++.|.+|+|||+.. .+... ...| ... ... +...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 3799999999999999999999999999999731 11111 0000 000 000 0100
Q ss_pred c-cccc--------------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 115 S-VAEP--------------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 115 ~-~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
. ...+ +..-...+....++++++++...+++ ++|.+...+ + ....+.||+||||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~-g------~~~~~~~d~lVIATG 152 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNKK-G------KEKIYSAERFLIATG 152 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEeccC-C------CceEEEeCEEEEecC
Confidence 0 0011 11111112344689999999988875 456654311 1 124799999999999
Q ss_pred CCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHH
Q 010845 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (499)
Q Consensus 180 ~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~ 259 (499)
++|..|++||.++..+ +..+.. .....| ++++|||||++|+|+|..+++++
T Consensus 153 s~p~~p~ipG~~~~~~---~~~~~~----------~~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 203 (484)
T TIGR01438 153 ERPRYPGIPGAKELCI---TSDDLF----------SLPYCP----------GKTLVVGASYVALECAGFLAGIG------ 203 (484)
T ss_pred CCCCCCCCCCccceee---cHHHhh----------cccccC----------CCEEEECCCHHHHHHHHHHHHhC------
Confidence 9999999999754322 222211 111223 38999999999999999999887
Q ss_pred hcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCC---cEEeeeEEEEcC
Q 010845 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDG---TEVPYGLLVWST 331 (499)
Q Consensus 260 ~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g---~~i~~D~vi~a~ 331 (499)
.+|+++++..+++.+++++.+.+++.|++.||+++++ .+.+++. + .++++++ +++++|.|+||+
T Consensus 204 --------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~ 275 (484)
T TIGR01438 204 --------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAI 275 (484)
T ss_pred --------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEe
Confidence 8999999878889999999999999999999999998 6777753 2 3555555 379999999999
Q ss_pred CCCcch-h--cccCCCCCCC-CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 332 GVGPST-L--VKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~-~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|++||. + ++..++++++ +|+|.||+++|| +.|+|||+|||+.. .+.+++.|.+||+.+|+||..
T Consensus 276 G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~--------~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 276 GRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILED--------KQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecCC--------CccchHHHHHHHHHHHHHHhc
Confidence 999995 3 4567787765 589999999999 99999999999941 256789999999999999863
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=297.29 Aligned_cols=287 Identities=21% Similarity=0.361 Sum_probs=208.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc-ccccchhhhhc---------cCCCCCccccc-------hhhhc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFTPLLASTCV---------GTLEFRSVAEP-------IARIQ 124 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~-~~~~~~~~~~~---------g~~~~~~~~~~-------~~~~~ 124 (499)
++||||||||+||++||..|++.|++|+|||+++.. ..+-....... ...+...+... +....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999998642 22111000000 00111111111 11100
Q ss_pred cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHH
Q 010845 125 PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQ 204 (499)
Q Consensus 125 ~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~ 204 (499)
.......++.++.+++..+ +++.|.+...++ ..++.||+||||||+.|+.|++||+++... +.+..+..
T Consensus 83 ~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~--------~~~~~~d~vViATGs~~~~p~i~G~~~~~~-v~~~~~~~ 151 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDE--------KIELTAETIVINTGAVSNVLPIPGLADSKH-VYDSTGIQ 151 (438)
T ss_pred HHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCC--------cEEEEcCEEEEeCCCCCCCCCCCCcCCCCc-EEchHHHh
Confidence 1122336788888887665 456777654111 247999999999999999999999743211 11112211
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCC
Q 010845 205 EIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD 283 (499)
Q Consensus 205 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~ 283 (499)
.+ ... .++|+|||||++|+|+|..+++.+ .+|+++++. .+++.++
T Consensus 152 ~~----------~~~----------~~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~ 197 (438)
T PRK07251 152 SL----------ETL----------PERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILPREE 197 (438)
T ss_pred cc----------hhc----------CCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCCCCC
Confidence 11 111 248999999999999999998876 899999997 6888889
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEE-ECCCcEEeeeEEEEcCCCCcch-h--cccCCCCCCCCCceeeCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLI-LNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDE 356 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~-~~~g~~i~~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~vd~ 356 (499)
+++.+.+.+.|++.||+++++ +|.+++.+ .+. ..+++++++|.+|+|+|.+|+. . ++..++..+++|++.||+
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~ 277 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDD 277 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECC
Confidence 999999999999999999998 88888753 333 3467789999999999999983 2 334566677889999999
Q ss_pred CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 357 ~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++|| +.|||||+|||+. . ++..+.|..+|+.++.++.
T Consensus 278 ~~~t-~~~~IyaiGD~~~------~---~~~~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 278 YCQT-SVPGVFAVGDVNG------G---PQFTYISLDDFRIVFGYLT 314 (438)
T ss_pred Cccc-CCCCEEEeeecCC------C---cccHhHHHHHHHHHHHHHc
Confidence 9999 9999999999994 2 6788999999999988765
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=299.61 Aligned_cols=282 Identities=22% Similarity=0.259 Sum_probs=208.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----h-----------hhhc----cC------CCCCccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STCV----GT------LEFRSVA 117 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~-----------~~~~----g~------~~~~~~~ 117 (499)
++|+||||||||+++|..|++.|.+|+|||+++ +..+.+. + .... |. .+...+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 489999999999999999999999999999864 3322110 0 0000 00 0011000
Q ss_pred cchhhh--------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCC
Q 010845 118 EPIARI--------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (499)
Q Consensus 118 ~~~~~~--------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG 189 (499)
...+++ ...+....+++++.+++..+| .+.|.+.+ + ...+.||+||||||+.|..|++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~---g-------~~~~~~~~lIiATGs~p~~p~i~G 147 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDL---G-------REVRGAKRFLIATGARPAIPPIPG 147 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcC---C-------eEEEEeCEEEEcCCCCCCCCCCCC
Confidence 001111 111223357889999887765 46676643 1 136899999999999999999999
Q ss_pred ccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE
Q 010845 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (499)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~ 269 (499)
.++.. +.+..+... ... ..++++|||+|++|+|+|..|..++ .+
T Consensus 148 ~~~~~--~~~~~~~~~----------~~~----------~~~~vvIIGgG~~g~E~A~~l~~~g--------------~~ 191 (463)
T TIGR02053 148 LKEAG--YLTSEEALA----------LDR----------IPESLAVIGGGAIGVELAQAFARLG--------------SE 191 (463)
T ss_pred cccCc--eECchhhhC----------ccc----------CCCeEEEECCCHHHHHHHHHHHHcC--------------Cc
Confidence 75432 112222111 111 1249999999999999999999877 89
Q ss_pred EEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEC---CCcEEeeeEEEEcCCCCcch--h
Q 010845 270 VTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN---DGTEVPYGLLVWSTGVGPST--L 338 (499)
Q Consensus 270 Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~---~g~~i~~D~vi~a~G~~p~~--~ 338 (499)
|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .+.+. +++++++|.||+|+|.+|+. +
T Consensus 192 Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l 271 (463)
T TIGR02053 192 VTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGL 271 (463)
T ss_pred EEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCC
Confidence 9999987 7889999999999999999999999999 79888643 23333 23689999999999999994 3
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++..+++++++|+|.||++||| +.|||||+|||+. . +++++.|..||+++|.||.
T Consensus 272 ~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~------~---~~~~~~A~~~g~~aa~ni~ 327 (463)
T TIGR02053 272 GLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTG------G---LQLEYVAAKEGVVAAENAL 327 (463)
T ss_pred CccccCCEECCCCcEeECCCccC-CCCCEEEeeecCC------C---cccHhHHHHHHHHHHHHhc
Confidence 5667888888999999999999 9999999999995 1 6789999999999999986
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=313.52 Aligned_cols=364 Identities=15% Similarity=0.123 Sum_probs=234.4
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010845 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+--++|+|.|+|+..|.|...+.| ..|..+++|..+..-.... +.. ..+......++|+|||||||||+||..|+
T Consensus 482 lp~icGrVC~h~Ce~~C~R~~~d~p-V~I~~Lkr~a~d~~~~~~~-~~~--~~~~~~~~~kkVaIIGGGPAGLSAA~~LA 557 (1012)
T TIGR03315 482 LPAITGTICDHQCQYKCTRLDYDES-VNIREMKKVAAEKGYDEYK-TRW--HKPQGKSSAHKVAVIGAGPAGLSAGYFLA 557 (1012)
T ss_pred hhhHhhCcCCcchHHHhcCCCCCCC-CcccHHHHHHHhhHHHhcC-ccC--CCCCCCCCCCcEEEECCCHHHHHHHHHHH
Confidence 5567899999999999999987755 7888888888765321100 000 01111234579999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010845 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+++........ ......+..+ .+......+. ..+++++.+.. ..+.++.
T Consensus 558 r~G~~VTV~Ek~~~lGG~l~~-~IP~~rlp~e----~l~~~ie~l~-~~GVe~~~g~~-------~d~~ve~-------- 616 (1012)
T TIGR03315 558 RAGHPVTVFEKKEKPGGVVKN-IIPEFRISAE----SIQKDIELVK-FHGVEFKYGCS-------PDLTVAE-------- 616 (1012)
T ss_pred HCCCeEEEEecccccCceeee-cccccCCCHH----HHHHHHHHHH-hcCcEEEEecc-------cceEhhh--------
Confidence 999999999998765433110 0110111111 1111111122 24677665421 1122222
Q ss_pred CCceeeeeCCeEEEcCCCCc-cCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChH
Q 010845 163 EPWKFKISYDKLVIALGAEA-STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~ 241 (499)
.....||+||||||+.+ ..+++||..+.+ +..++ +...+.+ . .......++|+|||||++
T Consensus 617 ---l~~~gYDaVIIATGA~~~~~l~I~G~~~~v--~~ave----fL~~~~~----~------~~~~~~GK~VVVIGGGnv 677 (1012)
T TIGR03315 617 ---LKNQGYKYVILAIGAWKHGPLRLEGGGERV--LKSLE----FLRAFKE----G------PTINPLGKHVVVVGGGNT 677 (1012)
T ss_pred ---hhcccccEEEECCCCCCCCCCCcCCCCcce--eeHHH----HHHHhhc----c------ccccccCCeEEEECCCHH
Confidence 12457999999999984 455778753322 22222 2111110 0 001123579999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhcCCCCCceEEEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEE-
Q 010845 242 GVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLIL- 316 (499)
Q Consensus 242 gve~A~~l~~~-~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~- 316 (499)
|+|+|..+.+. + ..+|+++++. ..+|...+++.+ . .+.||+++.. .+.+++++.+++
T Consensus 678 AmD~Ar~a~Rl~G-------------a~kVtLVyRr~~~~Mpa~~eEl~~----a-leeGVe~~~~~~p~~I~~g~l~v~ 739 (1012)
T TIGR03315 678 AMDAARAALRVPG-------------VEKVTVVYRRTKRYMPASREELEE----A-LEDGVDFKELLSPESFEDGTLTCE 739 (1012)
T ss_pred HHHHHHHHHHhCC-------------CceEEEEEccCccccccCHHHHHH----H-HHcCCEEEeCCceEEEECCeEEEE
Confidence 99999988764 3 1489999986 356665554433 2 2469999987 666666443322
Q ss_pred ----------------CCCc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCC-CCCCCCCCeEEeccccccc
Q 010845 317 ----------------NDGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSGYL 376 (499)
Q Consensus 317 ----------------~~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~-l~~~~~~~Ifa~GD~a~~~ 376 (499)
.+|+ +++||+||+|+|+.|+ .+++.++++++++|++.||++ ++| +.|+|||+|||+.
T Consensus 740 ~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~-- 816 (1012)
T TIGR03315 740 VMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGET-NITNVFVIGDANR-- 816 (1012)
T ss_pred EEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCcc-CCCCEEEEeCcCC--
Confidence 1233 6899999999999998 577788898899999999986 887 9999999999984
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCC-CCcCcCCCCCCceecccceEEEecC
Q 010845 377 ESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRA-NSAKDMELGDPFVYRHLGSMATIGR 438 (499)
Q Consensus 377 ~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~lG~ 438 (499)
| |.++..|+.||+.||.+|........... ..........+|.|...|.|...+.
T Consensus 817 ---G----P~tVv~AIaqGr~AA~nIl~~~~~~~~~~~~~~~~~~~~~~~~Y~~kG~la~~~~ 872 (1012)
T TIGR03315 817 ---G----PATIVEAIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKKGILVIDDH 872 (1012)
T ss_pred ---C----ccHHHHHHHHHHHHHHHHhccccCCcccccccccccccccchhhccCcceeccCc
Confidence 2 77899999999999999976433111000 0000011125788999998876553
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=296.17 Aligned_cols=286 Identities=20% Similarity=0.296 Sum_probs=226.5
Q ss_pred HHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCCCCC-c-cccchhhhccccccCCCeEEE-EEEEEEEECCCCE
Q 010845 76 RLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFR-S-VAEPIARIQPAISREPGSYFF-LSHCAGIDTDNHV 149 (499)
Q Consensus 76 ~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~v~~id~~~~~ 149 (499)
+||.+|++. +++|||||+++++.|.|. ++.+..+..... + +....+.+ ....++.++ .++|+.+|++++.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~----~~~~gv~~~~~~~V~~id~~~~~ 76 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVF----IKKRGIDVKTNHEVIEVNDERQT 76 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHH----HHhcCCeEEecCEEEEEECCCCE
Confidence 367888764 578999999999999884 666665544321 1 22222222 123567765 5799999999999
Q ss_pred EEEeeecCccccCCCceeeee--CCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHH
Q 010845 150 VHCETVTDELRTLEPWKFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226 (499)
Q Consensus 150 v~~~~~~~~~~~~~~~~~~i~--yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 226 (499)
+.+.+..++ ..+. ||+||||||+.|+.|++||++ +.++..+++.++..++..+..
T Consensus 77 v~~~~~~~~--------~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~-------------- 134 (427)
T TIGR03385 77 VVVRNNKTN--------ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK-------------- 134 (427)
T ss_pred EEEEECCCC--------CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh--------------
Confidence 988752211 2566 999999999999999999986 567778888888877766421
Q ss_pred HhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-Cc-CCCCCHHHHHHHHHHHHhCCCEEEeC
Q 010845 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-LSSFDDRLRHYATTQLSKSGVRLVRG 304 (499)
Q Consensus 227 ~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~-l~~~~~~~~~~~~~~l~~~gV~v~~~ 304 (499)
...++|+|||||++|+|+|..|++.+ .+|+++++. .+ .+.+++++.+.+.+.|++.||+++.+
T Consensus 135 -~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 199 (427)
T TIGR03385 135 -NKVENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLN 199 (427)
T ss_pred -cCCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeC
Confidence 12359999999999999999998876 789999987 45 46788999999999999999999998
Q ss_pred -ceEEEeCCe--EEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCC-
Q 010845 305 -IVKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST- 379 (499)
Q Consensus 305 -~v~~v~~~~--v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~- 379 (499)
.|.+++.+. +.+.+|+++++|.+|+|+|.+|+ +++++++++++++|+|.||+++|| +.|+|||+|||+..+...
T Consensus 200 ~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~ 278 (427)
T TIGR03385 200 EEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIIT 278 (427)
T ss_pred CEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccC
Confidence 899997654 36778899999999999999999 688888999888999999999998 899999999999865432
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHH
Q 010845 380 GKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 380 g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+.+..+++++.|.+||+++|+||.
T Consensus 279 ~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 279 KKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CCceeeechHHHHHHHHHHHHHhc
Confidence 222345689999999999999985
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=293.24 Aligned_cols=278 Identities=22% Similarity=0.284 Sum_probs=205.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc----cchhhh-----------h-----ccC------CCCCcc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLAST-----------C-----VGT------LEFRSV 116 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~----~~~~~~-----------~-----~g~------~~~~~~ 116 (499)
+||+|||||++|..+|..+ .|.+|+|||++. +... ...|.- . .|. .+...+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 6899999999999998764 599999999863 2111 111100 0 011 011111
Q ss_pred ccc----hhhhc----ccc-ccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 117 AEP----IARIQ----PAI-SREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 117 ~~~----~~~~~----~~~-~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
... +.++. ..+ .+..++.++.+++..+ +.++|++.+ + ..+.||+||||||++|..|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v~~---g--------~~~~~d~lViATGs~p~~p~i 145 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRTGD---G--------EEITADQVVIAAGSRPVIPPV 145 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEECC---C--------CEEEeCEEEEcCCCCCCCCCC
Confidence 111 11110 111 2346788999988877 467787753 2 379999999999999999999
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+.. .+.+..++..+. .. .++++|||||++|+|+|..+.+++
T Consensus 146 ~g~~~~--~~~~~~~~~~l~----------~~----------~~~vvIIGgG~iG~E~A~~l~~~G-------------- 189 (451)
T PRK07846 146 IADSGV--RYHTSDTIMRLP----------EL----------PESLVIVGGGFIAAEFAHVFSALG-------------- 189 (451)
T ss_pred CCcCCc--cEEchHHHhhhh----------hc----------CCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 986432 223333433221 11 249999999999999999999877
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch-h--
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L-- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~-~-- 338 (499)
.+|+++++. ++++.+++++.+.+.+.+ +.||+++++ ++.+++.+ .+.+.+|+++++|.|++|+|.+|+. +
T Consensus 190 ~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~ 268 (451)
T PRK07846 190 VRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLD 268 (451)
T ss_pred CeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccC
Confidence 899999987 688889999988877655 568999998 88888643 3556788899999999999999994 4
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++.+++++++|+|.||+++|| +.|||||+|||+.. +++++.|.+||+++|+||.
T Consensus 269 ~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~---------~~l~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 269 AAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSP---------YQLKHVANHEARVVQHNLL 323 (451)
T ss_pred chhcCceECCCCcEeECCCccc-CCCCEEEEeecCCC---------ccChhHHHHHHHHHHHHHc
Confidence 3567888888999999999998 99999999999952 5678999999999999986
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=297.21 Aligned_cols=299 Identities=19% Similarity=0.285 Sum_probs=205.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chh-----h-----hhccC-----CCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLA-----S-----TCVGT-----LEFRS 115 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~-----~-----~~~g~-----~~~~~ 115 (499)
.++||+|||||+||++||..+++.|.+|+|||++. +... | ++. . ...|. .+...
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 45799999999999999999999999999999862 2221 0 000 0 00011 01111
Q ss_pred cc-------cchhhhccccccCCCeEEEEEEEEEEECCCCEEEEee----------ecCccccC-------CCceeeeeC
Q 010845 116 VA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCET----------VTDELRTL-------EPWKFKISY 171 (499)
Q Consensus 116 ~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~----------~~~~~~~~-------~~~~~~i~y 171 (499)
+. ..+.+....+.+..+++++.++..-++. ++|.+.. .+++.-.. ...+.++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~--~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~a 203 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSE--NQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEG 203 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecC--CEEEeeccccccccccccccccceeeeccceecCCCcEEEC
Confidence 10 0111111122334688999888765543 3332210 00000000 001247999
Q ss_pred CeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHH
Q 010845 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (499)
Q Consensus 172 d~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~ 251 (499)
|+||||||+.|..|++||.+ +.+ +.++.. ... ..++|+|||||++|+|+|..+..
T Consensus 204 d~lVIATGS~P~~P~IpG~~-~v~---ts~~~~----------~l~-----------~pk~VvIIGgG~iGlE~A~~l~~ 258 (561)
T PTZ00058 204 KNILIAVGNKPIFPDVKGKE-FTI---SSDDFF----------KIK-----------EAKRIGIAGSGYIAVELINVVNR 258 (561)
T ss_pred CEEEEecCCCCCCCCCCCce-eEE---EHHHHh----------hcc-----------CCCEEEEECCcHHHHHHHHHHHH
Confidence 99999999999999999963 222 222211 111 13599999999999999999998
Q ss_pred HHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---eE--EECCC-cEEe
Q 010845 252 FIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KL--ILNDG-TEVP 323 (499)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---~v--~~~~g-~~i~ 323 (499)
++ .+||++++. ++++.+++++.+.+.+.|++.||+++++ .|.+++++ ++ .+.++ ++++
T Consensus 259 ~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~ 324 (561)
T PTZ00058 259 LG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEH 324 (561)
T ss_pred cC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEE
Confidence 87 899999987 6889999999999999999999999999 78888753 23 33344 5799
Q ss_pred eeEEEEcCCCCcch-hcc--cCCCCCCCCCceeeCCCCCCCCCCCeEEecccccccc-----------------------
Q 010845 324 YGLLVWSTGVGPST-LVK--SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE----------------------- 377 (499)
Q Consensus 324 ~D~vi~a~G~~p~~-~~~--~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~----------------------- 377 (499)
+|.|++|+|++|+. .+. ..++ .+++|+|.||+++|| +.|||||+|||+..+.
T Consensus 325 aD~VlvA~Gr~Pn~~~L~l~~~~~-~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 402 (561)
T PTZ00058 325 FDYVIYCVGRSPNTEDLNLKALNI-KTPKGYIKVDDNQRT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKE 402 (561)
T ss_pred CCEEEECcCCCCCccccCccccce-ecCCCeEEECcCCcc-CCCCEEEeEeccCcccccccccccccccccccccccccc
Confidence 99999999999994 332 2233 245799999999999 9999999999997321
Q ss_pred -CCCCCC-CCchHHHHHHHHHHHHHHHH
Q 010845 378 -STGKTV-LPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 378 -~~g~~~-~p~~~~~A~~~g~~aa~~i~ 403 (499)
..+... .++++..|..||+++|.||.
T Consensus 403 ~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 403 NTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred ccccccccCcCchHHHHHHHHHHHHHHh
Confidence 122222 37889999999999999985
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=282.28 Aligned_cols=278 Identities=21% Similarity=0.228 Sum_probs=199.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhh---hccC---CCCCccccchhhhccccccCCCeEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---CVGT---LEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~---~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
++|+|||||+||+++|..|++.|++|+|||+++. ......... ..+. ....++...+.+. +. ..++.++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~-~~gv~~~ 75 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQ---AV-KFGAEII 75 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHH---HH-HcCCeEE
Confidence 4799999999999999999999999999998762 111000000 0111 1112222333332 22 2467777
Q ss_pred EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHH
Q 010845 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~ 213 (499)
.++|+.++++++.+.+...+ + ..+.||+||+|||+.++.|++||.++. ........+
T Consensus 76 ~~~v~~v~~~~~~~~v~~~~-~--------~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~----------- 135 (300)
T TIGR01292 76 YEEVIKVDLSDRPFKVKTGD-G--------KEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD----------- 135 (300)
T ss_pred EEEEEEEEecCCeeEEEeCC-C--------CEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC-----------
Confidence 79999999887766554311 1 379999999999999998899986431 111100000
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~ 293 (499)
....+.++|+|||+|++|+|+|.+|.+.+ .+|+++++.+.+. ....+.+.
T Consensus 136 -----------~~~~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~-----~~~~~~~~ 185 (300)
T TIGR01292 136 -----------GPFFKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFR-----AEKILLDR 185 (300)
T ss_pred -----------hhhcCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccC-----cCHHHHHH
Confidence 00123359999999999999999998776 8999999874322 12345566
Q ss_pred HHhC-CCEEEeC-ceEEEeCCe----EEEC---CC--cEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCC
Q 010845 294 LSKS-GVRLVRG-IVKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVP 361 (499)
Q Consensus 294 l~~~-gV~v~~~-~v~~v~~~~----v~~~---~g--~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~ 361 (499)
+++. ||+++.+ .+.+++.+. +++. ++ +++++|++|||+|++|+. ++..+ +..+++|++.||+++++
T Consensus 186 l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t- 263 (300)
T TIGR01292 186 LRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRT- 263 (300)
T ss_pred HHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCcc-
Confidence 7777 9999988 899987652 4443 23 579999999999999984 66666 66788899999999998
Q ss_pred CCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010845 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 362 ~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
++||||++|||+.. .++++..|+.||+.||.+|.+.
T Consensus 264 ~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 264 SVPGVFAAGDVRDK--------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCCCEEEeecccCc--------chhhhhhhhhhHHHHHHHHHhh
Confidence 99999999999952 2677899999999999998764
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=293.96 Aligned_cols=285 Identities=21% Similarity=0.264 Sum_probs=207.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC--------Ccccc-------cc---hhh-----------hhccC--
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFT-------PL---LAS-----------TCVGT-- 110 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~--------~~~~~-------~~---~~~-----------~~~g~-- 110 (499)
++||+||||||||++||..|++.|.+|+|||+.+ .+..+ |. +.. ...|.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 4799999999999999999999999999999631 12211 10 000 00011
Q ss_pred ---CCCCccccchhhhc-------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC
Q 010845 111 ---LEFRSVAEPIARIQ-------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (499)
Q Consensus 111 ---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~ 180 (499)
.+...+........ .......++.++++++...+ .+.|.+.+.. +...+.||+||||||+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~--------~~~~i~~d~lIIATGs 154 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNS--------QEETITAKYILIATGG 154 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCC--------CceEEECCEEEEecCC
Confidence 11111111111111 01112257788888877653 4567665311 1247999999999999
Q ss_pred CccCC-CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHH
Q 010845 181 EASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (499)
Q Consensus 181 ~~~~~-~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~ 259 (499)
.|..| .+||.++..+ +..+... ....| ++++|||||++|+|+|..|+.++
T Consensus 155 ~p~~p~~i~G~~~~~~---~~~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 205 (499)
T PTZ00052 155 RPSIPEDVPGAKEYSI---TSDDIFS----------LSKDP----------GKTLIVGASYIGLETAGFLNELG------ 205 (499)
T ss_pred CCCCCCCCCCccceee---cHHHHhh----------hhcCC----------CeEEEECCCHHHHHHHHHHHHcC------
Confidence 99987 4898754322 2222211 11122 48999999999999999999887
Q ss_pred hcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCC
Q 010845 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 260 ~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
.+||++++..+++.+++++.+.+.+.|++.||+++.+ .+.+++. + .+.+.+|+++++|.|+|++|.+
T Consensus 206 --------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 206 --------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred --------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 8999999877788999999999999999999999998 7777753 2 3566788899999999999999
Q ss_pred cch-hc--ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 335 PST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 335 p~~-~~--~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
||. ++ +.++++++++|++.+++. || +.|+|||+|||+. + .+.+++.|.+||+.+|+||.
T Consensus 278 pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~-----~---~~~l~~~A~~~g~~aa~ni~ 339 (499)
T PTZ00052 278 PDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE-----G---RPELTPVAIKAGILLARRLF 339 (499)
T ss_pred CCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC-----C---CcccHHHHHHHHHHHHHHHh
Confidence 994 43 567888888898777777 88 9999999999994 1 26789999999999999985
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=295.51 Aligned_cols=282 Identities=23% Similarity=0.321 Sum_probs=202.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---ch-----hhhhc-----cCCCCCccccchh
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LL-----ASTCV-----GTLEFRSVAEPIA 121 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~-----~~~~~-----g~~~~~~~~~~~~ 121 (499)
++||+|||||+||++||..|++.|.+|+|||++. +... | ++ ..... .... .....++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCcccCHH
Confidence 4799999999999999999999999999999862 1111 1 11 00000 0000 00111111
Q ss_pred hhc--------------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 122 RIQ--------------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 122 ~~~--------------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+. ..+....++..+.++...++ .+.+.+...+ + +..++.||+||||||+.|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~--~~~v~v~~~~-g------~~~~~~~d~lViATGs~p~~~-- 150 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD--ANTLEVDLND-G------GTETVTFDNAIIATGSSTRLL-- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC--CCEEEEEecC-C------CeeEEEcCEEEEeCCCCCCCC--
Confidence 100 01111246667766655543 4566655321 1 124799999999999998764
Q ss_pred CCcc--ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 188 HGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 188 pG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
||.+ +..+ +..+. +.....| ++++|||||++|+|+|..+++++
T Consensus 151 pg~~~~~~v~---~~~~~----------~~~~~~~----------~~vvVIGgG~ig~E~A~~l~~~G------------ 195 (466)
T PRK07818 151 PGTSLSENVV---TYEEQ----------ILSRELP----------KSIVIAGAGAIGMEFAYVLKNYG------------ 195 (466)
T ss_pred CCCCCCCcEE---chHHH----------hccccCC----------CeEEEECCcHHHHHHHHHHHHcC------------
Confidence 6643 2222 22111 1111122 49999999999999999999877
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEC--CC--cEEeeeEEEEcCCCCc
Q 010845 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGP 335 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~--~g--~~i~~D~vi~a~G~~p 335 (499)
.+|+++++. +++|.+++++.+.+.+.|+++||+++++ +|++++++ . +.+. +| +++++|.||+|+|.+|
T Consensus 196 --~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 196 --VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred --CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCccc
Confidence 899999986 7899999999999999999999999999 89888653 2 3443 56 4799999999999999
Q ss_pred ch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 336 ST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 336 ~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+. . +++.+++++++|+|.||+++|| +.|+|||+|||+. . +++++.|.+||++||.||.
T Consensus 274 n~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~------~---~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 274 RVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTA------K---LQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred CCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCC------C---cccHhHHHHHHHHHHHHHc
Confidence 94 2 5677888888899999999999 9999999999994 1 6789999999999999986
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=276.93 Aligned_cols=295 Identities=22% Similarity=0.359 Sum_probs=237.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCccccc-chhhhhccCCCCCccccchhhhccccccCCCeEEEE-
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL- 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (499)
.++++|||||++|..|+..+++.++ +++|+-++.+++|.+ .++....-. ...++...+.+.+..+++++.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~------~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTV------GEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeec------cccccccChhhHhhcCceEEEc
Confidence 5789999999999999999999875 599999898888874 232221111 111222222233446777655
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
+.|+.+|.+.+++.+.+ .+.++|++|+||||+.++++++||.+ ++...+++++++..+...+.
T Consensus 148 t~v~~~D~~~K~l~~~~-----------Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~----- 211 (478)
T KOG1336|consen 148 TSVVKADLASKTLVLGN-----------GETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQ----- 211 (478)
T ss_pred ceeEEeeccccEEEeCC-----------CceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhc-----
Confidence 59999999999999887 35899999999999999999999986 77888999999988766542
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHH
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQL 294 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l 294 (499)
...+|+|+|+|..|+|+|.+|.... .+||+|++. ..++ .+.+.+.+.+++++
T Consensus 212 ------------~~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~ 265 (478)
T KOG1336|consen 212 ------------LGGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYY 265 (478)
T ss_pred ------------cCceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHH
Confidence 2348999999999999999998765 899999997 5666 68899999999999
Q ss_pred HhCCCEEEeC-ceEEEeCC------eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCCCe
Q 010845 295 SKSGVRLVRG-IVKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~------~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~I 366 (499)
++.||+++.+ .+.+++.+ .|.+.||++++||+||+.+|.+|++ +++. +..++++|.|.||+.+|| +.|||
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t-~~~~V 343 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQT-SVPNV 343 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceee-ccCCc
Confidence 9999999999 78888664 4788999999999999999999994 6665 777889999999999999 89999
Q ss_pred EEeccccccccCCC-CCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 367 FAVGDCSGYLESTG-KTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 367 fa~GD~a~~~~~~g-~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
||+||++.++-+.. .......++.|..+|+.+...|....
T Consensus 344 yAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~ 384 (478)
T KOG1336|consen 344 YAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAP 384 (478)
T ss_pred ccccceeecccccccccccchHHHHHHHHHHhhhhhhhccC
Confidence 99999999875421 12225778899999998888776543
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=299.75 Aligned_cols=335 Identities=18% Similarity=0.150 Sum_probs=222.0
Q ss_pred cccccccccccc--cccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010845 3 LFKHLLRNPTAK--SYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+.-++|+|.|+ |+..|.+.....| ..++.+.++......... ... +.......++|+|||||+|||++|..
T Consensus 85 ~~~~~g~vc~~~~~C~~~C~~~~~~~~-v~i~~l~~~~~~~~~~~~---~~~--~~~~~~~~~~VvIIGgGpaGl~aA~~ 158 (457)
T PRK11749 85 LPAVCGRVCPQERLCEGACVRGKKGEP-VAIGRLERYITDWAMETG---WVL--FKRAPKTGKKVAVIGAGPAGLTAAHR 158 (457)
T ss_pred chhhhcCcCCCccCHHHHhcCCCCCCC-cchHHHHHHHHHHHHhcC---CCC--CCCCccCCCcEEEECCCHHHHHHHHH
Confidence 556789999999 9999998877665 466666666544321100 000 01112345799999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010845 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++|+|||+++.+..... .... ......++. ......+.. .++.+..++... +.+.++.
T Consensus 159 l~~~g~~V~lie~~~~~gG~l~-~gip-~~~~~~~~~---~~~~~~l~~-~gv~~~~~~~v~-----~~v~~~~------ 221 (457)
T PRK11749 159 LARKGYDVTIFEARDKAGGLLR-YGIP-EFRLPKDIV---DREVERLLK-LGVEIRTNTEVG-----RDITLDE------ 221 (457)
T ss_pred HHhCCCeEEEEccCCCCCcEee-ccCC-CccCCHHHH---HHHHHHHHH-cCCEEEeCCEEC-----CccCHHH------
Confidence 9999999999999876532211 0010 000111111 111122222 467776655431 1222221
Q ss_pred cCCCceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcC
Q 010845 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
..+.||+||+|||+. +..+++||.+.. .+.++..+..... ... ...+....++|+|||||
T Consensus 222 ------~~~~~d~vvlAtGa~~~~~~~i~G~~~~-----gv~~~~~~l~~~~----~~~----~~~~~~~g~~VvViGgG 282 (457)
T PRK11749 222 ------LRAGYDAVFIGTGAGLPRFLGIPGENLG-----GVYSAVDFLTRVN----QAV----ADYDLPVGKRVVVIGGG 282 (457)
T ss_pred ------HHhhCCEEEEccCCCCCCCCCCCCccCC-----CcEEHHHHHHHHh----hcc----ccccCCCCCeEEEECCC
Confidence 136799999999986 777788986421 1112222211111 000 00011234699999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCe---
Q 010845 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK--- 313 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~--- 313 (499)
++|+|+|..+.+.+. .+|+++++. . .++.... ..+.+++.||+++++ .+.++.++.
T Consensus 283 ~~g~e~A~~l~~~G~-------------~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v~~i~~~~~~~ 344 (457)
T PRK11749 283 NTAMDAARTAKRLGA-------------ESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAPVEILGDEGRV 344 (457)
T ss_pred HHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCcEEEEecCCce
Confidence 999999999987761 389999985 2 4444322 345678899999998 788886542
Q ss_pred --EEEC-------------------CCcEEeeeEEEEcCCCCcch-hcc-cCCCCCCCCCceeeCC-CCCCCCCCCeEEe
Q 010845 314 --LILN-------------------DGTEVPYGLLVWSTGVGPST-LVK-SLDLPKSPGGRIGIDE-WLRVPSVQDVFAV 369 (499)
Q Consensus 314 --v~~~-------------------~g~~i~~D~vi~a~G~~p~~-~~~-~~~l~~~~~G~i~vd~-~l~~~~~~~Ifa~ 369 (499)
|++. +++++++|.||+++|++|+. ++. ..+++++++|+|.||+ +++| +.|+|||+
T Consensus 345 ~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~ 423 (457)
T PRK11749 345 TGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRT-SLPGVFAG 423 (457)
T ss_pred EEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCcc-CCCCEEEe
Confidence 5542 23479999999999999994 433 4578888899999998 7888 99999999
Q ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 370 GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 370 GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|||+. + ++++..|++||+.+|.+|.+.+.
T Consensus 424 GD~~~-----~----~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 424 GDIVT-----G----AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCcCC-----C----chHHHHHHHHHHHHHHHHHHHHh
Confidence 99994 1 57899999999999999999886
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=292.97 Aligned_cols=284 Identities=22% Similarity=0.288 Sum_probs=199.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----------h-----hhhhcc----C--CCCCccccch
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----------L-----ASTCVG----T--LEFRSVAEPI 120 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----------~-----~~~~~g----~--~~~~~~~~~~ 120 (499)
++||+||||||||++||..+++.|.+|+|||++..+..+-+ + .....+ . +.. ....++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~~~~~ 81 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTLNL 81 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-cCccCH
Confidence 47999999999999999999999999999997543333210 0 000000 0 000 000111
Q ss_pred hh--------------hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 121 AR--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 121 ~~--------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
.+ -...+.+..++.++.++. .++. .+.+.+...+ + +..++.||+||||||++|. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~-~~~v~v~~~~-g------~~~~~~~d~lVIATGs~p~--~ 150 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDG-VGKVVVKAED-G------SETQLEAKDIVIATGSEPT--P 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc-CCEEEEEcCC-C------ceEEEEeCEEEEeCCCCCC--C
Confidence 11 111122335688888875 3333 3345443211 1 1247999999999999884 4
Q ss_pred CCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 187 ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
+||+. +....+ +..++. ..... .++|+|||||++|+|+|..+.+++
T Consensus 151 ipg~~~~~~~~~-~~~~~~----------~~~~~----------~~~vvIIGgG~ig~E~A~~l~~~G------------ 197 (466)
T PRK06115 151 LPGVTIDNQRII-DSTGAL----------SLPEV----------PKHLVVIGAGVIGLELGSVWRRLG------------ 197 (466)
T ss_pred CCCCCCCCCeEE-CHHHHh----------CCccC----------CCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 67753 222112 211111 11112 359999999999999999998877
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE--EEC---C--CcEEeeeEEEEcCCCC
Q 010845 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILN---D--GTEVPYGLLVWSTGVG 334 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v--~~~---~--g~~i~~D~vi~a~G~~ 334 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.++++ +++ .+. + ++++++|.|++++|.+
T Consensus 198 --~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 198 --AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred --CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 899999986 7889999999999999999999999999 8988874 233 232 2 3579999999999999
Q ss_pred cch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 335 PST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 335 p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|+. . ++..+++.+++| +.||+++|| +.|+|||+|||+. . |++++.|.+||+++|+||.
T Consensus 276 pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~------~---~~la~~A~~~g~~aa~~i~ 336 (466)
T PRK06115 276 PYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTS------G---PMLAHKAEDEAVACIERIA 336 (466)
T ss_pred cccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCC------C---cccHHHHHHHHHHHHHHHc
Confidence 994 2 345567777777 778999999 9999999999994 1 6789999999999999986
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=292.10 Aligned_cols=285 Identities=21% Similarity=0.279 Sum_probs=208.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----h---------------hhhccCCCCCccccchhhh
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A---------------STCVGTLEFRSVAEPIARI 123 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~---------------~~~~g~~~~~~~~~~~~~~ 123 (499)
+||+|||||+||+++|..|++.|++|+|||+ +.+..+... + ......+.......++..+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 7899999999999999999999999999998 444322100 0 0000011111111111111
Q ss_pred --------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC-
Q 010845 124 --------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH- 188 (499)
Q Consensus 124 --------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip- 188 (499)
...+....+++++.+++..++. +.+.+...+ + ..++.||+||||||+.|+.|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~-g-------~~~~~~d~lVlAtG~~p~~~~~~~ 150 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDP--GTVLVTGEN-G-------EETLTAKNIIIATGSRPRSLPGPF 150 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEecCC-C-------cEEEEeCEEEEcCCCCCCCCCCCC
Confidence 0112233578899998887764 445554311 1 14799999999999999888776
Q ss_pred CccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010845 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 189 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
+.... .+.+..+...+ .. ..++|+|||||++|+|+|..+.+.+ .
T Consensus 151 ~~~~~--~~~~~~~~~~~----------~~----------~~~~vvViGgG~~g~e~A~~l~~~g--------------~ 194 (461)
T TIGR01350 151 DFDGE--VVITSTGALNL----------KE----------VPESLVIIGGGVIGIEFASIFASLG--------------S 194 (461)
T ss_pred CCCCc--eEEcchHHhcc----------cc----------CCCeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 33211 12222332211 11 2248999999999999999998876 8
Q ss_pred EEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEE--ECCC--cEEeeeEEEEcCCCCcch---
Q 010845 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDG--TEVPYGLLVWSTGVGPST--- 337 (499)
Q Consensus 269 ~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~--~~~g--~~i~~D~vi~a~G~~p~~--- 337 (499)
+|+++++. .+++.+++++.+.+.+.|++.||+++.+ +|.+++. +++. +.+| +++++|.+|+|+|.+|+.
T Consensus 195 ~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l 274 (461)
T TIGR01350 195 KVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGL 274 (461)
T ss_pred cEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCC
Confidence 99999987 6889999999999999999999999999 8888763 4443 4456 579999999999999994
Q ss_pred hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 338 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 ~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
+++..++.++++|+|.||+++|+ +.|+|||+|||+. . +++++.|.+||+.+|+||..
T Consensus 275 ~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~------~---~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 275 GLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIG------G---PMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred CcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCC------C---cccHHHHHHHHHHHHHHHcC
Confidence 36777888888999999999999 8999999999994 1 67899999999999999863
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=291.40 Aligned_cols=282 Identities=25% Similarity=0.312 Sum_probs=203.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----------hh------h---hh-cc------CCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----------LA------S---TC-VG------TLEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----------~~------~---~~-~g------~~~~~ 114 (499)
.+++|||||||+||+++|..|++.|.+|+|||++ .+..... +. . .. .| ..+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 3589999999999999999999999999999994 3332211 00 0 00 01 01111
Q ss_pred ccccchhhhc--------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 115 SVAEPIARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 115 ~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
.+....+... .......++.++.+++..++. +.+.+.. .++.||+||||||+. .|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v~~------------~~~~~d~lIiATGs~--~p~ 144 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEVNG------------ERIEAKNIVIATGSR--VPP 144 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEECc------------EEEEeCEEEEeCCCC--CCC
Confidence 1111111111 111233567888888776654 4555421 479999999999998 566
Q ss_pred CCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 187 ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
+||... ....+.+..+...+ . ...++++|||+|++|+|+|..|.+++
T Consensus 145 ipg~~~~~~~~~~~~~~~~~~----------~----------~~~k~v~VIGgG~~g~E~A~~l~~~g------------ 192 (460)
T PRK06292 145 IPGVWLILGDRLLTSDDAFEL----------D----------KLPKSLAVIGGGVIGLELGQALSRLG------------ 192 (460)
T ss_pred CCCCcccCCCcEECchHHhCc----------c----------ccCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 777632 11111122222211 1 12259999999999999999999877
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---eEEE--CCC--cEEeeeEEEEcCCCCcc
Q 010845 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLIL--NDG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---~v~~--~~g--~~i~~D~vi~a~G~~p~ 336 (499)
.+|+++++. ++++.+++++.+.+++.|++. |+++++ +|.+++.+ .+++ .++ +++++|.|++++|.+|+
T Consensus 193 --~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 193 --VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred --CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 899999987 688889999999999999999 999998 88888643 3553 233 57999999999999999
Q ss_pred h---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 337 T---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 337 ~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
. .++.++++++++|+|.||+++|| +.|||||+|||+.. ++++..|..||+++|.||..
T Consensus 270 ~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~---------~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 270 TDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGK---------PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCC---------ccchhHHHHHHHHHHHHhcC
Confidence 4 25667888888999999999999 99999999999952 56789999999999999864
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=291.96 Aligned_cols=288 Identities=26% Similarity=0.352 Sum_probs=203.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----hh-----------h-----hccC------CCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS-----------T-----CVGT------LEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~-----------~-----~~g~------~~~~ 114 (499)
..+||+|||||+||++||..|++.|.+|+|||++ .+..+-.. +. . ..|. .+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 3589999999999999999999999999999986 33222100 00 0 0010 0000
Q ss_pred cccc-------chhhhccccccCCCeEEEEEEEEEEECC-----CCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc
Q 010845 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTD-----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (499)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~ 182 (499)
.+.. .+......+....++++++++++.+|.. .+.+.+...+ + +..++.||+||||||+.|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~-g------~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETET-G------ENEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCC-C------ceEEEEcCEEEEeCCCCC
Confidence 1100 0111111223346899999999999876 3355554311 1 124799999999999998
Q ss_pred cCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcC
Q 010845 183 STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (499)
Q Consensus 183 ~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~ 262 (499)
..+ ||.......+.+..++..+ ...| ++++|||||++|+|+|..|++++
T Consensus 155 ~~~--p~~~~~~~~~~~~~~~~~~----------~~~~----------~~vvIIGgG~~G~E~A~~l~~~g--------- 203 (472)
T PRK05976 155 VEL--PGLPFDGEYVISSDEALSL----------ETLP----------KSLVIVGGGVIGLEWASMLADFG--------- 203 (472)
T ss_pred CCC--CCCCCCCceEEcchHhhCc----------cccC----------CEEEEECCCHHHHHHHHHHHHcC---------
Confidence 654 3332111111122222211 1122 49999999999999999999876
Q ss_pred CCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe---CCeE---EECCC--cEEeeeEEEEcCC
Q 010845 263 HVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD---SQKL---ILNDG--TEVPYGLLVWSTG 332 (499)
Q Consensus 263 ~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~---~~~v---~~~~g--~~i~~D~vi~a~G 332 (499)
.+|+++++. +++|.+++++.+.+.+.|++.||+++++ +|.+++ ++++ .+.+| +++++|.+|+|+|
T Consensus 204 -----~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G 278 (472)
T PRK05976 204 -----VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVG 278 (472)
T ss_pred -----CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeC
Confidence 899999987 6889999999999999999999999999 898886 3433 23456 3699999999999
Q ss_pred CCcch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 333 VGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 333 ~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
.+|+. . ++..++.. .+|+|.||+++|+ +.|+|||+|||+. . +++++.|.+||+.+|.||.
T Consensus 279 ~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiGD~~~------~---~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 279 RRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIGDVIG------E---PQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred CccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEeeecCC------C---cccHHHHHHHHHHHHHHHc
Confidence 99984 2 23445544 4688999999999 8999999999984 2 6789999999999999975
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=279.50 Aligned_cols=289 Identities=20% Similarity=0.189 Sum_probs=202.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC---cccccchhhhhccC---CCCCccccchhhhccccccCCCe
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---MVFTPLLASTCVGT---LEFRSVAEPIARIQPAISREPGS 133 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~---~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~ 133 (499)
.+.++|+|||||||||+||..|++.|+++++||.... +.+.+..+.+. +. +....+...+... ....+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~ 78 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-GDPNDLTGPLLMERMHEH----ATKFET 78 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCC-CCCCCCCHHHHHHHHHHH----HHHCCC
Confidence 4568999999999999999999999999999985421 11111111111 11 1111111122222 222334
Q ss_pred EEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHH
Q 010845 134 YFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 134 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~ 213 (499)
.+..++|+.|+...+.+++... . ..+.||+||+|||+.|+.|++||.+.+. .+.+........
T Consensus 79 ~~~~~~v~~v~~~~~~~~v~~~--~--------~~~~~d~vilAtG~~~~~~~i~g~~~~~--~~~v~~~~~~~~----- 141 (321)
T PRK10262 79 EIIFDHINKVDLQNRPFRLTGD--S--------GEYTCDALIIATGASARYLGLPSEEAFK--GRGVSACATCDG----- 141 (321)
T ss_pred EEEeeEEEEEEecCCeEEEEec--C--------CEEEECEEEECCCCCCCCCCCCCHHHcC--CCcEEEeecCCH-----
Confidence 5666788889888877766541 1 2689999999999999999999964311 111110000000
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~ 293 (499)
.....++|+|||+|++|+|+|..|++.+ .+|+++++...++ .++.+.+.+.+.
T Consensus 142 ------------~~~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~ 194 (321)
T PRK10262 142 ------------FFYRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDK 194 (321)
T ss_pred ------------HHcCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhh
Confidence 0123469999999999999999999877 8999999874332 346678888899
Q ss_pred HHhCCCEEEeC-ceEEEeCC-----eEEECCC------cEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCC-----
Q 010845 294 LSKSGVRLVRG-IVKDVDSQ-----KLILNDG------TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE----- 356 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~-----~v~~~~g------~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~----- 356 (499)
|++.||+++++ .+.+++++ .|++.++ +++++|.|||++|.+|+..+...++.+ ++|+|.||+
T Consensus 195 l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~-~~g~i~vd~~~~~~ 273 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGN 273 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccc-cCCEEEECCCCccc
Confidence 99999999998 89999775 3666432 479999999999999995433335655 458899997
Q ss_pred CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 357 ~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+++| +.|+|||+|||+.. ..++...|+.+|..||..|.+.+.
T Consensus 274 ~~~t-~~~~VyA~GD~~~~--------~~~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 274 ATQT-SIPGVFAAGDVMDH--------IYRQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred cccc-CCCCEEECeeccCC--------CcceEEEEehhHHHHHHHHHHHHH
Confidence 6787 99999999999952 144556699999999999999886
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=294.96 Aligned_cols=343 Identities=19% Similarity=0.201 Sum_probs=223.0
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010845 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+.-++|+|.|+|+..|.+...+. ...|..+++|..+........ ... .+.....++|+|||||+||+++|..|+
T Consensus 89 ~~~~~g~vC~~~Ce~~C~~~~~~~-~v~i~~l~r~~~~~~~~~~~~---~~~-~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 89 FPEFTGRVCPAPCEGACTLNINFG-PVTIKNIERYIIDKAFEEGWV---KPD-PPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred hhHHhcCcCCchhHHhccCCCCCC-CccHHHHHHHHHHHHHHcCCC---CCC-CCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 556789999999999999998665 478888888887653211100 011 111234579999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010845 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+.+....... . +..........+......+. ..++.++.++....+.. ...
T Consensus 164 ~~G~~V~vie~~~~~GG~l~-~----gip~~~~~~~~~~~~~~~~~-~~gv~~~~~~~v~~~~~-----~~~-------- 224 (471)
T PRK12810 164 RAGHKVTVFERADRIGGLLR-Y----GIPDFKLEKEVIDRRIELME-AEGIEFRTNVEVGKDIT-----AEE-------- 224 (471)
T ss_pred hCCCcEEEEecCCCCCceee-e----cCCcccCCHHHHHHHHHHHH-hCCcEEEeCCEECCcCC-----HHH--------
Confidence 99999999999876532210 0 11111100011111111122 24677766554432211 111
Q ss_pred CCceeeeeCCeEEEcCCCC-ccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHH-HhhcCCCCCCHHHHhccccEEEeCcC
Q 010845 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLN-LMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~-~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
....||+||+|||+. +..+++||.+ .+++. +..+....... ......+ ......++|+|||||
T Consensus 225 ----~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~------~~~~l~~~~~~~~~~~~~~----~~~~~gk~VvVIGgG 290 (471)
T PRK12810 225 ----LLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHF------AMDFLIQNTRRVLGDETEP----FISAKGKHVVVIGGG 290 (471)
T ss_pred ----HHhhCCEEEEecCCCCCCcCCCCCccCCCcEE------HHHHHHHHHhhhccccccc----cccCCCCEEEEECCc
Confidence 135799999999997 7778899964 22222 11111110000 0000000 001235699999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCH--------HHHHHHHHHHHhCCCEEEeC-ceEEEe
Q 010845 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD--------RLRHYATTQLSKSGVRLVRG-IVKDVD 310 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~--------~~~~~~~~~l~~~gV~v~~~-~v~~v~ 310 (499)
++|+|+|..+.+.+. .+|++++.... +.... .......+.+++.||+++++ .+.++.
T Consensus 291 ~~g~e~A~~~~~~ga-------------~~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~ 356 (471)
T PRK12810 291 DTGMDCVGTAIRQGA-------------KSVTQRDIMPM-PPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356 (471)
T ss_pred HHHHHHHHHHHHcCC-------------CeEEEccccCC-CccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE
Confidence 999999998877652 47886654432 21111 00111345677889999998 788886
Q ss_pred C--Ce---EEE-----CCC---------cEEeeeEEEEcCCCCcc--hhcccCCCCCCCCCceeeC-CCCCCCCCCCeEE
Q 010845 311 S--QK---LIL-----NDG---------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EWLRVPSVQDVFA 368 (499)
Q Consensus 311 ~--~~---v~~-----~~g---------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd-~~l~~~~~~~Ifa 368 (499)
. +. |.+ .+| +++++|.||+|+|+.|+ .+++.++++.+++|++.|| ++++| +.|+|||
T Consensus 357 ~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~T-s~~gVfa 435 (471)
T PRK12810 357 GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQT-SNPKVFA 435 (471)
T ss_pred ccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccC-CCCCEEE
Confidence 3 22 222 122 57999999999999997 3778888888889999998 78998 9999999
Q ss_pred eccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 369 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 369 ~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|||+. + +.++..|+.||+.||.+|..++.
T Consensus 436 ~GD~~~-----g----~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 436 AGDMRR-----G----QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccccCC-----C----chhHHHHHHHHHHHHHHHHHHHh
Confidence 999995 1 55788999999999999999886
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=287.55 Aligned_cols=281 Identities=23% Similarity=0.332 Sum_probs=204.2
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chhh----------hhccCCCC-Cccccchhh
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLAS----------TCVGTLEF-RSVAEPIAR 122 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~~----------~~~g~~~~-~~~~~~~~~ 122 (499)
+|+|||||+||++||..|++.|.+|+|||+++. ... | ++.. ...|.... .....++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~-GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL-GGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc-cccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 799999999999999999999999999998742 111 1 1000 01111100 011111111
Q ss_pred h--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC
Q 010845 123 I--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (499)
Q Consensus 123 ~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip 188 (499)
+ ...+....+++++++++..+|. +.+.+.. .++ ..++.||+||||||+.|..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~--~~v~v~~-~~~-------~~~~~~d~lviATGs~p~~~p~~ 150 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD--HRVRVEY-GDK-------EEVVDAEQFIIAAGSEPTELPFA 150 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC--CEEEEee-CCC-------cEEEECCEEEEeCCCCCCCCCCC
Confidence 1 1112334688999999988864 4454443 111 24799999999999999887777
Q ss_pred Cccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 189 GVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 189 G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
+.+. ..++ ..++. .....| ++++|||||++|+|+|..+.+++
T Consensus 151 ~~~~~~v~~---~~~~~----------~~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g-------------- 193 (458)
T PRK06912 151 PFDGKWIIN---SKHAM----------SLPSIP----------SSLLIVGGGVIGCEFASIYSRLG-------------- 193 (458)
T ss_pred CCCCCeEEc---chHHh----------CccccC----------CcEEEECCCHHHHHHHHHHHHcC--------------
Confidence 7642 2222 12221 111222 48999999999999999998776
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEEC-CC--cEEeeeEEEEcCCCCcch-h-
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILN-DG--TEVPYGLLVWSTGVGPST-L- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~~~-~g--~~i~~D~vi~a~G~~p~~-~- 338 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .+.+. +| +++++|.||+|+|.+|+. .
T Consensus 194 ~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l 273 (458)
T PRK06912 194 TKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQL 273 (458)
T ss_pred CeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCC
Confidence 899999986 6889899999999999999999999999 89888754 34443 34 369999999999999994 2
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++..++..+++| |.||+++|| +.|||||+|||+. . ++++..|.+||+.+|.||.
T Consensus 274 ~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~------~---~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 274 NLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIG------G---IQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred CchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCC------C---cccHHHHHHHHHHHHHHHc
Confidence 345677777766 999999999 8999999999994 2 6789999999999999975
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=308.62 Aligned_cols=341 Identities=18% Similarity=0.178 Sum_probs=222.0
Q ss_pred ccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010845 3 LFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+.-++|+|.+ +|+..|.+.........+..++++..+..... .....+.......++|+|||||+|||+||..
T Consensus 374 ~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~----~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~ 449 (752)
T PRK12778 374 LPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERES----GNISVPEVAEKNGKKVAVIGSGPAGLSFAGD 449 (752)
T ss_pred chhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHh----CCCCCCCCCCCCCCEEEEECcCHHHHHHHHH
Confidence 56678999997 89999999987623477777777776542110 0011111122356799999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010845 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++|+|||+.+.+.... .+....-.+ +.++ +......+.. .++++..+... .+.+++++
T Consensus 450 l~~~G~~V~v~e~~~~~GG~l-~~gip~~rl-p~~~---~~~~~~~l~~-~gv~~~~~~~v-----~~~v~~~~------ 512 (752)
T PRK12778 450 LAKRGYDVTVFEALHEIGGVL-KYGIPEFRL-PKKI---VDVEIENLKK-LGVKFETDVIV-----GKTITIEE------ 512 (752)
T ss_pred HHHCCCeEEEEecCCCCCCee-eecCCCCCC-CHHH---HHHHHHHHHH-CCCEEECCCEE-----CCcCCHHH------
Confidence 999999999999976543221 111110011 1111 1111111222 46777665433 22333332
Q ss_pred cCCCceeeeeCCeEEEcCCC-CccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCc
Q 010845 161 TLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGg 238 (499)
.....||+||||||+ .|+.+++||.+ +.+++. .+....... .....+. ........++|+||||
T Consensus 513 -----l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~---~~~l~~~~~-----~~~~~~~-~~~~~~~gk~VvVIGg 578 (752)
T PRK12778 513 -----LEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSS---NEYLTRVNL-----MDAASPD-SDTPIKFGKKVAVVGG 578 (752)
T ss_pred -----HhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEH---HHHHHHHhh-----ccccccc-ccCcccCCCcEEEECC
Confidence 124679999999998 58888999964 223222 222211110 0000000 0001124579999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C
Q 010845 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q 312 (499)
Q Consensus 239 G~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~ 312 (499)
|++|+|+|..+.+++ .+ |+++++.. .+|....++ +.+++.||+++.+ .+.++.. +
T Consensus 579 G~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~ 639 (752)
T PRK12778 579 GNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLADEK 639 (752)
T ss_pred cHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEECCC
Confidence 999999999998876 54 99999752 344332221 3467789999987 6666642 1
Q ss_pred ----eEEEC---------CC-----------cEEeeeEEEEcCCCCcch-hcccC-CCCCCCCCceeeCCCCCCCCCCCe
Q 010845 313 ----KLILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSL-DLPKSPGGRIGIDEWLRVPSVQDV 366 (499)
Q Consensus 313 ----~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~-~~~~~-~l~~~~~G~i~vd~~l~~~~~~~I 366 (499)
+|.+. +| .+++||.||+|+|+.|+. ++... +++++++|+|.||++++| +.|+|
T Consensus 640 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~gV 718 (752)
T PRK12778 640 GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQS-SIPGI 718 (752)
T ss_pred CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCC-CCCCE
Confidence 23331 12 269999999999999995 44443 688888899999999998 99999
Q ss_pred EEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 367 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 367 fa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
||+|||+. | +.++..|+.+|+.||.+|.+.+.
T Consensus 719 fA~GD~~~-----g----~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 719 YAGGDIVR-----G----GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred EEeCCccC-----C----cHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999995 2 67899999999999999998875
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=305.45 Aligned_cols=344 Identities=17% Similarity=0.185 Sum_probs=221.5
Q ss_pred ccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCCccc--cccCCC-CCCCCCCCCcEEEECCchHHHHH
Q 010845 3 LFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQL--TQYSGL-GPTKANEKPRVVVLGSGWAGCRL 77 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~VvIIGgG~aGl~a 77 (499)
|+--++|+|.+ +|+.+|.+. + ....|..+.+|..+........ ...... .+......++|+|||||||||+|
T Consensus 245 ~p~~~GrVCp~~~~CE~~C~~~--~-~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsa 321 (944)
T PRK12779 245 LPNVTGRVCPQELQCQGVCTHT--K-RPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLIN 321 (944)
T ss_pred hhHHhcCcCCCccCHHHhccCC--C-cCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHH
Confidence 45568999999 699999988 3 3577888887766542100000 000000 11112346899999999999999
Q ss_pred HHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecC
Q 010845 78 MKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTD 157 (499)
Q Consensus 78 A~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~ 157 (499)
|.+|++.|++|||||+.+...... ..|.+..+.-..-+......+. ..++.|..+...+ +.+++++.
T Consensus 322 A~~Lar~G~~VtVfE~~~~~GG~l-----~yGIP~~rlp~~vi~~~i~~l~-~~Gv~f~~n~~vG-----~dit~~~l-- 388 (944)
T PRK12779 322 AYLLAVEGFPVTVFEAFHDLGGVL-----RYGIPEFRLPNQLIDDVVEKIK-LLGGRFVKNFVVG-----KTATLEDL-- 388 (944)
T ss_pred HHHHHHCCCeEEEEeeCCCCCceE-----EccCCCCcChHHHHHHHHHHHH-hhcCeEEEeEEec-----cEEeHHHh--
Confidence 999999999999999987654321 1122221111111111112222 2577887765543 33444431
Q ss_pred ccccCCCceeeeeCCeEEEcCCCC-ccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEE
Q 010845 158 ELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235 (499)
Q Consensus 158 ~~~~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvV 235 (499)
....||+||||||+. |+.++|||.+ +++++ ..+.....+... ... .... .+......++|+|
T Consensus 389 ---------~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~---a~dfL~~~~~~~-~~~-~~~~--~~~~~~~Gk~VvV 452 (944)
T PRK12779 389 ---------KAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMS---ANEFLTRVNLMR-GLD-DDYE--TPLPEVKGKEVFV 452 (944)
T ss_pred ---------ccccCCEEEEeCCCCCCCcCCCCCCcCcCcEE---HHHHHHHHHhhc-ccc-cccc--ccccccCCCEEEE
Confidence 245799999999995 8889999964 22222 222221111100 000 0000 0000124579999
Q ss_pred eCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC
Q 010845 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ 312 (499)
Q Consensus 236 vGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~ 312 (499)
||||++|+|+|..+.+.+ .+|+++++.. .+|....++ .+ ..+.||+++.+ .+.++..+
T Consensus 453 IGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e~----~~-a~eeGV~~~~~~~p~~i~~d 513 (944)
T PRK12779 453 IGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEEL----HH-ALEEGINLAVLRAPREFIGD 513 (944)
T ss_pred ECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHHH----HH-HHHCCCEEEeCcceEEEEec
Confidence 999999999999999887 7899998762 444333222 22 24569999987 67776432
Q ss_pred ----eE---EE---------C--------CC--cEEeeeEEEEcCCCCcchhcc--cCCCCCCCCCceeeCC-CCCCCCC
Q 010845 313 ----KL---IL---------N--------DG--TEVPYGLLVWSTGVGPSTLVK--SLDLPKSPGGRIGIDE-WLRVPSV 363 (499)
Q Consensus 313 ----~v---~~---------~--------~g--~~i~~D~vi~a~G~~p~~~~~--~~~l~~~~~G~i~vd~-~l~~~~~ 363 (499)
.| .+ . +| .+++||.||+|+|+.|++.+. ..+++.+++|.|.||+ .++| +.
T Consensus 514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~T-s~ 592 (944)
T PRK12779 514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRT-SI 592 (944)
T ss_pred CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCcc-CC
Confidence 12 11 1 22 369999999999999996443 3467888889999997 4787 99
Q ss_pred CCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 364 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 364 ~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|+|||+|||+. | +.++..|+.+|+.||.+|..++.
T Consensus 593 pgVFAaGD~~~-----G----~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 593 KGVYSGGDAAR-----G----GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCEEEEEcCCC-----C----hHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999995 2 66899999999999999998876
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=300.84 Aligned_cols=333 Identities=19% Similarity=0.209 Sum_probs=220.3
Q ss_pred ccccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhc
Q 010845 2 SLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGI 81 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L 81 (499)
-|+..++|+|.|+|+..|.+...+.| ..++.+.+|..+....... ...+.......++|+|||||+|||++|..|
T Consensus 138 p~p~~~grvC~~~Ce~~C~r~~~~~~-v~i~~l~r~~~~~~~~~~~----~~~~~~~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 138 PLPGILGRICPAPCEEACRRHGVDEP-VSICALKRYAADRDMESAE----RYIPERAPKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred CccceeeCCcCchhhHHHcCCCCCCC-cchhHHHHHHHHHHHhcCc----ccCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 36677899999999999999877654 6678788887654221000 001111123457999999999999999999
Q ss_pred cCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCcccc
Q 010845 82 DTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRT 161 (499)
Q Consensus 82 ~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~ 161 (499)
++.|++|+|||+++........ .. .....+..+. ......+. ..++.+..+++.+++ +.++.
T Consensus 213 a~~G~~Vtv~e~~~~~GG~l~~-gi-p~~~~~~~~~---~~~~~~l~-~~Gv~i~~~~~v~~d-----v~~~~------- 274 (652)
T PRK12814 213 LRKGHDVTIFDANEQAGGMMRY-GI-PRFRLPESVI---DADIAPLR-AMGAEFRFNTVFGRD-----ITLEE------- 274 (652)
T ss_pred HHCCCcEEEEecCCCCCceeee-cC-CCCCCCHHHH---HHHHHHHH-HcCCEEEeCCcccCc-----cCHHH-------
Confidence 9999999999998765322110 00 0000111111 11111122 245666555443322 11111
Q ss_pred CCCceeeeeCCeEEEcCCCCc-cCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcC
Q 010845 162 LEPWKFKISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 162 ~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
....||+||||||+.+ ..+++||.+. .++ .+..+..... .. ......++|+|||||
T Consensus 275 -----~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~------~~~~~l~~~~----~~-------~~~~~gk~VvVIGgG 332 (652)
T PRK12814 275 -----LQKEFDAVLLAVGAQKASKMGIPGEELPGVI------SGIDFLRNVA----LG-------TALHPGKKVVVIGGG 332 (652)
T ss_pred -----HHhhcCEEEEEcCCCCCCCCCCCCcCcCCcE------eHHHHHHHhh----cC-------CcccCCCeEEEECCC
Confidence 1235999999999985 4678898642 221 1111111110 00 011235799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE
Q 010845 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL 314 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v 314 (499)
++|+|+|..+.+.+. .+|+++++. ..+|..+.++. +. .+.||+++.+ .+.++.. +.+
T Consensus 333 ~~a~e~A~~l~~~Ga-------------~~Vtlv~r~~~~~mpa~~~ei~----~a-~~eGV~i~~~~~~~~i~~~~~~~ 394 (652)
T PRK12814 333 NTAIDAARTALRLGA-------------ESVTILYRRTREEMPANRAEIE----EA-LAEGVSLRELAAPVSIERSEGGL 394 (652)
T ss_pred HHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH----HH-HHcCCcEEeccCcEEEEecCCeE
Confidence 999999999887662 479999976 35665544332 22 3569999987 6666652 221
Q ss_pred -----EEC---------------CCc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCC-CCCCCCCCCeEEec
Q 010845 315 -----ILN---------------DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDE-WLRVPSVQDVFAVG 370 (499)
Q Consensus 315 -----~~~---------------~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~-~l~~~~~~~Ifa~G 370 (499)
.++ +|+ ++++|.||+++|+.|+ .++...+++++.+|+|.||+ +++| +.|+|||+|
T Consensus 395 ~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~T-s~pgVfA~G 473 (652)
T PRK12814 395 ELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQT-SVAGVFAGG 473 (652)
T ss_pred EEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcC-CCCCEEEcC
Confidence 111 122 5999999999999999 47777788888889999997 4777 999999999
Q ss_pred cccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 371 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 371 D~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
||+. + +.++..|++||+.||.+|..++.
T Consensus 474 Dv~~-----g----~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 474 DCVT-----G----ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CcCC-----C----chHHHHHHHHHHHHHHHHHHHHc
Confidence 9984 1 67889999999999999999987
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=280.82 Aligned_cols=286 Identities=21% Similarity=0.285 Sum_probs=204.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcC------CCCcccc-------cc---hh-----h-h-----hccCCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP------RNHMVFT-------PL---LA-----S-T-----CVGTLEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~------~~~~~~~-------~~---~~-----~-~-----~~g~~~~~ 114 (499)
.+||+|||||+||++||.++++.|.+|+|||+ ...+... |. +. . . ..|. ...
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~-~~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI-HVD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc-cCC
Confidence 57999999999999999999999999999998 1221111 11 00 0 0 0011 111
Q ss_pred ccccch--------------hhhccccccCCCeEEEEEEEEEEECC--CCEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 115 SVAEPI--------------ARIQPAISREPGSYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 115 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
....++ +.....+.+..++.++.+++..++.. .+.|.+... + ..+++||+|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~--~-------~~~~~~d~lViAT 153 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGE--D-------ETVITAKHVIIAT 153 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecC--C-------CeEEEeCEEEEeC
Confidence 100011 11111233346889999999888743 455655421 1 1379999999999
Q ss_pred CCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHH
Q 010845 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (499)
Q Consensus 179 G~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~ 258 (499)
|+.|..++..+.... .+.+..+... .... .++|+|||+|++|+|+|..+.+++
T Consensus 154 Gs~p~~~p~~~~~~~--~~~~~~~~~~----------~~~~----------~~~vvVvGgG~~g~E~A~~l~~~g----- 206 (475)
T PRK06327 154 GSEPRHLPGVPFDNK--IILDNTGALN----------FTEV----------PKKLAVIGAGVIGLELGSVWRRLG----- 206 (475)
T ss_pred CCCCCCCCCCCCCCc--eEECcHHHhc----------cccc----------CCeEEEECCCHHHHHHHHHHHHcC-----
Confidence 999865422221111 1111111111 1112 259999999999999999998876
Q ss_pred HhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEECC--C--cEEeeeEEE
Q 010845 259 QRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILND--G--TEVPYGLLV 328 (499)
Q Consensus 259 ~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~~--g--~~i~~D~vi 328 (499)
.+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|.+++.+ . +.+.+ | +++++|.++
T Consensus 207 ---------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl 277 (475)
T PRK06327 207 ---------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLI 277 (475)
T ss_pred ---------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEE
Confidence 899999987 6888889999999999999999999999 89888643 3 34444 3 479999999
Q ss_pred EcCCCCcch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 329 WSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 329 ~a~G~~p~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++|.+|+. .++.++++++++|+|.||+++|| +.|+|||+|||+. . |++++.|..||+.+|.||.
T Consensus 278 ~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~------~---~~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 278 VSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVR------G---PMLAHKAEEEGVAVAERIA 345 (475)
T ss_pred EccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccC------C---cchHHHHHHHHHHHHHHHc
Confidence 999999994 24567888888999999999999 8999999999994 1 6789999999999999985
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=279.50 Aligned_cols=280 Identities=21% Similarity=0.289 Sum_probs=201.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chh-----hhh-----ccC------CCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLA-----STC-----VGT------LEFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~-----~~~-----~g~------~~~~~ 115 (499)
++||+|||||++|..+|..+ .|.+|+|||++. +... | ++. ... .|. +++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 47999999999999987654 599999999853 2111 1 000 000 010 11111
Q ss_pred cccch-----hhhc----cccc--cCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 116 VAEPI-----ARIQ----PAIS--REPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 116 ~~~~~-----~~~~----~~~~--~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+.... ..+. .... +..+++++.++..-+ +.+.|.+.+ + .++.||+||||||+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~~~---g--------~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRTGD---G--------EEITGDQIVIAAGSRPYI 145 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEECC---C--------cEEEeCEEEEEECCCCCC
Confidence 11111 0110 0011 226788888877655 456776643 2 368999999999999987
Q ss_pred CCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010845 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (499)
Q Consensus 185 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~ 264 (499)
|++++.. ...+.+.+++..+.. .| ++++|||||++|+|+|..|..++
T Consensus 146 p~~~~~~--~~~~~~~~~~~~l~~----------~~----------k~vvVIGgG~ig~E~A~~l~~~G----------- 192 (452)
T TIGR03452 146 PPAIADS--GVRYHTNEDIMRLPE----------LP----------ESLVIVGGGYIAAEFAHVFSALG----------- 192 (452)
T ss_pred CCCCCCC--CCEEEcHHHHHhhhh----------cC----------CcEEEECCCHHHHHHHHHHHhCC-----------
Confidence 7644321 223455555544321 12 49999999999999999998877
Q ss_pred CCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcCCCCcch-
Q 010845 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 265 ~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~- 337 (499)
.+|+++++. .+++.+++++.+.+.+.+ +.||+++++ +|.+++. ++ +.+.+|+++++|.|++++|.+|+.
T Consensus 193 ---~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 193 ---TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred ---CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 899999987 688889999988887755 468999998 8888863 33 455678899999999999999995
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
+ ++..+++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+++|+||..
T Consensus 269 ~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 269 LLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSP---------YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCc---------ccChhHHHHHHHHHHHHhcC
Confidence 4 3556888888999999999998 99999999999951 57789999999999999863
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=286.21 Aligned_cols=284 Identities=19% Similarity=0.197 Sum_probs=197.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhhhhccC--CCCCccccchhhhccccccCCCe
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LASTCVGT--LEFRSVAEPIARIQPAISREPGS 133 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~ 133 (499)
...++|+|||||+||++||.+|++.|++|+||++. +..++. +..+ .+. .....+...+.+. +.. .++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~---l~~-~gv 282 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENL-ISVPYTTGSQLAANLEEH---IKQ-YPI 282 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccc-cccCCCCHHHHHHHHHHH---HHH-hCC
Confidence 44689999999999999999999999999999753 221211 1111 011 0111111222222 222 467
Q ss_pred EEEE-EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHH
Q 010845 134 YFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL 212 (499)
Q Consensus 134 ~~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~ 212 (499)
.++. .+|++++.+.+.+.+... ++ ..+.||+||+|||+.++.+++||..++. ...+.........
T Consensus 283 ~i~~~~~V~~I~~~~~~~~v~~~-~g--------~~i~~d~lIlAtGa~~~~~~ipG~~~~~--~~~v~~~~~~~~~--- 348 (515)
T TIGR03140 283 DLMENQRAKKIETEDGLIVVTLE-SG--------EVLKAKSVIVATGARWRKLGVPGEKEYI--GKGVAYCPHCDGP--- 348 (515)
T ss_pred eEEcCCEEEEEEecCCeEEEEEC-CC--------CEEEeCEEEECCCCCcCCCCCCCHHHcC--CCeEEEeeccChh---
Confidence 7665 588999877655544431 12 3799999999999999989999964321 1100000000000
Q ss_pred HHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHH
Q 010845 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292 (499)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~ 292 (499)
....++|+|||||++|+|+|..|+..+ .+||++++.+.+. ....+.+
T Consensus 349 --------------~~~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~ 395 (515)
T TIGR03140 349 --------------FFKGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQD 395 (515)
T ss_pred --------------hcCCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHH
Confidence 122469999999999999999998876 8999999764221 1244566
Q ss_pred HHHh-CCCEEEeC-ceEEEeCC-----eEEECC---C--cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCC
Q 010845 293 QLSK-SGVRLVRG-IVKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLR 359 (499)
Q Consensus 293 ~l~~-~gV~v~~~-~v~~v~~~-----~v~~~~---g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~ 359 (499)
.+++ .||+++.+ .+.++.++ +|.+++ + +++++|.|++++|..|+ .+++.. ++.+++|+|.||+++|
T Consensus 396 ~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~ 474 (515)
T TIGR03140 396 KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGR 474 (515)
T ss_pred HHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCC
Confidence 7776 59999999 88888765 366643 2 46999999999999999 466655 7778889999999999
Q ss_pred CCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 360 ~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
| +.|+|||+|||+..+ .+++..|+.+|..||.+|..++.
T Consensus 475 T-s~p~IyAaGDv~~~~--------~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 475 T-SVPGIFAAGDVTTVP--------YKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred C-CCCCEEEcccccCCc--------cceEEEEEccHHHHHHHHHHHHh
Confidence 9 999999999999531 24566799999999999988764
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=285.44 Aligned_cols=286 Identities=17% Similarity=0.155 Sum_probs=195.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhh---ccC--CCCCccccchhhhccccccCCCeEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---VGT--LEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~---~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
.++|+|||||||||+||.+|++.|++|+|||++.. ..+....... .+. .....+...++. .....++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~----~~~~~gv~~~ 78 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQ----QAQDFGVKFL 78 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHH----HHHHcCCEEe
Confidence 58999999999999999999999999999998643 2221110000 111 011112222222 2223467888
Q ss_pred EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
.++|+.++.+.+...+... + ..+.||+||||||+.|+.|++||.+... ...+........
T Consensus 79 ~~~V~~i~~~~~~~~V~~~-~---------g~~~a~~lVlATGa~p~~~~ipG~~~~~--~~~v~~~~~~~~-------- 138 (555)
T TIGR03143 79 QAEVLDVDFDGDIKTIKTA-R---------GDYKTLAVLIATGASPRKLGFPGEEEFT--GRGVAYCATCDG-------- 138 (555)
T ss_pred ccEEEEEEecCCEEEEEec-C---------CEEEEeEEEECCCCccCCCCCCCHHHhC--CceEEEEeecCh--------
Confidence 8899999987654444331 1 2588999999999999999999964311 111000000000
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHh
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~ 296 (499)
.....++|+|||||++|+|+|..|.+++ .+|+++++.+.+. ..... ..+.++.
T Consensus 139 ---------~~~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~-~~~~~---~~~~~~~ 191 (555)
T TIGR03143 139 ---------EFFTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFT-CAKLI---AEKVKNH 191 (555)
T ss_pred ---------hhcCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCccc-cCHHH---HHHHHhC
Confidence 0123469999999999999999998776 8999999874221 12222 2333455
Q ss_pred CCCEEEeC-ceEEEeCCe----EEE---CCCcEE----eeeE----EEEcCCCCcchhcccCCCCCCCCCceeeCCCCCC
Q 010845 297 SGVRLVRG-IVKDVDSQK----LIL---NDGTEV----PYGL----LVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV 360 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~~----v~~---~~g~~i----~~D~----vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~ 360 (499)
.||+++.+ .|.++.++. +.+ .+|++. ++|. |+|++|++|+..+...+++++++|+|.||+++||
T Consensus 192 ~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~T 271 (555)
T TIGR03143 192 PKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMET 271 (555)
T ss_pred CCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCcccc
Confidence 79999999 899997652 222 356543 3666 9999999999533334677888899999999999
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010845 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
+.|+|||+|||+.. .+..+..|++||+.||.+|.+++..
T Consensus 272 -s~p~IyAaGDv~~~--------~~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 272 -NVPGVYAAGDLRPK--------ELRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred -CCCCEEEceeccCC--------CcchheeHHhhHHHHHHHHHHHHHh
Confidence 99999999999831 1445678999999999999988863
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=275.51 Aligned_cols=290 Identities=24% Similarity=0.384 Sum_probs=239.5
Q ss_pred CCcEEEECCchHHHHHHHhccC---CCCeEEEEcCCCCcccc-cchhhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
+.++||||.|++|..+..++.+ .-++||++-.+++..|. ..+..+..+..+.+++...-.+ ++...++.++.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~d----wy~~~~i~L~~ 78 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRND----WYEENGITLYT 78 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchh----hHHHcCcEEEc
Confidence 4689999999999998877766 45789999999998887 6677777776666555443333 34456777766
Q ss_pred E-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHh
Q 010845 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (499)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (499)
+ +|+.||++++.|+.+. +..+.||.||+||||.|+.+++||.+ ..++.+++++|..++...-
T Consensus 79 ~~~v~~idr~~k~V~t~~-----------g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a----- 142 (793)
T COG1251 79 GEKVIQIDRANKVVTTDA-----------GRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA----- 142 (793)
T ss_pred CCeeEEeccCcceEEccC-----------CcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-----
Confidence 5 9999999999998876 35899999999999999999999986 5788899999988776541
Q ss_pred hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-CCCCHHHHHHHHHH
Q 010845 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-SSFDDRLRHYATTQ 293 (499)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-~~~~~~~~~~~~~~ 293 (499)
+..++.+|||||..|+|+|..|.+.+ .++++++-.+ ++ ..+++.....+.+.
T Consensus 143 ------------r~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 143 ------------RNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRK 196 (793)
T ss_pred ------------hccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHH
Confidence 33347899999999999999999988 8899998763 33 47888899999999
Q ss_pred HHhCCCEEEeC-ceEEEe----CCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeE
Q 010845 294 LSKSGVRLVRG-IVKDVD----SQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~----~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~If 367 (499)
+++.||+++++ ..+++. .+++.++||+++++|+||||+|++|| .+....|++.++ .|.||++||| +.|+||
T Consensus 197 le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~mqT-sdpdIY 273 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYMQT-SDPDIY 273 (793)
T ss_pred HHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC--Ceeecccccc-cCCCee
Confidence 99999999998 444443 24799999999999999999999999 688889999887 5999999999 999999
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010845 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
|+|+|+.+.. ....+...+..||+.+|.++...
T Consensus 274 AvGEcae~~g-----~~yGLVaP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 274 AVGECAEHRG-----KVYGLVAPLYEQAKVLADHLCGG 306 (793)
T ss_pred ehhhHHHhcC-----ccceehhHHHHHHHHHHHHhccC
Confidence 9999998643 23556777999999999998654
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=256.69 Aligned_cols=284 Identities=19% Similarity=0.206 Sum_probs=206.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCCCcccccchhhhhccCCCCCc--cccchhhhccccccCCCeEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
.++||+|||||||||+||.++++.+.+ ++|+|... ...++.......+.+.... ....+.+....+....++.+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~ 80 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE 80 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE
Confidence 468999999999999999999999999 66666542 2222111111111111111 1122333333344457888888
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHHH
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+|..++.....+.+...+ .++.+++||||||..++.|.+||..++ ..+.+...|. .
T Consensus 81 ~~v~~v~~~~~~F~v~t~~----------~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~--------- 140 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDK----------GTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-F--------- 140 (305)
T ss_pred EEEEEEeecCceEEEEECC----------CeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-c---------
Confidence 9999998876444444311 259999999999999999999875421 2223332332 1
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHH
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l 294 (499)
.+.++|+|||||.+++|.|..|...+ .+||+++|.+-+.. .+.+.+.+
T Consensus 141 -------------~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~l 188 (305)
T COG0492 141 -------------FKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVERL 188 (305)
T ss_pred -------------ccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHHH
Confidence 23358999999999999999999988 88999999854433 34455566
Q ss_pred HhC-CCEEEeC-ceEEEeC---CeEEECCC----cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCC
Q 010845 295 SKS-GVRLVRG-IVKDVDS---QKLILNDG----TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (499)
Q Consensus 295 ~~~-gV~v~~~-~v~~v~~---~~v~~~~g----~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~ 364 (499)
++. +|+++.+ .+.++.+ ++|.+++. +++++|-+++++|..|+ .+++..+. ++++|+|.||+.++| +.|
T Consensus 189 ~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~T-svp 266 (305)
T COG0492 189 KKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMET-SVP 266 (305)
T ss_pred HhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCccc-CCC
Confidence 655 8999999 8999988 47788763 37899999999999999 57777766 889999999999999 999
Q ss_pred CeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 365 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 365 ~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|||+|||+..+ .+++..|..+|..||.++.+.+.
T Consensus 267 GifAaGDv~~~~--------~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 267 GIFAAGDVADKN--------GRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred CEEEeEeeccCc--------ccEEeehhhhHHHHHHHHHHHhh
Confidence 999999999631 33677899999999998888775
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=278.29 Aligned_cols=285 Identities=20% Similarity=0.268 Sum_probs=198.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC-Ccccc-------c---chh-----hhh--------ccCC------
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT-------P---LLA-----STC--------VGTL------ 111 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~-~~~~~-------~---~~~-----~~~--------~g~~------ 111 (499)
++||+|||+|++|+.+|..+++.|.+|+|||+.. .+... | ++. ..+ .|..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 5799999999999999999999999999999642 22211 1 000 000 0100
Q ss_pred ------------------CCCccccc-------hhhhc-cccccC------CCeEEEEEEEEEEECCCCEEEEeeecCcc
Q 010845 112 ------------------EFRSVAEP-------IARIQ-PAISRE------PGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (499)
Q Consensus 112 ------------------~~~~~~~~-------~~~~~-~~~~~~------~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 159 (499)
++..+... ++... ..+... .++.++.++..-++ .++|.+.. ++
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~--~~~v~v~~--~g- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVD--KNTIKSEK--SG- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEec--CCeEEEcc--CC-
Confidence 00000011 11100 111111 14677777665554 34455431 11
Q ss_pred ccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcC
Q 010845 160 RTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 160 ~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
.++.||+||||||+.|..|++++.+.. .+.+..++..+. .+| ++|+|||||
T Consensus 271 -------~~i~ad~lIIATGS~P~~P~~~~~~~~--~V~ts~d~~~l~----------~lp----------k~VvIVGgG 321 (659)
T PTZ00153 271 -------KEFKVKNIIIATGSTPNIPDNIEVDQK--SVFTSDTAVKLE----------GLQ----------NYMGIVGMG 321 (659)
T ss_pred -------EEEECCEEEEcCCCCCCCCCCCCCCCC--cEEehHHhhhhh----------hcC----------CceEEECCC
Confidence 478999999999999988876665321 122333333321 122 489999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHH-HhCCCEEEeC-ceEEEeCCe---
Q 010845 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-IVKDVDSQK--- 313 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l-~~~gV~v~~~-~v~~v~~~~--- 313 (499)
++|+|+|..+..++ .+||++++. ++++.+++++.+.+.+.+ ++.||+++++ .|.+++.+.
T Consensus 322 ~iGvE~A~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~ 387 (659)
T PTZ00153 322 IIGLEFMDIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQ 387 (659)
T ss_pred HHHHHHHHHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCce
Confidence 99999999998877 899999986 789999999999999876 6799999999 898887531
Q ss_pred -EEE--CC-------C--------cEEeeeEEEEcCCCCcch-h--cccCCCCCCCCCceeeCCCCCCCC-----CCCeE
Q 010845 314 -LIL--ND-------G--------TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPS-----VQDVF 367 (499)
Q Consensus 314 -v~~--~~-------g--------~~i~~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~-----~~~If 367 (499)
+.+ .+ + +++++|.|+||+|.+||. . ++..++..+ +|+|.||++|||.. .||||
T Consensus 388 ~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IY 466 (659)
T PTZ00153 388 PVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIF 466 (659)
T ss_pred EEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEE
Confidence 433 21 1 379999999999999994 3 356677776 48999999999932 69999
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|+|||+. . +++++.|.+||+.+|+||..
T Consensus 467 AiGDv~g------~---~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 467 CIGDANG------K---QMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred EEEecCC------C---ccCHHHHHHHHHHHHHHHcC
Confidence 9999983 2 67899999999999999964
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=277.29 Aligned_cols=343 Identities=17% Similarity=0.154 Sum_probs=220.3
Q ss_pred cccccccccc--cccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010845 3 LFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+.-++|+|. ++|++.|.+...+.| ..+..+++|..+....... .+.++.. ....++|+|||||++|+++|..
T Consensus 85 ~~~~~grvC~~~~~Ce~~C~~~~~~~~-v~i~~l~r~~~~~~~~~~~---~~~~~~~-~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 85 LPEICGRVCPQDRLCEGACTLNDEFGA-VTIGNLERYITDTALAMGW---RPDLSHV-VPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred chHhhcccCCCCCChHHhCcCCCCCCC-ccHHHHHHHHHHHHHHhCC---CCCCCCc-CCCCCeEEEECCCHHHHHHHHH
Confidence 5567899998 599999999987654 7788888888665432111 1111111 1245799999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010845 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++|+|+|+.+....... .|..........+......+ ...+++++.+.... +.+.+++
T Consensus 160 l~~~G~~V~i~e~~~~~gG~l~-----~gip~~~~~~~~~~~~~~~~-~~~Gv~~~~~~~v~-----~~~~~~~------ 222 (467)
T TIGR01318 160 LARAGVQVVVFDRHPEIGGLLT-----FGIPSFKLDKAVLSRRREIF-TAMGIEFHLNCEVG-----RDISLDD------ 222 (467)
T ss_pred HHHcCCeEEEEecCCCCCceee-----ecCccccCCHHHHHHHHHHH-HHCCCEEECCCEeC-----CccCHHH------
Confidence 9999999999999876532211 01111110000111111112 22466665443211 1121111
Q ss_pred cCCCceeeeeCCeEEEcCCCCcc-CCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCc
Q 010845 161 TLEPWKFKISYDKLVIALGAEAS-TFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~~~~-~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGg 238 (499)
....||.||+|||+.+. .+++||.+. .++. ..+......+.. +.....+.. .......++++|||+
T Consensus 223 ------~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~---a~~~l~~~~~~~--~~~~~~~~~-~~~~~~gk~VvVIGg 290 (467)
T TIGR01318 223 ------LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQ---ALPFLIANTRQL--MGLPESPEE-PLIDVEGKRVVVLGG 290 (467)
T ss_pred ------HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEE---HHHHHHHHHHHh--cCCCccccc-cccccCCCEEEEECC
Confidence 13479999999999864 568898642 2221 111111100000 000000000 000123469999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-
Q 010845 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q- 312 (499)
Q Consensus 239 G~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~- 312 (499)
|++|+|+|..+.+++. .+||++++. . .++..+..+ +.+++.||+++.+ .+.++.. +
T Consensus 291 G~~a~d~A~~a~~~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g 352 (467)
T TIGR01318 291 GDTAMDCVRTAIRLGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDG 352 (467)
T ss_pred cHHHHHHHHHHHHcCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCC
Confidence 9999999999887761 479999975 3 455543332 3467789999998 7878753 1
Q ss_pred e---EEEC---------CC-----------cEEeeeEEEEcCCCCcc--hhcccCCCCCCCCCceeeC----CCCCCCCC
Q 010845 313 K---LILN---------DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID----EWLRVPSV 363 (499)
Q Consensus 313 ~---v~~~---------~g-----------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd----~~l~~~~~ 363 (499)
. |++. +| .++++|.||+++|+.|+ .++...+++++++|+|.|| .+++| +.
T Consensus 353 ~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T-~~ 431 (467)
T TIGR01318 353 RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQT-TN 431 (467)
T ss_pred eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccC-CC
Confidence 1 2321 11 36999999999999997 3666778888888999999 67888 89
Q ss_pred CCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 364 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 364 ~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|+|||+|||+. + +.++..|+.+|+.+|.+|..++.
T Consensus 432 ~gVfa~GD~~~-----~----~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 432 PKIFAGGDAVR-----G----ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCEEEECCcCC-----C----ccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999985 1 56788999999999999988763
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=298.39 Aligned_cols=343 Identities=15% Similarity=0.100 Sum_probs=223.4
Q ss_pred cccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHH
Q 010845 2 SLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMK 79 (499)
Q Consensus 2 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~ 79 (499)
-|+.-++|+|.+ +|+..|.++..+. ...|..+.+|..++...... + .+ ......++|+|||||||||+||.
T Consensus 375 p~p~~~grvCp~~~~Ce~~C~~~~~~~-pv~I~~ler~~~d~~~~~~~----~-~~-~~~~~~~kVaIIG~GPAGLsaA~ 447 (1006)
T PRK12775 375 IFPSICGRVCPQETQCEAQCIIAKKHE-SVGIGRLERFVGDNARAKPV----K-PP-RFSKKLGKVAICGSGPAGLAAAA 447 (1006)
T ss_pred ChHHHhcCcCCCCCCHHHhCcCCCCCC-CeeecHHHHHHHHHHHHcCC----C-CC-CCCCCCCEEEEECCCHHHHHHHH
Confidence 356778999998 8999999998775 48888899987665321110 0 11 11124579999999999999999
Q ss_pred hccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCcc
Q 010845 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (499)
Q Consensus 80 ~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 159 (499)
+|++.|++|+|||+.+...... . .|..........+......+.. .++++..+.+.+. .++++...
T Consensus 448 ~La~~G~~VtV~E~~~~~GG~l-~----~gip~~rl~~e~~~~~~~~l~~-~Gv~~~~~~~vg~-----~~~~~~l~--- 513 (1006)
T PRK12775 448 DLVKYGVDVTVYEALHVVGGVL-Q----YGIPSFRLPRDIIDREVQRLVD-IGVKIETNKVIGK-----TFTVPQLM--- 513 (1006)
T ss_pred HHHHcCCcEEEEecCCCCccee-e----ccCCccCCCHHHHHHHHHHHHH-CCCEEEeCCccCC-----ccCHHHHh---
Confidence 9999999999999987543210 0 1111111111111222222333 5778776654322 23322210
Q ss_pred ccCCCceeeeeCCeEEEcCCCC-ccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeC
Q 010845 160 RTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (499)
Q Consensus 160 ~~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvG 237 (499)
....||+||||||+. |+.++|||.+ +.+++.. +.....+.. .....+. .......+++|+|||
T Consensus 514 -------~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~---~fL~~~~~~----~~~~~~~-~~~~~~~Gk~VvVIG 578 (1006)
T PRK12775 514 -------NDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSAN---EFLTRVNLM----GGDKFPF-LDTPISLGKSVVVIG 578 (1006)
T ss_pred -------hccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHH---HHHHHHHhc----Ccccccc-ccCCccCCCEEEEEC
Confidence 024699999999995 8889999963 2232222 222111100 0000000 000112457999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C
Q 010845 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q 312 (499)
Q Consensus 238 gG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~ 312 (499)
||++|+|+|..+.+++. ..|+++.+. + -++....+ .+.+++.||+++.+ .+.++.. +
T Consensus 579 gG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~ 640 (1006)
T PRK12775 579 AGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAE 640 (1006)
T ss_pred CcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCC
Confidence 99999999999888762 468888765 2 33332211 24567789999988 6677642 2
Q ss_pred ----eEEEC-----------------CC--cEEeeeEEEEcCCCCcch-hccc-CCCCCCCCCceeeCC-----CCCCCC
Q 010845 313 ----KLILN-----------------DG--TEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE-----WLRVPS 362 (499)
Q Consensus 313 ----~v~~~-----------------~g--~~i~~D~vi~a~G~~p~~-~~~~-~~l~~~~~G~i~vd~-----~l~~~~ 362 (499)
+|.+. +| .++++|.||+|+|+.|+. ++.. .++.++++|.|.||+ +++| +
T Consensus 641 G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T-s 719 (1006)
T PRK12775 641 GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST-N 719 (1006)
T ss_pred CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC-C
Confidence 23221 12 269999999999999995 3333 367788889999996 6888 9
Q ss_pred CCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010845 363 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 363 ~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
.|+|||+|||+. | +.++..|+.+|+.||.+|...+..
T Consensus 720 ~pgVFAaGDv~~-----G----~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 720 LPGVFAGGDIVT-----G----GATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCCEEEecCcCC-----C----ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999984 2 678899999999999999999873
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=248.74 Aligned_cols=287 Identities=22% Similarity=0.263 Sum_probs=215.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc---------------cchhhhh-----ccCCC-----C--
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT---------------PLLASTC-----VGTLE-----F-- 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~---------------~~~~~~~-----~g~~~-----~-- 113 (499)
...+.+|||||-+|+++|+..++.|.++.|+|..-....+ ..+.... .|... +
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 4689999999999999999999999999999965221111 0000000 01111 0
Q ss_pred -------CccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 114 -------RSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 114 -------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.....+..+.+..-....+.++.++..-+++.+-.|...+ + ....+++.+++||||.+|.+|+
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d---~------~~~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVND---G------TKIVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecC---C------eeEEEecceEEEEeCCccCCCC
Confidence 01111233333333344678889998888877655555444 1 1245889999999999999999
Q ss_pred CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010845 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 187 ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
|||. +..+..... |++.+.| ++++|||+|++++|+|.-++.++
T Consensus 170 IpG~-E~gidSDgf-------------f~Lee~P----------kr~vvvGaGYIavE~Agi~~gLg------------- 212 (478)
T KOG0405|consen 170 IPGA-ELGIDSDGF-------------FDLEEQP----------KRVVVVGAGYIAVEFAGIFAGLG------------- 212 (478)
T ss_pred CCch-hhccccccc-------------cchhhcC----------ceEEEEccceEEEEhhhHHhhcC-------------
Confidence 9997 444443322 4444555 49999999999999999999988
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCcch--
Q 010845 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPST-- 337 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~-- 337 (499)
.+++++-|. .+|..|++.++..+.+.++.+||++|.+ .++++... .+....|+...+|.++||+|..|++
T Consensus 213 -sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 213 -SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred -CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc
Confidence 899999987 7999999999999999999999999988 67776442 3444566656699999999999994
Q ss_pred -hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 -~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
-+++.|+.++++|.|.||++.+| +.|+||++||++. + ..+.++|+.+|+.+|+.+-.
T Consensus 292 L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~g------k---~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 292 LNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTG------K---INLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred ccchhcceeeCCCCCEEEeccccC-CCCceEEeccccC------c---EecchHHHhhhhhHHHHhhc
Confidence 35667899999999999999999 9999999999993 3 56778899999999876543
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-31 Score=263.33 Aligned_cols=299 Identities=20% Similarity=0.177 Sum_probs=191.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
..++|+|||||++|+++|..|++.|++|+|||+.+........ .........+. +......+.. .++.+..++.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~----~~~~~~~l~~-~~i~~~~~~~ 90 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIPEFRIPIER----VREGVKELEE-AGVVFHTRTK 90 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCcccccCHHH----HHHHHHHHHh-CCeEEecCcE
Confidence 3468999999999999999999999999999998765432111 00000111111 1112222333 3677665533
Q ss_pred E-EEEC----CCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC-CccCCCCCCccc-cCccCCCHHHHHHHHHHHHHH
Q 010845 141 A-GIDT----DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVKE-NATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 141 ~-~id~----~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~ 213 (499)
. .++. ....+...... .+...+.||+||||||+ .+..|++||.+. .++. .......+.......
T Consensus 91 v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~--~~~~~~~~~~~~~~~ 161 (352)
T PRK12770 91 VCCGEPLHEEEGDEFVERIVS-------LEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYS--ALEYLFRIRAAKLGY 161 (352)
T ss_pred EeeccccccccccccccccCC-------HHHHHhhCCEEEEEeCCCCCCcCCCCCccccCcee--HHHHHHHhhhccccc
Confidence 3 3322 11111100000 00124789999999999 477888998742 2221 111111111100000
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCCcCCCCCHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSSFDDRLRHYATT 292 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~~l~~~~~~~~~~~~~ 292 (499)
+.....| ....++++|||+|++|+|+|..+...+ .+ |+++++...... .......+
T Consensus 162 ~~~~~~~------~~~g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~~ 218 (352)
T PRK12770 162 LPWEKVP------PVEGKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEIE 218 (352)
T ss_pred ccccccc------ccCCCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHHH
Confidence 0000111 112469999999999999999998765 54 999987532111 11134456
Q ss_pred HHHhCCCEEEeC-ceEEEeCC----eEEE--------------------CCCcEEeeeEEEEcCCCCcch-hccc-CCCC
Q 010845 293 QLSKSGVRLVRG-IVKDVDSQ----KLIL--------------------NDGTEVPYGLLVWSTGVGPST-LVKS-LDLP 345 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~----~v~~--------------------~~g~~i~~D~vi~a~G~~p~~-~~~~-~~l~ 345 (499)
.|+++||+++++ .+.+++++ .+.+ .+++++++|.+|+++|++|++ +... ++++
T Consensus 219 ~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~ 298 (352)
T PRK12770 219 RLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIE 298 (352)
T ss_pred HHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCce
Confidence 688999999998 78888653 2222 123579999999999999995 4444 7888
Q ss_pred CCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 346 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 346 ~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
++++|+|.||+++++ +.|+|||+|||+. + +..+..|++||+.+|.+|...+.
T Consensus 299 ~~~~g~i~vd~~~~t-~~~~vyaiGD~~~-----~----~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 299 LNRKGEIVVDEKHMT-SREGVFAAGDVVT-----G----PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred ecCCCcEeeCCCccc-CCCCEEEEccccc-----C----cchHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999998 8999999999995 1 56788999999999999988875
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=272.78 Aligned_cols=282 Identities=18% Similarity=0.178 Sum_probs=198.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----chhhhhc-cCCCCCccccchhhhccccccCCCeE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLASTCV-GTLEFRSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (499)
...++|+|||||+||++||.+|++.|++|+||++.. ..+. .+..... ......++...+... +. ..++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~--GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~-~~gv~ 282 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF--GGQVLDTMGIENFISVPETEGPKLAAALEEH---VK-EYDVD 282 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--CCeeeccCcccccCCCCCCCHHHHHHHHHHH---HH-HCCCE
Confidence 346899999999999999999999999999998751 1111 0110000 001111222222222 22 24566
Q ss_pred EEE-EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC---ccCCCHHHHHHHHHHH
Q 010845 135 FFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA---TFLREVHHAQEIRRKL 210 (499)
Q Consensus 135 ~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~---~~~~~~~~~~~~~~~~ 210 (499)
+.. .+|++++.....+.+... ++ .++.||+||+|||+.++.+++||..++. .......+ .
T Consensus 283 i~~~~~V~~I~~~~~~~~V~~~-~g--------~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~-----~-- 346 (517)
T PRK15317 283 IMNLQRASKLEPAAGLIEVELA-NG--------AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCD-----G-- 346 (517)
T ss_pred EEcCCEEEEEEecCCeEEEEEC-CC--------CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccC-----c--
Confidence 554 589999887554444321 12 3789999999999999999999864321 11100000 0
Q ss_pred HHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHH
Q 010845 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (499)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~ 290 (499)
...+.++|+|||||++|+|+|..|+..+ .+|+++++.+.+.. ...+
T Consensus 347 ---------------~~~~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l 392 (517)
T PRK15317 347 ---------------PLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVL 392 (517)
T ss_pred ---------------hhcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc-----cHHH
Confidence 0123469999999999999999999876 89999998743321 2345
Q ss_pred HHHHHh-CCCEEEeC-ceEEEeCC-----eEEEC---CC--cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCC
Q 010845 291 TTQLSK-SGVRLVRG-IVKDVDSQ-----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW 357 (499)
Q Consensus 291 ~~~l~~-~gV~v~~~-~v~~v~~~-----~v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~ 357 (499)
.+.+.+ .||+++.+ .+.++.++ .+.+. +| ++++||.+++++|.+|+ .+++.. +.++++|+|.||++
T Consensus 393 ~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~ 471 (517)
T PRK15317 393 QDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDAR 471 (517)
T ss_pred HHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcC
Confidence 556665 59999999 88888765 25554 23 36999999999999998 476655 77788899999999
Q ss_pred CCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 358 l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|| +.|+|||+|||+..+ .+.+..|+.+|..||.++...+.
T Consensus 472 l~T-s~p~IyAaGDv~~~~--------~k~~~~A~~eG~~Aa~~~~~~l~ 512 (517)
T PRK15317 472 GAT-SVPGVFAAGDCTTVP--------YKQIIIAMGEGAKAALSAFDYLI 512 (517)
T ss_pred CCC-CCCCEEECccccCCC--------CCEEEEhhhhHHHHHHHHHHHHh
Confidence 998 999999999999631 46678899999999999988875
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=281.92 Aligned_cols=341 Identities=18% Similarity=0.162 Sum_probs=208.9
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010845 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|.--++|+|.++|+..|.+.....| ..+..+.++..+........ .........+.++|+|||+|+||+++|..|+
T Consensus 228 ~~~~~g~vC~~~Ce~~C~~~~~~~~-~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~ 303 (604)
T PRK13984 228 LSMVCGRVCTHKCETVCSIGHRGEP-IAIRWLKRYIVDNVPVEKYS---EILDDEPEKKNKKVAIVGSGPAGLSAAYFLA 303 (604)
T ss_pred ccchhhCcCCchHHHhhcccCCCCC-eEeCcHHHHHHhHHHHcCcc---cccCCCcccCCCeEEEECCCHHHHHHHHHHH
Confidence 3456889999999999999976654 66667776665543211110 0001112234678999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010845 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+++........ ......+ +.++ +......+. ..++.++.+.....+ +..+.
T Consensus 304 ~~G~~v~vie~~~~~gG~~~~-~i~~~~~-~~~~---~~~~~~~~~-~~gv~~~~~~~v~~~-----~~~~~-------- 364 (604)
T PRK13984 304 TMGYEVTVYESLSKPGGVMRY-GIPSYRL-PDEA---LDKDIAFIE-ALGVKIHLNTRVGKD-----IPLEE-------- 364 (604)
T ss_pred HCCCeEEEEecCCCCCceEee-cCCcccC-CHHH---HHHHHHHHH-HCCcEEECCCEeCCc-----CCHHH--------
Confidence 999999999998765322111 0000001 1111 111111122 246666554332211 11111
Q ss_pred CCceeeeeCCeEEEcCCCC-ccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcCh
Q 010845 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~ 240 (499)
....||+||+|||+. ++.+++||.+. .++ ...+....+...+ .... ......++|+|||||+
T Consensus 365 ----~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~--~a~~~l~~~~~~~----~~~~------~~~~~~k~VvVIGGG~ 428 (604)
T PRK13984 365 ----LREKHDAVFLSTGFTLGRSTRIPGTDHPDVI--QALPLLREIRDYL----RGEG------PKPKIPRSLVVIGGGN 428 (604)
T ss_pred ----HHhcCCEEEEEcCcCCCccCCCCCcCCcCeE--eHHHHHHHHHhhh----ccCC------CcCCCCCcEEEECCch
Confidence 135799999999987 57788999742 222 1222222222111 0000 0011246999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--
Q 010845 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-- 312 (499)
Q Consensus 241 ~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~-- 312 (499)
+|+|+|..+.+++.. .+ ...+|+++... ..++....+ +.+ +.+.||+++.+ .+.++.. +
T Consensus 429 ~g~e~A~~l~r~~~~----~~----g~~~V~v~~~~r~~~~~~~~~~e----~~~-~~~~GV~i~~~~~~~~i~~~~g~v 495 (604)
T PRK13984 429 VAMDIARSMARLQKM----EY----GEVNVKVTSLERTFEEMPADMEE----IEE-GLEEGVVIYPGWGPMEVVIENDKV 495 (604)
T ss_pred HHHHHHHHHHhcccc----cc----CceEEEEeccccCcccCCCCHHH----HHH-HHHcCCEEEeCCCCEEEEccCCEE
Confidence 999999999876410 00 11467776433 233333222 222 34579999987 6666542 1
Q ss_pred -eEEEC-------------------CCcEEeeeEEEEcCCCCcc-hhcc-cC--CCCCCCCCceeeCCCCCCCCCCCeEE
Q 010845 313 -KLILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SL--DLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 313 -~v~~~-------------------~g~~i~~D~vi~a~G~~p~-~~~~-~~--~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
+|.+. ++.++++|.||+|+|+.|+ .++. .+ +++. ++|+|.||+++|| +.|+|||
T Consensus 496 ~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfA 573 (604)
T PRK13984 496 KGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFA 573 (604)
T ss_pred EEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEE
Confidence 22221 1247999999999999998 3433 22 3444 4688999999999 9999999
Q ss_pred eccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 369 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 369 ~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|||+.. + ....|+.+|+.||.+|.+++.
T Consensus 574 aGD~~~~---------~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 574 GGDIVHG---------P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred ecCcCCc---------h-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999951 3 357799999999999998875
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=282.68 Aligned_cols=342 Identities=16% Similarity=0.149 Sum_probs=219.3
Q ss_pred cccccccccc--cccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010845 3 LFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+--++|+|. ++|+.+|.++..+. ...|..+.+|..+........+ .++. .....++|+|||||+|||++|..
T Consensus 271 ~p~~~grvCp~~~~Ce~~C~~~~~~~-~v~I~~l~r~~~d~~~~~~~~~---~~~~-~~~~~~~VaIIGaGpAGLsaA~~ 345 (654)
T PRK12769 271 LPEITGRVCPQDRLCEGACTLRDEYG-AVTIGNIERYISDQALAKGWRP---DLSQ-VTKSDKRVAIIGAGPAGLACADV 345 (654)
T ss_pred chhHhcccCCCCCChHHhccCCCCCC-CeecCHHHHHHHHHHHHhCCCC---CCcc-cccCCCEEEEECCCHHHHHHHHH
Confidence 5567899998 58999999997765 4888888888766532111111 1111 11245799999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccc-hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCcc
Q 010845 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP-IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 159 (499)
|++.|++|+|||+.+....... . +..... +... +......+ ...++++..+..... .+.++.
T Consensus 346 L~~~G~~V~V~E~~~~~GG~l~-~----gip~~~-l~~~~~~~~~~~~-~~~Gv~~~~~~~v~~-----~i~~~~----- 408 (654)
T PRK12769 346 LARNGVAVTVYDRHPEIGGLLT-F----GIPAFK-LDKSLLARRREIF-SAMGIEFELNCEVGK-----DISLES----- 408 (654)
T ss_pred HHHCCCeEEEEecCCCCCceee-e----cCCCcc-CCHHHHHHHHHHH-HHCCeEEECCCEeCC-----cCCHHH-----
Confidence 9999999999999876433211 0 111111 1111 11111112 224666654432211 111111
Q ss_pred ccCCCceeeeeCCeEEEcCCCCc-cCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeC
Q 010845 160 RTLEPWKFKISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (499)
Q Consensus 160 ~~~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvG 237 (499)
....||+|++|||+.. ..+++||.+. .++.. ..........+ +....... .+......++|+|||
T Consensus 409 -------~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a--~~~l~~~~~~~---~~~~~~~~-~~~~~~~gk~VvVIG 475 (654)
T PRK12769 409 -------LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDA--LPFLIANTKQV---MGLEELPE-EPFINTAGLNVVVLG 475 (654)
T ss_pred -------HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEh--HHHHHHHHhhh---ccCccccc-cccccCCCCeEEEEC
Confidence 1246999999999864 4567888642 22211 11000000000 00000000 000012346999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC---
Q 010845 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--- 311 (499)
Q Consensus 238 gG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--- 311 (499)
||++|+|+|..+.+.+. .+|+++++. . .+|..+.. .+.+++.||+++.+ .+.++..
T Consensus 476 gG~~a~d~A~~a~r~ga-------------~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~ 537 (654)
T PRK12769 476 GGDTAMDCVRTALRHGA-------------SNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQ 537 (654)
T ss_pred CcHHHHHHHHHHHHcCC-------------CeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCC
Confidence 99999999998877662 479999875 3 35544332 34577889999988 7777742
Q ss_pred C---eEEE---------CCC-----------cEEeeeEEEEcCCCCcch--hcccCCCCCCCCCceeeCC----CCCCCC
Q 010845 312 Q---KLIL---------NDG-----------TEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDE----WLRVPS 362 (499)
Q Consensus 312 ~---~v~~---------~~g-----------~~i~~D~vi~a~G~~p~~--~~~~~~l~~~~~G~i~vd~----~l~~~~ 362 (499)
+ +|++ .+| .++++|+||+|+|+.|+. +++.++++++++|.|.||+ +++| +
T Consensus 538 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~T-s 616 (654)
T PRK12769 538 GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQT-S 616 (654)
T ss_pred CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCccc-C
Confidence 2 2333 112 269999999999999983 6777889999999999986 4788 9
Q ss_pred CCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 363 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 363 ~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|+|||+||++. | +.++..|+.+|+.||.+|..++.
T Consensus 617 ~~gVfAaGD~~~-----g----~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 617 NPKIFAGGDAVR-----G----ADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred CCCEEEcCCcCC-----C----CcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999985 2 67889999999999999998875
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=271.84 Aligned_cols=347 Identities=19% Similarity=0.195 Sum_probs=212.4
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010845 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+--++|+|.|+|+..|.++....+ +.+..+.++..++........ ... ......++|+|||||++|+++|..|+
T Consensus 89 ~p~~~grvC~~~Ce~~C~~~~~~~~-v~I~~l~r~~~~~~~~~~~~~---~~~-~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 89 FPEFTGRVCPAPCEGACTLGISEDP-VGIKSIERIIIDKGFQEGWVQ---PRP-PSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred chhHHhCcCChhhHHhccCCCCCCC-cchhHHHHHHHHHHHHcCCCC---CCC-CcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 4556899999999999999977644 777777777754322110000 010 11123479999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010845 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+.+....... +.......+ ..+ +......+. ..+++++.+.....+. ..+
T Consensus 164 ~~g~~V~v~e~~~~~gG~l~-~gip~~~~~-~~~---~~~~~~~~~-~~Gv~~~~~~~v~~~~-----~~~--------- 223 (485)
T TIGR01317 164 RAGHTVTVFEREDRCGGLLM-YGIPNMKLD-KAI---VDRRIDLLS-AEGIDFVTNTEIGVDI-----SAD--------- 223 (485)
T ss_pred HcCCeEEEEecCCCCCceee-ccCCCccCC-HHH---HHHHHHHHH-hCCCEEECCCEeCCcc-----CHH---------
Confidence 99999999999876432110 000000001 111 111111122 2567776654432211 111
Q ss_pred CCceeeeeCCeEEEcCCCC-ccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcCh
Q 010845 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~ 240 (499)
.....||.||+|||+. +..+++||.+. .++.. .+...........-....++ ......++|+|||||+
T Consensus 224 ---~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~---~~~l~~~~~~~~~~~~~~~~----~~~~~gk~VvViGgG~ 293 (485)
T TIGR01317 224 ---ELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYA---MEFLPSATKALLGKDFKDII----FIKAKGKKVVVIGGGD 293 (485)
T ss_pred ---HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeH---HHHHHHHhhhhccccccccc----cccCCCCEEEEECCcH
Confidence 1245799999999998 78889999642 22221 11111111100000000000 0012457999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC---------CCCHH--HHHHHHHHHHhCCCEEE-eC-ce
Q 010845 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------SFDDR--LRHYATTQLSKSGVRLV-RG-IV 306 (499)
Q Consensus 241 ~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~---------~~~~~--~~~~~~~~l~~~gV~v~-~~-~v 306 (499)
+|+|+|..+.+.+. .+|++++.. ..+. .++.. ......+..+..||+++ .+ .+
T Consensus 294 ~g~d~a~~a~~~ga-------------~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~ 360 (485)
T TIGR01317 294 TGADCVGTSLRHGA-------------ASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILT 360 (485)
T ss_pred HHHHHHHHHHHcCC-------------CEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCc
Confidence 99999888776652 579999865 2221 11111 22223344444576543 33 45
Q ss_pred EEEeC---C---eEEE--------CCC-----------cEEeeeEEEEcCCCC-cc-hhcccCCCCCCCCCceee-CCCC
Q 010845 307 KDVDS---Q---KLIL--------NDG-----------TEVPYGLLVWSTGVG-PS-TLVKSLDLPKSPGGRIGI-DEWL 358 (499)
Q Consensus 307 ~~v~~---~---~v~~--------~~g-----------~~i~~D~vi~a~G~~-p~-~~~~~~~l~~~~~G~i~v-d~~l 358 (499)
.++.. + ++.+ ++| .++++|+||+++|+. |+ .++..++++++++|++.+ |+++
T Consensus 361 ~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~ 440 (485)
T TIGR01317 361 KEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDY 440 (485)
T ss_pred EEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCc
Confidence 55532 1 1221 123 279999999999996 76 577778888888898854 5778
Q ss_pred CCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 359 ~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+| +.|+|||+|||+. | +.++..|+.+|+.||.+|..++.
T Consensus 441 ~T-s~~gVfAaGD~~~-----g----~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 441 ST-SIPGVFAAGDCRR-----G----QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred eE-CCCCEEEeeccCC-----C----cHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 9999999999984 2 56788999999999999999986
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=238.98 Aligned_cols=290 Identities=23% Similarity=0.328 Sum_probs=207.3
Q ss_pred CCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcC---CCCcccccchhhhhc--------------------------c
Q 010845 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP---RNHMVFTPLLASTCV--------------------------G 109 (499)
Q Consensus 59 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~---~~~~~~~~~~~~~~~--------------------------g 109 (499)
.+-.++.+|||||.+||+||++++..|.+|.++|- .+. .-.+.+.+.+. |
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~-GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQ-GTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCC-CCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 34568999999999999999999999999999982 221 11111111111 1
Q ss_pred CCCCC-ccccchhhhccc-------ccc-------CCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeE
Q 010845 110 TLEFR-SVAEPIARIQPA-------ISR-------EPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174 (499)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~-------~~~-------~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~L 174 (499)
.--.+ .+..+++.+.+. +.- ...+.++++..+.+|+ ..+...+ ..++++.++++++
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~--h~I~at~-------~~gk~~~~ta~~f 165 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDP--HKIKATN-------KKGKERFLTAENF 165 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeeccc--ceEEEec-------CCCceEEeecceE
Confidence 10011 122222222111 110 0122222222223322 2333222 1234568999999
Q ss_pred EEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHH
Q 010845 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (499)
Q Consensus 175 ViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~ 254 (499)
|||||.+|++|+|||..++.++..++ |.++..|+ +-+|||+|++++|+|+.|+.++
T Consensus 166 vIatG~RPrYp~IpG~~Ey~ITSDDl-------------Fsl~~~PG----------kTLvVGa~YVaLECAgFL~gfg- 221 (503)
T KOG4716|consen 166 VIATGLRPRYPDIPGAKEYGITSDDL-------------FSLPYEPG----------KTLVVGAGYVALECAGFLKGFG- 221 (503)
T ss_pred EEEecCCCCCCCCCCceeeeeccccc-------------ccccCCCC----------ceEEEccceeeeehhhhHhhcC-
Confidence 99999999999999988888877654 77788887 8999999999999999999988
Q ss_pred HHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC----ceEEEeCCeEEE--C---C--CcEEe
Q 010845 255 RDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG----IVKDVDSQKLIL--N---D--GTEVP 323 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~----~v~~v~~~~v~~--~---~--g~~i~ 323 (499)
.+||+..|+-+|..|+.++.+.+.+.++++||++... +|+.+++..+.+ + . +-+-+
T Consensus 222 -------------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ 288 (503)
T KOG4716|consen 222 -------------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEE 288 (503)
T ss_pred -------------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccch
Confidence 8999999998899999999999999999999999876 466666664322 1 1 22457
Q ss_pred eeEEEEcCCCCcch---hcccCCCCCC-CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHH
Q 010845 324 YGLLVWSTGVGPST---LVKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 399 (499)
Q Consensus 324 ~D~vi~a~G~~p~~---~~~~~~l~~~-~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa 399 (499)
+|+|+||+|..+.. -+...|+..+ ..|.|.||+.-++ +.|+|||+||+.. +. |.+...|++.|+.+|
T Consensus 289 ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~-----~k---pELTPvAIqsGrlLa 359 (503)
T KOG4716|consen 289 YDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILE-----DK---PELTPVAIQSGRLLA 359 (503)
T ss_pred hhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecceec-----CC---cccchhhhhhchHHH
Confidence 99999999999973 2344566664 4578999999998 9999999999995 43 888999999999999
Q ss_pred HHHHH
Q 010845 400 SLLNR 404 (499)
Q Consensus 400 ~~i~~ 404 (499)
+.|-.
T Consensus 360 ~Rlf~ 364 (503)
T KOG4716|consen 360 RRLFA 364 (503)
T ss_pred HHHhc
Confidence 98743
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=273.41 Aligned_cols=342 Identities=16% Similarity=0.130 Sum_probs=220.3
Q ss_pred ccccccccccc--cccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHH
Q 010845 2 SLFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMK 79 (499)
Q Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~ 79 (499)
-|+--++|+|. ++|+..|.+...+. ...+..+.+|..++.......+.. ++ .....++|+|||||+|||++|.
T Consensus 253 p~p~~~grvCp~~~~Ce~~C~~~~~~~-~v~i~~l~r~~~d~~~~~~~~~~~---~~-~~~~~kkVaIIG~GpaGl~aA~ 327 (639)
T PRK12809 253 SLPEICGRVCPQDRLCEGACTLKDHSG-AVSIGNLERYITDTALAMGWRPDV---SK-VVPRSEKVAVIGAGPAGLGCAD 327 (639)
T ss_pred CcchhhcccCCCCCChHHhccCCCcCC-CcChhHHHHHHHHHHHHhCCCCCC---Cc-ccCCCCEEEEECcCHHHHHHHH
Confidence 35667899997 68999999997765 588888888877654211111111 11 1124689999999999999999
Q ss_pred hccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccc-hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCc
Q 010845 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP-IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (499)
Q Consensus 80 ~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~ 158 (499)
.|++.|++|+|+|+.+...... . .|..... +... +..... .....++++..+.... +.+.+..
T Consensus 328 ~L~~~G~~Vtv~e~~~~~GG~l-~----~gip~~~-l~~~~~~~~~~-~~~~~Gv~~~~~~~v~-----~~~~~~~---- 391 (639)
T PRK12809 328 ILARAGVQVDVFDRHPEIGGML-T----FGIPPFK-LDKTVLSQRRE-IFTAMGIDFHLNCEIG-----RDITFSD---- 391 (639)
T ss_pred HHHHcCCcEEEEeCCCCCCCee-e----ccCCccc-CCHHHHHHHHH-HHHHCCeEEEcCCccC-----CcCCHHH----
Confidence 9999999999999988643221 0 1111111 1111 111111 1223567765543221 1122211
Q ss_pred cccCCCceeeeeCCeEEEcCCCCc-cCCCCCCccc-cCccCCCHHHHHHHHHHHHHH-HhhcCCCCCCHHHHhccccEEE
Q 010845 159 LRTLEPWKFKISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLN-LMLSDVPGISEEEKSRLLHCVV 235 (499)
Q Consensus 159 ~~~~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~vvV 235 (499)
....||+|++|||+.. ..+++||.+. .++. +..+....... +....... .+......++|+|
T Consensus 392 --------l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~------a~~~l~~~~~~~~~~~~~~~-~~~~~~~gk~vvV 456 (639)
T PRK12809 392 --------LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQ------ALPFLTAHTRQLMGLPESEE-YPLTDVEGKRVVV 456 (639)
T ss_pred --------HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEe------HHHHHHHHHHhhccCccccc-cccccCCCCeEEE
Confidence 1346999999999874 4567888642 2221 11111111000 00000000 0001124579999
Q ss_pred eCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC-
Q 010845 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS- 311 (499)
Q Consensus 236 vGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~- 311 (499)
||+|.+++|+|..+.+.+. .+||++++. + .+|..+.++. .+++.||+++.+ .+.++..
T Consensus 457 iGgG~~a~d~a~~~~~~Ga-------------~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~~~~i~~~ 518 (639)
T PRK12809 457 LGGGDTTMDCLRTSIRLNA-------------ASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQPQYIACD 518 (639)
T ss_pred ECCcHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccCCEEEEEC
Confidence 9999999999988777652 479999975 3 3555433332 356789999988 7777752
Q ss_pred --Ce---EEE---C------CC-----------cEEeeeEEEEcCCCCcc--hhcccCCCCCCCCCceeeCC----CCCC
Q 010845 312 --QK---LIL---N------DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDE----WLRV 360 (499)
Q Consensus 312 --~~---v~~---~------~g-----------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd~----~l~~ 360 (499)
+. +.+ + +| .++++|.||+|+|+.|+ .+++.++++++++|+|.||+ ++||
T Consensus 519 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~T 598 (639)
T PRK12809 519 EDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQT 598 (639)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCccc
Confidence 22 222 1 12 36899999999999997 36677788888899999986 4788
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.|+|||+|||+. | +.++..|+.+|+.||++|..++.
T Consensus 599 -s~~gVfA~GD~~~-----g----~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 599 -HLKKVFAGGDAVH-----G----ADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred -CCCCEEEcCCCCC-----C----chHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999985 2 66789999999999999999886
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=236.73 Aligned_cols=287 Identities=22% Similarity=0.293 Sum_probs=211.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----------ch----------hh-hhccCCCCCccccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----------LL----------AS-TCVGTLEFRSVAEP 119 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----------~~----------~~-~~~g~~~~~~~~~~ 119 (499)
..+||+|||+||+|..||.+.++.|++.++||++..+..+- ++ .+ .....++...+..+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 46899999999999999999999999999999976543321 11 10 00001111111111
Q ss_pred --------------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 120 --------------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 120 --------------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+..-...+.+..++.++.+.-.-+++. .|.+...+ ++...+...++||||||.- +
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~--~V~v~k~d-------g~~~ii~aKnIiiATGSeV--~ 186 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN--KVSVKKID-------GEDQIIKAKNIIIATGSEV--T 186 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc--eEEEeccC-------CCceEEeeeeEEEEeCCcc--C
Confidence 211122334457788888887777765 45544422 2246899999999999963 2
Q ss_pred CCCCcc--ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCC
Q 010845 186 GIHGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (499)
Q Consensus 186 ~ipG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~ 263 (499)
++||+. +..+...+ .+ +.+.+.|. +++|||+|.+|+|+..-..+++
T Consensus 187 ~~PGI~IDekkIVSSt--gA----------LsL~~vPk----------~~~viG~G~IGLE~gsV~~rLG---------- 234 (506)
T KOG1335|consen 187 PFPGITIDEKKIVSST--GA----------LSLKEVPK----------KLTVIGAGYIGLEMGSVWSRLG---------- 234 (506)
T ss_pred CCCCeEecCceEEecC--Cc----------cchhhCcc----------eEEEEcCceeeeehhhHHHhcC----------
Confidence 345652 32222111 11 34445564 9999999999999999999988
Q ss_pred CCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---e--EEECC---C--cEEeeeEEEEcC
Q 010845 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---K--LILND---G--TEVPYGLLVWST 331 (499)
Q Consensus 264 ~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---~--v~~~~---g--~~i~~D~vi~a~ 331 (499)
.+||+|+.. ++.+.++.++++.+++.|.++|++++++ +|...+.+ . |.+.+ + ++++||.+++++
T Consensus 235 ----seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsi 310 (506)
T KOG1335|consen 235 ----SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSI 310 (506)
T ss_pred ----CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEc
Confidence 899999985 7889999999999999999999999999 88887653 2 33332 2 579999999999
Q ss_pred CCCcch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 332 GVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 332 G~~p~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|.+|-+ -+++.|++.|++|+|.||..++| .+||||++||+.. | |++++.|..||..+.+.|..
T Consensus 311 GRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~-----g----pMLAhkAeeegI~~VE~i~g 376 (506)
T KOG1335|consen 311 GRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTL-----G----PMLAHKAEEEGIAAVEGIAG 376 (506)
T ss_pred cCcccccCCChhhcccccccccceeccccccc-cCCceEEecccCC-----c----chhhhhhhhhchhheeeecc
Confidence 999963 35667888899999999999999 9999999999995 2 99999999999998887653
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=260.44 Aligned_cols=331 Identities=18% Similarity=0.167 Sum_probs=209.4
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010845 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+..++|+|.|+|+..|.|...+.+ ..+..+.++..+...... . ..+.......++|+|||||++||++|..|+
T Consensus 84 ~~~~~grvc~~~ce~~C~r~~~~~~-v~i~~l~r~~~~~~~~~~---~--~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~ 157 (564)
T PRK12771 84 FPAVMGRVCYHPCESGCNRGQVDDA-VGINAVERFLGDYAIANG---W--KFPAPAPDTGKRVAVIGGGPAGLSAAYHLR 157 (564)
T ss_pred cchHhhCcCCchhHHhccCCCCCCC-cCHHHHHHHHHHHHHHcC---C--CCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 5667899999999999999976654 555556666433221100 0 011111234578999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010845 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|+|+.+.+..... .......+..+.....+.. + ...++.+..+...+.+. ..+.
T Consensus 158 ~~G~~V~v~e~~~~~GG~l~-~gip~~~~~~~~~~~~l~~----~-~~~Gv~~~~~~~~~~~~-----~~~~-------- 218 (564)
T PRK12771 158 RMGHAVTIFEAGPKLGGMMR-YGIPAYRLPREVLDAEIQR----I-LDLGVEVRLGVRVGEDI-----TLEQ-------- 218 (564)
T ss_pred HCCCeEEEEecCCCCCCeee-ecCCCccCCHHHHHHHHHH----H-HHCCCEEEeCCEECCcC-----CHHH--------
Confidence 99999999999876543211 1111011111111111111 1 12455544332111111 0000
Q ss_pred CCceeeeeCCeEEEcCCCCc-cCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChH
Q 010845 163 EPWKFKISYDKLVIALGAEA-STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~ 241 (499)
....||++|+|||+.. ....++|.+.. ....+..+...... .. .....++|+|||+|.+
T Consensus 219 ----~~~~~D~Vi~AtG~~~~~~~~i~g~~~~-----gv~~~~~~l~~~~~-~~----------~~~~gk~v~ViGgg~~ 278 (564)
T PRK12771 219 ----LEGEFDAVFVAIGAQLGKRLPIPGEDAA-----GVLDAVDFLRAVGE-GE----------PPFLGKRVVVIGGGNT 278 (564)
T ss_pred ----HHhhCCEEEEeeCCCCCCcCCCCCCccC-----CcEEHHHHHHHhhc-cC----------CcCCCCCEEEECChHH
Confidence 1235999999999874 44577775321 11111111111100 00 0123469999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCe-----
Q 010845 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK----- 313 (499)
Q Consensus 242 gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~----- 313 (499)
|+|++..+.+++. .+|+++++.. .++.....+ +...+.||+++.+ .+.++..+.
T Consensus 279 a~d~a~~a~~lga-------------~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~ 340 (564)
T PRK12771 279 AMDAARTARRLGA-------------EEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENGATG 340 (564)
T ss_pred HHHHHHHHHHcCC-------------CEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEE
Confidence 9999987776652 5788888752 344443333 2345679999988 788876431
Q ss_pred E---EE------CCC---------cEEeeeEEEEcCCCCcc-hhccc-CCCCCCCCCceeeCC-CCCCCCCCCeEEeccc
Q 010845 314 L---IL------NDG---------TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDE-WLRVPSVQDVFAVGDC 372 (499)
Q Consensus 314 v---~~------~~g---------~~i~~D~vi~a~G~~p~-~~~~~-~~l~~~~~G~i~vd~-~l~~~~~~~Ifa~GD~ 372 (499)
+ .+ .+| .++++|+||+|+|+.|+ .++.+ .++. +++|+|.||+ +++| +.|+|||+|||
T Consensus 341 v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~ 418 (564)
T PRK12771 341 LRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMT-GRPGVFAGGDM 418 (564)
T ss_pred EEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccC-CCCCEEeccCc
Confidence 1 11 112 37999999999999998 46664 4676 7789999998 5666 99999999999
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 373 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 373 a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+. | +.++..|++||+.+|.+|.+.+.
T Consensus 419 ~~-----g----~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 419 VP-----G----PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CC-----C----chHHHHHHHHHHHHHHHHHHHHc
Confidence 84 2 67899999999999999999986
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=235.00 Aligned_cols=291 Identities=25% Similarity=0.284 Sum_probs=223.8
Q ss_pred EEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccc--cchhhhhccCCCCCccccchhhhccccccCCCeEE-EEEE
Q 010845 65 VVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF-FLSH 139 (499)
Q Consensus 65 VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 139 (499)
++|||+|++|+++|..|++. +.+++++..++...|. +....+..+............ . . ...++.. ...+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-F---N-RATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-h---H-HhhCCEEeeCCE
Confidence 58999999999999988774 4678877776554443 444444444333333322222 1 1 1234444 4468
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (499)
|+.+|++.+.+.+.+ .++.||+||+|||+.+..++ .......+.++..+++..++.....
T Consensus 76 v~~id~~~~~v~~~~------------g~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------- 135 (415)
T COG0446 76 VTSIDPENKVVLLDD------------GEIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEP------- 135 (415)
T ss_pred EEEecCCCCEEEECC------------CcccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhc-------
Confidence 999999999998876 27899999999999998876 2223557788889888888776421
Q ss_pred CCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCC-HHHHHHHHHHHHhC
Q 010845 220 PGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKS 297 (499)
Q Consensus 220 p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~-~~~~~~~~~~l~~~ 297 (499)
.++++|||+|+.|+|+|..+...+ .+|++++.. ++++.+. +.+.+.+.+.++++
T Consensus 136 ----------~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (415)
T COG0446 136 ----------PKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191 (415)
T ss_pred ----------cCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHC
Confidence 359999999999999999999988 899999987 6777776 89999999999999
Q ss_pred CCEEEeC-ceEEEeCCe-------EEECCCcEEeeeEEEEcCCCCcchhcccCCC--CCCCCCceeeCCCCCCCCCCCeE
Q 010845 298 GVRLVRG-IVKDVDSQK-------LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL--PKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~-------v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l--~~~~~G~i~vd~~l~~~~~~~If 367 (499)
||+++.+ .+.+++.+. +...++.++++|++++++|.+|+..+.+... ....+|+|.||+.+++..+++||
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~ 271 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVY 271 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEE
Confidence 9999998 889998752 5777889999999999999999854444332 45667899999999983399999
Q ss_pred EeccccccccCC-CCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 368 AVGDCSGYLEST-GKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 368 a~GD~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|+|||+..+... +.....+.++.|..+++.++.++..
T Consensus 272 a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 272 AAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred eccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 999999887644 2334577889999999999998764
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=242.25 Aligned_cols=289 Identities=17% Similarity=0.146 Sum_probs=188.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||||||+||..|++.|++|+|||+++....+..... ...........+......+....++.++. ++|
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---ETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---cccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 57899999999999999999999999999999876543322111 11111111111122323344434566654 578
Q ss_pred EEEECCCCEEEEeeecCcc-----ccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHH
Q 010845 141 AGIDTDNHVVHCETVTDEL-----RTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~-----~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+++.......++...... ....+....+.||+||||||+.++.+++||.+ +.++..... ..+...
T Consensus 240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~---~~~l~~----- 311 (985)
T TIGR01372 240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAA---RTYLNR----- 311 (985)
T ss_pred EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHH---HHHHHh-----
Confidence 8886543322222111000 00001123689999999999999999999974 233332221 111110
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHH
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l 294 (499)
.. ....++|+|||+|++|+|+|..|...+. ..|++++..+. +...+.+.|
T Consensus 312 --~~--------~~~gk~VvViG~G~~g~e~A~~L~~~G~-------------~vV~vv~~~~~-------~~~~l~~~L 361 (985)
T TIGR01372 312 --YG--------VAPGKRIVVATNNDSAYRAAADLLAAGI-------------AVVAIIDARAD-------VSPEARAEA 361 (985)
T ss_pred --hC--------cCCCCeEEEECCCHHHHHHHHHHHHcCC-------------ceEEEEccCcc-------hhHHHHHHH
Confidence 00 0123699999999999999999998761 35788876531 233456778
Q ss_pred HhCCCEEEeC-ceEEEeCC----eEEEC----CCcEEeeeEEEEcCCCCcc-hhcccCCCCCC--CC--CceeeCCCCCC
Q 010845 295 SKSGVRLVRG-IVKDVDSQ----KLILN----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS--PG--GRIGIDEWLRV 360 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~----~v~~~----~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~--~~--G~i~vd~~l~~ 360 (499)
++.||+++++ .+.++.++ +|++. ++++++||.|+++.|..|+ .++..++..+. +. +++. .|
T Consensus 362 ~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~-----~t 436 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP-----GD 436 (985)
T ss_pred HHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec-----CC
Confidence 9999999999 78888764 35554 4568999999999999999 46666664432 11 1211 13
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.|+||++|||+. ...+..|+.+|+.||..|+..+.
T Consensus 437 -~v~gVyaaGD~~g----------~~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 437 -AVQGCILAGAANG----------LFGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred -CCCCeEEeeccCC----------ccCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999995 44577899999999999887663
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=226.93 Aligned_cols=277 Identities=16% Similarity=0.157 Sum_probs=175.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh-----------------------hhh-------cc-
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA-----------------------STC-------VG- 109 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~-----------------------~~~-------~g- 109 (499)
..++|+|||||+|||+||++|++.|++|+|+|+++..+...... ... .+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 35789999999999999999999999999999987543322110 000 00
Q ss_pred --CCCCCc------------cccchhhhccccccCCCeE---EEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCC
Q 010845 110 --TLEFRS------------VAEPIARIQPAISREPGSY---FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172 (499)
Q Consensus 110 --~~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd 172 (499)
.+.... ....+.+++..+....++. ...++|+.|++.++.+.+.....+ +...+..||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~-----~~~~~~~~d 163 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG-----GFSKDEIFD 163 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC-----CceEEEEcC
Confidence 000000 0011222222233333332 345799999987776666543211 112356899
Q ss_pred eEEEcCC--CCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHH
Q 010845 173 KLVIALG--AEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (499)
Q Consensus 173 ~LViAtG--~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~ 247 (499)
+||+||| +.|+.|.+||+++. .++.+++.+.. ..+.|+|+|||+|.+|+|+|.
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~----------------------~~~gk~VvVVG~G~Sg~diA~ 221 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPD----------------------PFKNEVVVVIGNFASGADISR 221 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccCCceEEEecccCCcc----------------------ccCCCEEEEECCCcCHHHHHH
Confidence 9999999 67899999998532 12222221111 134579999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe-CCeEEECCCcEEeee
Q 010845 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD-SQKLILNDGTEVPYG 325 (499)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~-~~~v~~~~g~~i~~D 325 (499)
+|...+ .+|+++++....... +.+.....++..+ .|..+. ++.|+++||+++++|
T Consensus 222 ~L~~~a--------------~~V~l~~r~~~~~~~---------~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D 278 (461)
T PLN02172 222 DIAKVA--------------KEVHIASRASESDTY---------EKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYAD 278 (461)
T ss_pred HHHHhC--------------CeEEEEEeecccccc---------ccCcCCCCceEECCcccceecCCeEEECCCCCccCC
Confidence 999877 899999986311100 1111123344444 566554 356999999999999
Q ss_pred EEEEcCCCCcc-hhcccCCCCCCCCCceeeCCC--------CCCCC-CCCeEEeccccccccCCCCCCCCchHHHHHHHH
Q 010845 326 LLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW--------LRVPS-VQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 395 (499)
Q Consensus 326 ~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~--------l~~~~-~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g 395 (499)
.||+|||++++ +++... |.+.+|+. .-.+. .|+++.+|=+.. ......+..||
T Consensus 279 ~Ii~~TGy~~~~pfL~~~-------~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~----------~~~f~~~E~Qa 341 (461)
T PLN02172 279 TIVHCTGYKYHFPFLETN-------GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAM----------GIQFVMFEIQS 341 (461)
T ss_pred EEEECCcCCccccccCcc-------cceeeCCCcchhhHHhhcCCCCCCcEEEEecccc----------ccCchhHHHHH
Confidence 99999999998 665543 33444433 11233 389999996542 23356788899
Q ss_pred HHHHHHHHH
Q 010845 396 KYLFSLLNR 404 (499)
Q Consensus 396 ~~aa~~i~~ 404 (499)
+++|+.+..
T Consensus 342 ~~~a~v~sG 350 (461)
T PLN02172 342 KWVAAVLSG 350 (461)
T ss_pred HHHHHHHcC
Confidence 999887643
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=223.75 Aligned_cols=306 Identities=16% Similarity=0.127 Sum_probs=178.0
Q ss_pred CCCcEEEECCchHHHHHHHhccC--CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
..++|+|||||||||+||..|++ .|++|+|||+.+..... +.+.+.........+...+..+ ....++.|+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl-vr~gvaP~~~~~k~v~~~~~~~----~~~~~v~~~~n 99 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL-VRSGVAPDHPETKNVTNQFSRV----ATDDRVSFFGN 99 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce-EeeccCCCcchhHHHHHHHHHH----HHHCCeEEEcC
Confidence 35789999999999999999986 79999999999864321 1122211111122222222222 22256776553
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc-cCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
...+ +.++++. ....||+||||||+.+ +.++|||.+ ++++. +..+...+...-..
T Consensus 100 v~vg-----~dvtl~~------------L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~------a~~fl~~~ng~~d~ 156 (491)
T PLN02852 100 VTLG-----RDVSLSE------------LRDLYHVVVLAYGAESDRRLGIPGEDLPGVLS------AREFVWWYNGHPDC 156 (491)
T ss_pred EEEC-----ccccHHH------------HhhhCCEEEEecCCCCCCCCCCCCCCCCCeEE------HHHHHHHhhcchhh
Confidence 2221 2333332 1347999999999985 678899964 23332 22222111100000
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHH-----hcCCCC--CceEEEEEeCCCc--CCCCCHHHH
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ-----RYSHVK--DYIHVTLIEANEI--LSSFDDRLR 287 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~-----~~~~~~--~~~~Vtlv~~~~~--l~~~~~~~~ 287 (499)
.... ......++|+|||+|++|+|+|..|.+....-... .+..++ .-.+|+++.|... .+....++.
T Consensus 157 ~~~~----~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elr 232 (491)
T PLN02852 157 VHLP----PDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELR 232 (491)
T ss_pred hhhh----hcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHH
Confidence 0000 00123469999999999999999987642100000 000011 1257999987631 111111111
Q ss_pred H-------------------------------------HHHHHHHh---------CCCEEEeC-ceEEEeC-----C---
Q 010845 288 H-------------------------------------YATTQLSK---------SGVRLVRG-IVKDVDS-----Q--- 312 (499)
Q Consensus 288 ~-------------------------------------~~~~~l~~---------~gV~v~~~-~v~~v~~-----~--- 312 (499)
+ .+.+...+ ++|.++.. ...+|.. +
T Consensus 233 el~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~ 312 (491)
T PLN02852 233 ELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVA 312 (491)
T ss_pred HHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEE
Confidence 1 11112112 46777765 4555531 1
Q ss_pred eEEEC-----------------CC--cEEeeeEEEEcCCCCc--ch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEE
Q 010845 313 KLILN-----------------DG--TEVPYGLLVWSTGVGP--ST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 313 ~v~~~-----------------~g--~~i~~D~vi~a~G~~p--~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
++++. +| ++++||.||.++|+++ .+ +....++..+.+|+|.+|+.++| +.|+|||
T Consensus 313 ~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyA 391 (491)
T PLN02852 313 GVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYV 391 (491)
T ss_pred EEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEE
Confidence 23221 22 2589999999999984 32 22233455677899999988887 8999999
Q ss_pred eccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 369 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 369 ~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|||.. |. ......++.+|+.+|.+|...+.
T Consensus 392 aGDi~~-----Gp---~gvI~t~~~dA~~ta~~i~~d~~ 422 (491)
T PLN02852 392 VGWLKR-----GP---TGIIGTNLTCAEETVASIAEDLE 422 (491)
T ss_pred eeeEec-----CC---CCeeeecHhhHHHHHHHHHHHHH
Confidence 999996 32 33567789999999999998876
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-25 Score=206.46 Aligned_cols=304 Identities=18% Similarity=0.261 Sum_probs=222.2
Q ss_pred CCCcEEEECCchHHHHHHHhccC--CCCeEEEEcCCCCcccc--cchhhhh-ccCC--------------------CCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT--PLLASTC-VGTL--------------------EFRS 115 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--~g~~V~lie~~~~~~~~--~~~~~~~-~g~~--------------------~~~~ 115 (499)
++...+|||||.+..+++...+. .+.+|.+|..++..+|. |+..+.+ .+.. .++.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 34568999999999988877765 46789999988887775 3332221 1110 1111
Q ss_pred cccchhhhccccccCCCeEEEEE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC-CC----
Q 010845 116 VAEPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HG---- 189 (499)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i-pG---- 189 (499)
....-.++- .....++.++++ .|+.||.+.+.|.+.+ | .+|.||.++||||.+|....+ .-
T Consensus 257 FfvspeDLp--~~~nGGvAvl~G~kvvkid~~d~~V~LnD---G--------~~I~YdkcLIATG~~Pk~l~~~~~A~~e 323 (659)
T KOG1346|consen 257 FFVSPEDLP--KAVNGGVAVLRGRKVVKIDEEDKKVILND---G--------TTIGYDKCLIATGVRPKKLQVFEEASEE 323 (659)
T ss_pred ceeChhHCc--ccccCceEEEeccceEEeecccCeEEecC---C--------cEeehhheeeecCcCcccchhhhhcCHH
Confidence 111112221 112246666776 8999999999999887 3 589999999999999976432 21
Q ss_pred ccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE
Q 010845 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (499)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~ 269 (499)
..+.+..++...|..++.+-+.+ .++|.|||+|..|.|+|+.|.+.... .+.+
T Consensus 324 vk~kit~fr~p~DF~rlek~~ae-----------------k~siTIiGnGflgSELacsl~rk~r~----------~g~e 376 (659)
T KOG1346|consen 324 VKQKITYFRYPADFKRLEKGLAE-----------------KQSITIIGNGFLGSELACSLKRKYRN----------EGVE 376 (659)
T ss_pred hhhheeEEecchHHHHHHHhhhh-----------------cceEEEEcCcchhhhHHHHHHHhhhc----------cCcE
Confidence 12455567777788777665421 25899999999999999999876421 2367
Q ss_pred EEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc-hhccc
Q 010845 270 VTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKS 341 (499)
Q Consensus 270 Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~ 341 (499)
|+-+-.. +.-.-+++.++++..+.+++.||.++.+ .|.++... .+.++||.++..|+||+|+|-.|| ++++.
T Consensus 377 V~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 377 VHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred EEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 7765443 3323456789999999999999999999 77776543 467899999999999999999999 68888
Q ss_pred CCCCCCCC-CceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 342 LDLPKSPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 342 ~~l~~~~~-G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
.+|++|++ |.+.||..|+. ..|||++||++.+.+..=+........+|.-.|+.++.|+....
T Consensus 457 sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAa 520 (659)
T KOG1346|consen 457 SGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAA 520 (659)
T ss_pred ccceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceeccccccccc
Confidence 89999876 78999999997 68999999999987753333445667788889999999986544
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=198.60 Aligned_cols=329 Identities=19% Similarity=0.247 Sum_probs=227.9
Q ss_pred CCCCCCcEEEECCchHHHHHHHhccCC-C-CeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEE
Q 010845 58 KANEKPRVVVLGSGWAGCRLMKGIDTS-L-YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (499)
Q Consensus 58 ~~~~~~~VvIIGgG~aGl~aA~~L~~~-g-~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (499)
...++.+|+|||||.+|+.+|..+.+. + -+|.|||+...+.|+|.+.-+..|....+.......++.+ .+..+
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP-----~~a~w 109 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIP-----KGATW 109 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCccccccc-----CCcHH
Confidence 335678999999999999998888653 3 3699999999999999988887787776666666666543 45677
Q ss_pred EEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc-----cCccCCCHHHHHHHHHHH
Q 010845 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-----NATFLREVHHAQEIRRKL 210 (499)
Q Consensus 136 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~-----~~~~~~~~~~~~~~~~~~ 210 (499)
++.+|...+++++.|.++. +.+|.|||||||+|...++-.|+|+.| .+....+..........+
T Consensus 110 i~ekv~~f~P~~N~v~t~g-----------g~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~ 178 (446)
T KOG3851|consen 110 IKEKVKEFNPDKNTVVTRG-----------GEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKEL 178 (446)
T ss_pred HHHHHHhcCCCcCeEEccC-----------CcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHH
Confidence 8899999999999998876 258999999999999988888988743 344444555555444443
Q ss_pred HHHHh----hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHH
Q 010845 211 LLNLM----LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR 285 (499)
Q Consensus 211 ~~~~~----~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~ 285 (499)
.+ +. ....|. .-+-..|+-.-.+-++... .+ ....|+..++.....- .++. -..
T Consensus 179 ~~-fk~GNAIfTfPn---------tpiKCAGAPQKi~yise~y--------~R-k~gvRd~a~iiy~Tsl~~iFg--Vk~ 237 (446)
T KOG3851|consen 179 MN-FKKGNAIFTFPN---------TPIKCAGAPQKIMYISESY--------FR-KRGVRDNANIIYNTSLPTIFG--VKH 237 (446)
T ss_pred Hh-ccCCceEEecCC---------CccccCCCchhhhhhhHHH--------HH-HhCccccccEEEecCccceec--HHH
Confidence 21 21 112222 0111122221111111111 11 1234455666555543 3322 146
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEECC----C--cEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCC
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILND----G--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE 356 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~~~~----g--~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~ 356 (499)
..+.+++..++++|++-.. .+.+|..+ ..++++ | ++++++++-+....++++.++++.+ .|+.|++.||+
T Consensus 238 Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~-adktGfvdVD~ 316 (446)
T KOG3851|consen 238 YADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDL-ADKTGFVDVDQ 316 (446)
T ss_pred HHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcc-cCcccceecCh
Confidence 6778888889999999877 66666543 233322 3 4799999999999999988888886 57889999995
Q ss_pred -CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccceE-E
Q 010845 357 -WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSM-A 434 (499)
Q Consensus 357 -~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~ 434 (499)
++|+..+||||++|||+.. |..+++..+..|..++-+|+....+ |.. +-..|....+| +
T Consensus 317 ~TlQs~kypNVFgiGDc~n~-------PnsKTaAAvaaq~~vv~~nl~~~m~---g~~---------pt~~ydGYtSCPl 377 (446)
T KOG3851|consen 317 STLQSKKYPNVFGIGDCMNL-------PNSKTAAAVAAQSPVVDKNLTQVMQ---GKR---------PTMKYDGYTSCPL 377 (446)
T ss_pred hhhccccCCCceeeccccCC-------CchhhHHHHHhcCchhhhhHHHHhc---CCC---------cceeecCcccCce
Confidence 5999999999999999974 4588888888999999999998876 321 34456666666 4
Q ss_pred EecCCceeE
Q 010845 435 TIGRYKALV 443 (499)
Q Consensus 435 ~lG~~~av~ 443 (499)
..|-+.-++
T Consensus 378 vtgy~k~iL 386 (446)
T KOG3851|consen 378 VTGYNKVIL 386 (446)
T ss_pred eeccceEEE
Confidence 555555443
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-24 Score=224.94 Aligned_cols=342 Identities=12% Similarity=0.123 Sum_probs=191.8
Q ss_pred cccccc-cccccccccCCCCCCCCCccceecccCCCccCCCC-----------CC--ccccccCCCCCCCCCCCCcEEEE
Q 010845 3 LFKHLL-RNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASP-----------ST--VQLTQYSGLGPTKANEKPRVVVL 68 (499)
Q Consensus 3 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~VvII 68 (499)
++--++ |||. .|+.+|.+. .+.| ..|+.+++|..+... .. +...... +.......++|+||
T Consensus 315 ~p~~~G~RVCp-~CE~aC~r~-~deP-V~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~--~~~~~~tgKKVaVV 389 (1028)
T PRK06567 315 MVAATGHRICN-DCSKACIYQ-KQDP-VNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYA--PLPKEPTNYNILVT 389 (1028)
T ss_pred ChHhhCCccCc-chHHHhcCC-CCCC-eehhHHHHHHhhhhhhhcccccccccccccccccccC--CCCCCCCCCeEEEE
Confidence 344577 9999 699999998 5544 888888887654210 00 0000111 11222456899999
Q ss_pred CCchHHHHHHHhccCCCCeEEEEcCCCC--------------cccccchhhhh---ccCCCCCcccc--c---hhhhccc
Q 010845 69 GSGWAGCRLMKGIDTSLYDVVCVSPRNH--------------MVFTPLLASTC---VGTLEFRSVAE--P---IARIQPA 126 (499)
Q Consensus 69 GgG~aGl~aA~~L~~~g~~V~lie~~~~--------------~~~~~~~~~~~---~g~~~~~~~~~--~---~~~~~~~ 126 (499)
|||||||+||++|++.|++|||+|+.+. ..|.+++.+.. .|.+....+.. + +..+...
T Consensus 390 GaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~~l~~i~~i 469 (1028)
T PRK06567 390 GLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKNNLDILRLI 469 (1028)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHHHHHHHHHH
Confidence 9999999999999999999999998531 23455554444 23222222221 0 1111111
Q ss_pred cccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC-CccCCCCCCccccCccCCCHHHHHH
Q 010845 127 ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVKENATFLREVHHAQE 205 (499)
Q Consensus 127 ~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~~~~~~~~~~~~~~~ 205 (499)
+....++.++.+...+.| ++.+. -....||+|+||||+ .|+.++|||.+. ..+.+..+...
T Consensus 470 l~~g~~v~~~~gv~lG~d-----it~ed-----------l~~~gyDAV~IATGA~kpr~L~IPGeda--~GV~sA~DfL~ 531 (1028)
T PRK06567 470 LERNNNFKYYDGVALDFN-----ITKEQ-----------AFDLGFDHIAFCIGAGQPKVLDIENFEA--KGVKTASDFLM 531 (1028)
T ss_pred HhcCCceEEECCeEECcc-----CCHHH-----------HhhcCCCEEEEeCCCCCCCCCCCCCccC--CCeEEHHHHHH
Confidence 222334555544443322 22221 024579999999999 699999999752 22333333322
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHH--------HHHHHHHhcCCC-------------
Q 010845 206 IRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF--------IMRDVRQRYSHV------------- 264 (499)
Q Consensus 206 ~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~--------~~~~~~~~~~~~------------- 264 (499)
..+.. ..+.....+ .....++|+|||||++|+|+|.+...+ ......+.||..
T Consensus 532 ~l~~~-~~~~~~~~~-----~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r 605 (1028)
T PRK06567 532 TLQSG-GAFLKNSNT-----NMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAK 605 (1028)
T ss_pred HHhhc-ccccccccC-----cccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHH
Confidence 21110 001000000 011236899999999999999955431 000011111110
Q ss_pred ---------------CCceEEEEEeCC--CcCCCC---CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC------eEEEC
Q 010845 265 ---------------KDYIHVTLIEAN--EILSSF---DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ------KLILN 317 (499)
Q Consensus 265 ---------------~~~~~Vtlv~~~--~~l~~~---~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~------~v~~~ 317 (499)
+....|+++.|. .-+|.. .+++. ...+.||+++.+ ...++..+ ++++.
T Consensus 606 ~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~~eEv~-----~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~ 680 (1028)
T PRK06567 606 LFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLNHEELI-----YALALGVDFKENMQPLRINVDKYGHVESVEFE 680 (1028)
T ss_pred hhcchhccchhhhhhccCCceEEEecCChhhCCCCCCCHHHHH-----HHHHcCcEEEecCCcEEEEecCCCeEEEEEEE
Confidence 001128888886 345653 22332 234569999977 55555321 11111
Q ss_pred ------------------------------CCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeE
Q 010845 318 ------------------------------DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 318 ------------------------------~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~If 367 (499)
...+|+||.||+|+|..|+.... ..++-
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~----------------------~~~~s 738 (1028)
T PRK06567 681 NRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD----------------------EDKYS 738 (1028)
T ss_pred EEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc----------------------ccccc
Confidence 11468999999999999994321 01123
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010845 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
..||+-. .+..+...|+.+|+.++.+|.+++..
T Consensus 739 ~~~d~~~--------~f~Gtvv~A~as~k~~~~~i~~~l~~ 771 (1028)
T PRK06567 739 YFGDCNP--------KYSGSVVKALASSKEGYDAINKKLIN 771 (1028)
T ss_pred cccCCCC--------ccccHHHHHHHHHHhHHHHHHHHHhh
Confidence 4455542 22346788999999999999888763
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=183.20 Aligned_cols=290 Identities=17% Similarity=0.149 Sum_probs=190.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC---c-ccc---cchhhhhccCCCCCccccchhhhccccccCCCeE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---M-VFT---PLLASTCVGTLEFRSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~---~-~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (499)
+.+|+|||+|||+.+||.++++...+-+|+|---. . ..+ .--.+...|.++.- .-..+.+.++....+.+.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi-~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGI-TGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCccc-ccHHHHHHHHHHHHhhcce
Confidence 35899999999999999999999899999984311 0 000 00000011111110 0112333333344556788
Q ss_pred EEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHH
Q 010845 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 135 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
++..+|..+|...+.+.+... .+.+.+|.+|+|||+..+...+||..+..+.-+.+.... .
T Consensus 87 i~tEtVskv~~sskpF~l~td----------~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCA-V-------- 147 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTD----------ARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACA-V-------- 147 (322)
T ss_pred eeeeehhhccccCCCeEEEec----------CCceeeeeEEEecccceeeeecCCCCcchHHhcccchhh-c--------
Confidence 899999999999988777651 258999999999999988888888633222222221111 0
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHH-H
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT-Q 293 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~-~ 293 (499)
.... ....+.|-.+|||||.+++|-|..|..++ .+|++++|.+.+ +.+..+++ .
T Consensus 148 CDGa------apifrnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~f-----RAs~~Mq~ra 202 (322)
T KOG0404|consen 148 CDGA------APIFRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHF-----RASKIMQQRA 202 (322)
T ss_pred ccCc------chhhcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhh-----hHHHHHHHHH
Confidence 0001 11244567899999999999999999988 899999987433 23334444 3
Q ss_pred HHhCCCEEEeC-ceEEEeCC-----eEEEC-----CCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCC-CCC
Q 010845 294 LSKSGVRLVRG-IVKDVDSQ-----KLILN-----DGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEW-LRV 360 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~-----~v~~~-----~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~-l~~ 360 (499)
++..+|+++.+ .+.+..++ ++.++ +.+.++++-+++++|..|++ +++. .+++|.+|+|.+.+. -.|
T Consensus 203 ~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~T 281 (322)
T KOG0404|consen 203 EKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLT 281 (322)
T ss_pred hcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccc
Confidence 45568999988 44444433 33332 23579999999999999995 5554 889999999999854 555
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
+.|++||+||+..- --.++..|...|-++|-...+++
T Consensus 282 -svpG~FAAGDVqD~--------kyRQAvTaAgsGciaaldAe~yL 318 (322)
T KOG0404|consen 282 -SVPGVFAAGDVQDK--------KYRQAVTAAGSGCIAALDAERYL 318 (322)
T ss_pred -cccceeeccccchH--------HHHHHHhhhccchhhhhhHHHHh
Confidence 99999999999941 12344555555666554444443
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=194.83 Aligned_cols=274 Identities=19% Similarity=0.200 Sum_probs=182.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh---hhhccCCCC--CccccchhhhccccccCCCeE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---STCVGTLEF--RSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~---~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~ 134 (499)
...++|+||||||||-+||.+.+++|.+.=|+-. +|..+.+-. +...+.+.. ..+...+... . +...+.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~H---v-~~Y~vD 282 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAH---V-KQYDVD 282 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHH---H-hhcCch
Confidence 4568999999999999999999999988655532 233332211 111111110 0111112221 1 113344
Q ss_pred EEE-EEEEEEECC-----CCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC---ccCCCHHHHHH
Q 010845 135 FFL-SHCAGIDTD-----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA---TFLREVHHAQE 205 (499)
Q Consensus 135 ~~~-~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~---~~~~~~~~~~~ 205 (499)
.+. .+++.+.+. ...|++++ | ..+....+|+|||++.+..++||.+++. ..++...|
T Consensus 283 imn~qra~~l~~a~~~~~l~ev~l~n---G--------avLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCD--- 348 (520)
T COG3634 283 VMNLQRASKLEPAAVEGGLIEVELAN---G--------AVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCD--- 348 (520)
T ss_pred hhhhhhhhcceecCCCCccEEEEecC---C--------ceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCC---
Confidence 333 245555542 22455554 2 4789999999999999999999976421 11111111
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHH
Q 010845 206 IRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR 285 (499)
Q Consensus 206 ~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~ 285 (499)
-| -.++|+|+|||||++|+|.|..|+... .+||+++-.+-| +
T Consensus 349 -------------GP------LF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL-----k 390 (520)
T COG3634 349 -------------GP------LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL-----K 390 (520)
T ss_pred -------------Cc------ccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh-----h
Confidence 11 145579999999999999999999887 789999864322 2
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeCC-----eEEECC---C--cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCce
Q 010845 286 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRI 352 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~~-----~v~~~~---g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i 352 (499)
..+.+++.|+.. +|+++++ .-++|.++ ++...| | ..++-+-|++-+|..|| .|++.. ++++++|-|
T Consensus 391 AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEI 469 (520)
T COG3634 391 ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEI 469 (520)
T ss_pred hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccE
Confidence 344566777665 8999999 78888775 333332 3 25778889999999999 588776 888999999
Q ss_pred eeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 010845 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSL 401 (499)
Q Consensus 353 ~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~ 401 (499)
.||....| +.|+|||+|||+..+ -++...|+.+|..++-+
T Consensus 470 ivD~~g~T-svpGvFAAGD~T~~~--------yKQIIIamG~GA~AaL~ 509 (520)
T COG3634 470 IVDARGET-NVPGVFAAGDCTTVP--------YKQIIIAMGEGAKASLS 509 (520)
T ss_pred EEecCCCc-CCCceeecCcccCCc--------cceEEEEecCcchhhhh
Confidence 99999999 999999999999743 34455566666665543
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=217.96 Aligned_cols=288 Identities=16% Similarity=0.230 Sum_probs=151.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhh------------hhcc----CCC------C------
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS------------TCVG----TLE------F------ 113 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~------------~~~g----~~~------~------ 113 (499)
+++|+|||||++||++|+.|.+.|++++++|+++..+..+...+ .... .+. +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 37899999999999999999999999999999987654432111 0000 000 1
Q ss_pred ---CccccchhhhccccccCCCeEEEEEEEEEEECCC-----CEEEEeeecCccccCCCceeeeeCCeEEEcCCC--Ccc
Q 010845 114 ---RSVAEPIARIQPAISREPGSYFFLSHCAGIDTDN-----HVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EAS 183 (499)
Q Consensus 114 ---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~--~~~ 183 (499)
.++...++.+...+.....++ ..++|+++.... ..+.+....++ +..+..||+||+|||. .|+
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~~g------~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTENDG------KEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETTTT------EEEEEEECEEEEEE-SSSCES
T ss_pred CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeecCC------eEEEEEeCeEEEcCCCcCCCC
Confidence 112223343333232222232 357788876532 34555442222 2346679999999995 477
Q ss_pred CCC--CCCccc---cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHH
Q 010845 184 TFG--IHGVKE---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (499)
Q Consensus 184 ~~~--ipG~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~ 258 (499)
.|. +||++. ..++.+++.+. +..+.|+|+|||+|.||+|+|.+|+...
T Consensus 154 ~P~~~~~G~e~F~G~i~HS~~yr~~----------------------~~f~gKrVlVVG~g~Sg~DIa~el~~~a----- 206 (531)
T PF00743_consen 154 IPEPSFPGLEKFKGEIIHSKDYRDP----------------------EPFKGKRVLVVGGGNSGADIAVELSRVA----- 206 (531)
T ss_dssp B-----CTGGGHCSEEEEGGG--TG----------------------GGGTTSEEEEESSSHHHHHHHHHHTTTS-----
T ss_pred CChhhhhhhhcCCeeEEccccCcCh----------------------hhcCCCEEEEEeCCHhHHHHHHHHHHhc-----
Confidence 774 899863 23333333221 2245679999999999999999998754
Q ss_pred HhcCCCCCceEEEEEeCC--CcCCCC-----------------------CHHHH--------------------------
Q 010845 259 QRYSHVKDYIHVTLIEAN--EILSSF-----------------------DDRLR-------------------------- 287 (499)
Q Consensus 259 ~~~~~~~~~~~Vtlv~~~--~~l~~~-----------------------~~~~~-------------------------- 287 (499)
.+|++..|. -++|.+ +..+.
T Consensus 207 ---------~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~ 277 (531)
T PF00743_consen 207 ---------KKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFF 277 (531)
T ss_dssp ---------CCEEEECC---------------------------------------------------------------
T ss_pred ---------CCeEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455555443 133211 00011
Q ss_pred -------HHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEE-eeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCC
Q 010845 288 -------HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWL 358 (499)
Q Consensus 288 -------~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i-~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l 358 (499)
+.+...+....|.+. ..|.++++++|+++||+++ ++|.||+|||+... +++.+.-+..+ ++.+..-.++
T Consensus 278 ~~~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~-~~~~~LYk~v 355 (531)
T PF00743_consen 278 SQHPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVD-DNRVRLYKHV 355 (531)
T ss_dssp ---------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S--SSSSSEETTT
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 111111222223332 2477788889999999875 69999999999988 77765433332 3334333433
Q ss_pred CCC--CCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 359 RVP--SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 359 ~~~--~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
-.+ .+|++..+|=+... ......+..||+++|+.+.
T Consensus 356 fp~~~~~ptLafIG~~~~~---------g~~fp~~ElQArw~a~v~s 393 (531)
T PF00743_consen 356 FPPNLDHPTLAFIGLVQPF---------GSIFPIFELQARWAARVFS 393 (531)
T ss_dssp EETETTSTTEEESS-SBSS---------S-HHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccc---------ccccccccccccccccccc
Confidence 222 35889999976521 2345678888888887653
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=204.65 Aligned_cols=346 Identities=20% Similarity=0.185 Sum_probs=213.0
Q ss_pred cccccccccccc--cccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010845 3 LFKHLLRNPTAK--SYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
+.--++|+|.++ |+..|.......| ..+..+.++..+..-.... .+..++. +...++|.|||||||||++|..
T Consensus 67 ~p~~~gRvcp~~~~ceg~cv~~~~~~~-v~i~~le~~i~d~~~~~g~---i~~~~~~-~~tg~~VaviGaGPAGl~~a~~ 141 (457)
T COG0493 67 LPAITGRVCPLGNLCEGACVLGIEELP-VNIGALERAIGDKADREGW---IPGELPG-SRTGKKVAVIGAGPAGLAAADD 141 (457)
T ss_pred CccccCccCCCCCceeeeeeeccCCCc-hhhhhHHHHHhhHHHHhCC---CCCCCCC-CCCCCEEEEECCCchHhhhHHH
Confidence 344578999999 9999988864433 4555555555444321111 1122211 1233899999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010845 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++||++|+.+..... ...|.+....-..-+......+.. .+++|+.....+.+ ++++.
T Consensus 142 L~~~G~~Vtv~e~~~~~GGl-----l~yGIP~~kl~k~i~d~~i~~l~~-~Gv~~~~~~~vG~~-----it~~~------ 204 (457)
T COG0493 142 LSRAGHDVTVFERVALDGGL-----LLYGIPDFKLPKDILDRRLELLER-SGVEFKLNVRVGRD-----ITLEE------ 204 (457)
T ss_pred HHhCCCeEEEeCCcCCCcee-----EEecCchhhccchHHHHHHHHHHH-cCeEEEEcceECCc-----CCHHH------
Confidence 99999999999998764432 111222221111112222222333 45777765444332 22222
Q ss_pred cCCCceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcC
Q 010845 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
-.-.||++++|||+. |+..++||.+ ...+..+..+...+...... ..+. ........++|+|||||
T Consensus 205 ------L~~e~Dav~l~~G~~~~~~l~i~g~d-----~~gv~~A~dfL~~~~~~~~~-~~~~-~~~~~~~gk~vvVIGgG 271 (457)
T COG0493 205 ------LLKEYDAVFLATGAGKPRPLDIPGED-----AKGVAFALDFLTRLNKEVLG-DFAE-DRTPPAKGKRVVVIGGG 271 (457)
T ss_pred ------HHHhhCEEEEeccccCCCCCCCCCcC-----CCcchHHHHHHHHHHHHHhc-cccc-ccCCCCCCCeEEEECCC
Confidence 134679999999976 7778999964 23333444443333211111 1110 00111233799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC----
Q 010845 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---- 311 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---- 311 (499)
.++++++......+. .+|+.+.+. + -....+....+...+...+.|+..... .-.++..
T Consensus 272 ~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~G 338 (457)
T COG0493 272 DTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGG 338 (457)
T ss_pred CCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCC
Confidence 999999988877763 578877532 2 222223333444555566677665543 2222221
Q ss_pred -------CeEEEC--------------CC--cEEeeeEEEEcCCCCcch--hc-ccCCCCCCCCCceeeCCCC-CCCCCC
Q 010845 312 -------QKLILN--------------DG--TEVPYGLLVWSTGVGPST--LV-KSLDLPKSPGGRIGIDEWL-RVPSVQ 364 (499)
Q Consensus 312 -------~~v~~~--------------~g--~~i~~D~vi~a~G~~p~~--~~-~~~~l~~~~~G~i~vd~~l-~~~~~~ 364 (499)
..+... .| .++++|+|+.++|+.++. .. ...++..+..|++.+|+.+ +| +.|
T Consensus 339 rV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~ 417 (457)
T COG0493 339 RVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIP 417 (457)
T ss_pred cEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCC
Confidence 111111 12 357899999999999983 22 2236778889999999998 77 999
Q ss_pred CeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 365 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 365 ~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
++||.||+.. | ..+...|+.+|+.+|+.|...+
T Consensus 418 ~vfa~gD~~~-----g----~~~vv~ai~eGr~aak~i~~~~ 450 (457)
T COG0493 418 GVFAGGDAVR-----G----AALVVWAIAEGREAAKAIDKEL 450 (457)
T ss_pred CeeeCceecc-----c----hhhhhhHHhhchHHHHhhhHHH
Confidence 9999999996 3 6778899999999999998443
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-21 Score=199.22 Aligned_cols=345 Identities=19% Similarity=0.226 Sum_probs=198.5
Q ss_pred ccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhccC
Q 010845 4 FKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDT 83 (499)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~ 83 (499)
+--.+|+|..||+-.|.-+++..|.. +.+.....-+.+- ..-+.++-++. ....++|.|||+|||||+||-+|.+
T Consensus 1732 peftgrvcpapcegactlgiie~pv~-iksie~aiid~af---~egwm~p~pp~-~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1732 PEFTGRVCPAPCEGACTLGIIEPPVG-IKSIECAIIDKAF---EEGWMKPCPPA-FRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred ccccCccCCCCcCcceeeecccCCcc-ccchhhHHHHHHH---HhcCCccCCcc-cccCcEEEEEccCchhhhHHHHHhh
Confidence 44568999999999999998887743 3323222212110 00112222222 2345899999999999999999999
Q ss_pred CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCC
Q 010845 84 SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLE 163 (499)
Q Consensus 84 ~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~ 163 (499)
.|+.|||+|+.++...- +.+++. .+..+... +.+-.. +....+++|+...-.+ +.+.++.
T Consensus 1807 ~gh~v~vyer~dr~ggl-l~ygip--nmkldk~v--v~rrv~-ll~~egi~f~tn~eig-----k~vs~d~--------- 1866 (2142)
T KOG0399|consen 1807 AGHTVTVYERSDRVGGL-LMYGIP--NMKLDKFV--VQRRVD-LLEQEGIRFVTNTEIG-----KHVSLDE--------- 1866 (2142)
T ss_pred cCcEEEEEEecCCcCce-eeecCC--ccchhHHH--HHHHHH-HHHhhCceEEeecccc-----ccccHHH---------
Confidence 99999999999875432 111111 11222211 111111 2233688886543222 2244333
Q ss_pred CceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHH
Q 010845 164 PWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 242 (499)
Q Consensus 164 ~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~g 242 (499)
-.-.+|.+|+|+|+. |+..++||-+ ++.+.-+.++..+-...+....+.+ .-...+.|+|+|||||.+|
T Consensus 1867 ---l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l~~ntk~lld~~~d~--~~~~~~gkkvivigggdtg 1936 (2142)
T KOG0399|consen 1867 ---LKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFLEKNTKSLLDSVLDG--NYISAKGKKVIVIGGGDTG 1936 (2142)
T ss_pred ---HhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHHHHhHHhhhcccccc--ceeccCCCeEEEECCCCcc
Confidence 244699999999987 8888999964 2233333333222111111111100 1123456899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceEEEEEe----CC------CcCCCCCH----H-HHHHHHHHHHhCC--CE-----
Q 010845 243 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE----AN------EILSSFDD----R-LRHYATTQLSKSG--VR----- 300 (499)
Q Consensus 243 ve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~----~~------~~l~~~~~----~-~~~~~~~~l~~~g--V~----- 300 (499)
-++.+.-.+.+. +.|.-++ +. ...|.+|. + -++.+.+..-+.- -.
T Consensus 1937 ~dcigtsvrhg~-------------~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~ 2003 (2142)
T KOG0399|consen 1937 TDCIGTSVRHGC-------------KSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKR 2003 (2142)
T ss_pred ccccccchhhcc-------------ceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeee
Confidence 999888777663 2221111 00 01122211 0 0111222211100 01
Q ss_pred EEeC---ceEEEeC----------Ce---EEECC-CcEEeeeEEEEcCCCCcc--hhcccCCCCCCCCCceeeC-CCCCC
Q 010845 301 LVRG---IVKDVDS----------QK---LILND-GTEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EWLRV 360 (499)
Q Consensus 301 v~~~---~v~~v~~----------~~---v~~~~-g~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd-~~l~~ 360 (499)
++.+ .|+.++- +. ++..+ .+.|+||+||+|.|+..+ ...+++++..|.++.|.+- +.+.+
T Consensus 2004 f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t 2083 (2142)
T KOG0399|consen 2004 FIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYST 2083 (2142)
T ss_pred eeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccc
Confidence 1111 2222211 11 11222 356899999999999887 3677888999988887764 44666
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
+.+.|||+|||-. | ..+...|+++|+.+|+.+....
T Consensus 2084 -~v~~vfaagdcrr-----g----qslvvwai~egrq~a~~vd~~~ 2119 (2142)
T KOG0399|consen 2084 -DVAKVFAAGDCRR-----G----QSLVVWAIQEGRQAARQVDELM 2119 (2142)
T ss_pred -cccceeecccccC-----C----ceEEEEEehhhhHHHHHHHHHh
Confidence 8999999999996 4 4567789999999999987643
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-22 Score=181.26 Aligned_cols=188 Identities=27% Similarity=0.358 Sum_probs=126.4
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc-ch-hhhhccCCCCCccccchh--hhccccccCCCeEE-EEE
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP-LL-ASTCVGTLEFRSVAEPIA--RIQPAISREPGSYF-FLS 138 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~-~~-~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~ 138 (499)
||||||||+||++||.+|++.+++|+|||+.+...+.. .+ .................+ ++...+. ..++++ +.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLK-NRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHH-HHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccc-cceEEEeecc
Confidence 69999999999999999999999999999887544421 11 111100000000000000 2211111 246666 567
Q ss_pred EEEEEECCCCEEE-----EeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHH
Q 010845 139 HCAGIDTDNHVVH-----CETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 139 ~v~~id~~~~~v~-----~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~ 213 (499)
++..|+...+.+. ..... .++..++.||+||+|||+.|+.|.+||. +......+..++..+...+.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~-- 150 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVE------TGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELLE-- 150 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEE------TTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHSS--
T ss_pred ccccccccccccccCcccceeec------cCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccccc--
Confidence 9999999888541 11101 1224689999999999999999999997 34455567777777655431
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~ 293 (499)
..++|+|||
T Consensus 151 ---------------~~~~v~VvG-------------------------------------------------------- 159 (201)
T PF07992_consen 151 ---------------SPKRVAVVG-------------------------------------------------------- 159 (201)
T ss_dssp ---------------TTSEEEEES--------------------------------------------------------
T ss_pred ---------------ccccccccc--------------------------------------------------------
Confidence 123888888
Q ss_pred HHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhc-ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccc
Q 010845 294 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV-KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~-~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~ 372 (499)
.+++ +..+++++++|++.||+++|+ +.|||||+|||
T Consensus 160 ------------------------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~ 196 (201)
T PF07992_consen 160 ------------------------------------------TEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDC 196 (201)
T ss_dssp ------------------------------------------TTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGG
T ss_pred ------------------------------------------cccccccccccccccccccccccccc-ccccccccccc
Confidence 4444 677899999999999999999 89999999999
Q ss_pred ccc
Q 010845 373 SGY 375 (499)
Q Consensus 373 a~~ 375 (499)
+.+
T Consensus 197 a~~ 199 (201)
T PF07992_consen 197 AGI 199 (201)
T ss_dssp BEE
T ss_pred ccc
Confidence 974
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=162.20 Aligned_cols=258 Identities=21% Similarity=0.318 Sum_probs=159.7
Q ss_pred cEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccchhhhhccCCCCCcccc-chhhhccccccCCCeEEEEEEE
Q 010845 64 RVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAE-PIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v 140 (499)
+.+|||||+||.+||.+|+.. ..+|.||..++..--...+..+. ..++.-++.+ ....+.+.+. +|+.. |
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~-~ylekfdv~eq~~~elg~~f~-----~~~~~-v 73 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIG-QYLEKFDVKEQNCHELGPDFR-----RFLND-V 73 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHH-HHHHhcCccccchhhhcccHH-----HHHHh-h
Confidence 468999999999999999863 56899998875421111110000 0000001100 1111111110 23333 7
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (499)
..++..++.+++++ +..+.|++|++|||.+|... ..|.+..+...++.+.++.++.++
T Consensus 74 ~~~~s~ehci~t~~-----------g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl---------- 131 (334)
T KOG2755|consen 74 VTWDSSEHCIHTQN-----------GEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKL---------- 131 (334)
T ss_pred hhhccccceEEecC-----------CceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHH----------
Confidence 77888888998877 24899999999999999754 344566777888888888888876
Q ss_pred CCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHHH---
Q 010845 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLS--- 295 (499)
Q Consensus 221 ~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l~--- 295 (499)
.+.|.|.|+|.|-++.|++.++.. .+|++.... .+-. -+++.+.+.+...|+
T Consensus 132 -------~kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~ 188 (334)
T KOG2755|consen 132 -------VKAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINLRADR 188 (334)
T ss_pred -------hhcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhhhccc
Confidence 345799999999999999999976 344443332 1111 122222222222221
Q ss_pred ---------------------------------------------hCCCEEEeCceEEEeC----CeEEECC-----CcE
Q 010845 296 ---------------------------------------------KSGVRLVRGIVKDVDS----QKLILND-----GTE 321 (499)
Q Consensus 296 ---------------------------------------------~~gV~v~~~~v~~v~~----~~v~~~~-----g~~ 321 (499)
++-+.+..+.+..+.. ..++-.+ ...
T Consensus 189 s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~q 268 (334)
T KOG2755|consen 189 STRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQ 268 (334)
T ss_pred ccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccce
Confidence 0001111111111110 0111111 136
Q ss_pred EeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010845 322 VPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 322 i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
+.||.+++++|..|| ++.-...++..++|.+.||+.|++ +.|++||+||++.
T Consensus 269 lt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvct 321 (334)
T KOG2755|consen 269 LTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCT 321 (334)
T ss_pred eeeeEEEeccccCcCceEEecChhhhccccCeeehhhccc-cccceeeecceec
Confidence 779999999999999 566555677788899999999999 9999999999886
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=161.16 Aligned_cols=319 Identities=18% Similarity=0.213 Sum_probs=190.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (499)
-.++++|||||+||++||+.|++.|++|+|+|+++....+-....-. .+..+-...-+...+......++++++. ++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~--FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae 200 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKT--FPTNDCSICILAPKMVEVSNHPNIELITYAE 200 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhcc--CCCcccchhhccchhhhhccCCceeeeeeee
Confidence 35789999999999999999999999999999999876552111100 0001101111222222344445555443 35
Q ss_pred EEEEECCCCEEEEe--ee--------------------------------------------------c-----------
Q 010845 140 CAGIDTDNHVVHCE--TV--------------------------------------------------T----------- 156 (499)
Q Consensus 140 v~~id~~~~~v~~~--~~--------------------------------------------------~----------- 156 (499)
|+.|+-.-..+++. .. +
T Consensus 201 V~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~ 280 (622)
T COG1148 201 VEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCE 280 (622)
T ss_pred eeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhh
Confidence 55543322111110 00 0
Q ss_pred ----Cc--cccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCcc-CCCHHHHHHHHHHHHHHHhhcCCCC----CCHH
Q 010845 157 ----DE--LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPG----ISEE 225 (499)
Q Consensus 157 ----~~--~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~ 225 (499)
.. .-+..++..++....+|+|||-.+....-.. ++.+. +.++-...++.+.+. +.-|. ..+.
T Consensus 281 ~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~--EyGYG~~~nVIT~lElErml~-----~~GPT~GkvlrpS 353 (622)
T COG1148 281 KACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKE--EYGYGKYPNVITNLELERMLN-----PNGPTGGKVLRPS 353 (622)
T ss_pred hcCCccccccCCCCcEEEEEeceEEEEccccccCcchhh--hcCCCCCcchhhHHHHHHHhc-----cCCCCCceEEecC
Confidence 00 0012345567889999999998876543221 22221 233434444433321 11111 0112
Q ss_pred HHhccccEEEe---CcCh--------HHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHH
Q 010845 226 EKSRLLHCVVV---GGGP--------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQ 293 (499)
Q Consensus 226 ~~~~~~~vvVv---GgG~--------~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~ 293 (499)
+.+..|+|+.| |.-. +-+.+...|.. ...++++||+ .+|+++..+ +. ++....++..+.
T Consensus 354 dg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKq--A~~Ike~~Pd----~~v~I~YmDiRa---fG~~yEefY~~~ 424 (622)
T COG1148 354 DGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQ--AQLIKERYPD----TDVTIYYMDIRA---FGKDYEEFYVRS 424 (622)
T ss_pred CCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhh--hhhhhhcCCC----cceeEEEEEeec---cCccHHHHHHhh
Confidence 23445677664 5433 33444444443 3355677777 788887765 43 333444555555
Q ss_pred HHhCCCEEEeCceEEEe---CCe--EEECC---C--cEEeeeEEEEcCCCCcch----hcccCCCCCCCCCceeeC-CCC
Q 010845 294 LSKSGVRLVRGIVKDVD---SQK--LILND---G--TEVPYGLLVWSTGVGPST----LVKSLDLPKSPGGRIGID-EWL 358 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~---~~~--v~~~~---g--~~i~~D~vi~a~G~~p~~----~~~~~~l~~~~~G~i~vd-~~l 358 (499)
-++.||+++.+++.++. ++. |..+| | .++++|+||+++|..|.+ +.+-+||+.+++|++... +.+
T Consensus 425 Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl 504 (622)
T COG1148 425 QEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKL 504 (622)
T ss_pred hhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCc
Confidence 55789999999665553 333 33333 2 478999999999999963 566679999999998776 555
Q ss_pred CC--CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 359 RV--PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 359 ~~--~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+. .+.++||.+|-|.. |+..+.++.||..||......+.
T Consensus 505 ~pv~s~~~GIflAG~aqg----------PkdI~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 505 RPVDSNRDGIFLAGAAQG----------PKDIADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred ccccccCCcEEEeecccC----------CccHHHHHHHhHHHHHHHHHHhh
Confidence 53 26789999999885 89999999999999887776665
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=167.48 Aligned_cols=174 Identities=18% Similarity=0.146 Sum_probs=107.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCCCcccccchh----------hh---hccCCC-----CCc---cc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLA----------ST---CVGTLE-----FRS---VA 117 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~~~----------~~---~~g~~~-----~~~---~~ 117 (499)
..+.+|+|||||++||++|++|++.|.. ++|+|++......+... .. ..+... ... +.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 4568999999999999999999999998 99999996443221110 00 000000 001 11
Q ss_pred cchhhhccccccCCCeEEEE-EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC--CCccCCCCCCcccc-
Q 010845 118 EPIARIQPAISREPGSYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVKEN- 193 (499)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG--~~~~~~~ipG~~~~- 193 (499)
..+......+.....+.+.. .++...+.+.+.+++....++ ..++.+|+||+||| +.|+.|.++|.++.
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~-------~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~ 158 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG-------TGELTADFVVVATGHLSEPYIPDFAGLDEFK 158 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-------eeeEecCEEEEeecCCCCCCCCCCCCccCCC
Confidence 12222222222222333322 233444444456665543322 11278999999999 56888999998642
Q ss_pred --CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEE
Q 010845 194 --ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (499)
Q Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vt 271 (499)
.++...+.+. +.-++|+|+|||+|.||+++|.+|++.+ .+||
T Consensus 159 g~~~HS~~~~~~----------------------~~~~GKrV~VIG~GaSA~di~~~l~~~g--------------a~vt 202 (443)
T COG2072 159 GRILHSADWPNP----------------------EDLRGKRVLVIGAGASAVDIAPELAEVG--------------ASVT 202 (443)
T ss_pred ceEEchhcCCCc----------------------cccCCCeEEEECCCccHHHHHHHHHhcC--------------CeeE
Confidence 1222222111 2245679999999999999999999987 7888
Q ss_pred EEeCC
Q 010845 272 LIEAN 276 (499)
Q Consensus 272 lv~~~ 276 (499)
++.|.
T Consensus 203 ~~qRs 207 (443)
T COG2072 203 LSQRS 207 (443)
T ss_pred EEecC
Confidence 88886
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=164.28 Aligned_cols=227 Identities=17% Similarity=0.142 Sum_probs=136.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh--------h-----------hhccCC----------
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA--------S-----------TCVGTL---------- 111 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~--------~-----------~~~g~~---------- 111 (499)
..++|+|||||+|||.+|+.|.++|++++++|+.+.....+... . ...+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 35799999999999999999999999999999997654332211 0 111111
Q ss_pred ---CCCccccchhhhccccccCCCeEEEEEEEEEEECCC-CEEEEeeecCccccCCCceeeeeCCeEEEcCCCC--ccCC
Q 010845 112 ---EFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--ASTF 185 (499)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~--~~~~ 185 (499)
+..++...++.+...+.....++| ..+|..++... +.+.+...+... ...+.-||.||+|||.. |+.|
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~~-----~~~~~ifd~VvVctGh~~~P~~P 158 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNGT-----QIEEEIFDAVVVCTGHYVEPRIP 158 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCCc-----ceeEEEeeEEEEcccCcCCCCCC
Confidence 011222233333322222222333 45667777665 344444322211 02477899999999976 7888
Q ss_pred CCCCcc--c---cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHh
Q 010845 186 GIHGVK--E---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (499)
Q Consensus 186 ~ipG~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~ 260 (499)
.+||.. . ..++..++.. .+..+.|+|+|||+|+||.|++.+++...
T Consensus 159 ~~~g~~~~~f~G~~iHS~~Yk~----------------------~e~f~~k~VlVIG~g~SG~DIs~d~~~~a------- 209 (448)
T KOG1399|consen 159 QIPGPGIESFKGKIIHSHDYKS----------------------PEKFRDKVVLVVGCGNSGMDISLDLLRVA------- 209 (448)
T ss_pred cCCCCchhhcCCcceehhhccC----------------------cccccCceEEEECCCccHHHHHHHHHHhc-------
Confidence 888732 1 1222222111 11234479999999999999999998876
Q ss_pred cCCCCCceEEEEEeC----CCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeCCe-EEECCCcEEeeeEEEEcCCCCc
Q 010845 261 YSHVKDYIHVTLIEA----NEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQK-LILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 261 ~~~~~~~~~Vtlv~~----~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~-v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+|++... ....+. ....++..+.. |..+++++ +.++++....+|.||+|||+.-
T Consensus 210 -------k~v~~~~~~~~~~~~~~~------------~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y 269 (448)
T KOG1399|consen 210 -------KEVHLSVVSPKVHVEPPE------------ILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKY 269 (448)
T ss_pred -------cCcceeeecccccccccc------------eeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEe
Confidence 55665532 000000 00112333333 67777777 4556677889999999999987
Q ss_pred c-hhcccC
Q 010845 336 S-TLVKSL 342 (499)
Q Consensus 336 ~-~~~~~~ 342 (499)
. +++...
T Consensus 270 ~fPfl~~~ 277 (448)
T KOG1399|consen 270 KFPFLETL 277 (448)
T ss_pred ecceeccC
Confidence 6 555443
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=142.46 Aligned_cols=304 Identities=19% Similarity=0.184 Sum_probs=167.1
Q ss_pred CCCcEEEECCchHHHHHHHhccC--CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
..++|+|||+||||+.+|..|.+ .+++|+|+|+.+.. |.-.-++++....+...+...+... +......|+..
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP-FGLvRyGVAPDHpEvKnvintFt~~----aE~~rfsf~gN 93 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP-FGLVRYGVAPDHPEVKNVINTFTKT----AEHERFSFFGN 93 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc-cceeeeccCCCCcchhhHHHHHHHH----hhccceEEEec
Confidence 34699999999999999998877 46899999998753 2222334444444444333334333 33345555432
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
--. .+.+.+.. -+-.||.+|+|.|+. ++..+|||.+ +..+..+..+.....
T Consensus 94 v~v-----G~dvsl~e------------L~~~ydavvLaYGa~~dR~L~IPGe~-----l~~V~Sarefv~Wyn------ 145 (468)
T KOG1800|consen 94 VKV-----GRDVSLKE------------LTDNYDAVVLAYGADGDRRLDIPGEE-----LSGVISAREFVGWYN------ 145 (468)
T ss_pred cee-----cccccHHH------------HhhcccEEEEEecCCCCcccCCCCcc-----cccceehhhhhhhcc------
Confidence 111 12333333 244699999999987 7788999964 222223333333321
Q ss_pred CCCCCC-HHHHhccccEEEeCcChHHHHHHHHHHHHHHHHH-HHhcCC-------CCCceEEEEEeCCCcC-CCC-----
Q 010845 218 DVPGIS-EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV-RQRYSH-------VKDYIHVTLIEANEIL-SSF----- 282 (499)
Q Consensus 218 ~~p~~~-~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~-~~~~~~-------~~~~~~Vtlv~~~~~l-~~~----- 282 (499)
.+|+.. -+..-...+|+|||.|++++++|..|.......+ ..+.|. ..+-.+|+|+-|...+ ..|
T Consensus 146 g~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKEL 225 (468)
T KOG1800|consen 146 GLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKEL 225 (468)
T ss_pred CCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHH
Confidence 111100 0112235699999999999999999865332222 111221 1233678888765221 111
Q ss_pred ---------------------------------CHHHHHHHHHHHHhC---------CCE------------EEeC--ce
Q 010845 283 ---------------------------------DDRLRHYATTQLSKS---------GVR------------LVRG--IV 306 (499)
Q Consensus 283 ---------------------------------~~~~~~~~~~~l~~~---------gV~------------v~~~--~v 306 (499)
.+++.+.+.+.++++ +.+ |..+ .|
T Consensus 226 RE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v 305 (468)
T KOG1800|consen 226 REVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGV 305 (468)
T ss_pred HHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccc
Confidence 012222222222220 111 1101 01
Q ss_pred EEEeCC--------eEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCC---CCCCeEEecccccc
Q 010845 307 KDVDSQ--------KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVP---SVQDVFAVGDCSGY 375 (499)
Q Consensus 307 ~~v~~~--------~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~---~~~~Ifa~GD~a~~ 375 (499)
.++.-. .+.+.+-++++|++++.++|++..++.. +++.|..-.+.-|...++. -.|++|+.|-|..
T Consensus 306 ~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~--gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~- 382 (468)
T KOG1800|consen 306 SGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS--GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKH- 382 (468)
T ss_pred cceEEEeeeehhhcccccCceEeeccceeEeeeeecccccCC--CCCcccccCcccCCCceEEeeccCCceEEEeeecc-
Confidence 111000 1111223579999999999999876543 3444433223333333331 3699999999996
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 376 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 376 ~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|. ......++++|..+|..|.+.++
T Consensus 383 ----GP---~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 383 ----GP---TGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred ----CC---cceeeehhhhHHHHHHHHHHHHH
Confidence 32 23345678889999999888776
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-17 Score=148.35 Aligned_cols=167 Identities=21% Similarity=0.199 Sum_probs=90.3
Q ss_pred EEECCchHHHHHHHhccCCCCe-EEEEcCCCCcccccc------------hhhhhccCCCCC----------------cc
Q 010845 66 VVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPL------------LASTCVGTLEFR----------------SV 116 (499)
Q Consensus 66 vIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~------------~~~~~~g~~~~~----------------~~ 116 (499)
+|||||++||++|..|.+.|.+ |+|||+++....... ......+..+.. ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999999855422211 000000000000 00
Q ss_pred ccchhhhccccccCCCeEE-EEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC--CccCCCCCC-ccc
Q 010845 117 AEPIARIQPAISREPGSYF-FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHG-VKE 192 (499)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~--~~~~~~ipG-~~~ 192 (499)
...+.+++..+.+..+..+ ...+|+++..+++.+.+...+ ..++.+|+||+|||. .|+.|.+|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~---------~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRD---------GRTIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETT---------S-EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEe---------cceeeeeeEEEeeeccCCCCcccccccccc
Confidence 0111222222222233333 346888888777655555421 147889999999995 688888999 333
Q ss_pred cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEE
Q 010845 193 NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272 (499)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtl 272 (499)
..++...+.+. ...+.++|+|||+|.+|+|+|..|.+.+ .+|++
T Consensus 152 ~~~h~~~~~~~----------------------~~~~~k~V~VVG~G~SA~d~a~~l~~~g--------------~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWRDP----------------------EDFKGKRVVVVGGGNSAVDIAYALAKAG--------------KSVTL 195 (203)
T ss_dssp EEEEGGG-STT----------------------GGCTTSEEEEE--SHHHHHHHHHHTTTC--------------SEEEE
T ss_pred ceEehhhcCCh----------------------hhcCCCcEEEEcChHHHHHHHHHHHhhC--------------CEEEE
Confidence 33333222111 1123479999999999999999998876 89999
Q ss_pred EeCCC
Q 010845 273 IEANE 277 (499)
Q Consensus 273 v~~~~ 277 (499)
+.|.+
T Consensus 196 ~~R~~ 200 (203)
T PF13738_consen 196 VTRSP 200 (203)
T ss_dssp EESS-
T ss_pred EecCC
Confidence 99864
|
... |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-15 Score=145.21 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=94.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCcccccch--hhhhccCCCCCc-----------------------
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTLEFRS----------------------- 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~~~~~~--~~~~~g~~~~~~----------------------- 115 (499)
.+++++||.||++|+.|..|.+.+ .++..+|+++.+.|+|.+ ++.-.......+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 368999999999999999998765 899999999999888643 222111111110
Q ss_pred -----------cccchhhhccccccC-CCeEEEEEEEEEEECCCC----EEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 116 -----------VAEPIARIQPAISRE-PGSYFFLSHCAGIDTDNH----VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 116 -----------~~~~~~~~~~~~~~~-~~~~~~~~~v~~id~~~~----~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
....+.++....+.. .....+..+|+.|++... .+.+...+ ..+....+.++.||||||
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-----~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-----SDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-----TTS-EEEEEESEEEE---
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-----cCCCeeEEEeCeEEECcC
Confidence 000122221111111 221334678999887653 24433311 112346899999999999
Q ss_pred CCccCCCCCC-cc--ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHH
Q 010845 180 AEASTFGIHG-VK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (499)
Q Consensus 180 ~~~~~~~ipG-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~ 256 (499)
..|..|..-. .. +.+++..++..... .....++|+|||||.+|.|++..|.+.+
T Consensus 157 ~~P~iP~~~~~~~~~~~v~Hss~~~~~~~--------------------~~~~~~~V~VVGgGQSAAEi~~~L~~~~--- 213 (341)
T PF13434_consen 157 GQPRIPEWFQDLPGSPRVFHSSEYLSRID--------------------QSLAGKRVAVVGGGQSAAEIFLDLLRRG--- 213 (341)
T ss_dssp -EE---GGGGGGTT-TTEEEGGGHHHHHT-------------------------EEEEEE-SSHHHHHHHHHHHHH----
T ss_pred CCCCCCcchhhcCCCCCEEEehHhhhccc--------------------cccCCCeEEEECCcHhHHHHHHHHHhCC---
Confidence 8887764322 21 34444443322210 0133469999999999999999998765
Q ss_pred HHHhcCCCCCceEEEEEeCCC
Q 010845 257 VRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 257 ~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
+..+|+++.|+.
T Consensus 214 ---------~~~~V~~i~R~~ 225 (341)
T PF13434_consen 214 ---------PEAKVTWISRSP 225 (341)
T ss_dssp ---------TTEEEEEEESSS
T ss_pred ---------CCcEEEEEECCC
Confidence 227999999873
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=138.70 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcc-CCCCeEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~-~~g~~V~lie~~~~~~ 98 (499)
..++|+||||||||++||.+|. +.|++|+|+|+.+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4578999999999999999764 5799999999998764
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-12 Score=122.46 Aligned_cols=295 Identities=17% Similarity=0.166 Sum_probs=171.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCcccccch--hhhhcc------CCCCCccc-------------
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVG------TLEFRSVA------------- 117 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~~~~~~--~~~~~g------~~~~~~~~------------- 117 (499)
+...|++.||-||+-|+.|..|.+.+ .++..+|+.+.|.|+|.+ ++.-.. .....+-.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 34579999999999999999998864 789999999999988642 221111 00000000
Q ss_pred ---------------cchhhhccccccC-CCeEEEEEEEE---EEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 118 ---------------EPIARIQPAISRE-PGSYFFLSHCA---GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 118 ---------------~~~~~~~~~~~~~-~~~~~~~~~v~---~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
..+.++....+.. +.++ ...+|+ .+|.+..........+ ...+.+..|||++
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~r-fg~~V~~i~~~~~d~~~~~~~~t~~--------~~~y~ar~lVlg~ 153 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLR-FGEEVTDISSLDGDAVVRLFVVTAN--------GTVYRARNLVLGV 153 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccc-cCCeeccccccCCcceeEEEEEcCC--------CcEEEeeeEEEcc
Confidence 0011111100000 1111 235666 4444443332222111 1378999999999
Q ss_pred CCCccCCC-CCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHH
Q 010845 179 GAEASTFG-IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (499)
Q Consensus 179 G~~~~~~~-ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~ 256 (499)
|.+|..|+ +..+. +.+++... +..+. .+.....+|+|||+|-+|.|+-..|....
T Consensus 154 G~~P~IP~~f~~l~~~~vfHss~------~~~~~--------------~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~--- 210 (436)
T COG3486 154 GTQPYIPPCFRSLIGERVFHSSE------YLERH--------------PELLQKRSVTVIGSGQSAAEIFLDLLNSQ--- 210 (436)
T ss_pred CCCcCCChHHhCcCccceeehHH------HHHhh--------------HHhhcCceEEEEcCCccHHHHHHHHHhCC---
Confidence 99998873 23322 23333222 11111 11112235999999999999988775422
Q ss_pred HHHhcCCCCCceEEEEEeCC-CcCCC---------CCHHHHHH-----------H-------------------HHH---
Q 010845 257 VRQRYSHVKDYIHVTLIEAN-EILSS---------FDDRLRHY-----------A-------------------TTQ--- 293 (499)
Q Consensus 257 ~~~~~~~~~~~~~Vtlv~~~-~~l~~---------~~~~~~~~-----------~-------------------~~~--- 293 (499)
+. .+.++.++.|+ ..+|. |.|+..++ + -+.
T Consensus 211 -----~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 211 -----PP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred -----CC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 21 12467788876 45542 12221111 1 111
Q ss_pred --HH--hCCCEEEeC-ceEEEeCCe---EEEC-------CCcEEeeeEEEEcCCCCcc--hhcccCC--CCCCCCCceee
Q 010845 294 --LS--KSGVRLVRG-IVKDVDSQK---LILN-------DGTEVPYGLLVWSTGVGPS--TLVKSLD--LPKSPGGRIGI 354 (499)
Q Consensus 294 --l~--~~gV~v~~~-~v~~v~~~~---v~~~-------~g~~i~~D~vi~a~G~~p~--~~~~~~~--l~~~~~G~i~v 354 (499)
+. +.+|.++.+ +|..+++.+ +.+. +.+++++|.||+|||++.. +++..+. +..|++|...|
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I 363 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVI 363 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEe
Confidence 11 345777777 788887653 4431 2357899999999999954 4766553 66788999999
Q ss_pred CCCCCCCCC----CCeEEeccccccccCCCCCCCCchHHHHHHHHHH
Q 010845 355 DEWLRVPSV----QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397 (499)
Q Consensus 355 d~~l~~~~~----~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~ 397 (499)
+..+++... -.||+.|-+....+ .| -|.+.-.|.+.+.+
T Consensus 364 ~~dY~v~~~~~~~~~ifvqn~e~htHG-ig---~pdLsl~a~Raa~I 406 (436)
T COG3486 364 GRDYRVLWDGPGKGRIFVQNAELHTHG-IG---APDLSLGAWRAAVI 406 (436)
T ss_pred cCceeeecCCCCcceEEEecccccccc-cC---CccchHHHHHHHHH
Confidence 988766332 36999998875322 23 36666667665554
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-12 Score=129.34 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=103.5
Q ss_pred EEeCcChHHHHHH-HHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe
Q 010845 234 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD 310 (499)
Q Consensus 234 vVvGgG~~gve~A-~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~ 310 (499)
+|++.|.+|+|.+ ..++++... -+.+|+++... +.++.+ ++.+.+.+.+++.|++++++ +|.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 7788999999999 555432110 02899999875 666654 78889999999999999999 888876
Q ss_pred C--CeE---EECCC--cEEeeeEEEEcCCCCcch-hccc--------CCCCC--C-------------C----CCceeeC
Q 010845 311 S--QKL---ILNDG--TEVPYGLLVWSTGVGPST-LVKS--------LDLPK--S-------------P----GGRIGID 355 (499)
Q Consensus 311 ~--~~v---~~~~g--~~i~~D~vi~a~G~~p~~-~~~~--------~~l~~--~-------------~----~G~i~vd 355 (499)
. +.+ ...++ .++++|.||+|+|..+.. +..+ +++++ . + .-.|.||
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d 366 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD 366 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence 3 333 23344 358999999999987653 2111 02222 0 0 1127777
Q ss_pred CCCCC------CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010845 356 EWLRV------PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 356 ~~l~~------~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
+.||. +.++|+||+|++..-+++.-. ---.-+|+..|-+||++|...
T Consensus 367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~---~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 367 ATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE---GCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CCcCcccCCCCeeccceEEeeehhcCCchHHh---CCCchhHHHHHHHHHHHHHHh
Confidence 77775 257999999999863221100 001237888888888888654
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-10 Score=110.38 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=96.5
Q ss_pred CCcEEEECCchHHHHHHHhccCC---CCeEEEEcCCCCcc----cccchh----hhhccCCC------------------
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMV----FTPLLA----STCVGTLE------------------ 112 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~---g~~V~lie~~~~~~----~~~~~~----~~~~g~~~------------------ 112 (499)
+++|+|||||++|+.+|.+|.+. ...|+|||+.+.+. |++..+ .+..+.++
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 46899999999999999999763 22399999886542 221111 01111110
Q ss_pred ----------CCc--------cccchhhhccccccCC---CeEEEEEEEEEEECC--CCEEEEeeecCccccCCCceeee
Q 010845 113 ----------FRS--------VAEPIARIQPAISREP---GSYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKI 169 (499)
Q Consensus 113 ----------~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~i 169 (499)
.+. +...+++.+..+.... .+.+++.+++++... .....+.. .++ ...
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~-~~g--------~~~ 151 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTT-ADG--------PSE 151 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEec-CCC--------Cee
Confidence 000 0001111111111112 377788888888766 22222222 222 477
Q ss_pred eCCeEEEcCCCCccCCCC-----CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHH
Q 010845 170 SYDKLVIALGAEASTFGI-----HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 244 (499)
Q Consensus 170 ~yd~LViAtG~~~~~~~i-----pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve 244 (499)
.+|-+|+|||..+.++.. +|... .+.+...+..+ ...+..-+|+|+|.|.+-++
T Consensus 152 ~ad~~Vlatgh~~~~~~~~~~~~~~~~~---~ia~~~~~~~l------------------d~v~~~drVli~GsgLt~~D 210 (474)
T COG4529 152 IADIIVLATGHSAPPADPAARDLKGSPR---LIADPYPANAL------------------DGVDADDRVLIVGSGLTSID 210 (474)
T ss_pred eeeEEEEeccCCCCCcchhhhccCCCcc---eeccccCCccc------------------ccccCCCceEEecCCchhHH
Confidence 899999999977544332 11111 11111111000 01122237999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc
Q 010845 245 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (499)
Q Consensus 245 ~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 278 (499)
....+.+.+. ..+||++.|.-+
T Consensus 211 ~v~~l~~~gh------------~g~It~iSRrGl 232 (474)
T COG4529 211 QVLVLRRRGH------------KGPITAISRRGL 232 (474)
T ss_pred HHHHHhccCC------------ccceEEEecccc
Confidence 9999988663 268899887533
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=93.01 Aligned_cols=74 Identities=34% Similarity=0.560 Sum_probs=66.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 309 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v 309 (499)
+|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ .+.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 5899999999999999999987 899999997 6778999999999999999999999999 89988
Q ss_pred eCC--e--EEECCC
Q 010845 310 DSQ--K--LILNDG 319 (499)
Q Consensus 310 ~~~--~--v~~~~g 319 (499)
+.+ + |+++||
T Consensus 67 ~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 67 EKDGDGVEVTLEDG 80 (80)
T ss_dssp EEETTSEEEEEETS
T ss_pred EEeCCEEEEEEecC
Confidence 653 3 666665
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=103.84 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=54.8
Q ss_pred CCcCCC--CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCC--CCcc--------hh
Q 010845 276 NEILSS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTG--VGPS--------TL 338 (499)
Q Consensus 276 ~~~l~~--~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G--~~p~--------~~ 338 (499)
++++|. -...+.+.+...+++.||+++++ +|.+++.+ .+.+.+|+++.||.+|+|+| ..|. ++
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~i 180 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPI 180 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHH
Confidence 477775 24578888999999999999999 89999776 46667888999999999999 4442 35
Q ss_pred cccCCCCC
Q 010845 339 VKSLDLPK 346 (499)
Q Consensus 339 ~~~~~l~~ 346 (499)
++..|+++
T Consensus 181 A~~~G~~I 188 (408)
T COG2081 181 ARQFGHTI 188 (408)
T ss_pred HHHcCCcc
Confidence 56666443
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-09 Score=108.60 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=100.0
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcc----cccc------hhh---------------hhc------
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMV----FTPL------LAS---------------TCV------ 108 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~----~~~~------~~~---------------~~~------ 108 (499)
+++|+|||||++|+++|.+|.+. .++|+|||++.... |.+. +.. .+.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 46899999999999999999764 46899999975432 2210 000 000
Q ss_pred -------------cCCCCC-ccccchhhhccccc---cCCC--eEEE-EEEEEEEECCCCEEEEeeecCccccCCCceee
Q 010845 109 -------------GTLEFR-SVAEPIARIQPAIS---REPG--SYFF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFK 168 (499)
Q Consensus 109 -------------g~~~~~-~~~~~~~~~~~~~~---~~~~--~~~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~ 168 (499)
+...++ ....+++..+..+. ...+ +.++ ..+|++|+.....+.+...+++ ..
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg--------~~ 152 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL--------PS 152 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCC--------eE
Confidence 000011 01111222211111 1122 4544 4489999887777766542221 36
Q ss_pred eeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHH
Q 010845 169 ISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248 (499)
Q Consensus 169 i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~ 248 (499)
+.+|+||+|||..+..+ .++. . .+....+ +... ....+ ..+|+|+|.|.++++++..
T Consensus 153 i~aD~VVLAtGh~~p~~-~~~~-~-~yi~~pw-~~~~----------~~~i~---------~~~V~I~GtGLt~iD~v~~ 209 (534)
T PRK09897 153 ETFDLAVIATGHVWPDE-EEAT-R-TYFPSPW-SGLM----------EAKVD---------ACNVGIMGTSLSGLDAAMA 209 (534)
T ss_pred EEcCEEEECCCCCCCCC-Chhh-c-cccCCCC-cchh----------hcCCC---------CCeEEEECCCHHHHHHHHH
Confidence 89999999999753211 1111 1 1111111 1100 00111 2489999999999999999
Q ss_pred HHHHHHHHHH--------HhcCCCCCceEEEEEeCCCcC
Q 010845 249 LSDFIMRDVR--------QRYSHVKDYIHVTLIEANEIL 279 (499)
Q Consensus 249 l~~~~~~~~~--------~~~~~~~~~~~Vtlv~~~~~l 279 (499)
|...+. .+. -.|.....+.+|+.+.|.-++
T Consensus 210 Lt~~gG-~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 210 VAIQHG-SFIEDDKQHVVFHRDNASEKLNITLMSRTGIL 247 (534)
T ss_pred HHhcCC-ceeccCCCcceeeecCCCCCceEEEEeCCCCC
Confidence 986532 111 111111244688888876444
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-07 Score=89.15 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC---eEEECCC--cEEeeeEEEEcCCCC-cchhcccC--------CCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLILNDG--TEVPYGLLVWSTGVG-PSTLVKSL--------DLP 345 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~---~v~~~~g--~~i~~D~vi~a~G~~-p~~~~~~~--------~l~ 345 (499)
+.++.+.+.+.+++.|++++.+ +|.+++ ++ .+.+.++ .++.+|.+|+|+|.. +..+++.+ +++
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~ 341 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLD 341 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCC
Confidence 4688888999999999999998 888865 33 3444555 479999999999999 66554443 233
Q ss_pred C----CC---------------CCceeeCCCCCC----CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 010845 346 K----SP---------------GGRIGIDEWLRV----PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402 (499)
Q Consensus 346 ~----~~---------------~G~i~vd~~l~~----~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i 402 (499)
+ +. .-.|.+|++||. ..++|+||+|-+..-.++.-. ---.-+|+..|-+||++|
T Consensus 342 v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~---gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 342 VLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE---GCGSGVAVSTALHAAEQI 418 (419)
T ss_pred cCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc---CCCchhHHHHHHHHHHhh
Confidence 2 10 113789999984 138999999998863321100 001236788888888776
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=94.53 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=57.3
Q ss_pred HHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEE
Q 010845 257 VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 257 ~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~ 329 (499)
+.+.+|.+.+...--+.... ..+ .+..+.+.+.+.+++.|++++.+ +|++++. + +|.+.+|+ +.+|.||+
T Consensus 121 ~~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~ 197 (358)
T PF01266_consen 121 LRELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVL 197 (358)
T ss_dssp HHHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE
T ss_pred hhhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEe
Confidence 34455655543343444333 211 24678888889999999999999 8998864 3 37788887 99999999
Q ss_pred cCCCCcchhcccCCC
Q 010845 330 STGVGPSTLVKSLDL 344 (499)
Q Consensus 330 a~G~~p~~~~~~~~l 344 (499)
|+|.....++..++.
T Consensus 198 a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 198 AAGAWSPQLLPLLGL 212 (358)
T ss_dssp --GGGHHHHHHTTTT
T ss_pred cccccceeeeecccc
Confidence 999988776666654
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=98.55 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=40.9
Q ss_pred CCcCCCC--CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEECCCcEEeeeEEEEcCCCCc
Q 010845 276 NEILSSF--DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 276 ~~~l~~~--~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~---v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+++.|.- ..++.+.+.+.+++.||+++.+ +|.+++ +++ |.+++++++.||.||+|+|-..
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 3555543 3567788889999999999999 899985 344 6666778999999999999764
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=91.09 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=74.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc------------CCCC-----CHHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 294 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~------------l~~~-----~~~~~~~~~~~l 294 (499)
+|+|||||+.|+++|..|.+.+ .+|+++++.+. +|.+ +.++...+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999998876 78999997431 1333 257788888889
Q ss_pred HhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 295 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.|++++..+|.+++.+ .+.+++++++.+|.+|+|+|..|+
T Consensus 68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 999999988878888764 466677789999999999999886
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=95.96 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc-------h-----hhhhccCCCC----------C---
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL-------L-----ASTCVGTLEF----------R--- 114 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~-------~-----~~~~~g~~~~----------~--- 114 (499)
...++|+|||||+||+++|..|++.|++|+|||+++...+... + .......... .
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 4457999999999999999999999999999999764322100 0 0000000000 0
Q ss_pred -c---c-ccchhh-hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010845 115 -S---V-AEPIAR-IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 115 -~---~-~~~~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
. + ...+.+ +.... ...++.++.++|++|+.++..+.+... ++ .++.+|+||.|+|....
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~-~~~GV~~~~~~V~~I~~~~~~~~V~~~-dG--------~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERC-IANGVQFHQAKVKKVVHEESKSLVVCD-DG--------VKIQASLVLDATGFSRC 170 (447)
T ss_pred CcceeEEHHHHHHHHHHHH-hhcCCEEEeeEEEEEEEcCCeEEEEEC-CC--------CEEEcCEEEECcCCCcC
Confidence 0 0 001111 11112 235788888899999877665544431 12 37999999999998754
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.6e-07 Score=89.96 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcE-EeeeEEEEcCCCCcchhcccCCCCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS 347 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~~l~~~ 347 (499)
.++...+.+.+.++|++++.+ +|..++. + .+.+.+|++ ++|+.||.|.|.....+++..+++.+
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 456777778888889999999 8887754 3 345567766 99999999999999988888876653
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=95.14 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHh----CC--CEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCcchhcccCCCC
Q 010845 284 DRLRHYATTQLSK----SG--VRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 284 ~~~~~~~~~~l~~----~g--V~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
..+...+.+.+++ .| ++++.+ +|.+++.+ .|.+++| ++.+|.||+|+|.....+++.+|+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~ 283 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCC
Confidence 4677777788888 77 888888 89888643 3555555 7999999999999988888877764
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-07 Score=89.65 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=32.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 47999999999999999999999999999998654
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-07 Score=92.20 Aligned_cols=109 Identities=18% Similarity=0.286 Sum_probs=64.4
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCC-CCccc---ccchhhhhcc-----------C------------------
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR-NHMVF---TPLLASTCVG-----------T------------------ 110 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~-~~~~~---~~~~~~~~~g-----------~------------------ 110 (499)
||+|||||.||+.||..+++.|++|+|+..+ +.+.. .|.+.+...| .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 6999999999999999999999999999433 22211 1221111110 0
Q ss_pred --CCCCcc--ccc---hhh-hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC
Q 010845 111 --LEFRSV--AEP---IAR-IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (499)
Q Consensus 111 --~~~~~~--~~~---~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~ 180 (499)
+..+.. ..+ +.. +...+...+++.+++++|+++..+++.|.-....++ ..+.+|.+|+|||+
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--------~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--------EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--------EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--------CEEecCEEEEeccc
Confidence 000000 000 111 122355568999999999999887776653332223 58999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.8e-07 Score=91.29 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=70.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----CCCHHHH---------HHHHHHHHhC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFDDRLR---------HYATTQLSKS 297 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----~~~~~~~---------~~~~~~l~~~ 297 (499)
++|+|||||+.|+.+|..|++.+ .+.+|+++++....| .++..+. ..-.+.+.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~------------~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQG------------FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQEN 71 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhC------------CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHC
Confidence 48999999999999999998764 226899998763222 2222111 0012446778
Q ss_pred CCEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
||+++.+ .|..++.+ .|++++|+++.+|.+|+|||.+|.
T Consensus 72 ~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 9999998 78888764 678888999999999999999986
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=76.36 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=101.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC----------C-------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS----------S------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~----------~------------------- 281 (499)
.|+|||||++|+-+|..+++.+ .+|.++++.. +-. .
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 7999999999999999998866 7888888652 110 0
Q ss_pred ---------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----eEEEC-----------CCcEEeeeEEEEcCCCC
Q 010845 282 ---------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~----~v~~~-----------~g~~i~~D~vi~a~G~~ 334 (499)
.+..+...+.+...+.|++++.+ +|.++. ++ ++... +..++.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 01234455566667889999988 777763 23 22221 22479999999999987
Q ss_pred cc---hhcccCC---CCC--------CCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHH
Q 010845 335 PS---TLVKSLD---LPK--------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 400 (499)
Q Consensus 335 p~---~~~~~~~---l~~--------~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~ 400 (499)
.. .+.+... ... +......|+.+-++ +|++|++|=.+.... |.+...++...=.-.|+.+|+
T Consensus 173 a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~--~~~rmg~~fg~m~~sg~~~a~ 248 (257)
T PRK04176 173 AEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVH--GLPRMGPIFGGMLLSGKKVAE 248 (257)
T ss_pred cHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhc--CCCccCchhHhHHHhHHHHHH
Confidence 65 1222211 111 11122334444343 899999998776433 444445555545568999999
Q ss_pred HHHHHHH
Q 010845 401 LLNRIGK 407 (499)
Q Consensus 401 ~i~~~~~ 407 (499)
.|...++
T Consensus 249 ~~~~~~~ 255 (257)
T PRK04176 249 LILEKLK 255 (257)
T ss_pred HHHHHhh
Confidence 8887764
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-07 Score=101.36 Aligned_cols=39 Identities=23% Similarity=0.117 Sum_probs=35.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
...+|||||+|.||++||..+++.|.+|+|+|+......
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 357999999999999999999999999999999876543
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=89.32 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++||+||||||||+++|..|++.|++|+|+|++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45899999999999999999999999999999874
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.7e-07 Score=90.79 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=36.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP 101 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 101 (499)
++||+||||||||++||+.|++.|++|+|+|+.+...+.+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~ 42 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP 42 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc
Confidence 5899999999999999999999999999999987766543
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.7e-07 Score=92.75 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++||+|||||+||++||..+++.|++|+|||++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 35899999999999999999999999999999874
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=89.84 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=33.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.++|+|||||+||+++|..|++.|++|+|||+.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 579999999999999999999999999999988643
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-06 Score=85.76 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcccCCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l 344 (499)
+..+.+.+.+.+++.|++++.+ +|.+++. + .|.+.+| ++.+|.||+|+|.....+.+.+++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~ 213 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCC
Confidence 4678888888899999999998 7888753 2 3455555 799999999999988766665554
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-05 Score=77.99 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhC-CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhc
Q 010845 283 DDRLRHYATTQLSKS-GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~-gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 339 (499)
+..+...+.+.+.+. |++++.+ +|.+++.+.|.+.+| ++.+|.||+|+|...+.++
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g-~i~a~~VV~A~G~~s~~l~ 201 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRG-DVHADQVFVCPGADFETLF 201 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCC-cEEeCEEEECCCCChhhhC
Confidence 346666777777765 9999988 899998777887776 4789999999998876544
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=87.80 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
++|+||||||||+++|+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 48999999999999999999999999999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=90.46 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
..+||+|||||+||+++|..|++.|++|+|||+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 4589999999999999999999999999999985
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=79.73 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999988 99999998754
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=88.81 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.4
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
||+|||||+||+++|..|++.|++|+|||+++..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 6999999999999999999999999999988644
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=87.95 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++|+|||||+||+++|..|++.|++|+|+|+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 57899999999999999999999999999998864
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=89.75 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=33.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+++|+|||||+||++||..|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 3589999999999999999999999999999998653
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=89.39 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=33.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+++|+|||||+||++||+.|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999988654
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=88.14 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+..++|+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4468999999999999999999999999999999864
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=82.01 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=33.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
...||+|||||+||++||++|++.|++|+|||+++..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3579999999999999999999999999999998764
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=85.74 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=67.2
Q ss_pred cEEEECCchHHHHHHHhc--cCCCCeEEEEcCCCCcccccc------------hhhhhccCCCCC------------c--
Q 010845 64 RVVVLGSGWAGCRLMKGI--DTSLYDVVCVSPRNHMVFTPL------------LASTCVGTLEFR------------S-- 115 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L--~~~g~~V~lie~~~~~~~~~~------------~~~~~~g~~~~~------------~-- 115 (499)
||+|||||+||+++|.+| ++.|.+|+|||+++...+... +........+.. .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 699999999999999999 778999999998765422110 001111100000 0
Q ss_pred c-ccc---hh-hhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010845 116 V-AEP---IA-RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 116 ~-~~~---~~-~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
. ... +. .+...+. ..++.++.++|++|+.....+.+...+ | .++.+++||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~-g--------~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLAD-G--------RTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECC-C--------CEEEeeEEEECCCcccc
Confidence 0 000 11 1112222 356778889999998887744333211 2 48999999999996544
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-07 Score=96.41 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=61.5
Q ss_pred cEEEeCcChHHHHHHHH-------HHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEe
Q 010845 232 HCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR 303 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~-------l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~ 303 (499)
.++++|++..++|++.. +.+++ .+|+++... ..+..++..+...+.+.+++.||++++
T Consensus 162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~ 227 (557)
T PRK07843 162 NMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLL 227 (557)
T ss_pred cccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEe
Confidence 78999999999998754 34444 445554433 334456677888888999999999999
Q ss_pred C-ceEEEeCC-----eEEEC-CCc--EEeee-EEEEcCC-CCcc
Q 010845 304 G-IVKDVDSQ-----KLILN-DGT--EVPYG-LLVWSTG-VGPS 336 (499)
Q Consensus 304 ~-~v~~v~~~-----~v~~~-~g~--~i~~D-~vi~a~G-~~p~ 336 (499)
+ ++.++..+ +|+.. +++ ++.++ .||+|+| +.+|
T Consensus 228 ~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 228 NTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHN 271 (557)
T ss_pred CCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcC
Confidence 9 78777532 34443 443 47785 5888654 5544
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=87.53 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=33.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+.+|+|||||+||+++|..|++.|++|+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 468999999999999999999999999999988653
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.5e-06 Score=83.71 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
+..+.+.+.+.+++.|++++.+ +|.+++.+ . |.++++ ++.+|.||+|+|.....+...++
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g 208 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLG 208 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcc
Confidence 3466777778888899999998 78888653 2 444454 79999999999987666555544
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-06 Score=80.57 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..|+|||+|+||++||..|+..|.+|||+||..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 569999999999999999999999999999873
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=86.63 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=70.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---CCCC---------HHHHHHHHHHHHhCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV 299 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---~~~~---------~~~~~~~~~~l~~~gV 299 (499)
+|+|||||+.|+.+|..+.+.. .++.+|+++++.+.. +.++ .++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 4899999999999988875321 134899999986322 2111 2233344566778899
Q ss_pred EEEeCceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.++|.+++. +.|.+++|+++.+|.+|+|||..|.
T Consensus 70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 999888988875 4788899989999999999999986
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-06 Score=73.13 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=26.6
Q ss_pred EEECCchHHHHHHHhccCC-----CCeEEEEcCCCC
Q 010845 66 VVLGSGWAGCRLMKGIDTS-----LYDVVCVSPRNH 96 (499)
Q Consensus 66 vIIGgG~aGl~aA~~L~~~-----g~~V~lie~~~~ 96 (499)
+|||||++|++++.+|.+. ..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999765 568999999643
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-06 Score=86.97 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3457999999999999999999999999999999753
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=87.80 Aligned_cols=99 Identities=22% Similarity=0.288 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+||++.+.+.-. .+ .++...+.+. +. ..+++++. .+|
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------~~-~~~~~~~~~~---l~-~~GI~i~~~~~V 221 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR----------EE-PSVAALAKQY---ME-EDGITFLLNAHT 221 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC----------CC-HHHHHHHHHH---HH-HcCCEEEcCCEE
Confidence 468999999999999999999999999999998764211 00 1111111111 22 35677765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+...+.+.. ++ .+++||.||+|+|..|+..
T Consensus 222 ~~i~~~~~~v~v~~--~g--------~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 222 TEVKNDGDQVLVVT--ED--------ETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEEEecCCEEEEEE--CC--------eEEEcCEEEEeeCCCCCcc
Confidence 88887666555443 12 3799999999999998754
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.7e-06 Score=85.55 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (499)
-+++++|||||+.|+..|..+++.|.+|||||+.+++.-. ...++...+.+. +.+ .++.+.. .+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-----------~D~ei~~~~~~~---l~~-~gv~i~~~~~ 236 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-----------EDPEISKELTKQ---LEK-GGVKILLNTK 236 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-----------CCHHHHHHHHHH---HHh-CCeEEEccce
Confidence 3578999999999999999999999999999999875311 112233333333 334 5566655 47
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
++.++..++.+.+.... + +...+.+|++++|+|-+|+..+
T Consensus 237 v~~~~~~~~~v~v~~~~-g------~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 237 VTAVEKKDDGVLVTLED-G------EGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEEEecCCeEEEEEec-C------CCCEEEeeEEEEccCCccCCCC
Confidence 77776655534433211 1 1127889999999999988764
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.8e-06 Score=79.37 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
...||+|||||+|||++|+.|++.|++|+|||+++.+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 35799999999999999999999999999999997653
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=87.05 Aligned_cols=93 Identities=23% Similarity=0.444 Sum_probs=68.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc-------CCCC-----C--HHHHHHHHHHHHhC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-------LSSF-----D--DRLRHYATTQLSKS 297 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~-------l~~~-----~--~~~~~~~~~~l~~~ 297 (499)
+|+|||||+.|+.+|..|++.+ ++.+|+++++.+. ++.+ + .++.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998753 2268999998742 1111 1 12233345667888
Q ss_pred CCEEEeC-ceEEEeC--CeEEECC---CcEEe--eeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDS--QKLILND---GTEVP--YGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~--~~v~~~~---g~~i~--~D~vi~a~G~~p~ 336 (499)
||+++.+ +|.+++. +.+.+.+ ++++. +|.+|+|||.+|.
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 9999887 8998875 4676654 56666 9999999999986
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=85.52 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.||+||||||||++||..|++.|++|+|||++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4799999999999999999999999999998753
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.5e-05 Score=71.00 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=99.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-----------C-------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-----------~------------------- 281 (499)
.|+|||||++|+-+|..+++.+ .+|.++++...+. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 7999999999999999998876 7888888752110 0
Q ss_pred ---------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-----eEEEC-----------CCcEEeeeEEEEcCCC
Q 010845 282 ---------FDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-----KLILN-----------DGTEVPYGLLVWSTGV 333 (499)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~-----~v~~~-----------~g~~i~~D~vi~a~G~ 333 (499)
...++.+.+.+...+.|++++.+ .+.++.. + +|.+. |..++.++.||.|||.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 01234455566677889999988 7777642 2 34442 1247899999999997
Q ss_pred Ccc--h-hcccCCCCCCCC---C----------ceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHH
Q 010845 334 GPS--T-LVKSLDLPKSPG---G----------RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397 (499)
Q Consensus 334 ~p~--~-~~~~~~l~~~~~---G----------~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~ 397 (499)
... . +.+..++..... | ...|+.+-+ -+|++|++|=.+.-.+ |.+...++...=.-.|+.
T Consensus 169 ~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~--~~~g~~~~gm~~~~~~--~~~rmgp~fg~m~~sg~~ 244 (254)
T TIGR00292 169 DAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE--VVPNLYVAGMAVAAVH--GLPRMGPIFGGMLLSGKH 244 (254)
T ss_pred CchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc--ccCCEEEechhhhhhc--CCCCcCchHHHHHHhhHH
Confidence 764 2 333333322110 1 012222222 3899999998775322 444445555545567999
Q ss_pred HHHHHHHHH
Q 010845 398 LFSLLNRIG 406 (499)
Q Consensus 398 aa~~i~~~~ 406 (499)
+|+.|...+
T Consensus 245 ~a~~~~~~~ 253 (254)
T TIGR00292 245 VAEQILEKL 253 (254)
T ss_pred HHHHHHHHh
Confidence 998877654
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.2e-06 Score=87.82 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++.+|+|||||++||++|..|++.|++|+|||+.+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3578999999999999999999999999999987543
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.7e-06 Score=87.53 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47899999999999999999999999999998764
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=81.02 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=49.3
Q ss_pred eEEEEEeCCCcCCC--CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCc
Q 010845 268 IHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 268 ~~Vtlv~~~~~l~~--~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+++..+.++++|. ....+.+.+.+.+++.|++++.+ .|.+++.+ .+.+ +++++.+|.||+|+|...
T Consensus 87 v~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 87 LELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 55665555555543 34678888889999999999998 78887543 2344 566899999999999754
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.9e-06 Score=83.77 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 357899999999999999999999999999999754
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.9e-06 Score=85.97 Aligned_cols=94 Identities=26% Similarity=0.355 Sum_probs=68.9
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---CCC---------CHHHHHHHHHHHHh
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF---------DDRLRHYATTQLSK 296 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---~~~---------~~~~~~~~~~~l~~ 296 (499)
..++|||||||+.|+.+|..|.. ++.+|++|++.+.. |.+ ...+...+.+.++.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~--------------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 74 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDP--------------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAK 74 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCc--------------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhcc
Confidence 34589999999999998876632 12789999986321 221 12233334556677
Q ss_pred CCCEEEeCceEEEeCC--eEEE----------CCCcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRGIVKDVDSQ--KLIL----------NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~~v~~v~~~--~v~~----------~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+++++.++|++|+.+ .|.+ .+|+++++|.+|+|+|..+.
T Consensus 75 ~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 75 LPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred CCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 8999998899999754 6776 46678999999999999986
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-06 Score=86.26 Aligned_cols=101 Identities=12% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+|+++.+..... . ..++...+.+. +.+ .+++++.+ ++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~----------~-d~e~~~~l~~~---L~~-~GI~i~~~~~V 234 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG----------E-DEDIAHILREK---LEN-DGVKIFTGAAL 234 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc----------c-cHHHHHHHHHH---HHH-CCCEEEECCEE
Confidence 468999999999999999999999999999998753210 0 01111222222 332 57777664 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.+.+.+... + +..+++||.|++|+|..|+..
T Consensus 235 ~~i~~~~~~v~~~~~--g------~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 235 KGLNSYKKQALFEYE--G------SIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEEEEcCCEEEEEEC--C------ceEEEEeCEEEEecCCccCCC
Confidence 888877666655431 1 124799999999999998764
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.8e-07 Score=79.27 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=35.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
..||+||||||+||+||++|++.|++|+|||++.++...
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG 68 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGG 68 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCc
Confidence 358999999999999999999999999999999887654
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-06 Score=84.53 Aligned_cols=95 Identities=27% Similarity=0.463 Sum_probs=74.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cC-CCC---------CHHHHHHHHHHHHhCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--IL-SSF---------DDRLRHYATTQLSKSG 298 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l-~~~---------~~~~~~~~~~~l~~~g 298 (499)
++|||||||+.|+.+|..|.... ++.+||+|++.. ++ |.+ ..++...+.+.+++.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~------------~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~ 71 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKL------------PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG 71 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcC------------CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC
Confidence 48999999999999999887531 137899999863 22 211 2345556677787565
Q ss_pred -CEEEeCceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcch
Q 010845 299 -VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 299 -V~v~~~~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~~ 337 (499)
|+++.++|++|+.+ .|+++++.++++|.+|+++|..++.
T Consensus 72 ~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 72 NVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred ceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence 99999999999764 7999998899999999999999984
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.4e-06 Score=86.28 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+||++.+.+.- . . ...+...+.+. +. ..+++++.+ +|
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~--~--------~-~~~~~~~l~~~---l~-~~gI~i~~~~~v 244 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP--T--------E-DAELSKEVARL---LK-KLGVRVVTGAKV 244 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC--c--------C-CHHHHHHHHHH---HH-hcCCEEEeCcEE
Confidence 46999999999999999999999999999999875310 0 0 11111222222 22 257777654 78
Q ss_pred EEEEC--CCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDT--DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~--~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++. +++...+.. .++ +..+++||.||+|+|..|+..
T Consensus 245 ~~i~~~~~~~~~~~~~-~~g------~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 245 LGLTLKKDGGVLIVAE-HNG------EEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred EEEEEecCCCEEEEEE-eCC------ceEEEEeCEEEEeeCCccCCC
Confidence 88874 343322221 112 124799999999999998764
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=78.65 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCCc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHM 97 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~~ 97 (499)
....+|+|||||++|+++|+.|++. |++|+|||++...
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 3457999999999999999999975 8999999998654
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-06 Score=86.43 Aligned_cols=102 Identities=14% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+.+.- .+ + .++...+.+. +.. .+++++.+ +|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--~~--------~-~~~~~~~~~~---l~~-~gi~i~~~~~v 234 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--GE--------D-AEVSKVVAKA---LKK-KGVKILTNTKV 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--CC--------C-HHHHHHHHHH---HHH-cCCEEEeCCEE
Confidence 46899999999999999999999999999999875321 00 0 1111112221 222 46777664 88
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+++.+.+...+ + +..++++|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~v~~~~-g------~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 235 TAVEKNDDQVVYENKG-G------ETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEeCCEEEEEEeC-C------cEEEEEeCEEEEecCCcccCC
Confidence 8888766666554321 1 124799999999999998765
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-06 Score=85.07 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3689999999999999999999999999999875
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.6e-06 Score=85.96 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=70.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. .+ .++...+.+. +. ..++.++.+ +|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~~-~~~~~~l~~~---l~-~~gV~i~~~~~V 236 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------ED-KEISKLAERA---LK-KRGIKIKTGAKA 236 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc----------CC-HHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence 368999999999999999999999999999998764210 00 1111222222 22 256777664 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.++.+.+.+.+...+++ +..++++|.||+|+|..|+...
T Consensus 237 ~~i~~~~~~v~v~~~~gg------~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 237 KKVEQTDDGVTVTLEDGG------KEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEeCCEEEEEEEeCC------eeEEEEeCEEEEeeCCccCCCC
Confidence 888876655554432111 1247999999999999987643
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-06 Score=64.75 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=29.1
Q ss_pred EECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 67 IIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
|||||++||++|..|++.|++|+|+|+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999998754
|
... |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.8e-06 Score=84.66 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCC---CCeEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~---g~~V~lie~~ 94 (499)
.+.+|+|||||+||+++|..|++. |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 457999999999999999999998 9999999994
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.6e-05 Score=80.93 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
.+++|+|||||++||++|..|++.|++|+|+|+.+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 45699999999999999999999999999999988654
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.8e-06 Score=83.44 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=32.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 47899999999999999999999999999999864
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-06 Score=65.29 Aligned_cols=71 Identities=20% Similarity=0.363 Sum_probs=49.8
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEEEE
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAG 142 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 142 (499)
+|+|||||+.|+.+|..|++.|.+|+||++++.+. +.+. .+....+.+. +.+ .+++++. ..+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~~---------~~~~~~~~~~---l~~-~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PGFD---------PDAAKILEEY---LRK-RGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTSS---------HHHHHHHHHH---HHH-TTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hhcC---------HHHHHHHHHH---HHH-CCCEEEeCCEEEE
Confidence 68999999999999999999999999999998754 1111 1111222222 333 5787766 58888
Q ss_pred EECCCCE
Q 010845 143 IDTDNHV 149 (499)
Q Consensus 143 id~~~~~ 149 (499)
++.+...
T Consensus 66 i~~~~~~ 72 (80)
T PF00070_consen 66 IEKDGDG 72 (80)
T ss_dssp EEEETTS
T ss_pred EEEeCCE
Confidence 8876654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.8e-06 Score=84.02 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=70.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------CC----------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD---------------------- 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------~~---------------------- 283 (499)
.|+|||||+.|+.+|..+++++ .+|+|++++.+-.. .|
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 69 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHG--------------AKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGW 69 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCc
Confidence 6999999999999999999988 89999987422110 00
Q ss_pred --------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE-CCCcEEeeeEEEEcCCCCcc
Q 010845 284 --------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 --------------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~-~~g~~i~~D~vi~a~G~~p~ 336 (499)
.++.+.+.+.+++.||+++.+++..++.+.+.+ .+|+++.+|.+|+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 70 TVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCC
Confidence 023334455677889999998888888776655 46778999999999999986
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.4e-05 Score=82.44 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH-hCCCEEEeC-ceEEEeC---Ce--EE---ECCCc--EEeeeEEEEcCCCCcchhcccCCCC
Q 010845 284 DRLRHYATTQLS-KSGVRLVRG-IVKDVDS---QK--LI---LNDGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 284 ~~~~~~~~~~l~-~~gV~v~~~-~v~~v~~---~~--v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
..+.+.+.+.+. ..|++++.+ +|.+++. +. +. +.+++ ++.+|.||+|+|.....+++.+|++
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 456667767775 459999998 8888753 22 33 23342 6899999999999998888877764
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.4e-06 Score=84.97 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 468999999999999999999999999999998653
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.6e-06 Score=81.96 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=32.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
|++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 468999999999999999999999999999988643
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=81.89 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-e--EEE---CCC--cEEeeeEEEEcCCCCcchhcccCCCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~-~--v~~---~~g--~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
+..+...+.+.+++.|++++.+ +|.+++. + . +.+ .+| .++.+|.||+|+|.....+.+.+|++
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 3577788888888899999999 8988864 2 2 332 223 36899999999999988887777765
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-05 Score=82.07 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35799999999999999999999999999999875
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=84.70 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=75.0
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---CcC------------CCCCHHHHHHHHHH
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL------------SSFDDRLRHYATTQ 293 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~l------------~~~~~~~~~~~~~~ 293 (499)
...+|+|||||+.|+.+|..+++.+ .+|++++.. ... ....+++.+.+.+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 276 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEH 276 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHH
Confidence 3468999999999999999999877 889888641 221 02345777888888
Q ss_pred HHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 294 LSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.||+++.+ +|.+++.+ .+.+++|+++.+|.+|+|+|..|.
T Consensus 277 l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 277 IKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred HHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 99999999988 88888643 466678889999999999999875
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.8e-06 Score=85.21 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 6899999999999999999999999999998754
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=79.97 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++|+|||||+||+++|..|++. ++|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 46899999999999999999999 99999998864
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.2e-06 Score=82.88 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 689999999999999999999999999999876
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=81.37 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=31.1
Q ss_pred cEEEECCchHHHHHHHhccCCC-CeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~ 96 (499)
+|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998854
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.6e-06 Score=83.90 Aligned_cols=90 Identities=27% Similarity=0.437 Sum_probs=69.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC------CCCH---------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD--------------------- 284 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------~~~~--------------------- 284 (499)
.|+|||||+.|+.+|..+++.+ .+|+++++..+-. ..|.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G--------------~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g 71 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYG--------------AKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYG 71 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcC
Confidence 6999999999999999999987 8999999753210 0000
Q ss_pred ----------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 ----------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ----------------------~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+...+.+++.||+++.+.+..++...|++ +|+++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 72 FDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPS 144 (450)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 01122334466789999999877888888888 7788999999999999986
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.8e-06 Score=83.94 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++|+|||||+||+++|..|++.|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999988653
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=81.25 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999998764
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.6e-06 Score=82.72 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
.++|+|||||++|+++|..|++.|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 478999999999999999999999999999986
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=81.09 Aligned_cols=100 Identities=20% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. .. .......+.+. +. ..++.++. .++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------~~-~~~~~~~l~~~---l~-~~gV~i~~~~~v 206 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------LM-PPEVSSRLQHR---LT-EMGVHLLLKSQL 206 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------hC-CHHHHHHHHHH---HH-hCCCEEEECCeE
Confidence 468999999999999999999999999999998763210 00 01111122222 22 25677764 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..++.+...+.+.. .++ .++++|.||+|+|..|+.
T Consensus 207 ~~i~~~~~~~~v~~-~~g--------~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 207 QGLEKTDSGIRATL-DSG--------RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEEEccCCEEEEEE-cCC--------cEEECCEEEECcCCCcch
Confidence 88887665544432 112 479999999999998864
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=83.36 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. .+ .++...+.+. +. ..+++++. .+|
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~d-~~~~~~~~~~---l~-~~gi~i~~~~~v 247 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA----------AD-EQVAKEAAKA---FT-KQGLDIHLGVKI 247 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc----------CC-HHHHHHHHHH---HH-HcCcEEEeCcEE
Confidence 469999999999999999999999999999998753210 01 1111122221 22 25777765 488
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+...+.+...+.+ ++..++++|.|++|+|..|+..
T Consensus 248 ~~i~~~~~~v~v~~~~~~-----g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 248 GEIKTGGKGVSVAYTDAD-----GEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred EEEEEcCCEEEEEEEeCC-----CceeEEEcCEEEEccCCccCCC
Confidence 888876655544321110 1224799999999999998865
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.6e-06 Score=84.23 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. .+ .++...+.+. +. ..+++++.+ +|
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~d-~~~~~~l~~~---l~-~~gV~i~~~~~V 230 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR----------EE-PEISAAVEEA---LA-EEGIEVVTSAQV 230 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc----------cC-HHHHHHHHHH---HH-HcCCEEEcCcEE
Confidence 368999999999999999999999999999998753210 01 1111222222 22 357777665 68
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.++.+++.+.+....++ ...++++|.+|+|+|..|+...
T Consensus 231 ~~i~~~~~~~~v~~~~~~------~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 231 KAVSVRGGGKIITVEKPG------GQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEEEEcCCEEEEEEEeCC------CceEEEeCEEEEeECCCcCCCC
Confidence 888765543333221111 1247999999999999987653
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.14 E-value=6e-05 Score=76.97 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC---C---eEEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS---Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
..+...+.+.+++.|++++.+ +|.+++. + .|.+.+| ++.+|.||+|+|.....+.+.++
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g 248 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAG 248 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcC
Confidence 455566677888999999998 8888852 2 2555566 69999998988877654444333
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=83.67 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. . ..++...+.+. + ...+++++. .+|
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------~-~~~~~~~l~~~---l-~~~GV~i~~~~~V 235 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR----------E-DEDVAAAVREI---L-EREGIDVRLNAEC 235 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc----------c-CHHHHHHHHHH---H-HhCCCEEEeCCEE
Confidence 478999999999999999999999999999998764211 0 01111222222 2 235777765 488
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+++.+.+.....+ ...++++|.||+|+|..|+..
T Consensus 236 ~~i~~~~~~~~v~~~~~~------~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 236 IRVERDGDGIAVGLDCNG------GAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEcCCEEEEEEEeCC------CceEEEeCEEEECcCCCcCCC
Confidence 888866544332211101 124799999999999998764
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0001 Score=65.78 Aligned_cols=158 Identities=17% Similarity=0.249 Sum_probs=95.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-------CC--------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FD-------------------- 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-------~~-------------------- 283 (499)
.|+|||+|++|+-+|.+|++.+ .+|.++++. .+-.. |+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 7999999999999999999876 899999986 32211 11
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----eEEEC-----------CCcEEeeeEEEEcCCCC
Q 010845 284 -----------DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~----~v~~~-----------~g~~i~~D~vi~a~G~~ 334 (499)
..+...+....-+.|++++.+ .|+++- ++ +|.++ |--.++++.||=+||..
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 111222222233456777766 555541 22 23332 22368999999999998
Q ss_pred cc--hh-cccC---CCCCCCC-------C-ceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHH
Q 010845 335 PS--TL-VKSL---DLPKSPG-------G-RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 400 (499)
Q Consensus 335 p~--~~-~~~~---~l~~~~~-------G-~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~ 400 (499)
.. .+ .+.. +..+... + .+.|+.+.++ +||+|++|=.++-.. |.+...++...=.-.|+.+|+
T Consensus 178 a~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~--G~pRMGPiFGgMllSGkkaAe 253 (262)
T COG1635 178 AEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVH--GLPRMGPIFGGMLLSGKKAAE 253 (262)
T ss_pred hHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhc--CCcccCchhhhhhhchHHHHH
Confidence 76 22 2222 2221110 1 1334444443 899999998765322 433444555555567999998
Q ss_pred HHHHHHH
Q 010845 401 LLNRIGK 407 (499)
Q Consensus 401 ~i~~~~~ 407 (499)
.+...++
T Consensus 254 ~i~e~L~ 260 (262)
T COG1635 254 EILEKLK 260 (262)
T ss_pred HHHHHhh
Confidence 8877664
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=83.01 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=75.1
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---Cc--------CC----CCCHHHHHHHHHHH
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATTQL 294 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~--------l~----~~~~~~~~~~~~~l 294 (499)
...|+|||||+.|+.+|.++++.+ .+|++++.. .. ++ ..+.++.+.+.+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 276 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHV 276 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999887 788888642 11 11 13457888889999
Q ss_pred HhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 295 SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.|++++.+ +|.+++.+ .+.+++|+++.+|.||+|+|..+.
T Consensus 277 ~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 277 KEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred HHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 9999999988 78888653 466678889999999999999875
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=80.74 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=31.3
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 599999999999999999999999999999864
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-05 Score=83.17 Aligned_cols=98 Identities=12% Similarity=0.240 Sum_probs=67.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|++|++.+...... .+ ..+...+.+. +. ..+++++. .++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~---------~~-~~~~~~~~~~---l~-~~gV~v~~~~~v 202 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL---------FD-EEMNQIVEEE---LK-KHEINLRLNEEV 202 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc---------cC-HHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence 4689999999999999999999999999999887532110 00 1111222222 22 25677764 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..++.+...+.+.+ + .+++||.||+|+|..|+.
T Consensus 203 ~~i~~~~~~v~~~~---g--------~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 203 DSIEGEERVKVFTS---G--------GVYQADMVILATGIKPNS 235 (427)
T ss_pred EEEecCCCEEEEcC---C--------CEEEeCEEEECCCccCCH
Confidence 88987665433322 2 379999999999998765
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=82.51 Aligned_cols=93 Identities=12% Similarity=0.197 Sum_probs=65.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc---CC-CCCHHH-------HHHH----HHHHHh
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LS-SFDDRL-------RHYA----TTQLSK 296 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~---l~-~~~~~~-------~~~~----~~~l~~ 296 (499)
+|+|||||+.|+.+|..|++.. ++.+|+++++.+. .+ .++.-+ .+.+ .+..++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~------------~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 70 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD------------KESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDR 70 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC------------CCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHh
Confidence 8999999999999999997642 2379999998732 11 111111 1111 223356
Q ss_pred CCCEEEeC-ceEEEeCC--eEEECCC---c--EEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDSQ--KLILNDG---T--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~--~v~~~~g---~--~i~~D~vi~a~G~~p~ 336 (499)
.||+++.+ +|.+|+.+ .|.+.++ + ++++|.+|+|||.+|.
T Consensus 71 ~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 71 KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 79999987 89999864 5666543 2 4789999999999986
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=82.48 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=68.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ .++...+.++ .. .++.++. .++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~--~--------~d-~~~~~~l~~l----~~-~~v~i~~~~~v 229 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR--H--------LD-DDISERFTEL----AS-KRWDVRLGRNV 229 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc--c--------cC-HHHHHHHHHH----Hh-cCeEEEeCCEE
Confidence 46899999999999999999999999999999876420 0 11 1111122222 12 3566654 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.++.+++.+.+... ++ .++++|.|++|+|..|+...
T Consensus 230 ~~i~~~~~~v~v~~~-~g--------~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 230 VGVSQDGSGVTLRLD-DG--------STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEEEEcCCEEEEEEC-CC--------cEeecCEEEEEECCccCccc
Confidence 888766555544331 12 37999999999999988653
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.9e-06 Score=83.30 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~ 96 (499)
+++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 368999999999999999999985 99999999754
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=88.13 Aligned_cols=93 Identities=22% Similarity=0.374 Sum_probs=70.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----CCCH---------HHHHHHHHHHHhCCC
Q 010845 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFDD---------RLRHYATTQLSKSGV 299 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----~~~~---------~~~~~~~~~l~~~gV 299 (499)
|||||+|+.|+.+|..|.... +.+.+||++++.+.++ .++. ++.....+.+++.||
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~-----------~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN-----------RHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC-----------CCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCC
Confidence 589999999999999987643 1236999999864322 1111 122223456788999
Q ss_pred EEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 300 RLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.+ +|.+++.+ .|++.+|+++++|.+|+|||..|.
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 99998 89998764 688888999999999999999886
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=84.17 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...+|+|||||++||++|..|++.|++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 357899999999999999999999999999998754
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-05 Score=86.48 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=71.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----CCC--------HHHHHHHHHHHHhCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD--------DRLRHYATTQLSKSG 298 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----~~~--------~~~~~~~~~~l~~~g 298 (499)
++|+|||+|+.|+.+|..|.+... .++.+||++++.+.++ .++ +++.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 389999999999999999875420 1237999998764322 111 122222345677889
Q ss_pred CEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+ .|.+++.+ .|.+.+|+++.+|.+|+|||..|.
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC
Confidence 999998 79888764 577788889999999999999886
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.3e-06 Score=82.23 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+.+|+|||||++|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999998
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-05 Score=82.41 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 445799999999999999999999999999999874
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=83.70 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 457999999999999999999999999999998864
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=84.43 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+.+|+|||||++||++|..|++.|++|+|||+++..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4579999999999999999999999999999998643
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=80.65 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=32.1
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 37999999999999999999999999999988643
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.3e-05 Score=73.37 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=55.9
Q ss_pred CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCCcchhcc----cCCCCC
Q 010845 277 EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVK----SLDLPK 346 (499)
Q Consensus 277 ~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~----~~~l~~ 346 (499)
++-...-+++.+.+.+.+++.|++++.+ +|.+++- + .+.+++|.++++|.||+|+|.....|+. +.|+.+
T Consensus 166 HiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~ 245 (486)
T COG2509 166 HIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKM 245 (486)
T ss_pred ccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCccc
Confidence 3434445688888999999999999998 8987753 2 6788899999999999999999986543 446554
Q ss_pred CC
Q 010845 347 SP 348 (499)
Q Consensus 347 ~~ 348 (499)
..
T Consensus 246 ~~ 247 (486)
T COG2509 246 RA 247 (486)
T ss_pred cc
Confidence 43
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.1e-05 Score=81.84 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 47999999999999999999999999999998864
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=81.65 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- ..+ .++...+.+. +. ..++.++. .++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------~~d-~~~~~~l~~~---l~-~~gI~v~~~~~v 239 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS----------FLD-DEISDALSYH---LR-DSGVTIRHNEEV 239 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC----------cCC-HHHHHHHHHH---HH-HcCCEEEECCEE
Confidence 47899999999999999999999999999999875321 011 1111222222 22 25677765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.++..+.+.. .++ .++++|.|++|+|.+|+..
T Consensus 240 ~~i~~~~~~~~v~~-~~g--------~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 240 EKVEGGDDGVIVHL-KSG--------KKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEeCCeEEEEE-CCC--------CEEEeCEEEEeecCCcccc
Confidence 88876555554432 112 3689999999999998764
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.9e-05 Score=80.68 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+...-. .+ .++...+.+. +.. .+++++. .+|
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~----------~d-~~~~~~l~~~---l~~-~gV~i~~~~~v 236 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN----------ED-AEVSKEIAKQ---YKK-LGVKILTGTKV 236 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc----------cC-HHHHHHHHHH---HHH-CCCEEEECCEE
Confidence 468999999999999999999999999999987653210 00 1111122222 222 5777765 488
Q ss_pred EEEECCCCEEEEeee-cCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~-~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.+.+.+... .++ +..++++|.||+|+|..|+..
T Consensus 237 ~~i~~~~~~~~v~~~~~~g------~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 237 ESIDDNGSKVTVTVSKKDG------KAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEeCCeEEEEEEecCC------CeEEEEeCEEEECcCcccCCC
Confidence 888766554433211 112 124799999999999998764
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.8e-05 Score=71.03 Aligned_cols=88 Identities=24% Similarity=0.369 Sum_probs=60.1
Q ss_pred EEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCC-CcC--------------CC----------C-----
Q 010845 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL--------------SS----------F----- 282 (499)
Q Consensus 234 vVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~-~~l--------------~~----------~----- 282 (499)
+|||||++|+-+|..|.+.+ .+ |+++++. .+. |. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999999876 45 7888765 221 00 0
Q ss_pred --------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCc
Q 010845 283 --------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 283 --------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+++.+++.+..++.+++++.+ +|++++.+ .|++++++++.||.||+|+|...
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSC
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccC
Confidence 1245677788888999998888 88888654 47888888899999999999743
|
... |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.4e-05 Score=80.05 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|||||||.|||+||..+++.|.+|+|||+..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3799999999999999999999999999999864
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.4e-05 Score=79.73 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=67.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ .++...+.++ + . .++.++. .+|
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~--~--------~d-~~~~~~l~~~---~-~-~gI~i~~~~~V 232 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR--H--------LD-EDISDRFTEI---A-K-KKWDIRLGRNV 232 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc--c--------cC-HHHHHHHHHH---H-h-cCCEEEeCCEE
Confidence 46899999999999999999999999999999875321 0 11 1111222222 1 2 3566654 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+++.+.+... ++ .++++|.|++|+|..|+..
T Consensus 233 ~~i~~~~~~v~v~~~-~g--------~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 233 TAVEQDGDGVTLTLD-DG--------STVTADVLLVATGRVPNGD 268 (452)
T ss_pred EEEEEcCCeEEEEEc-CC--------CEEEcCEEEEeeccCcCCC
Confidence 888766555544431 12 3799999999999998764
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.4e-05 Score=80.06 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|||+.+...- + .+ .++...+.+. +.. .+++++.+ ++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~---------~-~d-~~~~~~l~~~---l~~-~gV~i~~~~~V 238 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP---------G-TD-TETAKTLQKA---LTK-QGMKFKLGSKV 238 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC---------C-CC-HHHHHHHHHH---HHh-cCCEEEECcEE
Confidence 47899999999999999999999999999998775321 0 11 1111222222 222 57777654 78
Q ss_pred EEEECCCCEEEE--eeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~--~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.+..+...+.+ ....++ +..++++|.|++|+|..|+..
T Consensus 239 ~~i~~~~~~v~v~~~~~~~g------~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 239 TGATAGADGVSLTLEPAAGG------AAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEEEcCCeEEEEEEEcCCC------ceeEEEeCEEEEccCCccccc
Confidence 888765444433 221111 134799999999999998754
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.7e-05 Score=85.89 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=67.4
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CCC--CCHHHHHHHHHHHHhC
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LSS--FDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~~--~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||||+.|+.+|..|++.+ .+|+++++.+ + .|. ++.+....-.+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 45679999999999999999999877 8999999753 2 122 2445555666778889
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
||+++.+ .+ . +.+++.....+|.||+|||..+.
T Consensus 603 GVe~~~gt~V-d-----i~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 603 GVKFEFGCSP-D-----LTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred CCEEEeCcee-E-----EEhhhheeccCCEEEECcCCCCC
Confidence 9999998 45 2 23334445669999999999864
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-06 Score=75.30 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..||+||||||+||+||++|++.|++|+|||++.....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 47999999999999999999999999999999876543
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.2e-05 Score=80.42 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++...+. . .+ .++...+.+. +. ..+++++.+ ++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~------~-----~~-~~~~~~l~~~---l~-~~GI~v~~~~~v 241 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS------Q-----ED-PAVGEAIEAA---FR-REGIEVLKQTQA 241 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC------C-----CC-HHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 4689999999999999999999999999998743211 0 01 1112222222 22 357887764 88
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.++..+.+.. . + .++++|.||+|+|..|+..
T Consensus 242 ~~i~~~~~~~~v~~-~-~--------~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 242 SEVDYNGREFILET-N-A--------GTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred EEEEEcCCEEEEEE-C-C--------CEEEeCEEEEccCCCCCcC
Confidence 88887666555443 1 1 2699999999999998764
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-05 Score=75.93 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.++.+.+.+.+++.|++++.+ +|.+++.+ .+.+++|+++.+|.||.|.|..+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 356667777778889999998 88888643 466788999999999999999875
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.5e-05 Score=79.53 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+|||||+|||++|..|++.|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998864
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.6e-05 Score=80.34 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||||+||+.+|..+++.|.+|+|||++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 479999999999999999999999999999874
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=80.75 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+...- ..+ .++...+.+. +. ..+++++.+ +|
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~----------~~d-~~~~~~l~~~---l~-~~GI~i~~~~~V 267 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR----------GFD-DEMRAVVARN---LE-GRGINLHPRTNL 267 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc----------ccC-HHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 46899999999999999999999999999998764210 001 1111222222 22 256777664 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+.+.+.+... ++ .++++|.+++|+|..|+..
T Consensus 268 ~~i~~~~~~~~v~~~-~g--------~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 268 TQLTKTEGGIKVITD-HG--------EEFVADVVLFATGRAPNTK 303 (499)
T ss_pred EEEEEeCCeEEEEEC-CC--------cEEEcCEEEEeecCCCCCC
Confidence 888755444544431 12 3799999999999998764
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.8e-05 Score=78.03 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=30.0
Q ss_pred cEEEECCchHHHHHHHhccCC--CCeEEEEcCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~ 95 (499)
+|+|||||+||+++|..|++. |++|+|+|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 699999999999999999986 99999999986
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=1e-05 Score=81.35 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=31.2
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|+|||||.+|+.+|..|++.|++|+|||+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 799999999999999999999999999998765
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-05 Score=79.80 Aligned_cols=103 Identities=13% Similarity=0.198 Sum_probs=66.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+...-. .+ .++...+.+. +.. . +.++. .++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~----------~d-~~~~~~~~~~---l~~-~-v~i~~~~~v 237 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA----------AD-KDIVKVFTKR---IKK-Q-FNIMLETKV 237 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc----------CC-HHHHHHHHHH---Hhh-c-eEEEcCCEE
Confidence 468999999999999999999999999999998753210 01 1111112221 222 2 55444 477
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.....+.+...+.+ ++..++++|.+|+|+|..|+..
T Consensus 238 ~~i~~~~~~~~v~~~~~~-----~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 238 TAVEAKEDGIYVTMEGKK-----APAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEEEEcCCEEEEEEEeCC-----CcceEEEeCEEEEeecccccCC
Confidence 777655444443321110 1124699999999999998864
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=87.80 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=69.8
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-------C--CCCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------S--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-------~--~~~~~~~~~~~~~l~~~g 298 (499)
+.++|+|||+|+.|+.+|..|++.+ .+||++++.+ +. | .++.++.+...+.+++.|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~G 370 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLG 370 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhc
Confidence 4689999999999999999999887 8999999753 21 2 235677777778899999
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCC
Q 010845 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
|+++++... +..+.+++.....+|.||+|||..
T Consensus 371 v~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 371 GRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred CeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCC
Confidence 999988322 233566665566799999999995
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.7e-05 Score=74.36 Aligned_cols=88 Identities=27% Similarity=0.427 Sum_probs=64.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cC-----CCC----------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-IL-----SSF---------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l-----~~~---------------------- 282 (499)
.|+|||||..|+|.|..+++.+ .+|.|+... + +. |.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 3899999999999999999988 788888432 2 21 111
Q ss_pred ---------------------------CHHHHHHHHHHHHh-CCCEEEeCceEEEeCC-----eEEECCCcEEeeeEEEE
Q 010845 283 ---------------------------DDRLRHYATTQLSK-SGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 283 ---------------------------~~~~~~~~~~~l~~-~gV~v~~~~v~~v~~~-----~v~~~~g~~i~~D~vi~ 329 (499)
...+.+.+.+.+++ .+++++.++|+++..+ +|.+.+|+++.+|.||+
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence 01355566677776 6899988888888542 78899999999999999
Q ss_pred cCCC
Q 010845 330 STGV 333 (499)
Q Consensus 330 a~G~ 333 (499)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9999
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.1e-06 Score=85.10 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
||||||||+||++||..+++.|.+|+|||+.+.+..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence 699999999999999999999999999999976543
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.5e-06 Score=84.46 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=36.9
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
..+++|+|||||.|||+||++|...|++|+|+|.++..+..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 45689999999999999999999999999999999876543
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.1e-05 Score=81.47 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=67.2
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-------CC--CCHHHHHHHHHHHHhC
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------SS--FDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-------~~--~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||||+.|+++|..|+..+ .+|+++++.+ +. |. .+.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 34569999999999999999998876 8999999863 31 22 3567777788889999
Q ss_pred CCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 298 gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
||+++.+... ...+.+++. .+.+|.||+|||...
T Consensus 204 gv~~~~~~~v---~~~v~~~~~-~~~~d~vvlAtGa~~ 237 (457)
T PRK11749 204 GVEIRTNTEV---GRDITLDEL-RAGYDAVFIGTGAGL 237 (457)
T ss_pred CCEEEeCCEE---CCccCHHHH-HhhCCEEEEccCCCC
Confidence 9999988322 122333333 378999999999863
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.9e-05 Score=79.17 Aligned_cols=99 Identities=21% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. . ...+...+.+. +. ..+++++. .++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--~---------~~~~~~~l~~~---l~-~~gV~v~~~~~v 222 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR--E---------DRDIADNIATI---LR-DQGVDIILNAHV 222 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC--c---------CHHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 468999999999999999999999999999997653210 0 01111222222 22 35777765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.++..+.+... + .++.+|.|++|+|..|+..
T Consensus 223 ~~i~~~~~~v~v~~~--~--------g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 223 ERISHHENQVQVHSE--H--------AQLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEcCCEEEEEEc--C--------CeEEeCEEEEeecCCcCCC
Confidence 888766655555431 1 2588999999999998764
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.2e-05 Score=79.41 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|++|++.+...-. .+ ..+...+.+. +. ..+++++.+ ++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~----------~d-~~~~~~l~~~---L~-~~gV~i~~~~~v 241 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG----------ED-ADAAEVLEEV---FA-RRGMTVLKRSRA 241 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC----------CC-HHHHHHHHHH---HH-HCCcEEEcCCEE
Confidence 368999999999999999999999999999987653211 00 1111122222 22 257777654 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+...+.+... ++ .++++|.|++|+|..|+..
T Consensus 242 ~~v~~~~~~~~v~~~-~g--------~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 242 ESVERTGDGVVVTLT-DG--------RTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred EEEEEeCCEEEEEEC-CC--------cEEEecEEEEeecCCcCCC
Confidence 888655454544321 12 3799999999999998865
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.5e-05 Score=73.24 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+...+. ....+.+ .+. ..++.++. ..+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~-------------~~~~~~~---~l~-~~gV~i~~~~~v 208 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKI-------------LIKRLMD---KVE-NGNIILHTNRTL 208 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHH-------------HHHHHHh---hcc-CCCeEEEeCCEE
Confidence 47999999999999999999999999999999875321110 1111111 122 35677765 578
Q ss_pred EEEECCCC---EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.. .+++.+..++ ++..++++|.||+|+|..|+..
T Consensus 209 ~~v~~~~~~~~~v~~~~~~~~-----~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 209 EEVTGDQMGVTGVRLRDTQNS-----DNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEEEcCCccEEEEEEEEcCCC-----CeEEEEECCEEEEEeCCccChh
Confidence 88876543 3444432111 1234799999999999988754
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.92 E-value=6e-05 Score=77.85 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=66.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------CCH---------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FDD--------------------- 284 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------~~~--------------------- 284 (499)
.|+|||+|+.|+..|..+++.+ .+|+++++..+-.. .|.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 69 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHG--------------AKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGF 69 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCc
Confidence 7999999999999999999987 89999997432110 000
Q ss_pred ----------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 ----------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ----------------------~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+...+++.||+++.+...-.+++.|.+ +++++.+|.||+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 70 YQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPS 142 (450)
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 11223445577789999998544445556666 5678999999999999986
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.3e-05 Score=78.79 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEE-EEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (499)
.++++|||+|+.|+.+|..|++.|++|+++|+.+....+... ......+.+. + ...+++++ ...+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~---l-~~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAEL---L-EKYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHH---H-HHCCcEEEeCCce
Confidence 479999999999999999999999999999999875433211 1112223332 2 23457764 4588
Q ss_pred EEEECCCCEEEEe--eecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010845 141 AGIDTDNHVVHCE--TVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 141 ~~id~~~~~v~~~--~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
..|+...+..... .... ...+++|.+++++|.+|+
T Consensus 202 ~~i~~~~~~~~~~~~~~~~--------~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 202 VGVEGKGNTLVVERVVGID--------GEEIKADLVIIGPGERPN 238 (415)
T ss_pred EEEEcccCcceeeEEEEeC--------CcEEEeeEEEEeeccccc
Confidence 8998876643321 1111 247999999999999985
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.5e-05 Score=78.86 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~ 97 (499)
.+|+|||||+|||++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999988 599999998654
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-05 Score=79.39 Aligned_cols=101 Identities=10% Similarity=0.173 Sum_probs=66.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .+ .++...+.+. +. ..+++++.+ ++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~~--------~d-~~i~~~l~~~---L~-~~GV~i~~~~~V 301 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--RK--------FD-ETIINELEND---MK-KNNINIITHANV 301 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--cc--------CC-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 5789999999999999999999999999999877532 10 01 1111222222 22 256776654 67
Q ss_pred EEEECCCC-EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.++. .+.+...+ + ..++++|.|++|+|..|+..
T Consensus 302 ~~I~~~~~~~v~v~~~~-~-------~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 302 EEIEKVKEKNLTIYLSD-G-------RKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEecCCCcEEEEECC-C-------CEEEECCEEEECcCCCCCcc
Confidence 77875432 23332111 1 24799999999999988754
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.1e-05 Score=77.73 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=66.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ .++...+.+. +.+ . ++++. .++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--~--------~d-~~~~~~~~~~---l~~-~-I~i~~~~~v 232 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP--L--------ED-PEVSKQAQKI---LSK-E-FKIKLGAKV 232 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc--c--------hh-HHHHHHHHHH---Hhh-c-cEEEcCCEE
Confidence 47899999999999999999999999999999875321 0 00 1111122221 332 3 66554 578
Q ss_pred EEEECCCC-EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+.+ .+++...+ + ++.++++|.+++|+|..|+..
T Consensus 233 ~~i~~~~~~~v~~~~~~-~------~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 233 TSVEKSGDEKVEELEKG-G------KTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred EEEEEcCCceEEEEEcC-C------ceEEEEeCEEEEccCCccCCC
Confidence 88875543 44442111 1 134799999999999998865
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=78.22 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=69.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC------------CC----CCHHHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQLS 295 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l------------~~----~~~~~~~~~~~~l~ 295 (499)
.|+|||||+.|+.+|..+++.+ .+|++++++++. |. .+..+.+.+.+.++
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~ 71 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQ 71 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHH
Confidence 7999999999999999998866 789999875321 11 12456677777888
Q ss_pred hCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.|++++.+.|..++.+ .+.+.++ ++.+|.+|+|||.+|.
T Consensus 72 ~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 72 DFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 88999976678777643 3444444 6899999999999886
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.1e-05 Score=75.94 Aligned_cols=91 Identities=25% Similarity=0.419 Sum_probs=66.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCC----------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSS---------------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~---------------------------- 281 (499)
.|+|||||++|.-+|..|++.+ .+|.++++.+ ..|.
T Consensus 30 DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 7999999999999999998755 6666666532 1110
Q ss_pred ----------------CCHHHHHHHHHHHHhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 282 ----------------FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 282 ----------------~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
...++.+.+.+.+.+.||+++..+|.+++.+ .|++++|+++.+|.||.|+|..+.
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0123445566666778999986678777642 477888989999999999998764
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00025 Score=67.24 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHhcC-CCC-CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe----CC---eEEECCCcEEe
Q 010845 255 RDVRQRYS-HVK-DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD----SQ---KLILNDGTEVP 323 (499)
Q Consensus 255 ~~~~~~~~-~~~-~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~----~~---~v~~~~g~~i~ 323 (499)
++++++|| +.+ ++..+-+++.. .+ ....+....++..+++.|+.++.+ ++..+. ++ .|.+++|..+.
T Consensus 123 eEvrk~fP~~~~l~d~~~G~~n~~gGv--i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~ 200 (399)
T KOG2820|consen 123 EEVRKRFPSNIPLPDGWQGVVNESGGV--INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYH 200 (399)
T ss_pred HHHHHhCCCCccCCcchhhcccccccE--eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeee
Confidence 45677888 322 22333344332 21 124567788889999999999988 666654 22 67888999999
Q ss_pred eeEEEEcCCCCcchhccc
Q 010845 324 YGLLVWSTGVGPSTLVKS 341 (499)
Q Consensus 324 ~D~vi~a~G~~p~~~~~~ 341 (499)
++.+|+++|.+-+.++..
T Consensus 201 akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 201 AKKIIFTVGAWINKLLPT 218 (399)
T ss_pred cceEEEEecHHHHhhcCc
Confidence 999999999999877663
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00031 Score=72.48 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=65.0
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC-----------------------------
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------------------------- 279 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l----------------------------- 279 (499)
.++|+|||||++|+-+|.+|.+.+ .+|++++++ .+-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~ 75 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYE 75 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhh
Confidence 469999999999999999998765 566666643 110
Q ss_pred ----------------CC-------------C--CHHHHHHHHHHHHhCCCE--EEeC-ceEEEeCC----eEEECCC--
Q 010845 280 ----------------SS-------------F--DDRLRHYATTQLSKSGVR--LVRG-IVKDVDSQ----KLILNDG-- 319 (499)
Q Consensus 280 ----------------~~-------------~--~~~~~~~~~~~l~~~gV~--v~~~-~v~~v~~~----~v~~~~g-- 319 (499)
|. + ..++.+++++..+..|++ +..+ +|.+++.. .|.+.++
T Consensus 76 ~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~ 155 (461)
T PLN02172 76 SLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG 155 (461)
T ss_pred hhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC
Confidence 00 0 135777788888888988 7777 88888753 3444432
Q ss_pred c--EEeeeEEEEcCCC--Ccc
Q 010845 320 T--EVPYGLLVWSTGV--GPS 336 (499)
Q Consensus 320 ~--~i~~D~vi~a~G~--~p~ 336 (499)
. +..+|.||+|+|. .|+
T Consensus 156 ~~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 156 FSKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred ceEEEEcCEEEEeccCCCCCc
Confidence 2 4579999999994 454
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.3e-05 Score=79.88 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=31.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
++|+|||||+||+++|..|++.|++|+|||+++...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 589999999999999999999999999999987643
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.5e-05 Score=80.22 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=35.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
+||+|+|||.|||+||++|+++|++|||+|.+++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 58999999999999999999999999999999886654
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.1e-05 Score=79.00 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=67.0
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CC--CCCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LS--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+++|..|++.+ .+|+++++.+ + +| .++.++.....+.+++.|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~g 197 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCC
Confidence 4569999999999999999998876 8999999752 2 12 245677777777889999
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCC-Ccc
Q 010845 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 336 (499)
|+++.+... ...+.+++. ...+|.||+|||. .|.
T Consensus 198 v~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 198 VTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred cEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 999988422 223444333 3469999999997 454
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.4e-05 Score=77.08 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.. .... . + ..+...+.+. +. ..++.++. .++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~~--~--------d-~~~~~~l~~~---L~-~~GV~i~~~~~V 251 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLFR--E--------D-PLLGETLTAC---FE-KEGIEVLNNTQA 251 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCCc--c--------h-HHHHHHHHHH---HH-hCCCEEEcCcEE
Confidence 3689999999999999999999999999998743 1110 0 0 1111222222 22 35677765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+...+.+... + .++.+|.+|+|+|..|+..
T Consensus 252 ~~i~~~~~~~~v~~~--~--------g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 252 SLVEHDDNGFVLTTG--H--------GELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEEEEeCCEEEEEEc--C--------CeEEeCEEEEccCCCCCcc
Confidence 888765555554431 1 2689999999999998764
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2e-05 Score=79.23 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc-c---cccchhhhhccCC--------------------CC----
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-V---FTPLLASTCVGTL--------------------EF---- 113 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~-~---~~~~~~~~~~g~~--------------------~~---- 113 (499)
.++|+|||||.||+.||...++.|+++.|+.-+... . -.|...+...|.+ .+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 489999999999999999999999999998765322 1 1122222222110 00
Q ss_pred -------Cccc-----cchh-hhccccccCCCeEEEEEEEEEEECCCCE-EEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 114 -------RSVA-----EPIA-RIQPAISREPGSYFFLSHCAGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 114 -------~~~~-----~~~~-~~~~~~~~~~~~~~~~~~v~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+... ..++ .+...+...++..++++.|+++..++.. |.-.....| ..+.++.||++||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G--------~~~~a~aVVlTTG 155 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG--------PEFHAKAVVLTTG 155 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCC--------CeeecCEEEEeec
Confidence 0000 0011 1122355667888899999998875442 332222223 5899999999999
Q ss_pred CC
Q 010845 180 AE 181 (499)
Q Consensus 180 ~~ 181 (499)
+-
T Consensus 156 TF 157 (621)
T COG0445 156 TF 157 (621)
T ss_pred cc
Confidence 74
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.7e-05 Score=79.10 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=66.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++...+ .. .+ .++...+.+. +. ..++.++. .++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l------~~-----~d-~~~~~~l~~~---l~-~~gI~i~~~~~v 333 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF------FR-----ED-PAIGEAVTAA---FR-AEGIEVLEHTQA 333 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc------cc-----cC-HHHHHHHHHH---HH-HCCCEEEcCCEE
Confidence 468999999999999999999999999999985321 00 00 1111222222 22 25677764 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.++..+.+... + .++.+|.+++|+|..|+..
T Consensus 334 ~~i~~~~~~~~v~~~--~--------~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 334 SQVAHVDGEFVLTTG--H--------GELRADKLLVATGRAPNTR 368 (561)
T ss_pred EEEEecCCEEEEEec--C--------CeEEeCEEEEccCCCcCCC
Confidence 888765555554431 1 2689999999999998864
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.6e-05 Score=72.44 Aligned_cols=91 Identities=29% Similarity=0.442 Sum_probs=63.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC----CCCCH-----------HHH--H--HHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT 292 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l----~~~~~-----------~~~--~--~~~~ 292 (499)
+|+|||||+.|+.+|..|++.+ .+|++++..... ..++. ... . .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999655 899999764211 11110 011 1 3344
Q ss_pred HHHhCCCEEEeC-ceEEEeCC--eE----------EECCCcEEeeeEEEEcCCCCcc
Q 010845 293 QLSKSGVRLVRG-IVKDVDSQ--KL----------ILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~--~v----------~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+...+++++.+ ++.+++.. .+ ...++.++.+|.+|+|+|..|.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 456789999776 78777643 11 1234568999999999998876
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.2e-05 Score=81.82 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
..+.+.+.+.+++.|++|+++ +|++|..+ ++...+|+.+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 468888899999999999999 89998642 455566668999999998876
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.3e-05 Score=78.43 Aligned_cols=92 Identities=21% Similarity=0.384 Sum_probs=66.2
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c---C----CC--CCH-HHHHHHHHHHHh
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----SS--FDD-RLRHYATTQLSK 296 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~---l----~~--~~~-~~~~~~~~~l~~ 296 (499)
...++|+|||+|+.|+.+|..|++.+ .+|+++++.+ + + |. ++. ++.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 45679999999999999999999877 8999999753 1 1 21 222 366666778889
Q ss_pred CCCEEEeCceEEEeCCeEEECCC-cEEeeeEEEEcCCC-Ccc
Q 010845 297 SGVRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS 336 (499)
Q Consensus 297 ~gV~v~~~~v~~v~~~~v~~~~g-~~i~~D~vi~a~G~-~p~ 336 (499)
.||+++.+... ...+.+++. +++.+|.||+|||. .|.
T Consensus 204 ~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 204 LGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred cCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 99999988422 122333332 34679999999998 454
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0017 Score=63.51 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=93.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC----------------------------CC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------FD 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~----------------------------~~ 283 (499)
.|+|||+|++|+-+|..+++.. +.+|+++++...... ++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~-------------g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNP-------------NVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcC-------------CCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 8999999999999999998531 168888887521100 00
Q ss_pred -----------HHHHHHHHH-HHHhCCCEEEeC-ceEEEeC--C---eEEE------CC--C------cEEeeeEEEEcC
Q 010845 284 -----------DRLRHYATT-QLSKSGVRLVRG-IVKDVDS--Q---KLIL------ND--G------TEVPYGLLVWST 331 (499)
Q Consensus 284 -----------~~~~~~~~~-~l~~~gV~v~~~-~v~~v~~--~---~v~~------~~--g------~~i~~D~vi~a~ 331 (499)
..+...+.+ .+++.||+++.+ .+.++.. + ++.+ .+ + ..+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 011112232 334578999888 6666532 2 3442 11 1 268999999999
Q ss_pred CCCcc---hhcc---cCCCCC----------CCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHH
Q 010845 332 GVGPS---TLVK---SLDLPK----------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 395 (499)
Q Consensus 332 G~~p~---~~~~---~~~l~~----------~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g 395 (499)
|..+. ...+ ++++.. +..-...|+.+-++ +|++|++|=.+.-.+ |.+...++...=.-.|
T Consensus 241 Gh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~--g~~rmgp~fg~m~~sg 316 (357)
T PLN02661 241 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEID--GSPRMGPTFGAMMISG 316 (357)
T ss_pred CCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhc--CCCccCchhHhHHhhh
Confidence 97663 1111 122210 00001222333333 899999998765322 4444555555556789
Q ss_pred HHHHHHHHHHHH
Q 010845 396 KYLFSLLNRIGK 407 (499)
Q Consensus 396 ~~aa~~i~~~~~ 407 (499)
+.+|+.|...++
T Consensus 317 ~k~a~~~~~~l~ 328 (357)
T PLN02661 317 QKAAHLALKALG 328 (357)
T ss_pred HHHHHHHHHHHc
Confidence 999999988875
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=77.28 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=67.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- ..+. ++...+.+. +....++.++.. .|
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~----------~~d~-eis~~l~~~---ll~~~GV~I~~~~~V 377 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP----------LLDA-DVAKYFERV---FLKSKPVRVHLNTLI 377 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc----------cCCH-HHHHHHHHH---HhhcCCcEEEcCCEE
Confidence 46899999999999999999999999999999876321 0111 111112221 212356776654 78
Q ss_pred EEEECCCC--EEEEeeecC--ccc-c---CCCceeeeeCCeEEEcCCCCccCCC
Q 010845 141 AGIDTDNH--VVHCETVTD--ELR-T---LEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~--~v~~~~~~~--~~~-~---~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
..|+..+. .+.+..... +.. . ...+..++++|.|++|+|..|+...
T Consensus 378 ~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 378 EYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 88875542 244432110 000 0 0001237999999999999988643
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.2e-05 Score=78.11 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=62.2
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---------CCC--CHHHHHHHHHHHHhC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSF--DDRLRHYATTQLSKS 297 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---------~~~--~~~~~~~~~~~l~~~ 297 (499)
..++|+|||+|+.|+.+|..|+... .+.+|+++++.+.. |.. ...+...+.+.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 3468999999999999999997621 12899999986422 111 123444556667778
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+|+++.+ .+ +..+.+++-. ..+|.||+|+|..+.
T Consensus 93 ~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 93 RVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred CeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence 9998887 44 1223443332 369999999999864
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=73.68 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=63.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCC------CCHHHHHHHH------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRHYAT------------ 291 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~------~~~~~~~~~~------------ 291 (499)
.+|+|||||++|+.+|..|++.+ .+|+++++.+ ..+. +.+...+.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 48999999999999999999876 7888888752 2221 1222212111
Q ss_pred -------------------------------HHHHh--CCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 292 -------------------------------TQLSK--SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 292 -------------------------------~~l~~--~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
+.|.+ .+++++.+ +|++++.+ .+++++|+++.+|+||.|-|.
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 11111 13557777 78877543 367789999999999999998
Q ss_pred Ccc
Q 010845 334 GPS 336 (499)
Q Consensus 334 ~p~ 336 (499)
...
T Consensus 153 ~S~ 155 (386)
T PRK07236 153 RST 155 (386)
T ss_pred Cch
Confidence 775
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=76.18 Aligned_cols=99 Identities=14% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++... .. .+ + .++...+.+. +. ..+++++.+ .+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~--l~-~~--------d-~~~~~~l~~~---l~-~~GV~i~~~~~v 245 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP--LR-GF--------D-RQCSEKVVEY---MK-EQGTLFLEGVVP 245 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc--cc-cC--------C-HHHHHHHHHH---HH-HcCCEEEcCCeE
Confidence 35899999999999999999999999999986421 11 11 0 1111222222 22 256777654 55
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..+......+.+.. .++ .++.+|.|++|+|..|+..
T Consensus 246 ~~v~~~~~~~~v~~-~~g--------~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 246 INIEKMDDKIKVLF-SDG--------TTELFDTVLYATGRKPDIK 281 (499)
T ss_pred EEEEEcCCeEEEEE-CCC--------CEEEcCEEEEeeCCCCCcc
Confidence 66654333333322 112 3689999999999998764
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=72.25 Aligned_cols=92 Identities=23% Similarity=0.319 Sum_probs=63.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC---------CCCHHHHH--------------
Q 010845 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS---------SFDDRLRH-------------- 288 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~---------~~~~~~~~-------------- 288 (499)
|+|||||+.|+.+|..|++. +++.+|.++++.+ +.+ ..++....
T Consensus 2 viIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYE 69 (370)
T ss_pred EEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCE
Confidence 89999999999999999864 1227899998763 222 11111100
Q ss_pred --------------------HHHHH-HHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 289 --------------------YATTQ-LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 289 --------------------~~~~~-l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+. +++.+..++.+ +|.++++++|++++|+++.+|.||.|.|..+.
T Consensus 70 v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 70 VRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred EECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCC
Confidence 11112 22223446666 89999888999999999999999999998875
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.6e-05 Score=75.02 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=61.9
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC---------CCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~---------~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+++|..|++.+ .+|+++++. .+... .+.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 3469999999999999999998766 899999986 33211 22333344455677779
Q ss_pred CEEEeC-ceEEEeC------CeEE--E--CCCcEEeeeEEEEcCCCC
Q 010845 299 VRLVRG-IVKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 299 V~v~~~-~v~~v~~------~~v~--~--~~g~~i~~D~vi~a~G~~ 334 (499)
|+++.+ .+..++. +... . .++..+.+|.||+|||..
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 999988 5543321 1111 0 111247899999999984
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.8e-05 Score=81.20 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=36.5
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
+++++|+|||||++||+||+.|++.|++|+|+|++++.+..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 35678999999999999999999999999999999876543
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.5e-05 Score=80.91 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVF 99 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~ 99 (499)
++|+|||||+|||+||+.|++.| ++|+|+|++++.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 47999999999999999999977 89999999987654
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.9e-05 Score=80.02 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=34.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
++|+|||||.|||+||+.|.+.|++|+|+|++++.+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 47999999999999999999999999999999987654
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=75.67 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=63.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
..+++|||||+.|+.+|..|++.|.+|+|+++. ... +.+ + .++...+.+. +. ..+++++.+ .+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--~~~--------d-~~~~~~l~~~---L~-~~gV~i~~~~~v 243 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--RGF--------D-QDCANKVGEH---ME-EHGVKFKRQFVP 243 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc--ccc--------C-HHHHHHHHHH---HH-HcCCEEEeCceE
Confidence 358999999999999999999999999999873 211 100 0 1111222222 22 257777654 55
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++..+..+.+...+ +. +..++++|.+++|+|..|+..
T Consensus 244 ~~v~~~~~~~~v~~~~-~~-----~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 244 IKVEQIEAKVKVTFTD-ST-----NGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEEEEcCCeEEEEEec-CC-----cceEEEeCEEEEEecCCcCCC
Confidence 6665444333332211 10 013799999999999998764
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=72.16 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
..+||++|||+.|+.+|..|...+.+||+|++++...- .. -...+...+.. +....+++++.+ .+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-----~l-----f~~~i~~~~~~----y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-----RL-----FGPSIGQFYED----YYENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-----hh-----hhHHHHHHHHH----HHHhcCeEEEEecce
Confidence 46799999999999999999999999999999875321 10 01112222333 333478888776 45
Q ss_pred EEEECCC-CEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC
Q 010845 141 AGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (499)
Q Consensus 141 ~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip 188 (499)
.+++... +++.-....++ .++++|-||+.+|+.|+.....
T Consensus 279 s~l~~~~~Gev~~V~l~dg--------~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEVKLKDG--------KTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEEEeccC--------CEeccCeEEEeecccccccccc
Confidence 5565443 22222222223 5899999999999999876544
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00023 Score=75.08 Aligned_cols=90 Identities=26% Similarity=0.315 Sum_probs=69.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC----------CCcC---------C------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----------NEIL---------S------------ 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~----------~~~l---------~------------ 280 (499)
.|+|||+|+.|...|..+++++ .+|.++++ +.+- |
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~ 146 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFG--------------ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSH 146 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHH
Confidence 6999999999999999999988 89999994 1100 0
Q ss_pred ------CCC----------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCC
Q 010845 281 ------SFD----------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 281 ------~~~----------------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G 332 (499)
.++ .++.+.+.+.|++.||+++.+..+.++.+.|.+ +|+++.+|.||+|||
T Consensus 147 ~~~~~~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATG 225 (558)
T PLN02546 147 EFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVG 225 (558)
T ss_pred HHHhhhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCC
Confidence 000 012233445577889999999888888888877 677899999999999
Q ss_pred CCcc
Q 010845 333 VGPS 336 (499)
Q Consensus 333 ~~p~ 336 (499)
.+|.
T Consensus 226 s~p~ 229 (558)
T PLN02546 226 GRPF 229 (558)
T ss_pred CCCC
Confidence 9986
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00064 Score=64.51 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccC----CCCeEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~----~g~~V~lie~~~~~~ 98 (499)
.+.+|||||||-.|.+.|..|++ .|++|+|+|+++.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 46799999999999999999965 479999999987643
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.8e-05 Score=78.80 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 3579999999999999999999999999999988754
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.3e-05 Score=82.27 Aligned_cols=92 Identities=24% Similarity=0.454 Sum_probs=68.6
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c---C----C--CCCHHHHHHHHHHHHhC
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----S--SFDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~---l----~--~~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||||+.|+.+|..|++.+ .+|+++++.. + + | .++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 35679999999999999999999877 8999999742 1 1 2 23556666667788899
Q ss_pred CCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCC-cc
Q 010845 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (499)
Q Consensus 298 gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 336 (499)
||+++.+... ...+.+++..+..+|.||+|+|.. |.
T Consensus 495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999988322 233445444456799999999984 54
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00019 Score=73.03 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCC----CeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL----YDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g----~~V~lie~~~ 95 (499)
.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 479999999999999999999886 4799999874
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=81.02 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=64.9
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------CC--CCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~~--~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+ |. .+.+......+.+.+.|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~G 601 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHG 601 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcC
Confidence 4579999999999999999999877 899999975321 22 24455555567778889
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+.-.. +.+.+.+...+|.||+|||..+.
T Consensus 602 Ve~~~g~~~d-----~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 602 VEFKYGCSPD-----LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred cEEEEecccc-----eEhhhhhcccccEEEECCCCCCC
Confidence 9999872111 22333345679999999999864
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=75.91 Aligned_cols=87 Identities=23% Similarity=0.325 Sum_probs=64.5
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-------C--CCCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------S--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-------~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+++|..|++.+ .+|+++++.. +. | .++.++.....+.+++.|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEG 207 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCC
Confidence 4469999999999999999999876 7899998763 21 2 235566666778889999
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCC
Q 010845 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
|+++.+ .+. .+ +.. ++....+|.||+|+|..
T Consensus 208 v~~~~~~~v~-~~---~~~-~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 208 IDFVTNTEIG-VD---ISA-DELKEQFDAVVLAGGAT 239 (485)
T ss_pred CEEECCCEeC-Cc---cCH-HHHHhhCCEEEEccCCC
Confidence 999988 442 11 111 12235799999999998
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.3e-05 Score=83.66 Aligned_cols=89 Identities=20% Similarity=0.380 Sum_probs=66.4
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c---C----CC--CCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----SS--FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~---l----~~--~~~~~~~~~~~~l~~~g 298 (499)
+.++|+|||||+.|+.+|..|++.+ .+|+++++.+ + + |. .+.++.+...+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999887 8999999763 2 1 22 35677788888899999
Q ss_pred CEEEeCceEEEeCCeEEECCC-cEEeeeEEEEcCCCC
Q 010845 299 VRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGVG 334 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g-~~i~~D~vi~a~G~~ 334 (499)
|+++++.+.. ..+.+++- +...+|.||+|||..
T Consensus 495 v~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~ 528 (1006)
T PRK12775 495 VKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAG 528 (1006)
T ss_pred CEEEeCCccC---CccCHHHHhhccCCCEEEEecCCC
Confidence 9999984321 12222221 124689999999985
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=74.95 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=63.1
Q ss_pred CCcEEEECCchHHHHHHHhc---cCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGI---DTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L---~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
.++|+|||||+.|+.+|..+ .+.|.+|+||++.+...- ..+ .++...+.+. +. ..++.++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~----------~~d-~~~~~~l~~~---L~-~~GI~i~~~ 251 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR----------GFD-STLRKELTKQ---LR-ANGINIMTN 251 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc----------ccC-HHHHHHHHHH---HH-HcCCEEEcC
Confidence 47899999999999999655 445899999998875321 011 1122222222 32 256776654
Q ss_pred -EEEEEECCC-C--EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 139 -HCAGIDTDN-H--VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 139 -~v~~id~~~-~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
.++.++.+. . .+.+.+ + .++++|.+++|+|..|+..
T Consensus 252 ~~v~~i~~~~~~~~~v~~~~---g--------~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 252 ENPAKVTLNADGSKHVTFES---G--------KTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEEEEEcCCceEEEEEcC---C--------CEEEcCEEEEeeCCCcCcc
Confidence 677776532 2 233322 2 3799999999999998764
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00045 Score=72.00 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcccCCCCC
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (499)
.+.+.+.+.+++.||+++.+ ++++++. + .+++.+|+++.+|+||.|.|..+. .-+.+++..
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~-vR~~lgi~~ 166 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL-VRKAAGIDF 166 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC-cHhhcCCCC
Confidence 34445556677789999998 8888754 3 355567888999999999999874 333344433
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=70.69 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++++|||||+.||..+--..+.|.+||+||--+... +.++. ++...+.++ + ...++.|.. .+|
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~----------~~mD~-Eisk~~qr~---L-~kQgikF~l~tkv 275 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG----------GVMDG-EISKAFQRV---L-QKQGIKFKLGTKV 275 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc----------cccCH-HHHHHHHHH---H-HhcCceeEeccEE
Confidence 5789999999999999988889999999999765422 12222 223333333 2 236777766 488
Q ss_pred EEEECCCC-E--EEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNH-V--VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~-~--v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+.. . +.+++..+ ++..++++|.|.+|+|-+|..-
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~------~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKT------GKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred EEeeccCCCceEEEEEecCC------CceeEEEeeEEEEEccCccccc
Confidence 88887766 4 44444322 3467899999999999998764
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00039 Score=67.36 Aligned_cols=90 Identities=24% Similarity=0.381 Sum_probs=69.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCCc------------CC-----CCCHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LS-----SFDDRLRHYATTQ 293 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~~------------l~-----~~~~~~~~~~~~~ 293 (499)
.|+||||||.|+-.|.++.+.+ .+ +.+++.... .| ...+++.+.+.+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 7999999999999999998876 44 444443211 11 2356788888888
Q ss_pred HHhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 294 LSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+..|+++....|.+++.. .|.+++++ +.++.||+|||..+.
T Consensus 71 a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 71 AEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred HhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 8889999998878888765 35556666 999999999999886
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=76.11 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=66.1
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CC--CCCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LS--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+.+|..|+..+ .+|+++++.+ + +| .++.++.....+.+++.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 205 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG 205 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence 4579999999999999999998876 7899998763 2 12 235666667778889999
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+ .+.. .+.+++ ....+|.||+|+|..+.
T Consensus 206 v~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 206 IEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence 999988 4421 122222 23469999999999874
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00046 Score=70.03 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCCCC
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
.+.+.+.+.+++.|++++.+ +|++++.+ .+++++|+++.+|+||.|.|..+. +.+.++++
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~-vr~~~g~~ 178 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST-LRELAGLP 178 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch-HHHhhcCC
Confidence 44556666777889999988 88887543 356678889999999999999884 33344443
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.6e-05 Score=77.76 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...+|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 457999999999999999999999999999998753
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.3e-05 Score=77.48 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 6899999999999999999999999999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.5e-05 Score=78.50 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE--EECCCcEEeeeEEEEcCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v--~~~~g~~i~~D~vi~a~G~ 333 (499)
..+.+.+.+.+++.|++++.+ +|.+|+. +.+ ...+++++.+|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence 467778888888999999999 8988863 333 3456778999999999975
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0005 Score=66.57 Aligned_cols=91 Identities=24% Similarity=0.349 Sum_probs=66.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
.|+|||||++|+-+|..|++.+ .+|+++++.+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 5899999999999999998766 7788887652110
Q ss_pred --------------------CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe--EEECC-CcEEeeeEEEEcCCCC
Q 010845 281 --------------------SFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILND-GTEVPYGLLVWSTGVG 334 (499)
Q Consensus 281 --------------------~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~--v~~~~-g~~i~~D~vi~a~G~~ 334 (499)
-...++.+.+.+.+++.|++++.+ ++.++. ++. +.+++ +.++.+|.||.|+|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 002245667777788889999988 777754 343 33343 4689999999999987
Q ss_pred cc
Q 010845 335 PS 336 (499)
Q Consensus 335 p~ 336 (499)
..
T Consensus 148 s~ 149 (295)
T TIGR02032 148 SI 149 (295)
T ss_pred hH
Confidence 63
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.3e-05 Score=78.71 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCcEEEECCchHHHHHHHhccCC----CCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~----g~~V~lie~~~~~~~ 99 (499)
+++|+|||||++||+||+.|.+. |++|+|+|+++..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 46899999999999999999998 999999999987643
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.9e-05 Score=76.04 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+.+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 368999999999999999999999999999976
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.4e-05 Score=77.34 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+||+|||||++|+++|++|++.|++|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999864
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.2e-05 Score=78.97 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=35.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCCcccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~~~~~ 100 (499)
.+++|+|||||++||+||++|.+. |++|+|+|+++..+..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 356899999999999999999999 9999999999876543
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.9e-05 Score=77.16 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++|+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999998864
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.6e-05 Score=76.21 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 36899999999999999999999999999999864
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.7e-05 Score=77.99 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhccCC------CCeEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~------g~~V~lie~~~~~~~~ 100 (499)
|++|+|||||++||+||+.|.+. |++|+|+|++++.+..
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 36799999999999999999875 4799999999876544
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=7.1e-05 Score=74.92 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++|+|||||++|+.+|..|++.|++|+|||+++.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 36899999999999999999999999999998754
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=6.7e-05 Score=75.79 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=32.8
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~ 98 (499)
++|+|||||++||+||++|++.+ ++|+|+|++++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 47999999999999999999998 9999999987654
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=7.5e-05 Score=75.30 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcccC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 342 (499)
+..+...+.+.+.+.|++++.+ +|++++. + .|.+++| ++.+|.||+|+|.....++..+
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~ 211 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL 211 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcccc
Confidence 3566666777778899999988 7888754 2 3455555 7999999999998876655433
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0001 Score=73.54 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
.+|+|||||++|+++|..|++.|.+|+|||++++.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 5899999999999999999999999999999876543
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00084 Score=68.21 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 287 RHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~~-gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+. +|+++.+ ++.+++.+ .+++.+|+++.+|+||.|.|..+.
T Consensus 112 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 112 HLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 34445555555 4999988 88888643 355678889999999999998875
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0009 Score=67.82 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=63.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC-------------------------------
Q 010845 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS------------------------------- 280 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~------------------------------- 280 (499)
|+|||||+.|.-+|..|++.+ .+|+++++.+ +..
T Consensus 2 viIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYR 67 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEe
Confidence 899999999999999988755 5666666431 100
Q ss_pred --------------CCCHHHHHHHHHHHHhCCCEEEeCceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCc
Q 010845 281 --------------SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 281 --------------~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
--...+.+.+.+.+.+.|++++.+++..++.+ .|++++|+++.+|.||.|+|..+
T Consensus 68 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 68 FPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00123445566666777999876677776543 36667888999999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00012 Score=77.19 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999875
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00011 Score=78.30 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=33.2
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++.+|+|||||++||++|..|++.|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 345799999999999999999999999999999875
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=76.90 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
+||||||||++||+||..|++.|++|+|+|+++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999997653
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=74.33 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEe-C-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 284 DRLRHYATTQLSKSGVRLVR-G-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~-~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
..+...+.+.+++.|+..+. + .+..++.+ .|.+.+|+ +.+|.||+|+|...+.+....+
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 57777888888999966554 4 67777764 46666666 9999999999988776544333
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0003 Score=73.13 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=64.2
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+.+|..|++.+ .+|+++++...+ | .++.++.....+.+.+.|
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~g 207 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEG 207 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCC
Confidence 4569999999999999999998876 789999976322 1 135566666667788999
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
|+++.+.....+ +.. +.....+|.||+|+|..+
T Consensus 208 v~~~~~~~v~~~---~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 208 IEFRTNVEVGKD---ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred cEEEeCCEECCc---CCH-HHHHhhCCEEEEecCCCC
Confidence 999988422211 111 112357999999999974
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=67.62 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
..+.+.+.+.+.+.|++++.+ +|++++.+ .+++++|+++.+|+||.|.|..+. +.+.++++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~ 176 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIK 176 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCC
Confidence 345666777778889999988 88888543 366678889999999999998875 33334443
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=9.2e-05 Score=72.33 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCCcEEEECCchHHHHHHHhccC--------------CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDT--------------SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPA 126 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--------------~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 126 (499)
+.-++|||||||.|+.+|.+|+. ...+|||||..++.. ... ...+.++...
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-----~mF----------dkrl~~yae~ 281 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-----NMF----------DKRLVEYAEN 281 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-----HHH----------HHHHHHHHHH
Confidence 34589999999999999998853 356899999987532 111 1122222222
Q ss_pred cccCCCeEEEEE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 127 ISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 127 ~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+....++.+..+ .|..++ .+.+.++.. + |+..+++|--||-|||..++.
T Consensus 282 ~f~~~~I~~~~~t~Vk~V~--~~~I~~~~~-~------g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 282 QFVRDGIDLDTGTMVKKVT--EKTIHAKTK-D------GEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred HhhhccceeecccEEEeec--CcEEEEEcC-C------CceeeecceEEEecCCCCCch
Confidence 333467777666 555554 456666653 2 234689999999999988764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=67.26 Aligned_cols=91 Identities=27% Similarity=0.398 Sum_probs=68.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--CcCCC-----C----------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSS-----F---------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~-----~---------------------- 282 (499)
.|+|||||++|.-+|..|++.+ .+|+|+|+. ...+. +
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 7999999999999999999866 566666653 11110 0
Q ss_pred ---------------------------------CHHHHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEC-CCcEE
Q 010845 283 ---------------------------------DDRLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILN-DGTEV 322 (499)
Q Consensus 283 ---------------------------------~~~~~~~~~~~l~~~g-V~v~~~-~v~~v~~~----~v~~~-~g~~i 322 (499)
...+.+.+.+.+.+.+ |+++.+ +|+.++.+ .++++ ||+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~ 149 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETL 149 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEE
Confidence 1245566667776665 999998 88888754 37778 99999
Q ss_pred eeeEEEEcCCCCcc
Q 010845 323 PYGLLVWSTGVGPS 336 (499)
Q Consensus 323 ~~D~vi~a~G~~p~ 336 (499)
.||+||-|-|....
T Consensus 150 ~a~llVgADG~~S~ 163 (387)
T COG0654 150 DADLLVGADGANSA 163 (387)
T ss_pred ecCEEEECCCCchH
Confidence 99999999997764
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=74.29 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.8
Q ss_pred cEEEECCchHHHHHHHhccCCC---CeEEEEcCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPR 94 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g---~~V~lie~~ 94 (499)
||||||||+||..+|..|++.+ ++|+|||..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 6999999999999999999876 899999965
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00014 Score=75.01 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.3
Q ss_pred CcEEEECCchHHHHHHHhccC----CCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~----~g~~V~lie~~~ 95 (499)
++|+|||||++|+++|..|++ .|++|+|||+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 479999999999999999998 799999999943
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00032 Score=75.65 Aligned_cols=89 Identities=15% Similarity=0.266 Sum_probs=66.5
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+..|..|+..+ .+|+++++.+.+ | .++..+.+...+.+++.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 374 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG 374 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence 4679999999999999999999877 789999986421 1 246666666778889999
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+ .+.. .+.+++ ....+|.||+|+|..+.
T Consensus 375 v~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 375 IDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred eEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 999988 4421 122222 23468999999998754
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00096 Score=70.04 Aligned_cols=89 Identities=25% Similarity=0.352 Sum_probs=62.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC------CC---------------C-------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------SS---------------F------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l------~~---------------~------- 282 (499)
.|+|||||+.|+++|..+++.+ .+|.++++. +.+ |. +
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 7999999999999999999877 777777764 111 00 0
Q ss_pred --------------------------CH-HHHHHHHHHHHhC-CCEEEeCceEEEe--CC---eEEECCCcEEeeeEEEE
Q 010845 283 --------------------------DD-RLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 283 --------------------------~~-~~~~~~~~~l~~~-gV~v~~~~v~~v~--~~---~v~~~~g~~i~~D~vi~ 329 (499)
+. .+...+.+.+.+. |++++.+.|.++. ++ +|.+.+|.++.|+.||.
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIl 151 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVL 151 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 00 1123334445544 8898766777663 33 57788999999999999
Q ss_pred cCCCC
Q 010845 330 STGVG 334 (499)
Q Consensus 330 a~G~~ 334 (499)
|+|..
T Consensus 152 ATGTF 156 (618)
T PRK05192 152 TTGTF 156 (618)
T ss_pred eeCcc
Confidence 99954
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00011 Score=77.26 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
..+.+.+.+.+++.|++++.+ .|.+|.. + +|++++|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 467788888899999999999 8888753 3 4777888899999999998853
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00015 Score=76.06 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|||||||..|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 458999999999999999999999999999999754
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=69.16 Aligned_cols=92 Identities=23% Similarity=0.390 Sum_probs=64.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC----------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~---------------------------- 281 (499)
..|+|||||+.|+.+|..+++.+ .+|.++++. +..+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 37999999999999999998755 455555432 11000
Q ss_pred --------------C-CHHHHHHHHHHHHhCCCEEEeCceEEEeC--Ce---EEECCCcEEeeeEEEEcCCCCcc
Q 010845 282 --------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 282 --------------~-~~~~~~~~~~~l~~~gV~v~~~~v~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+ ...+.+.+.+.+.+.|++++..+|.+++. +. +++.+|.++.+|.||.|+|..+.
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 0 12344556666677899986558888753 33 34577889999999999998773
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00034 Score=75.56 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=65.7
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CC--CCCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LS--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+.+|..|+..+ .+|+++++.. + +| .++.++.+...+.+++.|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~G 257 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMG 257 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcC
Confidence 4579999999999999999999876 8899999763 2 12 235666677777888999
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+.....+ +.+.+. ...+|.||+|||..+.
T Consensus 258 v~i~~~~~v~~d---v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 258 AEFRFNTVFGRD---ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CEEEeCCcccCc---cCHHHH-HhhcCEEEEEcCCCCC
Confidence 999988432221 222222 2359999999998764
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00052 Score=71.67 Aligned_cols=74 Identities=24% Similarity=0.285 Sum_probs=58.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 309 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v 309 (499)
++|+|+|+|.+|+++|..|...+ .+|+++++.+ ......+.+.|++.||+++.+ .+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~-- 74 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT-- 74 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc--
Confidence 58999999999999999998877 8899998652 223345566788899999987 332
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 310 DSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
....+|+||.++|..|+
T Consensus 75 ----------~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 75 ----------LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred ----------ccCCCCEEEECCCcCCC
Confidence 12458999999999998
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00013 Score=75.50 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=33.1
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
+|+|||||++||+||+.|.+.|++|+|+|+++....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 599999999999999999999999999999987544
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00016 Score=68.79 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
.+++|+|||+|++||+||+.|.++ ++|||+|.+.+...+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 467999999999999999999886 799999999876554
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00026 Score=76.13 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~ 96 (499)
++.+|+||||||+||++|..|++. |++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 357999999999999999999995 999999998854
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0013 Score=66.81 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=32.7
Q ss_pred CCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+++++.+ +|.+++. + .|++++|+++.+|+||-|.|.+..
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 47999988 8888864 3 366789999999999999998765
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00053 Score=69.92 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=56.7
Q ss_pred cccEEEeCcChHHHHHHHHHHH-HHHHHHHHhcCCCCCceEEEEEeCCCcCCC--------CC---HHHHHHHHHHHHhC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FD---DRLRHYATTQLSKS 297 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~-~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~--------~~---~~~~~~~~~~l~~~ 297 (499)
.++|+|||+||+|+.+|..|.. .+ .+|+++++.+.... .. ..+...+.+.+...
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g--------------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~ 104 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHER--------------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSP 104 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcC--------------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhC
Confidence 3699999999999999997753 33 78999998632211 11 23444455556667
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++++.+ .|-. .+.+++= .-.+|.||+|+|..+.
T Consensus 105 ~v~f~gnv~VG~----Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 105 NYRFFGNVHVGV----DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred CeEEEeeeEecC----ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 8888754 3311 1111111 2269999999998864
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=67.45 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+++.|++++.+ ++.+++.+ .|++++|+++.+|+||.|.|....
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 3344555667779999988 78887542 356778889999999999998774
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=65.74 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCC-CEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~g-V~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.| ++++ + ++++++. + .+++++|+++.+|.||.|.|....
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 34555666677776 9988 6 7887753 3 356678888999999999999764
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00022 Score=74.05 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCe---EEECCCcEEeeeEEEEcCCCCcch
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~---v~~~~g~~i~~D~vi~a~G~~p~~ 337 (499)
+.++...+.+.+++.|++++.+ .|.+++.+. |.+.+| ++.+|.||+|+|.....
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~~ 239 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMAS 239 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEcccccccc
Confidence 4567778888889999999998 788886542 555555 69999999999976543
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00026 Score=73.44 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=34.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCC----CCeEEEEcCCCCcccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~----g~~V~lie~~~~~~~~ 100 (499)
.+++|+|||||.|||+||.+|.+. |.+|+|+|+++..+..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 357999999999999999999884 6899999999875543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00044 Score=74.88 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=65.0
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhC
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||+|+.|+.+|..|++.+ .+|+++++...+ | .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 35679999999999999999999877 889999986321 2 23556666667778889
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
||+++.+ .+.. .+.+++ ....+|.||+|+|....
T Consensus 391 Gv~~~~~~~v~~----~i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 391 GIEFELNCEVGK----DISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred CeEEECCCEeCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 9999988 4421 111111 12369999999998653
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00026 Score=70.29 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=37.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP 101 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 101 (499)
....+|+|||+|.+||.+|+.|.+.|++|+|+|.++++...-
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence 345799999999999999999999999999999998876653
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00021 Score=74.97 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCC----cEEeeeEEEEcCCCCcchhcc
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDG----TEVPYGLLVWSTGVGPSTLVK 340 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g----~~i~~D~vi~a~G~~p~~~~~ 340 (499)
+..+...+.+..++.|++++.+ +|.++..+ .|.+.++ .++.++.||.|+|.+...+..
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 3566666667778899999998 78887542 3555444 358999999999998876654
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0013 Score=66.24 Aligned_cols=41 Identities=7% Similarity=0.285 Sum_probs=33.5
Q ss_pred hCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..|++++.+ +|++++. + .++++||+++.+|+||-|-|.+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 358999988 7888854 3 466789999999999999998875
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00081 Score=64.95 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
...||+|||||.+|-+.|..|++.|-+|.||||+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4578999999999999999999999999999986
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00024 Score=74.66 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=34.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCC-----CeEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g-----~~V~lie~~~~~~~~ 100 (499)
.++|+|||||+|||+||..|.+.| ++|+|+|+++.....
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 478999999999999999999776 899999999876443
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=65.00 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=37.1
Q ss_pred HHHHHHHH-HhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 287 RHYATTQL-SKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l-~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+ +..|++++.+ +|.+++. + .|.+++|+++.+|+||.|.|..+.
T Consensus 113 ~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 113 RRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 33344444 3468999988 7888753 2 366778899999999999998775
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0019 Score=67.84 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEE---CCCcEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~---~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+.|++++.+ ++.+++. ++ +++ .+++++.+|.||-|.|....
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 4556667778889999999 8888864 33 344 45678999999999998864
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00027 Score=76.22 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
...++|+|||||++||+||..|++.|++|+|+|+++.....
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 34678999999999999999999999999999998865443
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0019 Score=67.67 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEC--CC-cEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN--DG-TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~--~g-~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.|++++.+ ++.+++. ++ +.+. +| +++.+|+||.|.|.++.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 34555666677889999998 7887753 33 3343 45 47999999999999874
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00025 Score=73.79 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.||++||..+++.|.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999975
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00024 Score=72.77 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEECCCcEEeeeEEEEcCCCCcchhcccC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSL 342 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 342 (499)
..+...+.+.+++.|++++.+ +|++++. +. |.++ +.++.+|.||+|+|.....+....
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~ 264 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPL 264 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHh
Confidence 466677778888999999988 8888854 32 4444 457999999999999876655444
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00038 Score=75.52 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..+++|+|||||++||++|+.|.+.|++|+|+|+++..+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 3467899999999999999999999999999999986543
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00031 Score=73.12 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=35.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCcccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFT 100 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~~~~ 100 (499)
..+++|+|||||++||+||..|++.|+ +|+|+|+++.....
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGR 65 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCc
Confidence 345789999999999999999999998 69999999876543
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00031 Score=73.64 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...||||||+|.||++||..+++.|.+|+|||+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 457999999999999999999999999999998764
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0036 Score=63.26 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCC-CEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~g-V~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+.+.| ++++.+ +|++++. + .+.+++|+++.+|+||.|.|....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 34555566666776 999988 7888754 3 356678889999999999998764
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0003 Score=73.63 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
..+.+.+.+.+++.|++++.+ .|.+|.. + +|.+.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 467788888899999999999 8888753 2 6778889899999999998864
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00033 Score=68.52 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.+|||||||.+|+++|..|.+.|++|+|+|++..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 46899999999999999999999999999998643
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00031 Score=69.78 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=33.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~~~~ 100 (499)
..+|||||||.|||+||.+|-+.|+ +++|+|.+++.+..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 4589999999999999999997765 69999999876543
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00025 Score=72.68 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
||||||+|.|||+||..+++.|.+|+|||+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 699999999999999999999999999999875
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00028 Score=73.27 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=32.6
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
+|+|||||++||++|..|++.|++|+|+|+++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999988754
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0027 Score=66.22 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcCCCCc
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+.+.+.+.+++.|++++.+ +|++++. ++ +.+.+|+++.|+.||.|.|.+.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 3445556677889999999 8888853 33 4556788999999999999865
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0038 Score=63.51 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. ||+++.+ ++.+++. + .+++.+|+++.+|+||-|-|....
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 444455555554 7999988 8888754 2 356678999999999999998864
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0025 Score=64.25 Aligned_cols=92 Identities=20% Similarity=0.376 Sum_probs=64.5
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC-CC----------C------------------
Q 010845 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SS----------F------------------ 282 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l-~~----------~------------------ 282 (499)
|+|||||++|.-+|..|.+.. .+.+|.++++. +.. +. .
T Consensus 2 viIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 899999999999999993321 12778888764 220 10 0
Q ss_pred ----------------CHHHHHHHHHHHHhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 283 ----------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 283 ----------------~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
...+.+.+.+.+.+.|+.++..+|.+|+.+ .+++++|+++.++.||-|.|..+.
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 124555566666655665555588888765 357889999999999999996654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00051 Score=71.91 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=32.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||+|.||++||.++++.|.+|+|||+.+.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 57999999999999999999999999999999865
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0033 Score=63.68 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--C----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~-~gV~v~~~-~v~~v~~--~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+.+ .|++++.+ ++++++. + .|++++|+++.+|+||-|.|....
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 344555555543 58999988 8888753 2 367788999999999999998874
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0038 Score=63.88 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECC-C--cEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILND-G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~-g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. ||+++.+ ++.+++. + .|++.+ + .++.+|+||.|.|....
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 344445555554 7999988 7888754 2 355543 2 36999999999998774
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.003 Score=64.87 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEe--CCeE--EECCCcEEeeeEEEEcCCCCc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~v--~~~~g~~i~~D~vi~a~G~~p 335 (499)
++.+.+.+..++.|++++.+ +|.++. ++.+ ...++.++.+|.||.|+|...
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 34455666677889999998 788764 3333 335677899999999999854
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00039 Score=73.53 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=53.1
Q ss_pred HHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEC---CC--cEEee
Q 010845 256 DVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILN---DG--TEVPY 324 (499)
Q Consensus 256 ~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~---~g--~~i~~ 324 (499)
++.+.+|.++++..=-+..++..+ -+..+...+.+..+++|++++++ +|.++.. + +|.+. ++ .++.+
T Consensus 123 e~~~~eP~l~~~~~ga~~~~dg~v--dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A 200 (546)
T PRK11101 123 QALILEPAVNPALIGAVKVPDGTV--DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHA 200 (546)
T ss_pred HHHHhCCCcCccceEEEEecCcEE--CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEEC
Confidence 334456666544222222232111 23456666667778899999998 8888753 3 34442 23 47999
Q ss_pred eEEEEcCCCCcchhcccCC
Q 010845 325 GLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 325 D~vi~a~G~~p~~~~~~~~ 343 (499)
|.||.|+|.+...+....+
T Consensus 201 ~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 201 PVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred CEEEECCChhHHHHHHhcC
Confidence 9999999998876655333
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=63.87 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEC---CC--cEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN---DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~---~g--~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.|++++.+ ++..++. ++ +.+. +| +++++|+||-|-|....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 46666777778889999988 7776643 33 2232 33 37899999999999875
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0037 Score=63.41 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++. ||+++.+ ++.+++. + .|.+++|+++.+|+||.|.|....
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 3445555666665 9999988 8888753 2 356678889999999999999875
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0031 Score=64.31 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=36.2
Q ss_pred HHHHHHHHh-CCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 288 HYATTQLSK-SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 288 ~~~~~~l~~-~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+ .||+++.+ +|++++.+ .|.+++|+++.+|+||-|.|....
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 334444444 37999888 78887532 467788999999999999997654
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00036 Score=74.45 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=40.8
Q ss_pred CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010845 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
..|.|.||.+.++ +.|++||+|+|+.-. .|...+ ......|.-.|+.+++++...++
T Consensus 354 ~~GGi~vd~~~~t-~I~GLyAaGE~~~g~--hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 354 SMGGLWVDYDQMT-NIPGLFAAGECDYSY--HGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred eCCCeEECCCCCe-ECCCEEECcccccCC--CCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999888 899999999997421 122222 23455677889999998877654
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0033 Score=66.00 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHHHhC-CCEEEeCceEEEe---CC---eEEECCCcEEeeeEEEEcCCCCc
Q 010845 288 HYATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 288 ~~~~~~l~~~-gV~v~~~~v~~v~---~~---~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
..+.+.+++. |++++.+.+.++. ++ +|.+.+|.++.||.||+|+|...
T Consensus 100 ~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 100 KAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 3455556666 8899877666652 22 57888898999999999999984
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.014 Score=60.06 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=77.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCC-CcC-----------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL----------------------------- 279 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~-~~l----------------------------- 279 (499)
.+|+|||||.+|+-+|..|.+.+ .. +.+++++ ++-
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCC
Confidence 48999999999999999999877 33 5555543 111
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCEEEeC---ceE--EEeCC----eEEECCCcE--EeeeEEEEcCCCCcchhcccC-C
Q 010845 280 ----SSFDDRLRHYATTQLSKSGVRLVRG---IVK--DVDSQ----KLILNDGTE--VPYGLLVWSTGVGPSTLVKSL-D 343 (499)
Q Consensus 280 ----~~~~~~~~~~~~~~l~~~gV~v~~~---~v~--~v~~~----~v~~~~g~~--i~~D~vi~a~G~~p~~~~~~~-~ 343 (499)
+.+. .+.+++.+.+++.++..... .|. ..+.+ .|+++++.+ +.+|.||+|||.-..+.+-.. |
T Consensus 75 ~~~~~~~~-~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G 153 (443)
T COG2072 75 DEAFAPFA-EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAG 153 (443)
T ss_pred cccCCCcc-cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCC
Confidence 0111 27888889999888765532 333 33333 477777765 559999999999554433222 2
Q ss_pred CCCCCCCceeeCCCCCC---CCCCCeEEecccc
Q 010845 344 LPKSPGGRIGIDEWLRV---PSVQDVFAVGDCS 373 (499)
Q Consensus 344 l~~~~~G~i~vd~~l~~---~~~~~Ifa~GD~a 373 (499)
++ +-.|.+.--.++.- -.-++|-+||--+
T Consensus 154 ~~-~f~g~~~HS~~~~~~~~~~GKrV~VIG~Ga 185 (443)
T COG2072 154 LD-EFKGRILHSADWPNPEDLRGKRVLVIGAGA 185 (443)
T ss_pred cc-CCCceEEchhcCCCccccCCCeEEEECCCc
Confidence 22 22344333222211 1346777777555
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0025 Score=66.80 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=77.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC----------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~---------------------------- 281 (499)
|+|+|||||++|+-.|..|.+.+ .+++++|+. ++-..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 59999999999999999998876 788888875 32110
Q ss_pred ---C-----------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEeC--C-------eEEECC-C--cEEeeeEEEEcCC
Q 010845 282 ---F-----------DDRLRHYATTQLSKSGV--RLVRG-IVKDVDS--Q-------KLILND-G--TEVPYGLLVWSTG 332 (499)
Q Consensus 282 ---~-----------~~~~~~~~~~~l~~~gV--~v~~~-~v~~v~~--~-------~v~~~~-g--~~i~~D~vi~a~G 332 (499)
+ ..++.++++.+.+..++ .+..+ +|.+++. + .|++++ | ++..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 1 14678888888887776 35566 7777742 1 355543 3 2456999999999
Q ss_pred CCcchhccc---CCCCCCCCCceeeCCCCCCC---CCCCeEEeccccc
Q 010845 333 VGPSTLVKS---LDLPKSPGGRIGIDEWLRVP---SVQDVFAVGDCSG 374 (499)
Q Consensus 333 ~~p~~~~~~---~~l~~~~~G~i~vd~~l~~~---~~~~Ifa~GD~a~ 374 (499)
.-..+.+-. -|++. -.|.+.--..++.+ ...+|-++|-..+
T Consensus 148 ~~~~P~~P~~~~~G~e~-F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 148 HFSKPNIPEPSFPGLEK-FKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp SSSCESB-----CTGGG-HCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CcCCCCCChhhhhhhhc-CCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 864432211 13322 24666554444432 2467888886553
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00055 Score=72.33 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||||.|||+||..+++.|.+|+|||+...
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 47999999999999999999999999999999764
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0027 Score=63.88 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++++.+ +|++++.+ .+++++|+++.+|+||-|-|..+.
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 4567777 78888543 466788999999999999998765
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00039 Score=75.50 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcCCCCcchhcc
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK 340 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~~~~ 340 (499)
+..+...+.+.+++ |++++.+ .|.+++. +. |.+.+|..+.+|.||+|+|.....+..
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~ 468 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQ 468 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccc
Confidence 45777778888888 9999988 7887753 33 455667678899999999998775544
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00045 Score=71.27 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=31.5
Q ss_pred cEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCc
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~ 97 (499)
||||||||.||++||..+++.| .+|+|||+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 6999999999999999999999 999999998653
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00043 Score=76.22 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~ 96 (499)
++|+|||||+|||++|..|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999987 899999999875
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00096 Score=73.14 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=31.5
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
...++|+|||+||.|+.+|..|+..+ .+||++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence 46789999999999999999999877 899999974
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00075 Score=66.83 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
...++|||||||.||..||...++.|.+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45689999999999999999999999999998866
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0013 Score=70.63 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=64.6
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhC
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (499)
++.++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.. | .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 45679999999999999999999876 899999876321 1 13455556666788899
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
||+++.+ .|.. + +.+++ ...++|.||+|+|..+
T Consensus 347 gv~~~~~~~v~~-~---~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 347 GVKIHLNTRVGK-D---IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred CcEEECCCEeCC-c---CCHHH-HHhcCCEEEEEcCcCC
Confidence 9999988 4421 1 11111 2357999999999864
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0007 Score=71.92 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce----EEECCCcEEeeeEEEEcCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~----v~~~~g~~i~~D~vi~a~G~ 333 (499)
..+.+.+.+.|++.|++|+++ +|.+|+. ++ +.+.+|+++.+|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 567788888888899999999 8999863 33 66778989999999999753
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0059 Score=53.19 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=28.2
Q ss_pred CCCEEE--eCceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 297 SGVRLV--RGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 297 ~gV~v~--~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.||++. ..+|.+++.. .+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 465555 3377777543 477889999999999999995
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=60.55 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC------CeEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g------~~V~lie~~ 94 (499)
..++|+|||||..|..+|++|.+.+ .+|||||..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 3489999999999999999999875 789999955
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0059 Score=61.83 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. ++. +.+ +|.+++. + .|++++|+++.+|+||.|.|....
T Consensus 113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 444555556555 465 556 7877743 3 356678889999999999999764
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0036 Score=63.35 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.|++++.+ ++.+++. + .+++++|+++.+|+||.|.|..+.
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 37888888 7888753 3 577889999999999999999875
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0006 Score=73.14 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=55.6
Q ss_pred HHHHHhcCCCCCc-----eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC----C---eEEE---C
Q 010845 255 RDVRQRYSHVKDY-----IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS----Q---KLIL---N 317 (499)
Q Consensus 255 ~~~~~~~~~~~~~-----~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~----~---~v~~---~ 317 (499)
.++.+.+|.++++ ..=.++..+ .+ -+..+...+.+..++.|++++.+ +|.++.. + +|.+ .
T Consensus 200 ~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~v---dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~ 276 (627)
T PLN02464 200 KESLELFPTLAKKGKDGSLKGTVVYYDGQM---NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL 276 (627)
T ss_pred HHHHHhCCCCCccccccceeEEEEecCcEE---cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC
Confidence 3445567777643 222222222 22 25677778888889999999998 8888742 2 2343 2
Q ss_pred CCc--EEeeeEEEEcCCCCcchhcccC
Q 010845 318 DGT--EVPYGLLVWSTGVGPSTLVKSL 342 (499)
Q Consensus 318 ~g~--~i~~D~vi~a~G~~p~~~~~~~ 342 (499)
+++ ++.+|.||.|+|.+...+...+
T Consensus 277 tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 277 TGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred CCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 343 6899999999999987665544
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0045 Score=63.87 Aligned_cols=51 Identities=20% Similarity=0.433 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEe--CC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~~v~~v~--~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+..++.||+++.++|.++. ++ .|++++|+++.+|++|=|+|+...
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 3444455566889999998776553 23 577889999999999999998764
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.006 Score=60.88 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=52.1
Q ss_pred HhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC--------CCCHH------HHHHHHH
Q 010845 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------SFDDR------LRHYATT 292 (499)
Q Consensus 227 ~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~--------~~~~~------~~~~~~~ 292 (499)
..-.++++|||||.+|++.|.+|++.| .+|+|++..+.+. .||.. +.-.+.+
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~ 186 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVE 186 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhh
Confidence 344579999999999999999999998 9999999864322 12221 2222333
Q ss_pred HHHhCCCEEEeC-ceEEEeCC
Q 010845 293 QLSKSGVRLVRG-IVKDVDSQ 312 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~ 312 (499)
.-...+|++++. +|+++++.
T Consensus 187 v~~hp~i~l~TyaeV~ev~G~ 207 (622)
T COG1148 187 VSNHPNIELITYAEVEEVSGS 207 (622)
T ss_pred hccCCceeeeeeeeeeeeccc
Confidence 334568999998 89998764
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0058 Score=62.18 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeCC--e--EEE---CCCcEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~-~gV~v~~~-~v~~v~~~--~--v~~---~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+.+ .+|+++.+ +|++++.+ + +++ .+++++.+|+||-|-|....
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 444555555554 48999988 88888543 3 334 33467999999999998875
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0015 Score=59.94 Aligned_cols=91 Identities=25% Similarity=0.315 Sum_probs=61.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEe--------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR-------- 303 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~-------- 303 (499)
+++|||||..|+.+|..|+.+. |..+|.++..+.+.... .-.+.+.+++++-.|+=..
T Consensus 1 kfivvgggiagvscaeqla~~~------------psa~illitass~vksv--tn~~~i~~ylekfdv~eq~~~elg~~f 66 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKSV--TNYQKIGQYLEKFDVKEQNCHELGPDF 66 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHHH--hhHHHHHHHHHhcCccccchhhhcccH
Confidence 3789999999999999998754 33789999887543321 1122233444444433110
Q ss_pred ----CceEEEe--CCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 304 ----GIVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 304 ----~~v~~v~--~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.|..++ +..+++++|.++.++.+++|+|.+|-
T Consensus 67 ~~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 67 RRFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcc
Confidence 1122232 34789999999999999999999996
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0015 Score=69.67 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=63.3
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhC
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||+|++|+.+|..|+..+ .+|+++++.+.+ | .++.++.+.-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 45679999999999999999998877 789999875321 1 23455666666677889
Q ss_pred CCEEEeC-ce-EEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IV-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v-~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|++++.+ .+ .++..+. ....+|.||+|+|..+.
T Consensus 201 Gv~~~~~~~~~~~~~~~~------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCEEEeCCEECCcCCHHH------HHhhCCEEEEeeCCCCC
Confidence 9999887 44 2221111 11248999999998754
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=69.15 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|||+|.+|+++|..|++.|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999765
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00099 Score=71.51 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.|||+||..+++.|.+|+|||+..
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 4699999999999999999999999999999874
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0087 Score=60.88 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCC---cEEeeeEEEEcCCCCc
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG---TEVPYGLLVWSTGVGP 335 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g---~~i~~D~vi~a~G~~p 335 (499)
..+.+.+.+.+++.|++++.+ ++.+++. ++ +.+.++ +++.+|+||-|.|...
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~ 174 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLF 174 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCc
Confidence 356777788888889999988 7887754 33 445543 5899999999999643
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0067 Score=61.13 Aligned_cols=51 Identities=14% Similarity=0.315 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.+.+.+.+.+. +++++.+ ++.++.. + .+.++++ ++.+|+||-|-|....
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 4555556666665 4888877 7777743 2 4566665 8999999999998875
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00097 Score=63.02 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=34.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
+.+++|||+|.+|+..|..|++.|.+|.|||++++.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 36899999999999999999999999999999998654
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00088 Score=71.64 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.|||+||..+++.|.+|+|||+..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 4699999999999999999999999999999874
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00066 Score=66.14 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=34.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccC------CCCeEEEEcCCCCccccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDT------SLYDVVCVSPRNHMVFTP 101 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~------~g~~V~lie~~~~~~~~~ 101 (499)
....+|||||||||||+||.+|++ ...+|.|+|+......+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 345799999999999999998864 357899999987655443
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0058 Score=61.92 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEeC--C--eEEECC------C--cEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSGVRLVRGIVKDVDS--Q--KLILND------G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~~v~~v~~--~--~v~~~~------g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+...+.|++++.+.++++.. + .+++.+ | .++.+|+||-|.|....
T Consensus 94 fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 44455666677899998667776643 2 244442 2 47999999999998663
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0016 Score=65.67 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||.+|+|+|..|++.+ .+|+++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence 7999999999999999999987 899999965
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=59.55 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=28.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||||.+|+-+|.+|++.+ .+|++++++
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g--------------~~V~lie~~ 35 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRG--------------LRVLGLDRF 35 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecc
Confidence 6999999999999999999876 889999875
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00087 Score=65.16 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=30.4
Q ss_pred CcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCcc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~ 98 (499)
+|+||||+|++|..+|.+|++.+ .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 48999999999999999999986 7999999987644
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00092 Score=69.59 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCC-CEEEeC-ceEEEeC--Ce---EEEC---CCc--EEeeeEEEEcCCCCcchhcccCCCC
Q 010845 284 DRLRHYATTQLSKSG-VRLVRG-IVKDVDS--QK---LILN---DGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 284 ~~~~~~~~~~l~~~g-V~v~~~-~v~~v~~--~~---v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
..+.+.+.+.+++.| ++++.+ +|.+++. ++ +.+. +|+ ++.+|.||+|+|.....+.+.+|++
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 467777778888876 899998 8888763 32 4432 353 6999999999999988877776654
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=60.33 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--Ce---EEE--CCCc-EEeeeEEEEcCCCCcchhcccCCCC
Q 010845 285 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LIL--NDGT-EVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 285 ~~~~~~~~~l~~-~gV~v~~~-~v~~v~~--~~---v~~--~~g~-~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
.+.+.+.+.+.+ .||+++.+ ++.++.. +. |.+ ++|+ ++.+|.||.|.|.... +.+.++++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~gi~ 178 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALAGLE 178 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHcCCC
Confidence 344555555555 48999988 7887743 32 333 3564 7999999999998864 33334443
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0089 Score=60.64 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=36.2
Q ss_pred HHHHHHHHh-CCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 288 HYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 288 ~~~~~~l~~-~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+ .|++++.+ ++.++.. + .+++++|.++.+|.||.|.|....
T Consensus 116 ~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 116 QRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 344444544 47999987 7888753 3 356678888999999999998875
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.009 Score=60.33 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~-~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+.+ .|++++.+ +|++++. + .+.+++|+++.+|+||.|.|....
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 455566666666 49999988 8888853 3 366678889999999999998764
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00078 Score=71.82 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=40.9
Q ss_pred CCCceeeCCCCC----CCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010845 348 PGGRIGIDEWLR----VPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 348 ~~G~i~vd~~l~----~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
-.|.|.||...| + ..|++||+|+|+.. ...|...+ ......|+-.|+.+++++...++
T Consensus 341 t~GGi~id~~~~v~~~t-~I~GLyAaGe~a~~-g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 341 SMGGIPTDYTGRVICET-IVKGLFAAGECACV-SVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cCCCeEECcCcccccCc-ccCCeeeccccccc-CcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 347789998888 6 89999999999741 01122111 24456788889999999877654
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0086 Score=63.50 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeCC--e--EEEC--CC--cEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~~--~--v~~~--~g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. |++++.+ ++++++.+ + ++++ +| +++.+|+||-|.|....
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 444555556554 9999998 88888643 3 4444 46 47999999999998764
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00081 Score=70.66 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||+| ||++||.++++.|.+|+|||+.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 5799999999 999999999999999999998754
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0006 Score=64.17 Aligned_cols=94 Identities=21% Similarity=0.429 Sum_probs=60.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C--cCCCC---CHHHHHH-----HHHHHHhCCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E--ILSSF---DDRLRHY-----ATTQLSKSGV 299 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~--~l~~~---~~~~~~~-----~~~~l~~~gV 299 (499)
-+|+|||||.-|+-+|..+.+... .-+|-++++. + .-|.+ +..+... -+..|--.|.
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~------------~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a 107 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLG------------SGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGA 107 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcC------------CCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCc
Confidence 489999999999999998876541 2578888875 2 22332 1111110 0011111223
Q ss_pred EEEeCceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+..+|.++++ +.|.+.+|++|.+|.+|+|+|..-+
T Consensus 108 ~wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~ 146 (446)
T KOG3851|consen 108 TWIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD 146 (446)
T ss_pred HHHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec
Confidence 333335667765 4899999999999999999998766
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0073 Score=63.23 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=29.5
Q ss_pred HhCC--CEEEeC-ceEEEeC--Ce--EEECC-CcEEeeeEEEEcCCCCcc
Q 010845 295 SKSG--VRLVRG-IVKDVDS--QK--LILND-GTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~g--V~v~~~-~v~~v~~--~~--v~~~~-g~~i~~D~vi~a~G~~p~ 336 (499)
.+.| ++++.+ +|++++. ++ +.+.+ +..+.+|.||+|+|..++
T Consensus 118 ~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 118 RQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence 3555 677767 7888854 33 44444 467999999999998654
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00088 Score=71.55 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.|||+||..+++.|.+|+|||+..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 4699999999999999999999999999999863
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0013 Score=69.66 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...||||||+|.||++||..+++ |.+|+|||+.+.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~ 42 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTL 42 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCC
Confidence 45799999999999999999964 899999998754
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00081 Score=72.27 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||||.|||+||..+++.|.+|+|||+...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 46999999999999999999999999999998743
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.001 Score=70.61 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||+|.|||+||..+++.|.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999987
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0014 Score=66.96 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.++.+.+.+.++..|.+++++ .|.+|. ++ +|++++|+++.|+.||......|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 367778888888999999999 899883 22 377889999999999999888876
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0072 Score=68.56 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=64.3
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC----------CC-CHHHHHHHHHHHHhC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS----------SF-DDRLRHYATTQLSKS 297 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~----------~~-~~~~~~~~~~~l~~~ 297 (499)
.++|+|||||+.|+..|.++++.+ .+|++++..+ +.. .. +.++.....+.+++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--------------~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--------------ARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 468999999999999999998876 8999998752 211 01 123334455566656
Q ss_pred -CCEEEeC-ceEEEeCCe-EE----EC-------CC------cEEeeeEEEEcCCCCcc
Q 010845 298 -GVRLVRG-IVKDVDSQK-LI----LN-------DG------TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 -gV~v~~~-~v~~v~~~~-v~----~~-------~g------~~i~~D~vi~a~G~~p~ 336 (499)
+|+++.+ .|..+..+. +. .. ++ .++.+|.||+|||..+.
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 5999987 777765431 10 00 11 16899999999999876
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00098 Score=70.84 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=41.0
Q ss_pred CCCceeeCCCCCCCCCCCeEEecccccc-ccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010845 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGY-LESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~~-~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
..|.|.||.+.|+++.|++||+|+|+.. .+ |...+ ......|.-.|+.+++++...++
T Consensus 345 ~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~h--Ganrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 345 YMGGIDVDIDGRNPDIVGLFSAGEAACVSVH--GANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred ecCCeEECCCCCcCCcCCeEecccccccCCC--CcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3577999999998459999999999741 11 21111 23456688889999998877654
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.01 Score=60.95 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEE--ECCCcEEeeeEEEEcCCCCc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~--~~~g~~i~~D~vi~a~G~~p 335 (499)
.+.+.+.+..++.|++++.+ +|.++.. +.+. ..++.++.+|.||.|.|...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 34445666777889999988 7887643 3332 23456899999999999854
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00099 Score=71.44 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||||.|||+||..+++.|.+|+|||+...
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 46999999999999999999999999999998753
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.001 Score=71.24 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..+++. |.+|+|||+.+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 36899999999999999999987 99999999875
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0013 Score=70.71 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..+++.|.+|+|||+..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4699999999999999999999999999999754
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0018 Score=64.01 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHM 97 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~ 97 (499)
...++|+|||||.++...+..|.+.+ .+|++|-+++.+
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 45689999999999999999998765 489999988643
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0015 Score=69.54 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+|||||+|.|||+||..+++.|.+|+|+|+.+..
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 479999999999999999999999999999998654
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0012 Score=70.45 Aligned_cols=34 Identities=29% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.|||+||..+++.|.+|+|+|+..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~ 40 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 4689999999999999999999999999999874
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0017 Score=66.36 Aligned_cols=88 Identities=23% Similarity=0.312 Sum_probs=66.0
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhCCC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSGV 299 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~gV 299 (499)
.++|+|||+||.|+.+|..|++.+ ..||++++.... | .++.++.+...+.|++.||
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCe
Confidence 369999999999999999999987 899999875321 2 2466888899999999999
Q ss_pred EEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 300 RLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.+ ++-. .+++++ -.-++|.|++++|..-.
T Consensus 189 ~~~~~~~vG~----~it~~~-L~~e~Dav~l~~G~~~~ 221 (457)
T COG0493 189 EFKLNVRVGR----DITLEE-LLKEYDAVFLATGAGKP 221 (457)
T ss_pred EEEEcceECC----cCCHHH-HHHhhCEEEEeccccCC
Confidence 99988 4421 122211 12245999999997654
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0013 Score=70.17 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHhcc----CCCCeEEEEcCCC
Q 010845 64 RVVVLGSGWAGCRLMKGID----TSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~----~~g~~V~lie~~~ 95 (499)
+|||||||.|||+||..++ +.|.+|+|||+..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 6999999999999999998 6799999999875
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=60.74 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|..|++.. ++.+|++++++.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~------------~G~~V~vlE~~~ 59 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQR------------PALDVLVLEADL 59 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEeCCc
Confidence 7999999999999999999861 117899998764
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0016 Score=71.05 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
..++|+|||||++||.+|..|.+.|++|+|+|+++.....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 4579999999999999999999999999999998875443
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.011 Score=53.15 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=68.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHH-HHHhc--CCCCCceEEEEEeCCCcCCCC-----CHHHHHHHHHHHHhCCCEEEe
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRD-VRQRY--SHVKDYIHVTLIEANEILSSF-----DDRLRHYATTQLSKSGVRLVR 303 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~-~~~~~--~~~~~~~~Vtlv~~~~~l~~~-----~~~~~~~~~~~l~~~gV~v~~ 303 (499)
+|+|||.||.+--.|..+++.--+. +.+-+ ....++-+.|--..-+-+|.| ++++.+.+.+.-++.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 8999999999999888887642000 00000 011122222222111223444 468888999999999999999
Q ss_pred CceEEEeCCe---EEECCCcEEeeeEEEEcCCCCcc
Q 010845 304 GIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 304 ~~v~~v~~~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..|.+++-.+ ..++|.+.+.+|.||+|||....
T Consensus 90 EtVskv~~sskpF~l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 90 ETVSKVDLSSKPFKLWTDARPVTADAVILATGASAK 125 (322)
T ss_pred eehhhccccCCCeEEEecCCceeeeeEEEeccccee
Confidence 9887776542 33356678999999999998765
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0061 Score=57.65 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.|||||+|.|||+|+..+-..+-.|+|+|++..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s 43 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGS 43 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence 599999999999999999887767999997643
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0016 Score=68.34 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||+|.|||+||..+++ |.+|+|||+.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4699999999999999999976 899999998754
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0014 Score=69.80 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=30.8
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~ 96 (499)
..||||||||.|||+||..+++. |.+|+|||+...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 36899999999999999999876 589999998753
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0019 Score=66.33 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=39.1
Q ss_pred CCCceeeCCCCCCCCCCCeEEeccccc--cccCCCCCCC-CchHHHHHHHHHHHHHHHHHHH
Q 010845 348 PGGRIGIDEWLRVPSVQDVFAVGDCSG--YLESTGKTVL-PALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~--~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
-.|.|.||...|+ ..|++||+|.|+. +. |...+ ......+.--|+.||++++..+
T Consensus 330 t~GGi~vd~~~~t-~i~gLYAaGE~a~~g~h---G~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 330 FMGGIKVDLNSKT-SMKNLYAFGEVSCTGVH---GANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ecCCEEECCCccc-cCCCeEecccccccCCC---ccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 3577999999997 8999999999973 22 21111 2334567778899998887654
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0014 Score=70.63 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||||.|||.||..+++.|.+|+|||+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 46899999999999999999999999999998643
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0013 Score=70.14 Aligned_cols=34 Identities=35% Similarity=0.406 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCC---CeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g---~~V~lie~~~ 95 (499)
..+|||||||.|||+||..+++.| .+|+|||+..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 368999999999999999999987 8999999875
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.028 Score=57.37 Aligned_cols=91 Identities=24% Similarity=0.281 Sum_probs=61.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC-----C--------C---------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-----S--------S--------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l-----~--------~--------------- 281 (499)
++|+|||+|++|+-.|..|.+.+ .+++++++. .+- . .
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~ 72 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMG 72 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhc
Confidence 58999999999999999998865 566666554 221 0 0
Q ss_pred ---C-----------C-HHHHHHHHHHHHhCCCE--EEeC-ceEEEeC----C-eEEECCC----cEEeeeEEEEcCCCC
Q 010845 282 ---F-----------D-DRLRHYATTQLSKSGVR--LVRG-IVKDVDS----Q-KLILNDG----TEVPYGLLVWSTGVG 334 (499)
Q Consensus 282 ---~-----------~-~~~~~~~~~~l~~~gV~--v~~~-~v~~v~~----~-~v~~~~g----~~i~~D~vi~a~G~~ 334 (499)
+ + .++.+++....+.-++. +..+ ++.+++. . .|.+.++ ++.-+|.|++|+|.-
T Consensus 73 ~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 73 YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 0 1 15677777777777763 3344 4555543 2 3555443 367799999999988
Q ss_pred c
Q 010845 335 P 335 (499)
Q Consensus 335 p 335 (499)
.
T Consensus 153 ~ 153 (448)
T KOG1399|consen 153 V 153 (448)
T ss_pred C
Confidence 4
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0015 Score=69.42 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=38.9
Q ss_pred CceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 350 G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|.|.||..++| +.|++||+|||+.. + ......|.-.|+.++.++...++
T Consensus 357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~----~----~~~~~~~~~~G~~a~~~~~~~~~ 405 (554)
T PRK08275 357 SGVWVNEKAET-TVPGLYAAGDMASV----P----HNYMLGAFTYGWFAGENAAEYVA 405 (554)
T ss_pred CcEEECCCCcc-CCCCEEECcccCCc----h----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999 99999999999742 1 24455688889999998877664
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0031 Score=63.98 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=32.9
Q ss_pred HHHHHHHHh-CCCEEEeCceEEEeC------CeEEECCCcEEeeeEEEEcCCC
Q 010845 288 HYATTQLSK-SGVRLVRGIVKDVDS------QKLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 288 ~~~~~~l~~-~gV~v~~~~v~~v~~------~~v~~~~g~~i~~D~vi~a~G~ 333 (499)
+.+++.++. .++.++.+.|.++.- .+|++.+|..+.|+.||++||.
T Consensus 104 ~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 104 RAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred HHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 344444543 478888775554421 3688999999999999999997
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.018 Score=59.33 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCC---CEEEeC-ceEEEeC---------C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSG---VRLVRG-IVKDVDS---------Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~g---V~v~~~-~v~~v~~---------~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+.+ |+++.+ ++.+++. + .|++.+|+++.+|+||-|-|....
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4445556666654 999988 8888851 2 467788999999999999999875
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.017 Score=58.72 Aligned_cols=51 Identities=18% Similarity=0.395 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEeC-----C--eEEE--CC-----C--cEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSGVRLVRGIVKDVDS-----Q--KLIL--ND-----G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~~v~~v~~-----~--~v~~--~~-----g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+...+.|++++.+++.++.. + .|++ .+ | .++.+|+||-|.|..+.
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSR 161 (398)
T ss_pred HHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchH
Confidence 33445556677899998776655521 1 3433 11 3 47999999999998774
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.021 Score=57.97 Aligned_cols=50 Identities=8% Similarity=0.033 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEeC-C----eEEE-CCCc--EEeeeEEEEcCCCCcc
Q 010845 287 RHYATTQLSKSGVRLVRG-IVKDVDS-Q----KLIL-NDGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~~gV~v~~~-~v~~v~~-~----~v~~-~~g~--~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+...+.|++++.+ ++.+++. + .|.+ .+|+ ++.+|+||-|-|....
T Consensus 106 ~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 106 TRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 344445556779999988 7777754 2 4566 4664 6899999999998875
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0019 Score=68.57 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||+|.+|+++|..+++.|.+|+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 57899999999999999999999999999998754
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.016 Score=61.50 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeC--CeE--EE--CCCc-EEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--QKL--IL--NDGT-EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~~v--~~--~~g~-~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. +++++.+ ++.+++. +++ .+ .+++ ++.+|+||.|.|..+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 444555666654 7999988 8888864 333 33 2454 6999999999998875
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0058 Score=64.19 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=70.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC------c-C-CCCC-----HHHHHHHHHHHHhCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE------I-L-SSFD-----DRLRHYATTQLSKSG 298 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~------~-l-~~~~-----~~~~~~~~~~l~~~g 298 (499)
+++|||.|..|.-+..++.+... ...+||++-..+ + | +.++ +++.-.-.+..+++|
T Consensus 5 klvvvGnGmag~r~iEell~~~~-----------~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~ 73 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESAP-----------DLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENG 73 (793)
T ss_pred eEEEEecccchhhHHHHHHhcCc-----------ccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcC
Confidence 89999999999999999887431 226788775431 1 1 1111 233334456788999
Q ss_pred CEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++++ ++..++.+ .|+.++|.++.+|-+|+|||..|.
T Consensus 74 i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 74 ITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred cEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence 999999 89999875 677788999999999999999986
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0026 Score=67.63 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
...+|+|||+|.+|+++|..+++.|.+|+|||+....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999987543
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0018 Score=68.62 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=40.1
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.||.+.|+ ..|++||+|+|+.-.+ |.... ......|.-.|++|++++...+.
T Consensus 348 ~GGi~vd~~~~t-~IpGLyAaGE~~gg~h--G~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 348 MGGIRINEDCET-NIPGLFACGEVAGGVH--GANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred cCCEEECCCCcc-cCCCeEeccccccCCC--CCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 477999999998 8999999999874111 21111 22345678889999999877654
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0019 Score=67.57 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=30.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.||||||||.|||+||..+++.|. |+|||+.+.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~ 35 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV 35 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence 589999999999999999999997 999998843
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.016 Score=59.30 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.++.+ +|.+++. + .+.+++|+++.+|.||.|.|....
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 3456667 7877753 2 366788999999999999998864
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0029 Score=65.17 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
...||+|||||+.|+.+|+.++.+|++|+|+|+.+.-..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsG 49 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG 49 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCc
Confidence 568999999999999999999999999999999986433
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0033 Score=59.65 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCc--EEeeeEEEEcCCCCcc-hhcc----------cCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGT--EVPYGLLVWSTGVGPS-TLVK----------SLD 343 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~--~i~~D~vi~a~G~~p~-~~~~----------~~~ 343 (499)
+-++.+.+...++..|.-++++ +|.+.+- + .|.+.+.. .+.+|..|+|+|.--. -+.. .++
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ld 336 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLD 336 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcc
Confidence 3467888999999999999998 7776643 2 45556654 4569999999986432 1111 111
Q ss_pred CCCC-------------C----CCceeeCCCCCCC----CCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 010845 344 LPKS-------------P----GGRIGIDEWLRVP----SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402 (499)
Q Consensus 344 l~~~-------------~----~G~i~vd~~l~~~----~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i 402 (499)
+... + .=.+.+|+++|.. .+.|+||+|.+..-.++.-. .--..+|+..|-.+|+.|
T Consensus 337 i~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~e---gcGsGVaivta~~aa~qi 413 (421)
T COG3075 337 ILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAE---GCGSGVAIVTALHAAEQI 413 (421)
T ss_pred cccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHh---cCCcchHHHHHHHHHHHH
Confidence 1100 0 0126778887762 26799999998852221100 000234666677777776
Q ss_pred HHHH
Q 010845 403 NRIG 406 (499)
Q Consensus 403 ~~~~ 406 (499)
....
T Consensus 414 ~~~~ 417 (421)
T COG3075 414 AERA 417 (421)
T ss_pred HHHh
Confidence 6543
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0047 Score=58.95 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=70.4
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHH--HHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRD--VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 305 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~--~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 305 (499)
.-.|+||||||.|...|...++.+-+. ..++|...- .+..-|+.- .....-++++...++++.++..|+++.. +
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQv--ldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qr 288 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQV--LDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQR 288 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCee--ccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhh
Confidence 348999999999999888888765221 122222100 000001110 1122347899999999999999999977 6
Q ss_pred eEEEeC----C---eEEECCCcEEeeeEEEEcCCCCc
Q 010845 306 VKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 306 v~~v~~----~---~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+.+++ + .|++.+|-.+.+..+|++||.+=
T Consensus 289 a~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 289 ASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred hhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 666554 2 68899999999999999999763
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.019 Score=58.70 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCC-----cEEeeeEEEEcCCCCcchhcccC
Q 010845 288 HYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG-----TEVPYGLLVWSTGVGPSTLVKSL 342 (499)
Q Consensus 288 ~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g-----~~i~~D~vi~a~G~~p~~~~~~~ 342 (499)
..+.+.+++.|++++.+ +|.+++. +. +.+.++ .++.+|.||+|+|.....+...+
T Consensus 201 ~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~ 265 (410)
T PRK12409 201 TGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAML 265 (410)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHh
Confidence 33445566889999988 7888753 33 333332 37999999999999876554433
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0026 Score=67.76 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||+|.|||+||..+++.| +|+|||+.+.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~ 62 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP 62 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence 469999999999999999999999 9999998764
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.025 Score=58.29 Aligned_cols=51 Identities=14% Similarity=0.345 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEeC-----C--eEEECC-------C--cEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSGVRLVRGIVKDVDS-----Q--KLILND-------G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~~v~~v~~-----~--~v~~~~-------g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+...+.|++++.+.+.+++. + .|.+.+ | .++.+|+||-|.|....
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 134 LDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred HHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchH
Confidence 33445555677899998776666641 2 244422 3 47999999999998663
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.003 Score=59.85 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...|-|||||.||-.||+++++.|+.|.|+|-++
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 4579999999999999999999999999999764
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0017 Score=69.45 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=38.9
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCC-chHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p-~~~~~A~~~g~~aa~~i~~~~ 406 (499)
.|.|.+|...+| +.|++||+|+|+.-.+ |...+. .....+.-.|+.+|+++....
T Consensus 370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~h--g~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 370 MGGLWVDYDQMT-NIPGLFAAGECDFSQH--GANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCCeeECCCCcc-cCCCEEECcccccCcC--CCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999998 8999999999974221 222211 344567778888888877654
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0025 Score=65.44 Aligned_cols=98 Identities=29% Similarity=0.396 Sum_probs=25.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC----------C-------------------
Q 010845 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF----------D------------------- 283 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~----------~------------------- 283 (499)
|+|||||+.|+-.|..+++.+ .+|.|+++...+... .
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~ 67 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL 67 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST
T ss_pred EEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH
Confidence 899999999999999999987 899999886433210 0
Q ss_pred ----------------------HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECC---CcEEeeeEEEEcCC
Q 010845 284 ----------------------DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILND---GTEVPYGLLVWSTG 332 (499)
Q Consensus 284 ----------------------~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~---g~~i~~D~vi~a~G 332 (499)
......+.+.+++.||+++.+ .|.++..+ +|++.+ ..++.++.+|=|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 68 RARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 001112334456778888888 67666433 455554 46799999999999
Q ss_pred CCcchhcccCCCCC
Q 010845 333 VGPSTLVKSLDLPK 346 (499)
Q Consensus 333 ~~p~~~~~~~~l~~ 346 (499)
.- .+....|.+.
T Consensus 148 ~g--~l~~~aG~~~ 159 (428)
T PF12831_consen 148 DG--DLAALAGAPY 159 (428)
T ss_dssp --------------
T ss_pred cc--cccccccccc
Confidence 42 3444445443
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0038 Score=66.63 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
...+|||||+|.+|+++|..+++.|++|+|||+++...
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~g 48 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFG 48 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 35799999999999999999999999999999986543
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.004 Score=66.48 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+|||||+|.+|+++|..+++.|.+|+|||+.+..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999987643
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.003 Score=62.06 Aligned_cols=39 Identities=13% Similarity=0.007 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~ 99 (499)
..++|+|+|||.+||++|++|++.+. .|+|+|..++...
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 34789999999999999999999765 4777999887543
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0035 Score=72.16 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=34.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+...||||||+|.||++||..+++.|.+|+|+|+.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 34579999999999999999999999999999998654
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.079 Score=47.92 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=55.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC-------CCC--------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-------SFD-------------------- 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~-------~~~-------------------- 283 (499)
.|+|||+|++|+-+|..|++.+ .+|.++++.. +-. .|+
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 8999999999999999999887 8999999762 211 111
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeC-ceEEE--eC-C---eEEEC-----------CCcEEeeeEEEEcCCCC
Q 010845 284 -----------DRLRHYATTQLSKSGVRLVRG-IVKDV--DS-Q---KLILN-----------DGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~v~~~-~v~~v--~~-~---~v~~~-----------~g~~i~~D~vi~a~G~~ 334 (499)
..+...+....-+.|++++.. .|+++ .+ + +|.+. |--.+.+..||=|||..
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 112222223333588998887 66665 22 2 33332 22378999999999988
Q ss_pred cc
Q 010845 335 PS 336 (499)
Q Consensus 335 p~ 336 (499)
.+
T Consensus 165 a~ 166 (230)
T PF01946_consen 165 AE 166 (230)
T ss_dssp SS
T ss_pred hH
Confidence 75
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=64.35 Aligned_cols=92 Identities=21% Similarity=0.307 Sum_probs=68.3
Q ss_pred HHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-Cc---C----C--CCCHHHHHHHHHHHH
Q 010845 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI---L----S--SFDDRLRHYATTQLS 295 (499)
Q Consensus 226 ~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~---l----~--~~~~~~~~~~~~~l~ 295 (499)
..+.+++|+|||.|+.|+-+|..|.+.+ ..|++.+|. ++ | | .++..+.+.-.+.|.
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~g--------------h~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~ 1846 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAG--------------HTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLE 1846 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcC--------------cEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHH
Confidence 3467789999999999999999999887 789999986 42 2 2 245667777778899
Q ss_pred hCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.||+++++ +|-.- +.+ |+-.-+.|.||+|+|..-+
T Consensus 1847 ~egi~f~tn~eigk~----vs~-d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1847 QEGIRFVTNTEIGKH----VSL-DELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred hhCceEEeecccccc----ccH-HHHhhccCeEEEEeCCCCC
Confidence 999999988 44221 111 2223457899999997643
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.028 Score=57.08 Aligned_cols=91 Identities=21% Similarity=0.343 Sum_probs=61.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c----CC--------------CC----------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I----LS--------------SF---------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~----l~--------------~~---------- 282 (499)
.|+|||+|++|.-+|..|++.+ .+|.++++.. . .. ..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 7999999999999999999876 4555555431 1 00 00
Q ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEECCCcEEeeeEEEEcCCC
Q 010845 283 -----------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 283 -----------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~---v~~~~g~~i~~D~vi~a~G~ 333 (499)
...+.+.+.+..++.|++++.+ ++..+. +++ .+..++.++.++.||.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 1234445566667889999988 777664 222 22233468999999999997
Q ss_pred Ccc
Q 010845 334 GPS 336 (499)
Q Consensus 334 ~p~ 336 (499)
...
T Consensus 151 ~s~ 153 (396)
T COG0644 151 NSA 153 (396)
T ss_pred chH
Confidence 653
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.004 Score=66.05 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
...+|||||+| +|++||..+++.|.+|+|||+.+.+...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 36899999999 8999999999999999999998765443
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0034 Score=71.18 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=34.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..++|+|||||++|+++|..|.+.|++|+|||+++....
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 357899999999999999999999999999999876543
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0031 Score=65.95 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=33.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
++|+|||+|++|+.+|+.|++.|++|+|||+.....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 489999999999999999999999999999987654
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0026 Score=67.77 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=40.2
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.+|...|| +.|++||+|+|+.. ...|...+ ......|.-.|+.+++++...+.
T Consensus 357 ~GGi~~d~~~~t-~i~GLyAaGe~a~~-G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~ 414 (580)
T TIGR01176 357 MGGIETDINCET-RIKGLFAVGECASV-GLHGANRLGSNSLAELVVFGRRAGEAAAERAA 414 (580)
T ss_pred CCCeeECcCccc-ccCCeEeeeccccc-CcCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 467999999998 89999999999742 11122211 13455678889999998877653
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.032 Score=56.58 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEe---C--CeEEEC-CCc--EEeeeEEEEcCCCCcc
Q 010845 287 RHYATTQLSKSGVRLVRG-IVKDVD---S--QKLILN-DGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~~gV~v~~~-~v~~v~---~--~~v~~~-~g~--~i~~D~vi~a~G~~p~ 336 (499)
...+.+.+.+.|++++.+ ++.++. + ..|++. +|+ ++.+|+||-|-|....
T Consensus 106 ~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 106 TRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 344555566678888877 555552 2 267775 775 6899999999998875
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0028 Score=67.55 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010845 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
..|.|.||.+.|+ +.|++||+|+|+... ..|...+ ......|.-.|+++++++...++
T Consensus 357 t~GGi~vd~~~~t-~i~GLyAaGe~~~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 357 TMGGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred eCCCEEECCCCcc-ccCCEEecccccccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 3577999999998 999999999997421 1122111 23455677889999999887764
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0043 Score=66.05 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~~~~ 96 (499)
.+|+||||||.||+.+|.+|++ .|++|+|||+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4799999999999999999999 7999999999864
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.026 Score=61.39 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=29.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.+|+|||||.+|+-+|..|++.+ .+|+++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G--------------~~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRG--------------WQVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--------------CeEEEEecC
Confidence 38999999999999999999877 789999976
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0034 Score=70.51 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=40.0
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.||.+.+| +.|++||+|||+... .+....|.-.|+.++.++..++.
T Consensus 361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 361 ASGVWVDEHART-TVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred cceEEecCCCcc-cCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHHHh
Confidence 478999999999 999999999998521 34455678889999998877654
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.027 Score=59.70 Aligned_cols=32 Identities=22% Similarity=0.487 Sum_probs=28.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|.+|+..+ .+|+++++.+
T Consensus 8 DVvIIGGGi~G~~iA~~La~rG--------------~~V~LlEk~d 39 (546)
T PRK11101 8 DVIIIGGGATGAGIARDCALRG--------------LRCILVERHD 39 (546)
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CeEEEEECCC
Confidence 7999999999999999999877 7899988754
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.039 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||.|+.||..|.-|++.|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999764
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0036 Score=66.88 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..+++. .+|+|+|+..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 36899999999999999999876 8999999874
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0048 Score=65.25 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=39.2
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
.|.|.||.+.|| +.|++||+|+|+.. ...|...+ ......|.-.|+.+++++....
T Consensus 353 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 353 CGGVMVDLHGRT-DLDGLYAIGEVSYT-GLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred cCCeeECCCCcc-ccCCEEeccccccc-ccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 477999999998 89999999999731 01122111 2345567778999999887654
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.004 Score=65.47 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+.+|||||||.|||.||..+++.|.+|+|+|+.+.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 457999999999999999999999999999997643
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=53.32 Aligned_cols=47 Identities=30% Similarity=0.335 Sum_probs=31.8
Q ss_pred HhCCCEEEeCceEEEeCC--e---EEEC---C-CcEEeeeEEEEcCCCCcchhccc
Q 010845 295 SKSGVRLVRGIVKDVDSQ--K---LILN---D-GTEVPYGLLVWSTGVGPSTLVKS 341 (499)
Q Consensus 295 ~~~gV~v~~~~v~~v~~~--~---v~~~---~-g~~i~~D~vi~a~G~~p~~~~~~ 341 (499)
++.||+++.++|.++.++ . +... + ....+++.+|++.|-+...++..
T Consensus 159 k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~ 214 (380)
T KOG2852|consen 159 KRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPF 214 (380)
T ss_pred hhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhccc
Confidence 345699999998888532 1 2222 1 34678999999999887654433
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.21 Score=50.37 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEeCC-----eEEEC-----CCcEEeeeEEEEcCCCCcchhcccCCCCCCC-CCc
Q 010845 285 RLRHYATTQLSKS-GVRLVRG-IVKDVDSQ-----KLILN-----DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP-GGR 351 (499)
Q Consensus 285 ~~~~~~~~~l~~~-gV~v~~~-~v~~v~~~-----~v~~~-----~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~-~G~ 351 (499)
.+.+.+.+.+.+. |++++.+ +|++++.. .|.+. +..++.++.|++.+|-..-++++++|++... -|.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gygg 261 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGG 261 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCC
Confidence 5666677777777 9999999 88888653 34442 2357999999999999888899998875322 233
Q ss_pred eeeC-CCCCC
Q 010845 352 IGID-EWLRV 360 (499)
Q Consensus 352 i~vd-~~l~~ 360 (499)
..|. .+|++
T Consensus 262 fPVsG~fl~~ 271 (488)
T PF06039_consen 262 FPVSGQFLRC 271 (488)
T ss_pred CcccceEEec
Confidence 3343 44555
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.041 Score=56.23 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHHHHHHh-CC-CEEEeC-ceEEEeC--C--eEEECCC-----cEEeeeEEEEcCCCCcc
Q 010845 287 RHYATTQLSK-SG-VRLVRG-IVKDVDS--Q--KLILNDG-----TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~-~g-V~v~~~-~v~~v~~--~--~v~~~~g-----~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+ .| ++++.+ ++++++. + .+.+.++ +++.+|+||-|-|....
T Consensus 105 ~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 105 QMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 3344444444 36 468888 7888753 3 2444443 48999999999998764
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.039 Score=58.67 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=35.3
Q ss_pred HHHHHHHHHHh-CCCEEEeC-ceEEEeCC--e--EEE---CCCc--EEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~-~gV~v~~~-~v~~v~~~--~--v~~---~~g~--~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+++ .||+++.+ ++.+++.+ + +++ .+|+ ++.+|+||.|.|....
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 34445555554 48999999 88888643 3 333 2353 6899999999998764
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0065 Score=63.86 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=39.0
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.||.+.|+ +.|++||+|+|+.. ...|...+ ......|.-.|+.+++++.....
T Consensus 341 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 341 MGGIAVDADGRS-SLPGLWAAGEVAST-GLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred cCCEEECCCCcc-ccCCEEeccccccc-CCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477999999998 89999999999731 01121111 23345567788999998876543
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.026 Score=58.62 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHhcCCCC-CceEEEEEeCCCcCCCCCH-HHHHHHHHHHHhCCCEEEeC-ceEEEeC-----CeEEECCCcEEeeeEE
Q 010845 256 DVRQRYSHVK-DYIHVTLIEANEILSSFDD-RLRHYATTQLSKSGVRLVRG-IVKDVDS-----QKLILNDGTEVPYGLL 327 (499)
Q Consensus 256 ~~~~~~~~~~-~~~~Vtlv~~~~~l~~~~~-~~~~~~~~~l~~~gV~v~~~-~v~~v~~-----~~v~~~~g~~i~~D~v 327 (499)
+..+.||.+. ++..-.|..+.+- .++| .+.+.+....++.|+.|+.+ .|+++.. .+|.+.-| .|++..+
T Consensus 159 e~~~~~pLLn~d~v~g~Ly~P~DG--~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~ 235 (856)
T KOG2844|consen 159 ETQELFPLLNVDDVYGGLYSPGDG--VMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECV 235 (856)
T ss_pred HHHHhCcccchhHheeeeecCCCc--ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceE
Confidence 3345566654 3455566666531 2333 56667777788899999988 8888743 25776666 5899999
Q ss_pred EEcCCCCcchh
Q 010845 328 VWSTGVGPSTL 338 (499)
Q Consensus 328 i~a~G~~p~~~ 338 (499)
|-|+|++....
T Consensus 236 VNaaGvWAr~V 246 (856)
T KOG2844|consen 236 VNAAGVWAREV 246 (856)
T ss_pred EechhHHHHHh
Confidence 99999998654
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.014 Score=58.15 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=21.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFI 253 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~ 253 (499)
.|+|||||..|+|.|.+.++.|
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~G 51 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLG 51 (679)
T ss_pred cEEEECCCccchHHHHHHHhcC
Confidence 7999999999999999999987
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0083 Score=48.15 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||..|..-+..|.+.|.+|+||.++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45789999999999999999999999999998863
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.052 Score=57.01 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECC---Cc--EEeeeEEEEcCCCCcchhcc
Q 010845 289 YATTQLSKSGVRLVRG-IVKDVDS--Q--KLILND---GT--EVPYGLLVWSTGVGPSTLVK 340 (499)
Q Consensus 289 ~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~---g~--~i~~D~vi~a~G~~p~~~~~ 340 (499)
.+.+...+.|++++.+ +|.++.. + ++.+.+ |+ ++.++.||.|+|.+.+.+..
T Consensus 160 ~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 221 (508)
T PRK12266 160 LNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLD 221 (508)
T ss_pred HHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHh
Confidence 3344566789999988 8888753 2 244443 43 68999999999998876654
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.071 Score=55.98 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhC-CCEEEeCceEEEe-CC----eEEE--CCCcE--EeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKS-GVRLVRGIVKDVD-SQ----KLIL--NDGTE--VPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~-gV~v~~~~v~~v~-~~----~v~~--~~g~~--i~~D~vi~a~G~~p~ 336 (499)
++.+.+.+.+.+. ||+++.+++.++. ++ +|++ ++|++ +.+|+||.|.|....
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH
Confidence 3455555555554 7888877655543 22 3454 35653 568999999998875
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.071 Score=53.81 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=19.5
Q ss_pred cEEEeCcChHHHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDF 252 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~ 252 (499)
+|+|||||++|+.+|.+|.+.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred eEEEECCchHHHHHHHHHHhC
Confidence 899999999999999999864
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0091 Score=63.21 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHhccCCC-CeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~ 96 (499)
|+||||||.||+.+|.+|++.+ ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999987 79999999864
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.013 Score=55.87 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|+|||+|.|||-||.+|+..|.+|+|+|+++
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 4789999999999999999999999999999874
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.11 Score=51.76 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=30.6
Q ss_pred HhCCCEEEeC-ceEEEeC--Ce--EEE-CCCc--EEeeeEEEEcCCCCcc
Q 010845 295 SKSGVRLVRG-IVKDVDS--QK--LIL-NDGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~--~~--v~~-~~g~--~i~~D~vi~a~G~~p~ 336 (499)
.+.||+++.+ .+.+++. ++ +.+ ++|+ ++.+|.||.|.|....
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 3568999988 7777743 33 343 4564 6899999999998764
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.067 Score=57.38 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.3
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHH
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFI 253 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~ 253 (499)
+..+|+|||||+.|+-+|..|++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~G 104 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKG 104 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcC
Confidence 4468999999999999999999876
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.032 Score=61.59 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=26.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||+.|+-+|..|++.+ ++.+|+++++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~ 34 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERN 34 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecC
Confidence 7999999999999999998762 11677777765
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.016 Score=52.75 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||..|..-+..|.+.|.+|+||+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34689999999999999999999999999999864
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.017 Score=61.02 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|+||||+|.+|..+|..|+..|.+|+|+|+...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 3468999999999999999999988999999999853
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.019 Score=49.95 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
-+.++|+|||||..|..-|..|.+.|++|+||+++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 34579999999999999999999999999999754
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=54.57 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEE--CCC--cEEeeeEEEEcCC-CCcc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLIL--NDG--TEVPYGLLVWSTG-VGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~--~~g--~~i~~D~vi~a~G-~~p~ 336 (499)
.+.+.+.+.+++.||+++.+ .++++.. + +|.+ .++ .++.+|.||+|+| +..|
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 34555666677889999988 7777753 2 2444 333 3688999999998 4444
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.11 Score=52.41 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=29.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.+|+|||||.+|+-+|.+|++.+ .+|+++++..
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~G--------------~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAERG--------------ADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHcC--------------CEEEEEecCc
Confidence 38999999999999999999987 6888888654
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.017 Score=61.47 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|++|||||.||+.+|..|.+ +.+|+|||+.+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 45899999999999999999998 689999999864
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.018 Score=56.43 Aligned_cols=48 Identities=38% Similarity=0.645 Sum_probs=39.2
Q ss_pred HhCCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc--hhcccC
Q 010845 295 SKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS--TLVKSL 342 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~--~~~~~~ 342 (499)
...||-+..+ +|..++. ..|+++||.+|.+|-+++|||.+|. +.+++.
T Consensus 268 ~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A 320 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEA 320 (659)
T ss_pred ccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhc
Confidence 3568999999 7888865 4799999999999999999999997 344443
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.0068 Score=53.80 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~ 99 (499)
..+|||||+|.+||++|+.+.++ +.+|.+||.+-....
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 35899999999999999999854 688999998754433
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.015 Score=50.66 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
||.|||||..|.++|..|+.+|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999875
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.12 Score=55.75 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCC--CEEEeC-ceEEEeCC-------eEEEC------CC--cEEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSG--VRLVRG-IVKDVDSQ-------KLILN------DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~g--V~v~~~-~v~~v~~~-------~v~~~------~g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+.+ |++..+ ++++++.+ .++++ +| +++.+|+||-|-|.+..
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence 4555666676766 466777 78877532 24553 35 57999999999998764
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.011 Score=60.76 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=28.3
Q ss_pred EECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 67 IIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
|||+|.||++||..+++.|.+|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999863
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.032 Score=50.88 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=49.7
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|||||.+|..-+..|.+.+ .+|+++.+. +.+++. +..++.+|+++.+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~l~----~l~~~~~i~~~~~~~~-- 63 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESELT----LLAEQGGITWLARCFD-- 63 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHHHH----HHHHcCCEEEEeCCCC--
Confidence 359999999999999999998877 899999753 223332 3233345666544211
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCC-cc
Q 010845 310 DSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 336 (499)
.+..-.+|+||.|||.. .|
T Consensus 64 --------~~dl~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 64 --------ADILEGAFLVIAATDDEELN 83 (205)
T ss_pred --------HHHhCCcEEEEECCCCHHHH
Confidence 01112489999999987 45
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.24 Score=51.54 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEe--CCe---EEECCCcEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSGVRLVRGIVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~~v~~v~--~~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.||+++.+.+..+. ++. +.. +++.+.++.||+|||-.+.
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 45555566667778888766554443 222 333 5668999999999998765
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.017 Score=54.55 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeCC-------eEEECC--CcEEeeeEEEEcCCCCcchhcccCCCCCCC
Q 010845 288 HYATTQLSKSGVRLVRG-IVKDVDSQ-------KLILND--GTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 348 (499)
Q Consensus 288 ~~~~~~l~~~gV~v~~~-~v~~v~~~-------~v~~~~--g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~ 348 (499)
..+-+.++..|-++.++ +++.+..+ -+++.+ ++++.+..+|-|+|...+......+++.|+
T Consensus 200 ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dP 270 (453)
T KOG2665|consen 200 LSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDP 270 (453)
T ss_pred HHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCC
Confidence 33444578888888888 88777553 133333 578999999999999887666666766654
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.031 Score=50.82 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
..++|+|||||-.|...|..|.+.|.+|+||+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999874
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.025 Score=52.42 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++++|||+|..|.+.|..|.+.|++|++||+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999999753
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.094 Score=54.27 Aligned_cols=33 Identities=27% Similarity=0.559 Sum_probs=27.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 278 (499)
.|+|||||.+|+-+|..++..| .+|.|+++.++
T Consensus 14 DviVIGGGitG~GiArDaA~RG--------------l~v~LvE~~D~ 46 (532)
T COG0578 14 DVIVIGGGITGAGIARDAAGRG--------------LKVALVEKGDL 46 (532)
T ss_pred CEEEECCchhhHHHHHHHHhCC--------------CeEEEEecCcc
Confidence 7999999999999999999866 66666665543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.1 Score=54.00 Aligned_cols=76 Identities=29% Similarity=0.372 Sum_probs=53.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~ 310 (499)
++|+|+|+|.+|..+|..|+..+ .+|+++++.. .+.+ +...+.|.+.|++++.+....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~-----~~~~-~~~~~~l~~~~~~~~~~~~~~-- 63 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKE-----EDQL-KEALEELGELGIELVLGEYPE-- 63 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc-----hHHH-HHHHHHHHhcCCEEEeCCcch--
Confidence 58999999999999999999988 8999998752 1222 223345677788877653221
Q ss_pred CCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 311 SQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
...-.+|+||.++|..++
T Consensus 64 --------~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 64 --------EFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred --------hHhhcCCEEEECCCCCCC
Confidence 001247888888888775
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.023 Score=50.94 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=27.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++|.|||.|+.||..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.052 Score=39.75 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=25.5
Q ss_pred EeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 235 VvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
|||+|.+|+-+|..|++.+ .+|+++|+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--------------SEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCc
Confidence 8999999999999999876 8999999874
|
... |
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.028 Score=55.76 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
..++..+.+.+++.|-+|.+. .|++|--+ +|.++||+++.+..|+--++.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCch
Confidence 367788888999999999998 88887432 799999999999777765543
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.032 Score=57.88 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=31.1
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|+|||.|.+|+++|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998765
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.039 Score=49.23 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.6
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|.|||+|.-|...|..++..|++|+|+|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999754
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.026 Score=53.87 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=62.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE----
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL---- 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 137 (499)
+-+-+|||||+.+|.||-.|+..|++|||.=|+--+ .|. ..++.+.+... ....++.|+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L----------rGF--Dqdmae~v~~~----m~~~Gikf~~~~vp 261 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL----------RGF--DQDMAELVAEH----MEERGIKFLRKTVP 261 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec----------ccc--cHHHHHHHHHH----HHHhCCceeecccc
Confidence 457899999999999999999999999987665211 010 11222222222 2235666655
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
.+|..++...-.|...+...+ ++.+-.||.++.|.|-.+..
T Consensus 262 ~~Veq~~~g~l~v~~k~t~t~------~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 262 ERVEQIDDGKLRVFYKNTNTG------EEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred eeeeeccCCcEEEEeeccccc------ccccchhhhhhhhhccccch
Confidence 356666554433333332221 23467899999999977654
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.21 Score=49.28 Aligned_cols=119 Identities=14% Similarity=0.218 Sum_probs=63.9
Q ss_pred CcEEEECCchHHHHHHHhccC----CCCeEEEEcCCCCc-----------ccccchhhhhccC-------------CCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHM-----------VFTPLLASTCVGT-------------LEFR 114 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~----~g~~V~lie~~~~~-----------~~~~~~~~~~~g~-------------~~~~ 114 (499)
..|.|||+|-++..+-+.|.. ...++.-|.|+..+ .|.|-......+. +..+
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Yk 267 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYK 267 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccc
Confidence 349999999999988887754 34567778887543 1222222111111 1111
Q ss_pred cccc-chhhhcc-----cccc-CCCeEEEE-EEEEEEECCCCE-EEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 115 SVAE-PIARIQP-----AISR-EPGSYFFL-SHCAGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 115 ~~~~-~~~~~~~-----~~~~-~~~~~~~~-~~v~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
-+.. .++++.. .+.. .+.+..+. .+|..+...... +.+..... ..++..++++|.||+|||-+...|
T Consensus 268 gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~----~~~~~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 268 GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHH----ETGELETVETDAVILATGYRRAVP 343 (436)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeec----cCCCceEEEeeEEEEecccccCCc
Confidence 1111 1122211 1111 23444443 477788776633 44433211 123457899999999999886655
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.18 Score=49.94 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=27.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||..|.-.|..|.+.+ .+|.+++..
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G--------------~~v~VlE~~ 34 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKG--------------IDVVVLESR 34 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcC--------------CeEEEEeec
Confidence 8999999999999999999877 777777764
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.1 Score=47.50 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=46.9
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|||||..|...+..|.+.+ .+|+++.+. +.+++. +...+..|.+....
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~~-----~~~~l~----~l~~~~~i~~~~~~---- 62 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISPE-----LTENLV----KLVEEGKIRWKQKE---- 62 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcCC-----CCHHHH----HHHhCCCEEEEecC----
Confidence 369999999999999999998876 899999642 233332 33333334442211
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+....--.+|+||.||+...
T Consensus 63 ------~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 63 ------FEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred ------CChhhcCCceEEEEcCCCHH
Confidence 11111235899999998765
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.052 Score=56.19 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|+|+|.+|+.+|..|++.|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35789999999999999999999999999999875
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.22 Score=48.03 Aligned_cols=109 Identities=27% Similarity=0.371 Sum_probs=69.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------------ 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~------------------------------ 280 (499)
.-+|||||.-|+..|...+.++ .++-+++.. .+-.
T Consensus 22 DylvIGgGSGGvasARrAa~~G--------------Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG 87 (478)
T KOG0405|consen 22 DYLVIGGGSGGVASARRAASHG--------------AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYG 87 (478)
T ss_pred ceEEEcCCcchhHHhHHHHhcC--------------ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcC
Confidence 6799999999999999998887 666666654 2211
Q ss_pred -------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCC--eEEECCCcE--EeeeEEEEcCCCCcc-
Q 010845 281 -------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQ--KLILNDGTE--VPYGLLVWSTGVGPS- 336 (499)
Q Consensus 281 -------~~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~--~v~~~~g~~--i~~D~vi~a~G~~p~- 336 (499)
.|+ .++....++.|.+.+|+++.++-.=+++. .|...||++ +.+..+++|+|-+|.
T Consensus 88 ~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 88 FPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPII 167 (478)
T ss_pred CccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCC
Confidence 011 01223334556778899998854444455 455567743 679999999999986
Q ss_pred hhcccCCCCCCCCCceee
Q 010845 337 TLVKSLDLPKSPGGRIGI 354 (499)
Q Consensus 337 ~~~~~~~l~~~~~G~i~v 354 (499)
|-+....+.+|.+|+...
T Consensus 168 PnIpG~E~gidSDgff~L 185 (478)
T KOG0405|consen 168 PNIPGAELGIDSDGFFDL 185 (478)
T ss_pred CCCCchhhccccccccch
Confidence 423223344455555443
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.055 Score=47.69 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+.+|||+|+|.+|..||..|...|++|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34799999999999999999999999999999764
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.16 Score=43.68 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=0.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeCC
Q 010845 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ 312 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~ 312 (499)
|+|+|+|.+|.-+|..|+..+ .+|+++.+ .. -.+.+++.|+.+....-......
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r-----------~~-~~~~~~~~g~~~~~~~~~~~~~~ 54 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSR-----------SP-RLEAIKEQGLTITGPDGDETVQP 54 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEES-----------HH-HHHHHHHHCEEEEETTEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEc-----------cc-cHHhhhheeEEEEecccceeccc
Q ss_pred eEEECCC--cEEeeeEEEEcC
Q 010845 313 KLILNDG--TEVPYGLLVWST 331 (499)
Q Consensus 313 ~v~~~~g--~~i~~D~vi~a~ 331 (499)
.....+. ..-++|+||+|+
T Consensus 55 ~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 55 PIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESSHGHHHSTESEEEE-S
T ss_pred ccccCcchhccCCCcEEEEEe
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.064 Score=45.35 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~ 95 (499)
+.++|+|||+|-+|-.++..|...|++ |+|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999987 99999863
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.06 Score=54.31 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=31.4
Q ss_pred CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 356 ~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
++|+++..||+|++|.+..+. --..|..+|..|+.|+...+.
T Consensus 323 ~~l~~k~~~~l~~AGqi~g~~----------Gy~ea~a~G~~Ag~n~~~~~~ 364 (436)
T PRK05335 323 PTLQLKKRPNLFFAGQITGVE----------GYVESAASGLLAGINAARLAL 364 (436)
T ss_pred hhccccCCCCEEeeeeecCch----------HHHHHHHHHHHHHHHHHHHhc
Confidence 445666679999999998531 123788999999999888775
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.12 Score=47.55 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=47.8
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|||||.+|..=+..|.+.+ .+||+|.+. +.+++. +......|+++....
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap~-----i~~el~----~l~~~~~i~~~~r~~--- 78 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSKK-----FSKEFL----DLKKYGNLKLIKGNY--- 78 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcCC-----CCHHHH----HHHhCCCEEEEeCCC---
Confidence 358999999999998888888776 899999653 334443 333344566654321
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+.+..-.+++||.||+-..
T Consensus 79 -------~~~dl~g~~LViaATdD~~ 97 (223)
T PRK05562 79 -------DKEFIKDKHLIVIATDDEK 97 (223)
T ss_pred -------ChHHhCCCcEEEECCCCHH
Confidence 1111234899999997543
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.063 Score=50.82 Aligned_cols=33 Identities=30% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+-+|+|||||.+|..+|+-+...|.+||++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 468999999999999999999999999999987
|
|
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.099 Score=51.52 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCC----CCeEEEEcCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPR 94 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~----g~~V~lie~~ 94 (499)
..+.+|||+|||+.|++.|..|... ..+|.|+|..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 3478999999999999999999753 4689999976
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.089 Score=48.27 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+.++|+|||||..++.=+..|.+.|.+||||.++-
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 456799999999999998999999999999998763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 499 | ||||
| 4g6g_A | 502 | Crystal Structure Of Ndh With Trt Length = 502 | 9e-57 | ||
| 4g9k_A | 471 | Structure Of The Ndi1 Protein From Saccharomyces Ce | 6e-56 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 2e-08 | ||
| 3hyw_A | 430 | 3-D X-Ray Structure Of The Sulfide:quinone Oxidored | 3e-08 | ||
| 3hyv_A | 430 | 3-D X-Ray Structure Of The Sulfide:quinone Oxidored | 3e-08 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 1e-05 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 1e-05 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 1e-05 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 2e-05 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 3e-05 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 5e-05 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 1e-04 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 1e-04 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 1e-04 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 1e-04 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 1e-04 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 2e-04 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 3e-04 | ||
| 1lvl_A | 458 | The Refined Structure Of Pseudomonas Putida Lipoami | 5e-04 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 6e-04 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 6e-04 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 7e-04 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 7e-04 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 8e-04 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 8e-04 |
| >pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt Length = 502 | Back alignment and structure |
|
| >pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces Cerevisiae Length = 471 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase Of The Hyperthermophilic Bacterium Aquifex Aeolicus In Complex With Decylubiquinone Length = 430 | Back alignment and structure |
|
| >pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase From The Hyperthermophilic Bacterium Aquifex Aeolicus Length = 430 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-46
Identities = 69/415 (16%), Positives = 138/415 (33%), Gaps = 45/415 (10%)
Query: 63 PRVVVLGSGWAGC----RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAE 118
+V+VLG + L + + + DV ++ F P L +G + +
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSRFSYFRPALPHVAIGVRDVDELKV 60
Query: 119 PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
++ P E G F ID + +V+ + YD +++ +
Sbjct: 61 DLSEALP----EKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAE-------EEYDYVIVGI 109
Query: 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLL----LNLMLSDVPGISEEEKSRLLHCV 234
GA +T + G + + E A ++R KL N+ + P +
Sbjct: 110 GAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 235 VVGGGP-TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V E+S ++ ++ + D +HVT+ E LS R +
Sbjct: 170 FVPNADSACEGPVFEMS-LMLHGYFKKK-GMLDKVHVTVFSPGEYLSDLSPNSRKAVASI 227
Query: 294 LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK-SLDLPKSPGGR 351
++ G++LV +K++ +++ G +P + + + +K S GG
Sbjct: 228 YNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGF 287
Query: 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL-FSLLNRIGKAGG 410
I D + +V+AVGD + + K +A G+ L NR+ G
Sbjct: 288 IPTDLNMVSIKYDNVYAVGDANSM--TVPKL-----GYLAVMTGRIAAQHLANRL---GV 337
Query: 411 GRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVW 465
+ +A V ++ + G + +
Sbjct: 338 PTKVDKYYP---------TIVCVADNPYEGYAVSVKDDTWYGGTVSIADPAAVNH 383
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-44
Identities = 66/456 (14%), Positives = 134/456 (29%), Gaps = 67/456 (14%)
Query: 60 NEKPRVVVLGSGWAGC----RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
VV+LG+G G + + + + +V +S ++ F P VG E
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDYFQFVPSNPWVGVGWKERDD 60
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
+A PI + R+ G +F ID + + + YD L+
Sbjct: 61 IAFPIRHY---VERK-GIHFIAQSAEQIDAEAQNITLADGN-----------TVHYDYLM 105
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
IA G + + + G + ++ + R + +
Sbjct: 106 IATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAE---------YQALLREPGPIVIG 156
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR----LRHYAT 291
G + + E + I+ ++ T I + + + + T
Sbjct: 157 AMAGASCFGPAYEYA-MIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILT 215
Query: 292 TQLSKSGVRLVRG-IVKDVDSQKLILNDGT---------EVPYGLLVWSTGVGPSTLVKS 341
L + G+ V V+ K+ + +P + V
Sbjct: 216 KGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAG 275
Query: 342 LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK---TVLPALAQVAERQGKYL 398
++ +PGG + +DE R ++FA G T P + E
Sbjct: 276 VEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAA 335
Query: 399 -FSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKA-LVDLRQNKESKGLSL 456
++ + + + + + A +G A + L Q K K
Sbjct: 336 VHNIKADL-----------EGRKGEQTMGTWNAVAFADMGDRGAAFIALPQLKPRK---- 380
Query: 457 AGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVF 492
++ W +L +V + F + + F
Sbjct: 381 VDVFAYGRW--VHLAKVA-FEKYFIRKMKMGVSEPF 413
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 9e-33
Identities = 47/259 (18%), Positives = 100/259 (38%), Gaps = 44/259 (16%)
Query: 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHH 202
I+ + V +V + +T E +F+ SYDKL+++ GA A++ G + LR +
Sbjct: 84 INDERQTV---SVLN-RKTNE--QFEESYDKLILSPGASANSLGFES--DITFTLRNLED 135
Query: 203 AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRY 261
I + + + + +VVG G +E + + R
Sbjct: 136 TDAIDQFI-------------KANQVD--KVLVVGAGYVSLE----VLENLYERG----- 171
Query: 262 SHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDG 319
+H TLI +++I D + +L K + + ++ ++ G
Sbjct: 172 ------LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSG 225
Query: 320 TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLE 377
Y +++ G P++ ++S ++ G I +++ +V +++A+GD + +
Sbjct: 226 KVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYR 284
Query: 378 STGKTVLPALAQVAERQGK 396
LA A R
Sbjct: 285 HVDLPASVPLAWGAHRAAS 303
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 3e-31
Identities = 68/268 (25%), Positives = 112/268 (41%), Gaps = 51/268 (19%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
ID H V + + LRT E + + YDKLV+ALG++A+ + G+ T + +
Sbjct: 91 AIDRAAHTV---EIEN-LRTGE--RRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNL 144
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260
A+ ++ + + V+VGGG G+E + L+D
Sbjct: 145 DEAEFVQHAI-------------SAGEVS--KAVIVGGGFIGLEMAVSLAD--------- 180
Query: 261 YSHVKDYIHVTLIE-ANEILSSFDDR-LRHYATTQLSKSGVRL-----VRGIVKDVDSQK 313
I T++E A++I+ F + L L K+ V + V + +
Sbjct: 181 ----MWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA 236
Query: 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
++ D + L++ + GV P+T L + L P G I +D +R S D+FA GDC
Sbjct: 237 RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRT-SDPDIFAGGDC 295
Query: 373 SGYLES----TGKTVLPALAQVAERQGK 396
TGK L +A RQG+
Sbjct: 296 V---TIPNLVTGKPGFFPLGSMANRQGR 320
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-31
Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 50/267 (18%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK--ENATFLRE 199
I+ + + T+ + + T E + +YD L+++ GA+ I G++ + LR
Sbjct: 118 KINKEEKTI---TIKN-VTTNE--TYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRN 171
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVR 258
V I+ + +E+K R H V+GGG GVE + + R
Sbjct: 172 VPDTDRIKAYI-------------DEKKPR--HATVIGGGFIGVE----MVENLRERG-- 210
Query: 259 QRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
I VTL+E AN+++ D + Y + V L V + ++
Sbjct: 211 ---------IEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA 259
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
+ L G+ + +L+ + GV P + L K L G I ++E + S ++A+GD
Sbjct: 260 VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQT-SDPHIYAIGD 318
Query: 372 C-SGYLESTGKTVLPALAQVAERQGKY 397
T + LA A RQG+
Sbjct: 319 AIEVKDFVTETETMIPLAWPANRQGRM 345
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 6e-31
Identities = 53/267 (19%), Positives = 104/267 (38%), Gaps = 54/267 (20%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+DT+ +V +T + F+ SYD+L+IA G G + L+ +
Sbjct: 118 KVDTEKKIV---YAEH-TKTKD--VFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTI 171
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A+ I + L E K ++GGG G+E +++ F+
Sbjct: 172 PDAERILKTL-------------ETNKVE--DVTIIGGGAIGLE----MAETFVELG--- 209
Query: 260 RYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQK 313
V +IE + I + +D + Y + K + + V+ + + +
Sbjct: 210 --------KKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVE 260
Query: 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
+ D L++ S GV P+T ++ ++ + G I ++ +++ +VQDV+A GDC
Sbjct: 261 AVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQT-NVQDVYAAGDC 319
Query: 373 SGYLES----TGKTVLPALAQVAERQG 395
+ + A +QG
Sbjct: 320 A---THYHVIKEIHDHIPIGTTANKQG 343
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 3e-28
Identities = 64/285 (22%), Positives = 106/285 (37%), Gaps = 66/285 (23%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
ID +V TV L +++ SYD L+++ GA I GV LR +
Sbjct: 83 AIDRAAKLV---TVRR-LLDGS--EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNI 136
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
I + + + + + H VVGGG G+ E+ +
Sbjct: 137 PDMDRILQTI---------------QMNNVEHATVVGGGFIGL----EMMESLHHLG--- 174
Query: 260 RYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ- 312
I TL+E A+++++ D + +A + GV L + + V +
Sbjct: 175 --------IKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV 226
Query: 313 ------------------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIG 353
L L++G + LL+ + GV P T L + L G I
Sbjct: 227 ASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIK 286
Query: 354 IDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGKY 397
++ ++ S ++AVGD TG+ L LA A RQG+
Sbjct: 287 VNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRM 330
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 9e-28
Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 60/268 (22%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+DT V + +D LV A GA I GV +
Sbjct: 84 EVDTGYVRV---RENGG-------EKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLP 133
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A IR + EK ++ + V++GGG G+E +++ F +
Sbjct: 134 PDALAIREYM---------------EKYKVENVVIIGGGYIGIE----MAEAFAAQG--- 171
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+VT+I +L SFD + +L K V L I + +
Sbjct: 172 --------KNVTMIVRGERVLRRSFDKEVTDILEEKLKK-HVNLRLQEITMKIEGE-ERV 221
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
+ ++ D E L++ +TG+ P+ L K L + G I +E ++ SV++V+A GD
Sbjct: 222 EKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQT-SVENVYAAGD 280
Query: 372 CSGYLES----TGKTVLPALAQVAERQG 395
+ E+ TG+ V LA + G
Sbjct: 281 VA---ETRHVITGRRVWVPLAPAGNKMG 305
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 9e-28
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 50/267 (18%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
I H V TV D L + E + +YDKL+I+ GA I G +N +R
Sbjct: 81 AIQPKEHQV---TVKD-LVSGE--ERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGR 134
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A ++++K + + + VV+G G G+E ++ F
Sbjct: 135 QWAIKLKQKT-------------VDPEVN--NVVVIGSGYIGIE----AAEAFAKAG--- 172
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
VT+I+ + L D T ++ + + + V D
Sbjct: 173 --------KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD-GRV 223
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
+ ++ D L+V + GV P+T +K L P G I DE++R S DVFAVGD
Sbjct: 224 QKVVTDKNAYDADLVVVAVGVRPNTAWLKG-TLELHPNGLIKTDEYMRT-SEPDVFAVGD 281
Query: 372 C-SGYLESTGKTVLPALAQVAERQGKY 397
V ALA A +QG++
Sbjct: 282 ATLIKYNPADTEVNIALATNARKQGRF 308
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 56/267 (20%), Positives = 99/267 (37%), Gaps = 51/267 (19%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+D + + V D L T E + +YDKL++ G++ + I G+ +
Sbjct: 83 NVDPETKTI---KVKD-LITNE--EKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNY 136
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
+ A+++ + K++ ++G G G E L++ + ++
Sbjct: 137 NDAKKLFEEA---------------PKAK--TITIIGSGYIGAE----LAEAYSNQN--- 172
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+V LI+ +L FD GV L V + D
Sbjct: 173 --------YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEI 224
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
DG E+ + + G P+T L+K + G I DE++ S +D+FA GD
Sbjct: 225 ITKTLDGKEIKSDIAILCIGFRPNTELLKG-KVAMLDNGAIITDEYMHS-SNRDIFAAGD 282
Query: 372 C-SGYLESTGKTVLPALAQVAERQGKY 397
+ + T LA A RQG+
Sbjct: 283 SAAVHYNPTNSNAYIPLATNAVRQGRL 309
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 55/265 (20%), Positives = 92/265 (34%), Gaps = 54/265 (20%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+D +N ++ ++ SYDKL++A GA + I G E + +
Sbjct: 83 AMDVENQLIAWTRKEEQ--------QWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFL 134
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A L E S+ V+G GP G+E D +
Sbjct: 135 SGALAAVPLL---------------ENSQ--TVAVIGAGPIGME----AIDFLVKMK--- 170
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
V + E +L FD + L K V V GI + +
Sbjct: 171 --------KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANG 221
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
++ E+ +++ + P + + ++ I +D +L+ SV +VFA+GD
Sbjct: 222 IVLETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQT-SVPNVFAIGD 279
Query: 372 C-SGYLESTGKTVLPALAQVAERQG 395
C S E +T L A R G
Sbjct: 280 CISVMNEPVAETFYAPLVNNAVRTG 304
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-26
Identities = 59/276 (21%), Positives = 102/276 (36%), Gaps = 63/276 (22%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK---------- 191
ID D V + +YDKL+ A G++ I G +
Sbjct: 117 SIDYDAKTVTALV-DGK-------NHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEA 168
Query: 192 --ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249
EN F++ ++ ++ KL E + VVG G GVE L
Sbjct: 169 TLENLQFVKLYQNSADVIAKL---------------ENKDIKRVAVVGAGYIGVE----L 209
Query: 250 SD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL----- 301
++ F + V LI+ + L+ +D L + + G++L
Sbjct: 210 AEAFQRKG-----------KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGET 258
Query: 302 VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRV 360
V+ + + + I+ D E +++ + G P+T L + G +++
Sbjct: 259 VKEVAGN-GKVEKIITDKNEYDVDMVILAVGFRPNTTLGNG-KIDLFRNGAFLVNKRQET 316
Query: 361 PSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQG 395
S+ V+A+GDC + Y +T T ALA A R G
Sbjct: 317 -SIPGVYAIGDCATIYDNATRDTNYIALASNAVRTG 351
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 78/349 (22%), Positives = 133/349 (38%), Gaps = 76/349 (21%)
Query: 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVA 117
+ +VV++G+G G L K + Y+V + ++ P+L+ G +
Sbjct: 5 HHHGSKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIP----R 59
Query: 118 EPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+ R+ G L+ A ID VV E ++ YD LV+
Sbjct: 60 NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEK------------GEVPYDTLVL 107
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236
A GA A I G KE LR + A I+ + E S +++
Sbjct: 108 ATGARAREPQIKG-KEYLLTLRTIFDADRIKESI---------------ENSG--EAIII 149
Query: 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296
GGG G+E +G L++ V LI + D+ L + L +
Sbjct: 150 GGGFIGLELAGNLAEAGYH--------------VKLIHRGAMFLGLDEELSNMIKDMLEE 195
Query: 297 SGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG-- 349
+GV+ + ++ +L + + + + + G+ P+ DL + G
Sbjct: 196 TGVKFFLNSELLEANEEG-----VLTNSGFIEGKVKICAIGIVPNV-----DLARRSGIH 245
Query: 350 -GR-IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 396
GR I ID+ R S +DV+A+GDC+ E +G A+ A Q +
Sbjct: 246 TGRGILIDDNFRT-SAKDVYAIGDCA---EYSGIIA--GTAKAAMEQAR 288
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 9e-17
Identities = 62/300 (20%), Positives = 105/300 (35%), Gaps = 71/300 (23%)
Query: 120 IARIQPAISREPGSY-FFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKIS 170
IA A+S SY + G+ DNH V V + +
Sbjct: 95 IAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTV---LVRESADPNSAVLETLD 151
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
+ +++A G+ GI G + E L + P
Sbjct: 152 TEYILLATGSWPQHLGIEG-DDLCITSNEA-------------FYLDEAPK--------- 188
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHY 289
+ VGGG +EF+G + + R V L + IL FD LR
Sbjct: 189 -RALCVGGGYISIEFAGIFNAYKARGG-----------QVDLAYRGDMILRGFDSELRKQ 236
Query: 290 ATTQLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLD 343
T QL +G+ + + K+ D + + G E Y +++ + G P + ++L
Sbjct: 237 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS--QTLQ 294
Query: 344 LPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
L K + G I +D + + +V +++A+GD T + L VA +G
Sbjct: 295 LEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDV------TDR---VMLTPVAINEGAAF 344
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 65/408 (15%), Positives = 136/408 (33%), Gaps = 84/408 (20%)
Query: 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVA 117
++ ++++LG+G AG K D+ ++ ++ + P L
Sbjct: 6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSI---- 61
Query: 118 EPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+ I + + S A ID +N +V ++ KI Y+KL+I
Sbjct: 62 DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGE-----------KIKYEKLII 110
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236
A G+ A+ + + L A +I+ + + ++
Sbjct: 111 ASGSIANKIKVPH-ADEIFSLYSYDDALKIKDEC---------------KNKG--KAFII 152
Query: 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL--RHYATTQL 294
GGG G+E + + D ++ + R QL
Sbjct: 153 GGGILGIELAQAIIDSGTP--------------ASIGI-------ILEYPLER-----QL 186
Query: 295 SKSGVRLVRGIVKD----VDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPG 349
+ G ++ + + + G + ++ + GV P+ +K ++
Sbjct: 187 DRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIRSSCVITAVGVKPNLDFIKDTEIA--SK 244
Query: 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ-------VAERQGKYLFSLL 402
I +++ + S++D++A GD + + + A Q Y +
Sbjct: 245 RGILVNDHMET-SIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDASYSEIIP 303
Query: 403 NRIGKAGGGRANSAKDMELGDP-FVYRHLGSMATIGRYKALVDLRQNK 449
+ I K G S D+E P V+R +Y + L++NK
Sbjct: 304 SPILKVSGISIISCGDIENNKPSKVFRSTQE----DKYIVCM-LKENK 346
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 64/304 (21%), Positives = 108/304 (35%), Gaps = 79/304 (25%)
Query: 120 IARIQPAISREPGSY-FFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKIS 170
IA A+ SY + G+D +VV V + K ++
Sbjct: 99 IAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVV---VVRETADPKSAVKERLQ 155
Query: 171 YDKLVIALGAEASTFGI----HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226
D +++A G+ I H + N F L + P
Sbjct: 156 ADHILLATGSWPQMPAIPGIEHCISSNEAF------------------YLPEPPR----- 192
Query: 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDR 285
+ VGGG VEF+G + + + VTL N IL FD+
Sbjct: 193 -----RVLTVGGGFISVEFAGIFNAYKPPGGK-----------VTLCYRNNLILRGFDET 236
Query: 286 LRHYATTQLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLV 339
+R T QL+ +G+ ++ + + D K + G + +++ + G P T
Sbjct: 237 IREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT-- 294
Query: 340 KSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 394
L L +P G + +DE+ R +V +++A+GD T + L VA +
Sbjct: 295 NDLQLGNVGVKLTPKGGVQVDEFSRT-NVPNIYAIGDI------TDR---LMLTPVAINE 344
Query: 395 GKYL 398
G L
Sbjct: 345 GAAL 348
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 7e-15
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
V+VGGG GVEF+ VK TL+ + IL +FD LR
Sbjct: 195 VIVGGGYIGVEFANIFHGL----------GVK----TTLLHRGDLILRNFDYDLRQLLND 240
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK- 346
+ G+ ++ + + ++L +G + ++ +TG P+T L L +
Sbjct: 241 AMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT--TGLGLERA 298
Query: 347 ----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
+ G + +DE + +V ++AVGD TG L VA
Sbjct: 299 GVKVNEFGAVVVDEKMTT-NVSHIWAVGDV------TGH---IQLTPVAIHDAMCF 344
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 56/247 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG-----VKENAT 195
+D +++V + +I+Y+K +IA G + VK T
Sbjct: 114 VQLDVRDNMVKLNDGS-----------QITYEKCLIATGGTPRSLSAIDRAGAEVKSRTT 162
Query: 196 FLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255
R++ + + + E + ++GGG G E + L R
Sbjct: 163 LFRKIGDFRSLEKIS--------------REVKSI---TIIGGGFLGSELACALG----R 201
Query: 256 DVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKD 308
R V + + + L ++ ++ + GV++ V+ +
Sbjct: 202 KARAL------GTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS 255
Query: 309 VDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKS--LDLPKSPGGRIGIDEWLRVPSVQD 365
+ L DG +V +V + G+ P+ L K+ L++ GG ++ L+ + +
Sbjct: 256 SGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG-FRVNAELQ--ARSN 312
Query: 366 VFAVGDC 372
++ GD
Sbjct: 313 IWVAGDA 319
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 38/177 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
VVG G GVE G ++ K L E + L SFD +
Sbjct: 171 AVVGAGYIGVELGGVINGL----------GAK----THLFEMFDAPLPSFDPMISETLVE 216
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
++ G +L +VK+ D + L DG L+W+ G P+ +++L
Sbjct: 217 VMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN--DNINLEA 274
Query: 347 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
+ G I +D++ +++ ++AVGD TG L VA G+ L
Sbjct: 275 AGVKTNEKGYIVVDKYQNT-NIEGIYAVGDN------TGA---VELTPVAVAAGRRL 321
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 64/336 (19%), Positives = 119/336 (35%), Gaps = 82/336 (24%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGI---DTSLYDVVCVSPRNHMVFT---------PLLASTC 107
+E+ +V++G+G AG L + D ++ + T P+L++
Sbjct: 2 SERAPLVIIGTGLAGYNLAREWRKLDGE-TPLL--------MITADDGRSYSKPMLSTGF 52
Query: 108 VGTLEFRSVAEPIARIQPAISREPGSYFFLSHC--AGIDTDNHVVHCETVTDELRTLEPW 165
+ A+ +A +P E + L+H GID + +
Sbjct: 53 SKNKD----ADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEE--------- 99
Query: 166 KFKISYDKLVIALGAEASTFGIHGV-KENATFLREVHHAQEIRRKLLLNLMLSDVPGISE 224
+ Y LV+A GAE + G ++ + ++ R+
Sbjct: 100 ---VRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAA-------------- 142
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSF 282
R +++G G G EF+ +LS + ++ E +
Sbjct: 143 -AGKR--RVLLLGAGLIGCEFANDLSSGGY--------------QLDVVAPCEQVMPGLL 185
Query: 283 DDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
L GVR + + K + + L+DG +P L+V + G+ P T
Sbjct: 186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245
Query: 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
L + L + G I +D LR S +++A+GDC
Sbjct: 246 ELAFAAGLAVNRG--IVVDRSLRT-SHANIYALGDC 278
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 7e-14
Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 38/177 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
++ GGG VEF+ VK TLI EILS FD +R
Sbjct: 174 LIAGGGYIAVEFANIFHGL----------GVK----TTLIYRGKEILSRFDQDMRRGLHA 219
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
+ + G+R++ + D D +++ E+ ++ + G P+T L L
Sbjct: 220 AMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNT--NGLGLEA 277
Query: 347 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
+ G I +D + R S ++A+GD T + L VA +
Sbjct: 278 AGVRTNELGAIIVDAFSRT-STPGIYALGDV------TDR---VQLTPVAIHEAMCF 324
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 49/241 (20%), Positives = 85/241 (35%), Gaps = 54/241 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
+D + + T +S D +VIA G+ A T + G + LR
Sbjct: 81 TALDVQTRTISLDDGT-----------TLSADAIVIATGSRARTMALPGSQLPGVVTLRT 129
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
Q +R +RL ++VGGG G E + R+
Sbjct: 130 YGDVQVLRDSW--------------TSATRL---LIVGGGLIGCEVATTA--------RK 164
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+ VT++EA + L R+ + L++ GV++ V G + +
Sbjct: 165 L------GLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLE 218
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
+++ +DG + G P+ L + L G + +D + VFAVGD
Sbjct: 219 QVMASDGRSFVADSALICVGAEPADQLARQAGLACDRG--VIVDHCGAT-LAKGVFAVGD 275
Query: 372 C 372
Sbjct: 276 V 276
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 4e-13
Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 41/179 (22%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
VVVG G G+E +G + L+ +L FD+ +++ T
Sbjct: 189 VVVGAGYIGIELAGVFHGL----------GSE----THLVIRGETVLRKFDECIQNTITD 234
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKL--ILNDGTEV-PYGLLVWSTGVGPSTLVKSLDL 344
K G+ + + + K+V++ KL +ND + L+W+ G +
Sbjct: 235 HYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL---GMGS 291
Query: 345 PK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
+ +I DE+ +V +++++GD GK L VA G+ L
Sbjct: 292 ENVGIKLNSHDQIIADEYQNT-NVPNIYSLGDV------VGK---VELTPVAIAAGRKL 340
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 8e-13
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 38/177 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
++G G G+E +G L F + VT++ + +L FD L
Sbjct: 170 AIIGAGYIGIELAGLLRSF----------GSE----VTVVALEDRLLFQFDPLLSATLAE 215
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPSTLVKSLDLPK 346
+ G+ + +D L+ DGT + + ++W+ G P+T + L L
Sbjct: 216 NMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT--RDLGLEA 273
Query: 347 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
G + D + +V V+A+GD TG+ L VA G+ L
Sbjct: 274 AGIEVQSNGMVPTDAYQNT-NVPGVYALGDI------TGR---DQLTPVAIAAGRRL 320
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 52/237 (21%), Positives = 82/237 (34%), Gaps = 50/237 (21%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
D H V + Y LV+A GA LR
Sbjct: 83 QSFDPQAHTVALSDGR-----------TLPYGTLVLATGAAPRALPTLQGATMPVHTLRT 131
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
+ A+ I+ L +SRL ++VGGG G+E + R
Sbjct: 132 LEDARRIQAGL--------------RPQSRL---LIVGGGVIGLELAATA--------RT 166
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLIL 316
+HV+L+E L + L + + GV L V ++L
Sbjct: 167 A------GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLL 220
Query: 317 NDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
+DGT + ++V GV + L ++ L G I +D + R + DV+A+GD
Sbjct: 221 DDGTRIAADMVVVGIGVLANDALARAAGLACDDG--IFVDAYGRT-TCPDVYALGDV 274
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 54/242 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
+D H V + I Y KL+ A G + G +R
Sbjct: 89 VSLDPAAHTVKLGDGS-----------AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRT 137
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
A + +L + ++ + VV+GGG G+E + L +
Sbjct: 138 KEDADRLMAEL--------------DAGAK--NAVVIGGGYIGLEAAAVL--------TK 173
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDS- 311
++VTL+EA + + L + + GV L + I D
Sbjct: 174 F------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV 227
Query: 312 QKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370
+ + DG+ +P +++ G+ P + S G + +DE+ R S+ DV+A+G
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNG--VDVDEFCRT-SLTDVYAIG 284
Query: 371 DC 372
DC
Sbjct: 285 DC 286
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 55/242 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
ID + + + T I Y LV+A GA + + +LR
Sbjct: 80 VSIDREGRKLLLASGT-----------AIEYGHLVLATGARNRMLDVPNASLPDVLYLRT 128
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
+ ++ +R+++ +K + VV+G G G+EF+ R
Sbjct: 129 LDESEVLRQRM--------------PDKKHV---VVIGAGFIGLEFAATA--------RA 163
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDS- 311
+ + V ++E + + Y + S +G+R+ I + D
Sbjct: 164 K------GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRV 217
Query: 312 QKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370
++L+DG +P L+V GV P+ + + LP + G I +D+ L S + A+G
Sbjct: 218 TGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG--IIVDQQLLT-SDPHISAIG 274
Query: 371 DC 372
DC
Sbjct: 275 DC 276
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 48/307 (15%), Positives = 92/307 (29%), Gaps = 83/307 (27%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
I +Q I Y + H + + + S
Sbjct: 122 IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKI-------YSA 174
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
++ +IA G GI G KE ++ L PG
Sbjct: 175 ERFLIATGERPRYLGIPGDKEYCISSDDL-------------FSLPYCPG---------- 211
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+VVG +E +G L+ + VT++ + +L FD + +
Sbjct: 212 KTLVVGASYVALECAGFLAGI----------GLD----VTVMVRSILLRGFDQDMANKIG 257
Query: 292 TQLSKSGVRLVRG-----IVKDVDSQKLIL---------NDGTEVPYGLLVWSTGVGPST 337
+ + G++ +R + + L + E Y ++ + G T
Sbjct: 258 EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT 317
Query: 338 LVKSLDLPK------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA 391
+ + L G+I + + + +V ++A+GD K L VA
Sbjct: 318 --RKIGLETVGVKINEKTGKIPVTDEEQ-TNVPYIYAIGDI-----LEDK---VELTPVA 366
Query: 392 ERQGKYL 398
+ G+ L
Sbjct: 367 IQAGRLL 373
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 9e-12
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 46/185 (24%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
V+VG G VE +G LS K +L+ +++L SFD + T
Sbjct: 191 VIVGAGYIAVEMAGILSAL----------GSK----TSLMIRHDKVLRSFDSMISTNCTE 236
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTE---------VPYGLLVWSTGVGPSTL 338
+L +GV +++ + K + ++ + L+W+ G P+T
Sbjct: 237 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT- 295
Query: 339 VKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 393
K L L K G I +DE+ +V+ ++AVGD GK L VA
Sbjct: 296 -KDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDV------CGK---ALLTPVAIA 344
Query: 394 QGKYL 398
G+ L
Sbjct: 345 AGRKL 349
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 60/247 (24%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG----VKENATF 196
I+ D V + YD+LV+A G + N +
Sbjct: 84 TAINRDRQQVILSDGR-----------ALDYDRLVLATGGRPRPLPVASGAVGKANNFRY 132
Query: 197 LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256
LR + A+ IRR+L +RL VV+GGG G+E + + I +
Sbjct: 133 LRTLEDAECIRRQL--------------IADNRL---VVIGGGYIGLEVA---ATAIKAN 172
Query: 257 VRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDV 309
+ HVTL++ +L + + ++GV + V G
Sbjct: 173 M-----------HVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMST 221
Query: 310 DSQK---LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQD 365
D QK ++ DGT +P L++ G+ P+ L + L G I I+E ++ S
Sbjct: 222 DQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNG--IVINEHMQT-SDPL 278
Query: 366 VFAVGDC 372
+ AVGDC
Sbjct: 279 IMAVGDC 285
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 55/302 (18%), Positives = 97/302 (32%), Gaps = 79/302 (26%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+ +Q I ++ D+H + + + E I+
Sbjct: 100 VQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERT--------ITA 151
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
VIA+G I G E ++ L PG
Sbjct: 152 QTFVIAVGGRPRYPDIPGAVEYGITSDDL-------------FSLDREPG---------- 188
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+VVG G G+E +G L + T++ + +L FD ++
Sbjct: 189 KTLVVGAGYIGLECAGFLKGL----------GYE----PTVMVRSIVLRGFDQQMAELVA 234
Query: 292 TQLSKSGVRLVRG-----IVKDVDSQKLI------LNDGTEVPYGLLVWSTGVGPSTLVK 340
+ + G+ +R + K D + L+ + +E Y ++W+ G
Sbjct: 235 ASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLV--D 292
Query: 341 SLDLP----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 396
L+LP +I +D +V +++AVGD GK P L VA G+
Sbjct: 293 DLNLPNAGVTVQKDKIPVDSQEAT-NVANIYAVGDI-----IYGK---PELTPVAVLAGR 343
Query: 397 YL 398
L
Sbjct: 344 LL 345
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 49/310 (15%), Positives = 93/310 (30%), Gaps = 86/310 (27%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+ +Q I Y + H V ++ I+
Sbjct: 198 VEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEV-------QITDKNQKVSTITG 250
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
+K+++A G I G E ++ L PG
Sbjct: 251 NKIILATGERPKYPEIPGAVEYGITSDDL-------------FSLPYFPG---------- 287
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+V+G +E +G L+ VT++ + +L FD ++
Sbjct: 288 KTLVIGASYVALECAGFLASL----------GGD----VTVMVRSILLRGFDQQMAEKVG 333
Query: 292 TQLSKSGVRLVRG-------------IVKDVDSQKLI---LNDGT--EVPYGLLVWSTGV 333
+ GV+ + + L+ DG E + ++++ G
Sbjct: 334 DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR 393
Query: 334 GPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALA 388
P + GR+ + + +V +V+A+GD + GK P L
Sbjct: 394 EPQL--SKVLCETVGVKLDKNGRVVCTDDEQT-TVSNVYAIGDI-----NAGK---PQLT 442
Query: 389 QVAERQGKYL 398
VA + G+YL
Sbjct: 443 PVAIQAGRYL 452
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 53/362 (14%), Positives = 95/362 (26%), Gaps = 73/362 (20%)
Query: 62 KPRVVVLGSGWAGC-------RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV--GTLE 112
+VVV+G G G I +V + P L S V G +
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSI-----EVTLIEPNTDYYTCYL--SNEVIGGDRK 54
Query: 113 FRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
S+ ++ G GID D +V + YD
Sbjct: 55 LESIKHGYDGLRA-----HGIQVVHDSATGIDPDKKLVKTAGGA-----------EFGYD 98
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHH------AQEIRRKLLLNLMLSDVPGISEEE 226
+ V+A G E I G E A + H +R++L +
Sbjct: 99 RCVVAPGIELIYDKIEGYSEEAAA-KLPHAWKAGEQTAILRKQL-----------EDMAD 146
Query: 227 KSRLLHCVVVGG---GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSF 282
++ P E + +++ ++ + + S F
Sbjct: 147 GGTVVIAPPAAPFRCPPGPYERASQVAYYLKA------HKPMSKVIILDSSQTFSKQSQF 200
Query: 283 DDRLRHYATTQLSKSGVRLV---RGIVKDVDSQKLIL--NDGTEVPYGLLVWSTGVGPST 337
+ + V VD ++++ G E ++
Sbjct: 201 SKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIPPQRAGK 260
Query: 338 LVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 396
+ + L G +D + + +GD S K+ A QGK
Sbjct: 261 IAQIAGLTN-DAGWCPVDIKTFESSIHKGIHVIGDASIAN-PMPKS-----GYSANSQGK 313
Query: 397 YL 398
Sbjct: 314 VA 315
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 49/244 (20%), Positives = 80/244 (32%), Gaps = 69/244 (28%)
Query: 169 ISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN---LMLSDVPGISEE 225
+ +D+ ++A GA + I G+KE + L +P
Sbjct: 137 VMFDRCLVATGASPAVPPIPGLKE---------------SPYWTSTEALASDTIPE---- 177
Query: 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH--VKDYIHVTLIEANEILSSFD 283
RL V+G +E + Q ++ K VT++ N + D
Sbjct: 178 ---RL---AVIGSSVVALELA------------QAFARLGSK----VTVLARNTLFFRED 215
Query: 284 DRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
+ T G+ + + L G LLV +TG P+T
Sbjct: 216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLV-ATGRTPNT- 273
Query: 339 VKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 393
+SL L + G I ID+ +R S +++A GDC+ P VA
Sbjct: 274 -RSLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTD---------QPQFVYVAAA 322
Query: 394 QGKY 397
G
Sbjct: 323 AGTR 326
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 48/244 (19%), Positives = 79/244 (32%), Gaps = 57/244 (23%)
Query: 168 KISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEK 227
L++A+GA T + GV L PG
Sbjct: 172 VFKAKNLILAVGAGPGTLDVPGVNAKGV-FDHATLV----------EELDYEPGS----- 215
Query: 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRL 286
VVVGG T VE+ + + ++ + D+
Sbjct: 216 ----TVVVVGGSKTAVEYGCFFNAT----------GRR----TVMLVRTEPLKLIKDNET 257
Query: 287 RHYATTQLSKSGVRL-----VRGIVKDVDSQKLIL-----NDGTEVPYGLLVWSTGVGPS 336
R Y ++ + G+ + V I +D + + + N + + G P
Sbjct: 258 RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR 317
Query: 337 T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 394
+ L K L L P G + ++E+L+ SV +V+AVGD G P A +
Sbjct: 318 SAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDL------IGG---PMEMFKARKS 367
Query: 395 GKYL 398
G Y
Sbjct: 368 GCYA 371
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 52/305 (17%), Positives = 95/305 (31%), Gaps = 81/305 (26%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+Q + + + D H V +S
Sbjct: 96 AEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV-------RGVDKGGKATLLSA 148
Query: 172 DKLVIALGAEASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
+ +VIA G + G E ++ L + PG
Sbjct: 149 EHIVIATGGRPRYPTQVKGALEYGITSDDI-------------FWLKESPG--------- 186
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290
+VVG +E +G L+ + T++ + L FD ++
Sbjct: 187 -KTLVVGASYVALECAGFLTGI----------GLD----TTVMMRSIPLRGFDQQMSSLV 231
Query: 291 TTQLSKSGVRLVRG-----IVKDVDSQ-KLILNDGT-----EVPYGLLVWSTGVGPSTLV 339
T + G + ++G I K +Q ++ D + ++W+ G P T
Sbjct: 232 TEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET-- 289
Query: 340 KSLDLPK------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 393
++L+L K +I +D SV ++A+GD + G+ P L A +
Sbjct: 290 RTLNLEKAGISTNPKNQKIIVDAQEAT-SVPHIYAIGDVAE-----GR---PELTPTAIK 340
Query: 394 QGKYL 398
GK L
Sbjct: 341 AGKLL 345
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 54/202 (26%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
+VG G VE + + + N IL FD+ + +
Sbjct: 180 GIVGSGYIAVELINVIKRL----------GID----SYIFARGNRILRKFDESVINVLEN 225
Query: 293 QLSKSGVRL-----VRGIVKDVDSQKLI-LNDGTEV-PYGLLVWSTGVGPSTLVKSLDLP 345
+ K+ + + V I K D I L+DG + +++ G P T ++L L
Sbjct: 226 DMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT--ENLKLE 283
Query: 346 ----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL----------------- 384
++ I +DE R SV +++AVGDC +S L
Sbjct: 284 KLNVETNNNYIVVDENQRT-SVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKEN 342
Query: 385 --------PALAQVAERQGKYL 398
L VA G+ L
Sbjct: 343 VTEDIFYNVQLTPVAINAGRLL 364
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 43/194 (22%), Positives = 67/194 (34%), Gaps = 47/194 (24%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L +P H +VVG G TG EF ++ V VT++
Sbjct: 176 YDLDALPD----------HLIVVGSGVTGAEFVDAYTEL----------GVP----VTVV 211
Query: 274 E-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLL 327
+ +L D ++ GVRL + + + + DG V
Sbjct: 212 ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHA 271
Query: 328 VWSTGVGPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT 382
+ + G P+T L L + G + +D R ++A GDC+G
Sbjct: 272 LMTIGSVPNT--SGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTG-------- 320
Query: 383 VLPALAQVAERQGK 396
L LA VA QG+
Sbjct: 321 -LLPLASVAAMQGR 333
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-10
Identities = 21/193 (10%), Positives = 58/193 (30%), Gaps = 50/193 (25%)
Query: 218 DVPGISEEEKSRLLHC-------------VVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264
+P + E L C +++ ++ +
Sbjct: 121 SIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTL---HMTKLV----------- 166
Query: 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS-----QKLILNDG 319
++ +I N + L +LS + ++ ++ + +K+ + G
Sbjct: 167 YNWSTDLVIATN------GNELSQTIMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSG 220
Query: 320 TEVPY-GLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 378
+ G + T P+ ++ L G ID++ R S ++++ G+ +
Sbjct: 221 LRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRT-SEKNIYLAGETTT---- 275
Query: 379 TGKTVLPALAQVA 391
+ +
Sbjct: 276 ------QGPSSLI 282
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 40/179 (22%)
Query: 218 DVPGISEEEKSRLLHC-------------VVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264
++ G+ E S + HC V+ P + + L D+
Sbjct: 116 EIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDW---------GET 166
Query: 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD-SQKLILNDGTEVP 323
L+ GVR+ ++++ ++L DG +
Sbjct: 167 -----TFFTN-------GIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIA 214
Query: 324 YGLLVWSTGVGPST-LVKSLDL---PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 378
L + + ++ L G I D + + + +FA GD + S
Sbjct: 215 LAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVARPAGS 272
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 4e-08
Identities = 73/500 (14%), Positives = 140/500 (28%), Gaps = 151/500 (30%)
Query: 12 TAKSYSYSSPSIIMPSNLILTCLSHFTTDA---SPSTV-------QLTQYSGLGPTKANE 61
+ PS M + + + D + V +L Q L +
Sbjct: 96 SPIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--AL--LELRP 149
Query: 62 KPRVVVLGSGWAGCRLMKGI-DTSL-------YDVVCVSPRNHMVF--------TP---- 101
V++ G + G T + Y V C +F +P
Sbjct: 150 AKNVLIDG--------VLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVL 199
Query: 102 -LLASTCVG-TLEFRSVAEPIARIQPAIS--REPGSYFFLSHCAGIDTDNHVVHCETVTD 157
+L + S ++ + I+ I + S + +C V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-------PYE-NCLLVLL 251
Query: 158 ELRTLEPWK-FKI-------SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRK 209
++ + W F + + K V + A+T I + T + + + K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLK 309
Query: 210 LLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269
L + D+P E + ++ + D + + HV
Sbjct: 310 YL-DCRPQDLP--REVLTTNPRRLSIIAE---------SIRDGLAT--WDNWKHVNCDKL 355
Query: 270 VTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLL- 327
T+IE++ +L + R + + +LS + +P LL
Sbjct: 356 TTIIESSLNVLEPAEYR-KMF--DRLS-------------------VFPPSAHIPTILLS 393
Query: 328 -VWSTGVGP------STLVKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+W + + L K + K P I I PS+ YLE
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSI-----------YLELK 436
Query: 380 GKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGS-MATIGR 438
K L + +++ ++ L D + Y H+G + I
Sbjct: 437 VK--LENEYALHRS-------IVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEH 486
Query: 439 Y-------KALVDLR--QNK 449
+D R + K
Sbjct: 487 PERMTLFRMVFLDFRFLEQK 506
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 44/290 (15%), Positives = 93/290 (32%), Gaps = 85/290 (29%)
Query: 74 GCR-LMKGIDTSLYDVVCVSPRNHMV-------FTP-----LLASTCVGTLEFRSVAEPI 120
C+ L+ + D + + H+ TP LL + + + +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDC-RPQDLPREV 322
Query: 121 ARIQP-AIS------RE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
P +S R+ ++ H ++ D + L LEP +++ +D
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLT---TIIESSLNVLEPAEYRKMFD 376
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLL----LNLMLSDVPGISEE-EK 227
+L + F H I LL +++ SDV + + K
Sbjct: 377 RLSV-------------------FPPSAH----IPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD--DR 285
L+ E + + I +++ + + +H ++++ I +FD D
Sbjct: 414 YSLVEK-------QPKESTISIPS-IYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDL 464
Query: 286 L-------------RHYATTQLSKSGVRLVRGIVKDVD--SQKLILNDGT 320
+ H + + + L R + D QK+ +D T
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQKIR-HDST 512
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 43/192 (22%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L +VP +VVGGG G+E V ++
Sbjct: 161 LSFPEVPK----------RLIVVGGGVIGLELGVVWHRLGAE--------------VIVL 196
Query: 274 EA-NEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLL 327
E + IL + D + A K G+ + V +V + ++ L G + +
Sbjct: 197 EYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRV 256
Query: 328 VWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL 384
+ + G P T +++ L GRI +DE LR V ++A+GD G
Sbjct: 257 LVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT-RVPHIYAIGDVVR-----G---- 306
Query: 385 PALAQVAERQGK 396
P LA A +G
Sbjct: 307 PMLAHKASEEGI 318
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 48/195 (24%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
++ ++P ++ G G G+EF L ++ V VT++
Sbjct: 165 ILSRELPK----------SIIIAGAGAIGMEFGYVLKNY----------GVD----VTIV 200
Query: 274 E-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILN-DGTEVPYG- 325
E L + D + Q K GV + V I + + DG
Sbjct: 201 EFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKA 260
Query: 326 --LLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG 380
+L + G P+ + + + IG+D+++R +V ++A+GD G
Sbjct: 261 EKVLQ-AIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT-NVGHIYAIGDV------NG 312
Query: 381 KTVLPALAQVAERQG 395
LA VAE QG
Sbjct: 313 L---LQLAHVAEAQG 324
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 47/196 (23%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L+D+P V G G G+E LS V V +
Sbjct: 168 FELNDLPK----------SVAVFGPGVIGLELGQALSRL----------GVI----VKVF 203
Query: 274 E-ANEILSSFDDRLRHYATTQLSKSGVRL----VRGIVKDVDSQKLIL--NDGTEVPYG- 325
+ + + D+ ++ YA ++ V ++ D+ ++I G +
Sbjct: 204 GRSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESF 263
Query: 326 --LLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG 380
+L +TG + +++ + DE SV +F GD +
Sbjct: 264 QYVLA-ATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANN-----T 317
Query: 381 KTVLPALAQVAERQGK 396
L A GK
Sbjct: 318 ----LTLLHEAADDGK 329
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 22/192 (11%)
Query: 232 HCVVVGGGPTGVEFSGELSD-------------FIMRDVRQRYSHVKDYIHVTLIEANEI 278
++GGG +G + E+S F+ DV R + +
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGRE 224
Query: 279 LSSFDDRLRHYATT----QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334
GV + DGTE + ++W TG
Sbjct: 225 PDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFR 284
Query: 335 PSTL-VKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE 392
P+ +K LDL +P G++ +D LR +V V+ +G G L + + A
Sbjct: 285 PALSHLKGLDL-VTPQGQVEVDGSGLRALAVPSVWLLG--YGDWNGMASATLIGVTRYAR 341
Query: 393 RQGKYLFSLLNR 404
+ + +
Sbjct: 342 EAVRQVTAYCAD 353
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 54/200 (27%), Positives = 74/200 (37%), Gaps = 54/200 (27%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L L VP +VVGGG G+E + V R VT++
Sbjct: 192 LALEKVPA----------SMIVVGGGVIGLE---------LGSVWARLGA-----KVTVV 227
Query: 274 EA-NEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLIL---NDGTEVPY 324
E + IL D + L+K G+ V G VK D K+ G
Sbjct: 228 EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTL 287
Query: 325 G---LLVWSTGVGPSTLVKSLDLPKS-----PGGRIGIDEWLRVPSVQDVFAVGDCSGYL 376
+L+ +TG PST L L K+ GR+ ID + S+ V+A+GD
Sbjct: 288 DAEVVLI-ATGRKPST--DGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIGDVVR-- 341
Query: 377 ESTGKTVLPALAQVAERQGK 396
G P LA AE +G
Sbjct: 342 ---G----PMLAHKAEDEGV 354
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 52/204 (25%), Positives = 74/204 (36%), Gaps = 62/204 (30%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L LS++P VV+G G G+E V R VT++
Sbjct: 171 LALSEIPK----------KLVVIGAGYIGLEMGS---------VWGRIG-----SEVTVV 206
Query: 274 EA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYG------ 325
E +EI+ + D +R L K G++ V VD+ DG ++
Sbjct: 207 EFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG----DGVKLTVEPSAGGE 262
Query: 326 --------LLVWSTGVGPSTLVKSLDLPKS-----PGGRIGIDEWLRVPSVQDVFAVGDC 372
+LV S G P T L+L K GRI ++E +V V+A+GD
Sbjct: 263 QTIIEADVVLV-SAGRTPFT--SGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDV 318
Query: 373 SGYLESTGKTVLPALAQVAERQGK 396
G P LA AE G
Sbjct: 319 IP-----G----PMLAHKAEEDGV 333
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.98 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.97 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.97 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.97 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.96 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.96 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.96 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.96 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.95 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.95 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.94 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.93 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.88 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.84 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.61 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.58 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.45 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.42 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.11 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.1 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.95 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.92 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.9 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.88 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.7 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.7 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.66 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.61 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.61 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.61 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.59 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.56 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.52 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.52 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.49 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.48 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.48 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.47 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.47 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.46 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.46 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.45 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.45 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.44 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.43 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.42 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.4 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.39 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.38 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.38 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.36 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.36 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.36 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.35 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.34 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.34 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.33 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.33 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.32 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.32 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.32 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.31 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.31 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.29 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.29 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.28 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.28 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.26 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.26 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.26 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.24 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.23 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.21 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.21 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.21 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.21 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.21 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.2 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.2 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.2 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.19 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.19 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.18 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.18 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.18 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.17 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.15 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.15 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.15 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.14 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.14 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.13 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.13 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.12 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.12 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.11 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.11 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.07 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.06 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.06 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.05 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.04 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.03 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.03 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.01 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.99 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.99 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.99 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.99 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.98 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 97.98 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.98 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.98 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 97.98 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 97.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.96 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 97.96 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.95 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 97.95 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.94 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.94 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.93 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.93 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.93 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 97.93 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.92 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 97.92 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.92 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.91 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.9 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.88 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.88 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.88 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.88 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 97.88 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.87 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.87 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 97.86 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.86 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.84 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.83 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.83 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.83 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.82 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.82 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.81 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.81 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 97.8 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.8 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.8 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.8 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.8 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.78 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.77 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.77 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 97.76 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 97.76 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 97.76 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.76 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.75 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 97.74 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 97.74 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 97.74 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.72 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.71 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.7 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.69 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.69 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.68 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 97.68 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 97.68 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 97.68 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.67 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.66 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.65 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.64 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.64 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.63 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.62 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.62 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.62 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.62 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.6 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.6 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.6 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.59 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.58 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 97.56 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.56 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.56 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.55 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.54 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.54 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.53 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.53 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.53 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.53 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.51 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 97.5 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.5 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.49 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.47 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.47 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.46 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.46 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.45 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.45 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.44 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.43 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.43 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.42 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.42 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.41 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.4 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.4 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.39 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.38 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.38 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.36 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.36 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.35 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 97.34 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.34 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.33 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.33 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 97.33 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.32 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.31 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 97.31 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.3 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 97.29 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.28 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 97.28 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 97.28 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.26 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.24 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.22 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.16 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.16 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.15 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.1 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.1 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.08 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.07 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.06 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.06 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.04 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 97.04 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.04 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.04 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.04 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.03 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.01 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.0 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 96.97 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.95 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.93 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 96.92 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 96.91 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 96.91 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 96.86 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.85 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.8 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.72 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 96.63 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 96.59 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 96.45 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 96.39 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.29 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.26 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.21 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.14 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 96.05 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.0 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.0 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.95 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.92 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.87 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 95.83 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.74 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 95.65 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 95.65 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 95.64 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 95.55 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 95.49 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.37 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 95.36 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.26 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.17 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 94.99 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 94.97 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.9 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.65 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.59 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 94.34 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.34 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 94.33 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 94.32 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 94.14 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 94.06 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 93.97 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 93.95 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.92 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.83 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 93.65 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 93.58 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.47 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.42 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 93.36 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.33 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 93.25 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 93.1 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 93.09 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 93.01 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 92.91 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 92.89 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 92.88 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 92.78 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 92.71 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 92.67 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 92.58 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 92.55 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 92.55 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 92.53 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 92.52 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 92.44 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 92.28 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 92.26 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.08 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 92.03 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 92.02 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 92.0 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 91.97 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 91.97 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 91.82 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 91.79 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 91.73 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.7 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 91.7 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 91.7 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.69 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 91.68 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 91.63 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 91.62 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 91.61 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.53 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 91.51 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 91.46 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.3 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 91.29 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 91.29 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 91.27 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 91.21 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 91.21 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 91.2 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 91.13 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 91.12 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 91.1 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 91.1 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 90.92 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 90.91 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 90.9 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 90.89 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 90.86 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 90.86 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.85 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 90.84 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 90.82 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 90.81 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 90.77 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 90.71 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 90.7 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 90.67 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.58 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 90.56 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 90.56 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 90.55 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 90.55 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 90.55 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 90.54 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 90.52 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 90.5 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.47 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 90.47 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.45 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 90.43 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 90.3 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 90.29 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 90.29 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.26 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 90.24 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 90.22 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 90.19 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 90.18 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 90.18 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 90.14 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 90.12 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 90.11 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 90.1 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 90.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 89.99 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.9 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 89.83 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 89.76 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 89.74 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 89.72 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 89.69 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.63 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 89.55 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 89.54 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 89.49 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 89.41 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 89.4 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 89.31 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 89.27 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 89.26 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 89.25 |
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-74 Score=594.37 Aligned_cols=428 Identities=32% Similarity=0.620 Sum_probs=365.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
.++++|||||||+||+++|+.|++.+++|||||++++|.|+|++++++.|.++++++..+++++. +....++.|++++
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~--~~~~~~v~~~~~~ 117 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFA--LKKKGNVTYYEAE 117 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHH--TTCSSCEEEEEEE
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHH--HhhcCCeEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999988888763 2344679999999
Q ss_pred EEEEECCCCEEEEeeecCc---------cccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHH
Q 010845 140 CAGIDTDNHVVHCETVTDE---------LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKL 210 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~---------~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~ 210 (499)
|++||++++.|+++..... ......+..+++||+||||||+.++++++||++++++.+++++++.++++++
T Consensus 118 v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l 197 (502)
T 4g6h_A 118 ATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTF 197 (502)
T ss_dssp EEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHH
T ss_pred EEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHH
Confidence 9999999999988753210 0011233468999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHH
Q 010845 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHY 289 (499)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~ 289 (499)
.++++.+..+....++++..++++|||||++|+|+|.+|++++...+.+.||.++.+.+|+++++. +++|.++++++++
T Consensus 198 ~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~ 277 (502)
T 4g6h_A 198 AANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSY 277 (502)
T ss_dssp HHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHH
T ss_pred HHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHH
Confidence 998988877666666777788999999999999999999999888787788877777899999997 7999999999999
Q ss_pred HHHHHHhCCCEEEeC-ceEEEeCCeEEE----CCC----cEEeeeEEEEcCCCCcchhc----ccCCCCCCCCCceeeCC
Q 010845 290 ATTQLSKSGVRLVRG-IVKDVDSQKLIL----NDG----TEVPYGLLVWSTGVGPSTLV----KSLDLPKSPGGRIGIDE 356 (499)
Q Consensus 290 ~~~~l~~~gV~v~~~-~v~~v~~~~v~~----~~g----~~i~~D~vi~a~G~~p~~~~----~~~~l~~~~~G~i~vd~ 356 (499)
+.+.|+++||+++++ +|++++++++.+ .|| ++|++|+||||+|.+|+++. ..+++..+.+|+|.||+
T Consensus 278 ~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~ 357 (502)
T 4g6h_A 278 AQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVND 357 (502)
T ss_dssp HHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCT
T ss_pred HHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECC
Confidence 999999999999999 899999987665 355 36999999999999998644 34466678889999999
Q ss_pred CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCC------CCCC----CcCcCCCCCCce
Q 010845 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGG------GRAN----SAKDMELGDPFV 426 (499)
Q Consensus 357 ~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~------~~~~----~~~~~~~~~~~~ 426 (499)
+||++++|||||+|||+.. +.|++++.|.+||+++|+||.+..+... .+.. .....++ +||.
T Consensus 358 ~lq~~~~~~IfAiGD~a~~-------~~p~~a~~A~qqg~~~A~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pF~ 429 (502)
T 4g6h_A 358 FLQVKGSNNIFAIGDNAFA-------GLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNF-KPFK 429 (502)
T ss_dssp TSBBTTCSSEEECGGGEES-------SSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHTTSSSCCHHHHHHHTTC-CCCC
T ss_pred ccccCCCCCEEEEEcccCC-------CCCCchHHHHHHHHHHHHHHHHHhccchhhhhhhhccchhhhhhcCCCC-CCCE
Confidence 9999999999999999974 4689999999999999999987543100 0000 0011234 8999
Q ss_pred ecccceEEEecCCceeEeccccccCCCeEEecHHHHHHHHHHHHHhccCcchhHHhHHHHHHHhhcCCCCCC
Q 010845 427 YRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISR 498 (499)
Q Consensus 427 ~~~~g~~~~lG~~~av~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 498 (499)
|.++|+|++||.++||++++..+. .++.+.|++||++|+++|++++++||+|++|+++|++.+|||||++|
T Consensus 430 y~~~G~~a~lG~~~av~~~~~~~~-~~~~~~G~~a~~~w~~~yl~~l~~~r~r~~v~~~W~~~~~fgRdisr 500 (502)
T 4g6h_A 430 YNDLGALAYLGSERAIATIRSGKR-TFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDFFK 500 (502)
T ss_dssp CCCCEEEEECSTTCEEEEEEETTE-EEEEEEEHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred ecCcceEEEEeCCceEEEccCCCc-cceecccHHHHHHHHHHHHHHccchhhhHHHHHHHHHHHhCCCCCcC
Confidence 999999999999999999854211 23677899999999999999999999999999999999999999997
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-52 Score=425.49 Aligned_cols=391 Identities=19% Similarity=0.253 Sum_probs=307.4
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
++|||||||+||+++|.+|++. +++|||||+++++.|+|.++++..|..+.+++..+++++.. ..+++|++++|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~----~~gv~~i~~~v 78 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLP----KFNIEFINEKA 78 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGG----GGTEEEECSCE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHH----HCCcEEEEeEE
Confidence 5899999999999999999874 48999999999999999999999999999988888887632 35899999999
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (499)
++||++++.|++++ + .+++||+||||||+++. +++||++++++.+++.+++.++++++.+...
T Consensus 79 ~~Id~~~~~V~~~~---g--------~~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~----- 141 (430)
T 3hyw_A 79 ESIDPDANTVTTQS---G--------KKIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALETQKKLQELYA----- 141 (430)
T ss_dssp EEEETTTTEEEETT---C--------CEEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHH-----
T ss_pred EEEECCCCEEEECC---C--------CEEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhcc-----
Confidence 99999999998865 2 48999999999999864 5799998999999999999999988753221
Q ss_pred CCCHHHHhccccEEEeCcChHHHHHHHHHHHHHH---HHHHHhcCCCCCceEEEEEeCCCcC----CCCCHHHHHHHHHH
Q 010845 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM---RDVRQRYSHVKDYIHVTLIEANEIL----SSFDDRLRHYATTQ 293 (499)
Q Consensus 221 ~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~---~~~~~~~~~~~~~~~Vtlv~~~~~l----~~~~~~~~~~~~~~ 293 (499)
.+.++|+||+ .|+|++..+.++.. ..+.+ ...+.+.+|++++..+.+ +...+...+.+++.
T Consensus 142 ---------~~~~vv~gg~-~gve~~~~~~e~a~~~~~~l~~--~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~ 209 (430)
T 3hyw_A 142 ---------NPGPVVIGAI-PGVSCFGPAYEFALMLHYELKK--RGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDL 209 (430)
T ss_dssp ---------SCCCEEEEEC-TTCCCCHHHHHHHHHHHHHHHH--TTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHH
T ss_pred ---------CCceEEEeCC-CcEEEhHHHHHHHHHHHHHHHH--hcccccceeeeecccchhhhccchhhHHHHHHHHHH
Confidence 1245555554 45555544433321 11111 223445789999887544 34556788889999
Q ss_pred HHhCCCEEEeC-ceEEEeCCeEEECC----CcEEeeeEEEEcCCCCcchhcccCCC--CCCCCCceeeCCCCCCCCCCCe
Q 010845 294 LSKSGVRLVRG-IVKDVDSQKLILND----GTEVPYGLLVWSTGVGPSTLVKSLDL--PKSPGGRIGIDEWLRVPSVQDV 366 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~~v~~~~----g~~i~~D~vi~a~G~~p~~~~~~~~l--~~~~~G~i~vd~~l~~~~~~~I 366 (499)
++++||+++++ .|++++++.+.+++ ++++++|+++|++|++|++++..+++ ..+.+|+|.||++||++++|||
T Consensus 210 l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~I 289 (430)
T 3hyw_A 210 FAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNI 289 (430)
T ss_dssp HHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTE
T ss_pred HHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCE
Confidence 99999999999 89999999888764 35899999999999999988777764 4456788999999997799999
Q ss_pred EEeccccccccCCCC---CCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccceEEEecCCceeE
Q 010845 367 FAVGDCSGYLESTGK---TVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALV 443 (499)
Q Consensus 367 fa~GD~a~~~~~~g~---~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~~av~ 443 (499)
||+|||+.+++..+. ...|++++.|.+||+++|+||.+.++ |+ ++ +++.+...++++++|.+.+++
T Consensus 290 fAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~---g~-------~~-~~~~~~~~~~~~~~G~~~~~~ 358 (430)
T 3hyw_A 290 FGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR---NN-------PD-KYAPRLSAICIADFGEDAGFF 358 (430)
T ss_dssp EECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT---TC-------CC-CEEECCCEEEEEECSSSEEEE
T ss_pred EEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhc---CC-------CC-CcccCCcEEEEEEcCCCcEEE
Confidence 999999998764432 23689999999999999999999886 32 22 555566677889999999987
Q ss_pred eccccccC--CCeEEecH---------HHHHHHHHHHHHhccCcchhHHhHHHHHHHhhcCCCCC
Q 010845 444 DLRQNKES--KGLSLAGF---------LSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDIS 497 (499)
Q Consensus 444 ~~~~~~~~--~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 497 (499)
........ ..+...|. ..|++|+..+....+.|++|+.++++|+....+.|++.
T Consensus 359 ~~~~~~~~~~~~~~~~g~~~~~~K~~~~~~~~w~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 423 (430)
T 3hyw_A 359 FADPVIPPRERVITKMGKWAHYFKTAFEKYFLWKVRNGNIAPSFEEKVLEIFLKVHPIELCKDCE 423 (430)
T ss_dssp EEESSSSSCSEEEEEEEHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHCCCSEEECSCCC
T ss_pred EEcccCCccccccccccHHHHHHHHHHHHHHHHHHHHhCccHhHHHHHHHHHhcccccccCcccc
Confidence 54321111 12334444 45677888888888999999999999999999999884
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=368.97 Aligned_cols=379 Identities=18% Similarity=0.179 Sum_probs=289.1
Q ss_pred CCcEEEECCchHHHHHHHhccC---CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
+++|||||||+||+++|..|++ .|++|+|||+++++.|.|.++.+..+....+++..++.++. ...+++++.+
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----~~~gv~~~~~ 79 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV----ERKGIHFIAQ 79 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHH----HTTTCEEECS
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHH----HHCCCEEEEe
Confidence 5799999999999999999998 79999999999999999999888888877777766666652 2367889889
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc---cCccCCCHHHHHHHHHHHHHHHh
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLM 215 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~~~~~~~ 215 (499)
+|+.+|.+.+.|++++ + .++.||+||+|||+.++.+.+||+++ +.+.+++..++..+++.+...+
T Consensus 80 ~v~~id~~~~~V~~~~---g--------~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 147 (437)
T 3sx6_A 80 SAEQIDAEAQNITLAD---G--------NTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALL- 147 (437)
T ss_dssp CEEEEETTTTEEEETT---S--------CEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHH-
T ss_pred EEEEEEcCCCEEEECC---C--------CEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHH-
Confidence 9999999999887765 2 37999999999999999999999863 5667889999998887664321
Q ss_pred hcCCCCCCHHHHhccccEEEeCcChHH------HHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCC-c----CCCCC
Q 010845 216 LSDVPGISEEEKSRLLHCVVVGGGPTG------VEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE-I----LSSFD 283 (499)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvVvGgG~~g------ve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~-~----l~~~~ 283 (499)
+.++++|||+|+++ +|+|..++....+ ...+++.+ |+++++.+ + ++.++
T Consensus 148 -------------~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~------~g~~~~~~~Vtlv~~~~~~~~~~l~~~~ 208 (437)
T 3sx6_A 148 -------------REPGPIVIGAMAGASCFGPAYEYAMIVASDLKK------RGMRDKIPSFTFITSEPYIGHLGIQGVG 208 (437)
T ss_dssp -------------HSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHH------TTCGGGCSCEEEEESSSSTTCTTTTCCT
T ss_pred -------------hCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHH------cCCcccCcEEEEEcCCccccccccCcch
Confidence 11267899986654 9999888765421 11122245 99999874 4 33333
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEECC---------CcEEeeeEEEEcCCCCcchhccc-CCCCCCCCCce
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILND---------GTEVPYGLLVWSTGVGPSTLVKS-LDLPKSPGGRI 352 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~~---------g~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i 352 (499)
+..+.+.+.|+++||+++++ +|++++++.+++++ ++++++|++++++|+.++..+.+ .++ .+++|+|
T Consensus 209 -~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i 286 (437)
T 3sx6_A 209 -DSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGGFV 286 (437)
T ss_dssp -THHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTSCB
T ss_pred -HHHHHHHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCCcE
Confidence 47888999999999999999 89999999887765 67899999999999998864443 566 6788999
Q ss_pred eeCCCCCCCCCCCeEEeccccccccCCCCC---CCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecc
Q 010845 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKT---VLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRH 429 (499)
Q Consensus 353 ~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~---~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (499)
.||+++|++++|||||+|||+.++...+.+ ..|++++.|.+||+.+|+||.+.+. |+ ++ .+|.+..
T Consensus 287 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~---g~-------~~-~~~~~~~ 355 (437)
T 3sx6_A 287 LVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLE---GR-------KG-EQTMGTW 355 (437)
T ss_dssp CBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTT---TS-------CC-CCCCCSC
T ss_pred EeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhc---CC-------CC-CCcccCc
Confidence 999999999999999999999876543321 2588999999999999999999886 32 22 5655555
Q ss_pred cceE-EEecCCceeEec-ccc-ccCCCeEEecHHHHHHHHHHHHHhccCcchhHHhHHHHHHHh
Q 010845 430 LGSM-ATIGRYKALVDL-RQN-KESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTF 490 (499)
Q Consensus 430 ~g~~-~~lG~~~av~~~-~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 490 (499)
...| +++|...++... +.. +....+.+.|.++|+++..+..+++. +.|......|+.++
T Consensus 356 ~~~~~~~~G~~~~~~~~~~~~p~~~~~~~~~g~~~~~~K~~~~~~f~~--~~~~g~~~p~~~~~ 417 (437)
T 3sx6_A 356 NAVAFADMGDRGAAFIALPQLKPRKVDVFAYGRWVHLAKVAFEKYFIR--KMKMGVSEPFYEKV 417 (437)
T ss_dssp CEEEEEECSSCEEEEEEESSSSSCSEEEEEEEHHHHHHHHHHHHHHHH--HHHHCCCSCCCCHH
T ss_pred ceEEEEEeCCCceEEEeCCCCCCcccccccccHHHHHHHHHHHHHHHH--HhccCCccccHHHH
Confidence 5544 568888766422 111 12245789999999887766655554 44444444554443
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=361.00 Aligned_cols=300 Identities=19% Similarity=0.272 Sum_probs=248.0
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcccc-cchhhhhccCCCCCccc--cchhhhccccccCCCeEEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVA--EPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~~-~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 137 (499)
+||||||||+||++||..|++.| .+|+|||+++++.|. +.++....+........ .....+ ....++.++.
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~ 76 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKF----YDRKQITVKT 76 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHH----HHHHCCEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHH----HHhcCCEEEe
Confidence 57999999999999999998876 579999999988876 44554444443322211 111121 1224566644
Q ss_pred -EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 138 -~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
.+|+.||.+.+.+.+.....+ +..++.||+||||||++|+.|++|| +..+.+++++++..++..+..
T Consensus 77 ~~~V~~id~~~~~~~~~~~~~~------~~~~~~yd~lVIATGs~p~~p~i~g--~~~~~~~~~~~~~~l~~~~~~---- 144 (437)
T 4eqs_A 77 YHEVIAINDERQTVSVLNRKTN------EQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA---- 144 (437)
T ss_dssp TEEEEEEETTTTEEEEEETTTT------EEEEEECSEEEECCCEEECCCCCCC--TTEECCSSHHHHHHHHHHHHH----
T ss_pred CCeEEEEEccCcEEEEEeccCC------ceEEEEcCEEEECCCCccccccccC--ceEEeeccHHHHHHHHHhhhc----
Confidence 689999999999988764322 2457999999999999999999988 456778899999888765421
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHH
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLS 295 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~ 295 (499)
.+.++++|||||++|+|+|..+.+++ .+||++++. ++++.+++++.+.+.+.++
T Consensus 145 -----------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~ 199 (437)
T 4eqs_A 145 -----------NQVDKVLVVGAGYVSLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELD 199 (437)
T ss_dssp -----------HTCCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEEESSSCCSTTSCGGGGHHHHHHHH
T ss_pred -----------cCCcEEEEECCccchhhhHHHHHhcC--------------CcceeeeeeccccccccchhHHHHHHHhh
Confidence 23459999999999999999999988 899999997 7899999999999999999
Q ss_pred hCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEecccc
Q 010845 296 KSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a 373 (499)
++||+++++ +|++++.+.+++++|+++++|.|++|+|.+|| .+++..+++++++|+|.||+++|| +.|||||+|||+
T Consensus 200 ~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~T-s~p~IyA~GDva 278 (437)
T 4eqs_A 200 KREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278 (437)
T ss_dssp HTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBC-SSTTEEECGGGE
T ss_pred ccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccC-CCCCEEEEEEcc
Confidence 999999999 89999999999999999999999999999999 578888999999999999999999 999999999999
Q ss_pred ccccC-CCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 374 GYLES-TGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 374 ~~~~~-~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
..+.. .+.+..+++++.|.+||+++|+||..
T Consensus 279 ~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g 310 (437)
T 4eqs_A 279 TSHYRHVDLPASVPLAWGAHRAASIVAEQIAG 310 (437)
T ss_dssp EEEBSSSSSEECCCSHHHHHHHHHHHHHHHHS
T ss_pred CcccccCCccccchhHHHHHHHHHHHHHHHcC
Confidence 87653 34455678999999999999999863
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=352.16 Aligned_cols=307 Identities=19% Similarity=0.281 Sum_probs=249.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc-ccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
.+++||||||||+||++||..|...+.+|+|||+++++.| .|.++....+..+.+++.....+.. . ..++.++.+
T Consensus 7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~---~-~~~i~~~~~ 82 (385)
T 3klj_A 7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWY---E-KNNIKVITS 82 (385)
T ss_dssp -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHH---H-HTTCEEECS
T ss_pred cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHH---H-HCCCEEEeC
Confidence 4568999999999999999999888899999999998877 5777777777766665554444432 2 257777765
Q ss_pred -EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
+|+.||++++.|++.+ + .++.||+||||||+.|+.|++||.+ +++++++.+++..++..+.
T Consensus 83 ~~V~~id~~~~~v~~~~---g--------~~~~yd~lvlAtG~~p~~p~i~G~~-~v~~~~~~~d~~~l~~~l~------ 144 (385)
T 3klj_A 83 EFATSIDPNNKLVTLKS---G--------EKIKYEKLIIASGSIANKIKVPHAD-EIFSLYSYDDALKIKDECK------ 144 (385)
T ss_dssp CCEEEEETTTTEEEETT---S--------CEEECSEEEECCCEEECCCCCTTCS-CEECCSSHHHHHHHHHHHH------
T ss_pred CEEEEEECCCCEEEECC---C--------CEEECCEEEEecCCCcCCCCCCCCC-CeEEeCCHHHHHHHHHHhh------
Confidence 8999999999988765 2 4799999999999999999999987 7888999999998877652
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-CCHHHHHHHHHHHH
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLS 295 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-~~~~~~~~~~~~l~ 295 (499)
..++|+|||||++|+|+|..|++.+ .+||++++. ++++. +++.+.+.+.+.++
T Consensus 145 -----------~~~~vvVIGgG~~g~E~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~ 199 (385)
T 3klj_A 145 -----------NKGKAFIIGGGILGIELAQAIIDSG--------------TPASIGIILEYPLERQLDRDGGLFLKDKLD 199 (385)
T ss_dssp -----------HHSCEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSSSSCTTTSCHHHHHHHHHHHH
T ss_pred -----------cCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEcCCccchhhcCHHHHHHHHHHHH
Confidence 2359999999999999999999887 899999987 67775 89999999999999
Q ss_pred hCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEecccc
Q 010845 296 KSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a 373 (499)
+.||+++++ .+.++ |+++++|.||+|+|++|+ ++++.++++.+ +| |.||+++|| +.|+|||+|||+
T Consensus 200 ~~gV~~~~~~~v~~i---------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~g-i~vd~~~~t-~~~~IyA~GD~a 267 (385)
T 3klj_A 200 RLGIKIYTNSNFEEM---------GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RG-ILVNDHMET-SIKDIYACGDVA 267 (385)
T ss_dssp TTTCEEECSCCGGGC---------HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SS-EEECTTCBC-SSTTEEECGGGE
T ss_pred hCCCEEEeCCEEEEc---------CeEEecCeEEECcCcccChhhhhhcCCCcC-CC-EEECCCccc-CCCCEEEEEeeE
Confidence 999999998 67665 678999999999999999 68888888875 45 999999999 999999999999
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCce-ecccc-eEEEecCCc
Q 010845 374 GYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFV-YRHLG-SMATIGRYK 440 (499)
Q Consensus 374 ~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~~~lG~~~ 440 (499)
.+++ ..+.++..|.+||+.+|+||.... . ++....|+. ++..+ .+.++|...
T Consensus 268 ~~~~-----~~~~~~~~A~~qg~~aa~~i~g~~-----~-----~~~~~~~~~~~~~~~~~~~~~G~~~ 321 (385)
T 3klj_A 268 EFYG-----KNPGLINIANKQGEVAGLNACGED-----A-----SYSEIIPSPILKVSGISIISCGDIE 321 (385)
T ss_dssp EETT-----BCCCCHHHHHHHHHHHHHHHTTCC-----C-----CCCCCCCCCEEEETTEEEEEESCCT
T ss_pred ecCC-----CcccHHHHHHHHHHHHHHHhcCCC-----c-----CCCCCCCcEEEEeCCCcEEEEcCCC
Confidence 7642 236789999999999999986321 1 111113444 34344 678888643
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=343.63 Aligned_cols=282 Identities=26% Similarity=0.439 Sum_probs=236.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-cchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.+|||||||+||+++|..|++.| +|+|||+++...|. +.++....+..+.+.+.....+. + ...+++++.+ +|
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~-~~~~v~~~~g~~v 83 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW---Y-RKRGIEIRLAEEA 83 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHH---H-HHHTEEEECSCCE
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHH---H-HhCCcEEEECCEE
Confidence 58999999999999999999999 99999999876654 66666666665555444433333 1 2257888876 69
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (499)
+.+|++.+.|. .+ + .++.||+||||||+.|+.|++|| .++++++++..++.++++.+.
T Consensus 84 ~~id~~~~~V~-~~---g--------~~~~~d~lViATGs~p~~p~i~G-~~~v~~~~~~~~~~~l~~~~~--------- 141 (367)
T 1xhc_A 84 KLIDRGRKVVI-TE---K--------GEVPYDTLVLATGARAREPQIKG-KEYLLTLRTIFDADRIKESIE--------- 141 (367)
T ss_dssp EEEETTTTEEE-ES---S--------CEEECSEEEECCCEEECCCCSBT-GGGEECCCSHHHHHHHHHHHH---------
T ss_pred EEEECCCCEEE-EC---C--------cEEECCEEEECCCCCCCCCCCCC-cCCEEEEcCHHHHHHHHHHhh---------
Confidence 99999988876 33 2 37999999999999999999999 466778889988888766542
Q ss_pred CCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCC
Q 010845 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGV 299 (499)
Q Consensus 221 ~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV 299 (499)
..++++|||||++|+|+|..|++++ .+|+++++. ++++ +++++.+.+.+.+++.||
T Consensus 142 --------~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV 198 (367)
T 1xhc_A 142 --------NSGEAIIIGGGFIGLELAGNLAEAG--------------YHVKLIHRGAMFLG-LDEELSNMIKDMLEETGV 198 (367)
T ss_dssp --------HHSEEEEEECSHHHHHHHHHHHHTT--------------CEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTE
T ss_pred --------cCCcEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCC
Confidence 2259999999999999999999887 899999987 6788 999999999999999999
Q ss_pred EEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEecccccccc
Q 010845 300 RLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 377 (499)
Q Consensus 300 ~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~ 377 (499)
+++++ +|.+++.+.+++++|+ +++|.||+|+|.+|+ ++++.++++.+ +| |.||+++|| +.|||||+|||+....
T Consensus 199 ~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~g-i~Vd~~~~t-~~~~IyA~GD~a~~~~ 274 (367)
T 1xhc_A 199 KFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RG-ILIDDNFRT-SAKDVYAIGDCAEYSG 274 (367)
T ss_dssp EEECSCCEEEECSSEEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBS-SS-EECCTTSBC-SSTTEEECGGGEEBTT
T ss_pred EEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CC-EEECCCccc-CCCCEEEeEeeeecCC
Confidence 99999 8999998889999988 999999999999999 48888888876 45 999999999 9999999999996421
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 378 STGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 378 ~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
..+++++.|.+||+.+|+||.
T Consensus 275 -----~~~~~~~~A~~qg~~aa~~i~ 295 (367)
T 1xhc_A 275 -----IIAGTAKAAMEQARVLADILK 295 (367)
T ss_dssp -----BCCCSHHHHHHHHHHHHHHHT
T ss_pred -----CCccHHHHHHHHHHHHHHHhc
Confidence 235689999999999999985
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=349.08 Aligned_cols=316 Identities=20% Similarity=0.307 Sum_probs=256.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCe--EEEEcCCCCcccc--cchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~--V~lie~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
++|||||||+||+++|..|++.|++ |+|||+++++.|. ++...+..+......+ ...... + ...++.++.+
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~---~-~~~~i~~~~~ 77 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADW---Y-GEARIDMLTG 77 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTH---H-HHTTCEEEES
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHH---H-HHCCCEEEeC
Confidence 5899999999999999999999877 9999999998886 3444466666665554 222222 1 2257888887
Q ss_pred -EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
+|+.+|++.+.|.+.+ + .++.||+||+|||+.|+.|++||.+ +.++.+++..++..++..+
T Consensus 78 ~~v~~id~~~~~v~~~~---g--------~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~------ 140 (410)
T 3ef6_A 78 PEVTALDVQTRTISLDD---G--------TTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSW------ 140 (410)
T ss_dssp CCEEEEETTTTEEEETT---S--------CEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHC------
T ss_pred CEEEEEECCCCEEEECC---C--------CEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHh------
Confidence 9999999999888765 2 4799999999999999999999985 5677888999988876543
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHH
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQL 294 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l 294 (499)
...++|+|||+|++|+|+|..+.+.+ .+|+++++. .+++ .+++.+.+.+.+.+
T Consensus 141 -----------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l 195 (410)
T 3ef6_A 141 -----------TSATRLLIVGGGLIGCEVATTARKLG--------------LSVTILEAGDELLVRVLGRRIGAWLRGLL 195 (410)
T ss_dssp -----------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSHHHHCHHHHHHHHHHH
T ss_pred -----------ccCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCccchhhcCHHHHHHHHHHH
Confidence 23469999999999999999999877 899999987 5665 47899999999999
Q ss_pred HhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEE
Q 010845 295 SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
++.||+++++ .|.+++.+ .|+++||++++||.||+|+|.+|+ ++++.++++.+ +| |.||+++|| +.|+|||
T Consensus 196 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~t-~~~~IyA 272 (410)
T 3ef6_A 196 TELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-RG-VIVDHCGAT-LAKGVFA 272 (410)
T ss_dssp HHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SS-EECCTTSBC-SSTTEEE
T ss_pred HHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-Ce-EEEccCeeE-CCCCEEE
Confidence 9999999998 89999875 689999999999999999999999 58888899887 45 999999999 9999999
Q ss_pred eccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccc--eEEEecCC
Q 010845 369 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGRY 439 (499)
Q Consensus 369 ~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lG~~ 439 (499)
+|||+..+...|....+++++.|..||+.+|+||... . .++.. .||.+.+.. .+.++|..
T Consensus 273 ~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~------~----~~~~~-~p~~~~~~~~~~~~~~G~~ 334 (410)
T 3ef6_A 273 VGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGK------N----VSAPQ-LPVSWTEIAGHRMQMAGDI 334 (410)
T ss_dssp CGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTC------C----CCCCB-CCEEEEEETTEEEEEESCS
T ss_pred EEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCC------C----CCCCC-CCeeEEEECCceEEEEcCC
Confidence 9999987654444445778999999999999998631 1 12232 677766643 45666653
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=352.28 Aligned_cols=350 Identities=17% Similarity=0.198 Sum_probs=264.3
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
.+||||||||+||+++|.+|++. +.+|||||+++++.|.|+++.+..|..+.+++..+++.+.+ .+++|++++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~-----~gv~~i~~~ 76 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRA-----HGIQVVHDS 76 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHH-----TTCEEECSC
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHH-----CCCEEEEeE
Confidence 37899999999999999999775 46899999999999999999999999888888777776632 578999999
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc-----cCccCCCHHHHHHHHHHHHHHH
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-----NATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~-----~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
|+.||++++.+.+.+ ..++.||+||||||+.++++++||.++ ..+.+++.+++..+++.+...
T Consensus 77 v~~id~~~~~v~~~~-----------g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~- 144 (401)
T 3vrd_B 77 ALGIDPDKKLVKTAG-----------GAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESM- 144 (401)
T ss_dssp EEEEETTTTEEEETT-----------SCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHS-
T ss_pred EEEEEccCcEEEecc-----------cceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhc-
Confidence 999999999998765 248999999999999999999999864 235567888888888776321
Q ss_pred hhcCCCCCCHHHHhccccEEEeCc-------ChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c--CCCCCH
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGG-------GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I--LSSFDD 284 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGg-------G~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~--l~~~~~ 284 (499)
.. ...+|+++ +..+.|++.+++++.. +.. ...+|++++..+ + ++.+++
T Consensus 145 -------------~~-~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~----~~~----~~~~v~i~~~~~~~~~~~~~~~ 202 (401)
T 3vrd_B 145 -------------DD-GGVVIIAPPAPPFRCPPGPYERASQIAHYLK----AHK----SKSKVIILDNSQTFSKQAQFTK 202 (401)
T ss_dssp -------------CT-TCEEEEECCSSSCBCTTHHHHHHHHHHHHHH----HHC----TTCEEEEECSSSSCTTHHHHHH
T ss_pred -------------cc-CCcEEEecCCccEEeehHHHHHHHHHHHHHH----hcC----CCCEEEEEcccccccccccccH
Confidence 01 13344433 3456777777766542 122 237899999864 3 234566
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC----CeEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCC-C
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS----QKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEW-L 358 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~----~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~-l 358 (499)
.+.+.+.+.+++.||+++++ ++..++. ..+.+++|+++++|+++|++|++|+++++++++ .+++|+|.||++ |
T Consensus 203 ~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl-~~~~G~i~VD~~tl 281 (401)
T 3vrd_B 203 GWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKIAQSASL-TNDSGWCPVDIRTF 281 (401)
T ss_dssp HHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEECHHHHHTTC-CCTTSSBCBCTTTC
T ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCchhHhhccc-cccCCCEEECCCcc
Confidence 77777777788999999998 6666643 268899999999999999999999999999998 578899999987 8
Q ss_pred CCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccceE-EEec
Q 010845 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSM-ATIG 437 (499)
Q Consensus 359 ~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~lG 437 (499)
|++++|||||+|||+. ..+.|++++.|.+||+++|+||.+.++ |+ ++ .|+.|.....+ +..|
T Consensus 282 ~~t~~p~VfAiGDva~------~~~~pk~a~~A~~qa~v~A~ni~~~l~---G~-------~~-~~~~y~~~~~~~~~~~ 344 (401)
T 3vrd_B 282 ESSLQPGIHVIGDACN------AAPMPKSAYSANSQAKVAAAAVVALLK---GE-------EP-GTPSYLNTCYSILAPG 344 (401)
T ss_dssp BBSSSTTEEECGGGBC------CTTSCBSHHHHHHHHHHHHHHHHHHHH---TC-------CC-CCCCEEEEEEEEEETT
T ss_pred eecCCCCEEEeccccc------CCCCCchHHHHHHHHHHHHHHHHHHhc---CC-------CC-CCcccCCeEEEEEecC
Confidence 8779999999999995 245689999999999999999999987 33 22 56666655433 2222
Q ss_pred CCceeEecccc----------ccCCCeEEecHHHHHHHHHH
Q 010845 438 RYKALVDLRQN----------KESKGLSLAGFLSWLVWRSA 468 (499)
Q Consensus 438 ~~~av~~~~~~----------~~~~~~~~~g~~~~~~~~~~ 468 (499)
....+...+.. ...++....++.+|++|+..
T Consensus 345 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (401)
T 3vrd_B 345 YGISIAAVYRPNAEGKAIEAVPDSGGITPVDAPDWVLEREV 385 (401)
T ss_dssp EEEEEEEEEEECTTSSSEEECTTCCEESCTTCCHHHHHHHH
T ss_pred CceEEEEEecccCCCceEEEecccCCcccccchhHHHhccc
Confidence 22222211110 01234556678899987743
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=345.98 Aligned_cols=320 Identities=21% Similarity=0.367 Sum_probs=256.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCe--EEEEcCCCCcccc--cchhhhhccCCCCCccccchhhhccccccCCCeEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~--V~lie~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
.+++|||||||+||+++|..|++.|++ |+|||+++++.|. ++...+..+......+....... ....++.++
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~ 83 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQF----WEDKAVEMK 83 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHH----HHHTTEEEE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHH----HHHCCcEEE
Confidence 357999999999999999999999887 9999999988776 33334555554444443333322 123678888
Q ss_pred EE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHH
Q 010845 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+ +|+.+|.+.+.|.+.+ + ..+.||+||+|||+.|+.|++||.+ +.++.+++.+++..++..+.
T Consensus 84 ~~~~v~~id~~~~~v~~~~---g--------~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~--- 149 (415)
T 3lxd_A 84 LGAEVVSLDPAAHTVKLGD---G--------SAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELD--- 149 (415)
T ss_dssp ETCCEEEEETTTTEEEETT---S--------CEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHH---
T ss_pred eCCEEEEEECCCCEEEECC---C--------CEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhh---
Confidence 86 9999999999988754 2 4799999999999999999999985 56778889999888876542
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHH
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~ 292 (499)
...++++|||+|++|+|+|..+...+ .+|+++++. .+++ .+++.+.+.+.+
T Consensus 150 -------------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~l~~ 202 (415)
T 3lxd_A 150 -------------AGAKNAVVIGGGYIGLEAAAVLTKFG--------------VNVTLLEALPRVLARVAGEALSEFYQA 202 (415)
T ss_dssp -------------TTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred -------------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCchhhhhcCHHHHHHHHH
Confidence 01469999999999999999999887 899999987 5666 579999999999
Q ss_pred HHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCC
Q 010845 293 QLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQD 365 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~ 365 (499)
.+++.||+++++ .|.+++.+ .|.+++|++++||.||+|+|.+|+ ++++.++++.+ +| |.||+++|| +.|+
T Consensus 203 ~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~t-~~~~ 279 (415)
T 3lxd_A 203 EHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NG-VDVDEFCRT-SLTD 279 (415)
T ss_dssp HHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SS-EECCTTCBC-SSTT
T ss_pred HHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CC-EEECCCCCc-CCCC
Confidence 999999999999 89998753 588899999999999999999999 58888898876 45 999999999 9999
Q ss_pred eEEeccccccccC-C-CCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccc--eEEEecCC
Q 010845 366 VFAVGDCSGYLES-T-GKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGRY 439 (499)
Q Consensus 366 Ifa~GD~a~~~~~-~-g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lG~~ 439 (499)
|||+|||+..+.+ . |....+.+++.|.+||+.+|+||... . .++.. .||.+.++. .+.++|..
T Consensus 280 iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~------~----~~~~~-~p~~~~~~~~~~~~~~G~~ 346 (415)
T 3lxd_A 280 VYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGA------P----VPYKA-TPWFWSNQYDLKLQTVGLS 346 (415)
T ss_dssp EEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTC------C----CCCCC-CCEEEEEETTEEEEEEECC
T ss_pred EEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCC------C----CCCCC-CCeeEeeeCCcEEEEEeCC
Confidence 9999999987653 2 44556678999999999999998631 1 12233 677776664 45666753
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=344.14 Aligned_cols=306 Identities=21% Similarity=0.295 Sum_probs=256.4
Q ss_pred CCcEEEECCchHHHHHHHhccC---CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
|++|||||||+||+++|..|++ .|++|+|||+++++.|.|.++....+.....++...+.+... ..+++++.+
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~gv~~~~~ 76 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALP----EKGIQFQEG 76 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTG----GGTCEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHh----hCCeEEEEe
Confidence 3689999999999999999999 899999999999999988887777777777777777776532 257888889
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcC
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
+|+.++.+.+.|++.+... +..++.||+||+|||+.++.+.+||++++...+.+.+++..+++.+..
T Consensus 77 ~v~~i~~~~~~V~~~~g~~-------~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~------ 143 (409)
T 3h8l_A 77 TVEKIDAKSSMVYYTKPDG-------SMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLES------ 143 (409)
T ss_dssp EEEEEETTTTEEEEECTTS-------CEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHH------
T ss_pred eEEEEeCCCCEEEEccCCc-------ccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHH------
Confidence 9999999999998876221 134699999999999999999999997777778888888888877632
Q ss_pred CCCCCHHHHhccccEEEeCcCh-------------------------HHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEE
Q 010845 219 VPGISEEEKSRLLHCVVVGGGP-------------------------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~-------------------------~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv 273 (499)
..++++|||+|. .++|+|..+++...+ ...+++.+|+++
T Consensus 144 ----------~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~------~g~~~~~~v~~~ 207 (409)
T 3h8l_A 144 ----------FQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKK------KGMLDKVHVTVF 207 (409)
T ss_dssp ----------CCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHT------TTCTTTEEEEEE
T ss_pred ----------hcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHH------cCCCCCeEEEEE
Confidence 013677999992 588999888765421 122344799999
Q ss_pred eCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhcccCCCC-CCCCCc
Q 010845 274 EANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP-KSPGGR 351 (499)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~-~~~~G~ 351 (499)
++.++++.+++.+.+.+.+.+++.||+++++ +|+++++++|+++||+++++|+||+++|+.|++++..++.. .+++|+
T Consensus 208 ~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~ 287 (409)
T 3h8l_A 208 SPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGF 287 (409)
T ss_dssp CSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSC
T ss_pred eCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCC
Confidence 9977888889999999999999999999998 89999999999999999999999999999999888877322 467899
Q ss_pred eeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 352 i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|.||+++|++++|||||+|||+.+ +.|+++..|..||+++|+||...+.
T Consensus 288 i~vd~~~~~~~~~~vfa~GD~~~~-------~~~~~~~~A~~q~~~aa~~i~~~l~ 336 (409)
T 3h8l_A 288 IPTDLNMVSIKYDNVYAVGDANSM-------TVPKLGYLAVMTGRIAAQHLANRLG 336 (409)
T ss_dssp BCBBTTSBBSSCTTEEECGGGBTT-------CCSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCcccccCCCCCEEEeehhccC-------CCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999899999999999964 3488999999999999999998874
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=341.32 Aligned_cols=317 Identities=21% Similarity=0.384 Sum_probs=254.6
Q ss_pred CcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCcccc--cchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
++|||||||+||+++|..|++.|+ +|+|||+++++.|. ++...+..+......+....... + ...++.++.+
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~---~-~~~~i~~~~~ 77 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKF---F-QDQAIELISD 77 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHH---H-HHTTEEEECC
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHH---H-HhCCCEEEEE
Confidence 689999999999999999999988 89999999988776 33335566655555444433332 1 2257888779
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
+|+.+|++.+.+.+.+ + .++.||+||+|||+.|+.|++||.+ +.++.+++..++..++..+
T Consensus 78 ~v~~id~~~~~v~~~~---g--------~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~------- 139 (404)
T 3fg2_P 78 RMVSIDREGRKLLLAS---G--------TAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRM------- 139 (404)
T ss_dssp CEEEEETTTTEEEESS---S--------CEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHG-------
T ss_pred EEEEEECCCCEEEECC---C--------CEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHh-------
Confidence 9999999999988765 2 4789999999999999999999975 5677888998888876653
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHHH
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLS 295 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l~ 295 (499)
...++++|||+|++|+|+|..+...+ .+|+++++. .+++ .+++.+.+.+.+.++
T Consensus 140 ----------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~ 195 (404)
T 3fg2_P 140 ----------PDKKHVVVIGAGFIGLEFAATARAKG--------------LEVDVVELAPRVMARVVTPEISSYFHDRHS 195 (404)
T ss_dssp ----------GGCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHHHHHHHH
T ss_pred ----------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCCCcchhhccCHHHHHHHHHHHH
Confidence 23469999999999999999999877 899999987 5665 578999999999999
Q ss_pred hCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEE
Q 010845 296 KSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
+.||+++++ +|.+++.+ +|.++||++++||.||+|+|.+|+ ++++.++++.+ +| |.||+++|| +.|+|||
T Consensus 196 ~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~G-i~vd~~~~t-~~~~iya 272 (404)
T 3fg2_P 196 GAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AG-IIVDQQLLT-SDPHISA 272 (404)
T ss_dssp HTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EEECTTSBC-SSTTEEE
T ss_pred hCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCC-CC-EEECCCccc-CCCCEEE
Confidence 999999999 89998753 588899999999999999999999 48888898887 45 999999999 9999999
Q ss_pred eccccccccC-CCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccc--eEEEecCC
Q 010845 369 VGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGRY 439 (499)
Q Consensus 369 ~GD~a~~~~~-~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lG~~ 439 (499)
+|||+..+.+ .|....+.+++.|..||+.+|+||... . .++.. .||.+.++. .+.++|..
T Consensus 273 ~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~------~----~~~~~-~p~~~~~~~~~~~~~~G~~ 335 (404)
T 3fg2_P 273 IGDCALFESVRFGETMRVESVQNATDQARCVAARLTGD------A----KPYDG-YPWFWSDQGDDKLQIVGLT 335 (404)
T ss_dssp CGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTC------C----CCCCC-CCEEEEEETTEEEEEEECC
T ss_pred eecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCC------C----CCCCC-CCceEeEECCcEEEEEeCC
Confidence 9999987642 233334667999999999999998521 1 12233 677777665 44666643
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-41 Score=338.85 Aligned_cols=314 Identities=23% Similarity=0.332 Sum_probs=245.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCcccc-cch-hhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLL-ASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~-~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
+++|+|||||+||+++|..|++.|+ +|+|||+++++.|. +.+ ..+..+.. .+... ++ .....++.++.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-----~~~~~~v~~~~ 78 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGD-AEKIR--LD-----CKRAPEVEWLL 78 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCC-GGGSB--CC-----CTTSCSCEEEE
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCc-hhhhh--HH-----HHHHCCCEEEc
Confidence 4789999999999999999999887 49999999887665 222 23333332 22111 11 12335788887
Q ss_pred E-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC-CCccccCccCCCHHHHHHHHHHHHHHHh
Q 010845 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HGVKENATFLREVHHAQEIRRKLLLNLM 215 (499)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i-pG~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (499)
+ +|+.+|.+.+.|.+.+ + .++.||+||+|||+.|..|++ ||.+++++++.+.+++..+++.+
T Consensus 79 ~~~v~~i~~~~~~v~~~~---g--------~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~----- 142 (408)
T 2gqw_A 79 GVTAQSFDPQAHTVALSD---G--------RTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGL----- 142 (408)
T ss_dssp TCCEEEEETTTTEEEETT---S--------CEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTC-----
T ss_pred CCEEEEEECCCCEEEECC---C--------CEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHh-----
Confidence 7 4999999988888754 2 379999999999999999999 99866677788888887765432
Q ss_pred hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHH
Q 010845 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQ 293 (499)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~ 293 (499)
...++|+|||||++|+|+|..|.+.+ .+|+++++. ++++ .+++++.+.+.+.
T Consensus 143 ------------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 196 (408)
T 2gqw_A 143 ------------RPQSRLLIVGGGVIGLELAATARTAG--------------VHVSLVETQPRLMSRAAPATLADFVARY 196 (408)
T ss_dssp ------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTSCHHHHHHHHHH
T ss_pred ------------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEEeCCcccccccCHHHHHHHHHH
Confidence 12359999999999999999999877 899999997 6777 4899999999999
Q ss_pred HHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEecc
Q 010845 294 LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD 371 (499)
+++.||+++++ +|.+++++.|++++|++++||.||+|+|.+|+ ++++.++++.+ +| |.||+++|| +.|+|||+||
T Consensus 197 l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~t-~~~~IyA~GD 273 (408)
T 2gqw_A 197 HAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACD-DG-IFVDAYGRT-TCPDVYALGD 273 (408)
T ss_dssp HHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBS-SS-EECCTTCBC-SSTTEEECGG
T ss_pred HHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCC-CC-EEECCCCcc-CCCCEEEEEE
Confidence 99999999999 89999855888999999999999999999999 68888888876 46 999999999 9999999999
Q ss_pred ccccccCC-CCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccc--eEEEecC
Q 010845 372 CSGYLEST-GKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGR 438 (499)
Q Consensus 372 ~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lG~ 438 (499)
|+..+.+. |....+++++.|.+||+++|+||.... . .+++. .|+.+.... .+.++|.
T Consensus 274 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-----~----~~~~~-~p~~~~~~~~~~~~~~G~ 333 (408)
T 2gqw_A 274 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPT-----A----PGYAE-LPWYWSDQGALRIQVAGL 333 (408)
T ss_dssp GEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTT-----S----CCCCC-CCEEEEEETTEEEEEEEC
T ss_pred EEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCC-----C----CcCCC-CCeEEEEECCceEEEECC
Confidence 99865321 222235578999999999999986321 0 02232 577665542 5666764
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=344.57 Aligned_cols=306 Identities=24% Similarity=0.342 Sum_probs=229.0
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCCCCCccccc----hhhhccccccCCCeE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEP----IARIQPAISREPGSY 134 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~ 134 (499)
+++|||||||+||+++|..|++. |++|+|||+++.+.|.+. ++....+......-..+ +......+....++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 47999999999999999999987 899999999999877643 44444443322111100 111222233335666
Q ss_pred EE-EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHH
Q 010845 135 FF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLL 212 (499)
Q Consensus 135 ~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~ 212 (499)
+. ..+|+.++.+.+.+.+.+..++ +...+.||+||+|||+.|..|++||.+ +..+.+.+..++..++..+.
T Consensus 83 ~~~~~~V~~id~~~~~v~~~~~~~g------~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~- 155 (472)
T 3iwa_A 83 ALVETRAHAIDRAAHTVEIENLRTG------ERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAIS- 155 (472)
T ss_dssp EECSEEEEEEETTTTEEEEEETTTC------CEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCC-
T ss_pred EEECCEEEEEECCCCEEEEeecCCC------CEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh-
Confidence 64 5799999999999988763222 134799999999999999999999984 56677888888877665431
Q ss_pred HHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHH-HHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHH
Q 010845 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHY 289 (499)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~-~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~ 289 (499)
....++++|||+|++|+|+|..+..+ + .+|+++++. .+++ .+++++.+.
T Consensus 156 --------------~~~~~~vvViGgG~~g~e~A~~l~~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~ 207 (472)
T 3iwa_A 156 --------------AGEVSKAVIVGGGFIGLEMAVSLADMWG--------------IDTTVVELADQIMPGFTSKSLSQM 207 (472)
T ss_dssp --------------TTSCSEEEEECCSHHHHHHHHHHHHHHC--------------CEEEEECSSSSSSTTTSCHHHHHH
T ss_pred --------------cCCCCEEEEECCCHHHHHHHHHHHHhcC--------------CcEEEEEccCcccccccCHHHHHH
Confidence 01235999999999999999999987 6 899999987 6888 899999999
Q ss_pred HHHHHHhCCCEEEeC-ceEEEeC-C-e--EEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCC
Q 010845 290 ATTQLSKSGVRLVRG-IVKDVDS-Q-K--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSV 363 (499)
Q Consensus 290 ~~~~l~~~gV~v~~~-~v~~v~~-~-~--v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~ 363 (499)
+.+.+++.||+++++ +|.+++. + . +.+++|+++++|.||+|+|++|+ .+++.++++++++|+|.||+++|| +.
T Consensus 208 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t-~~ 286 (472)
T 3iwa_A 208 LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRT-SD 286 (472)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBC-SS
T ss_pred HHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCccc-CC
Confidence 999999999999999 8999875 3 2 67788999999999999999999 577788999999999999999999 99
Q ss_pred CCeEEeccccccccCC-CCCCCCchHHHHHHHHHHHHHHHH
Q 010845 364 QDVFAVGDCSGYLEST-GKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 364 ~~Ifa~GD~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|||||+|||+..+... |....+++++.|.+||+++|+||.
T Consensus 287 ~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 327 (472)
T 3iwa_A 287 PDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLA 327 (472)
T ss_dssp TTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHT
T ss_pred CCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhc
Confidence 9999999999876543 444457789999999999999986
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=346.87 Aligned_cols=302 Identities=23% Similarity=0.347 Sum_probs=244.8
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCCCCC-c-cccchhhhccccccCCCeEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFR-S-VAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 136 (499)
|++|||||||+||+++|..|++. +++|+|||+++++.|.+. ++....+..... . +......+ ....++.+.
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~ 76 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESF----KARFNVEVR 76 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHH----HHHHCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHH----HHhcCcEEE
Confidence 36899999999999999999986 789999999999888753 444444443321 1 22222222 222356664
Q ss_pred -EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHH
Q 010845 137 -LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 137 -~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
..+|+.+|.+.+.+.+.+..++ +..++.||+||||||+.|..|++||.+ ...+.+++..++..+.+.+..
T Consensus 77 ~~~~V~~id~~~~~v~~~~~~~g------~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~-- 148 (565)
T 3ntd_A 77 VKHEVVAIDRAAKLVTVRRLLDG------SEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM-- 148 (565)
T ss_dssp TTEEEEEEETTTTEEEEEETTTC------CEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHH--
T ss_pred ECCEEEEEECCCCEEEEEecCCC------CeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhh--
Confidence 5899999999999988763322 234799999999999999999999984 567788888888777665421
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHH
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQ 293 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~ 293 (499)
...++|+|||||++|+|+|..+.+.+ .+|+++++. ++++.+++++.+.+.+.
T Consensus 149 -------------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~ 201 (565)
T 3ntd_A 149 -------------NNVEHATVVGGGFIGLEMMESLHHLG--------------IKTTLLELADQVMTPVDREMAGFAHQA 201 (565)
T ss_dssp -------------TTCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSCTTSCHHHHHHHHHH
T ss_pred -------------CCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEEcCCccchhcCHHHHHHHHHH
Confidence 23359999999999999999999887 899999987 78899999999999999
Q ss_pred HHhCCCEEEeC-ceEEEeC--------------------C---eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCC
Q 010845 294 LSKSGVRLVRG-IVKDVDS--------------------Q---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSP 348 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~--------------------~---~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~ 348 (499)
+++.||+++++ .|.+++. + .+++++|+++++|.||+|+|++|+ .+++.+++++++
T Consensus 202 l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~ 281 (565)
T 3ntd_A 202 IRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGE 281 (565)
T ss_dssp HHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCT
T ss_pred HHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCC
Confidence 99999999998 8888864 2 466788999999999999999999 577788999999
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccC-CCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~-~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+|+|.||+++|| +.|||||+|||+..++. .|....+++++.|.+||+++|+||.
T Consensus 282 ~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 336 (565)
T 3ntd_A 282 LGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMF 336 (565)
T ss_dssp TSSBCCCTTCBC-SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEECCCccc-CCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhc
Confidence 999999999999 99999999999976653 2444467889999999999999986
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=344.04 Aligned_cols=304 Identities=23% Similarity=0.354 Sum_probs=249.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCccccc-chhhhhccCCCCCc--cccchhhhccccccCCCeE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRS--VAEPIARIQPAISREPGSY 134 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~-~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~ 134 (499)
+.+++|||||||+||+++|..|++. |++|+|||+++.+.|.+ .++....+...... +...+..+ ....++.
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~----~~~~gi~ 109 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERM----SKRFNLD 109 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHH----HHHTTCE
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHH----HHhcCcE
Confidence 4468999999999999999999987 89999999999988875 34544555433221 22333333 2224566
Q ss_pred EE-EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCc-c-ccCccCCCHHHHHHHHHHHH
Q 010845 135 FF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-K-ENATFLREVHHAQEIRRKLL 211 (499)
Q Consensus 135 ~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~-~-~~~~~~~~~~~~~~~~~~~~ 211 (499)
+. ..+|+.++.+.+.+.+.+..++ +...+.||+||+|||+.|..|++||. + +..+..++..++..++..+.
T Consensus 110 v~~~~~V~~id~~~~~v~v~~~~~g------~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~ 183 (588)
T 3ics_A 110 IRVLSEVVKINKEEKTITIKNVTTN------ETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYID 183 (588)
T ss_dssp EECSEEEEEEETTTTEEEEEETTTC------CEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHH
T ss_pred EEECCEEEEEECCCCEEEEeecCCC------CEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHh
Confidence 64 5799999999999988753222 13478999999999999999999998 3 45677888888887766542
Q ss_pred HHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHH
Q 010845 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYA 290 (499)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~ 290 (499)
. ...++++|||||++|+|+|..+...+ .+|+++++. .+++.+++++.+.+
T Consensus 184 ~---------------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l 234 (588)
T 3ics_A 184 E---------------KKPRHATVIGGGFIGVEMVENLRERG--------------IEVTLVEMANQVMPPIDYEMAAYV 234 (588)
T ss_dssp H---------------HCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHH
T ss_pred h---------------cCCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCcccccCCHHHHHHH
Confidence 1 23469999999999999999999887 899999986 78899999999999
Q ss_pred HHHHHhCCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCe
Q 010845 291 TTQLSKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (499)
Q Consensus 291 ~~~l~~~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~I 366 (499)
.+.|++.||+++++ +|.+++. +.|.+++|+++++|.||+|+|++|+ .+++.++++++++|+|.||+++|| +.|+|
T Consensus 235 ~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t-~~~~I 313 (588)
T 3ics_A 235 HEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQT-SDPHI 313 (588)
T ss_dssp HHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBC-SSTTE
T ss_pred HHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCcccc-CCCCE
Confidence 99999999999998 8999987 5799999999999999999999999 488888999999999999999999 99999
Q ss_pred EEeccccccccCC-CCCCCCchHHHHHHHHHHHHHHHH
Q 010845 367 FAVGDCSGYLEST-GKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 367 fa~GD~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
||+|||+..++.. |....+++++.|.+||+++|+||.
T Consensus 314 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 351 (588)
T 3ics_A 314 YAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIH 351 (588)
T ss_dssp EECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred EEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhc
Confidence 9999999765532 444457899999999999999986
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=336.32 Aligned_cols=298 Identities=23% Similarity=0.315 Sum_probs=228.9
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
+++|||||||+||+++|..|++. +++|+|||+++.+.|.+. ++....+......+..... ..+....++.++.+
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~gi~v~~~ 79 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPP---EVFIKKRGIDLHLN 79 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---------------------------CTHHHHTTCEEETT
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCH---HHHHHhcCcEEEec
Confidence 57999999999999999999986 789999999998777653 3333333322222221111 11222356777776
Q ss_pred -EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
+|+.++.+.+.+.+.+ + ..++.||+||+|||+.|..|++||.+ +.++...+..++..+.+.+.
T Consensus 80 ~~v~~i~~~~~~v~~~~---g-------~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~----- 144 (449)
T 3kd9_A 80 AEVIEVDTGYVRVRENG---G-------EKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYME----- 144 (449)
T ss_dssp CEEEEECSSEEEEECSS---S-------EEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHS-----
T ss_pred CEEEEEecCCCEEEECC---c-------eEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHH-----
Confidence 8999988776664322 1 24799999999999999999999985 45667777777777665431
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-CCHHHHHHHHHHH
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQL 294 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-~~~~~~~~~~~~l 294 (499)
....++++|||||++|+|+|..+.+.+ .+|+++++. ++++. +++++.+.+.+.+
T Consensus 145 ----------~~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 200 (449)
T 3kd9_A 145 ----------KYKVENVVIIGGGYIGIEMAEAFAAQG--------------KNVTMIVRGERVLRRSFDKEVTDILEEKL 200 (449)
T ss_dssp ----------SSCCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHHHH
T ss_pred ----------hcCCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEcCCccchhhcCHHHHHHHHHHH
Confidence 013469999999999999999999887 899999987 68887 9999999999999
Q ss_pred HhCCCEEEeC-ceEEEeCCe---EEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEe
Q 010845 295 SKSGVRLVRG-IVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~~---v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~ 369 (499)
++. |+++.+ .|.+++.+. ..+.+++++++|.||+|+|++|+ ++++.++++++++|+|.||+++|| +.|||||+
T Consensus 201 ~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~ 278 (449)
T 3kd9_A 201 KKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQT-SVENVYAA 278 (449)
T ss_dssp TTT-SEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBC-SSTTEEEC
T ss_pred HhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCcc-CCCCEEEe
Confidence 999 999999 899998653 34567889999999999999999 578888999999999999999999 99999999
Q ss_pred ccccccccC-CCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 370 GDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 370 GD~a~~~~~-~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|||+..++. .|.+..+++++.|.+||+++|+||.
T Consensus 279 GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~ 313 (449)
T 3kd9_A 279 GDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIA 313 (449)
T ss_dssp STTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT
T ss_pred eeeeeeccccCCceEEeccHHHHHHHHHHHHHHhc
Confidence 999976553 2444457899999999999999985
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=329.58 Aligned_cols=302 Identities=20% Similarity=0.325 Sum_probs=238.8
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCCC-CCccccchhhhccccccCCCeEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLE-FRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
+++|||||||+||+++|..|++. |.+|+|||+++.+.|.+. ++....+... ...+.....+ .+.+..++.++.
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~gv~~~~ 112 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVK---TFRDKYGIDAKV 112 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHH---HHHHTTCCEEES
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHH---HHHhhcCCEEEe
Confidence 46999999999999999999885 899999999988776653 4444333322 2222221111 122334677766
Q ss_pred -EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHh
Q 010845 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (499)
Q Consensus 138 -~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (499)
.+|+.++.+.+.|.+....++ +..++.||+||+|||+.|..|++||.+ +.++++.+.+++.++++.+.+
T Consensus 113 ~~~v~~i~~~~~~v~v~~~~~g------~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~--- 183 (480)
T 3cgb_A 113 RHEVTKVDTEKKIVYAEHTKTK------DVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLET--- 183 (480)
T ss_dssp SEEEEEEETTTTEEEEEETTTC------CEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHS---
T ss_pred CCEEEEEECCCCEEEEEEcCCC------ceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhh---
Confidence 799999999998887652222 123799999999999999999999985 456778888888887765420
Q ss_pred hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHH
Q 010845 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL 294 (499)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l 294 (499)
...++|+|||||++|+|+|..+.+.+ .+|+++++. .+++.+++++.+.+.+.+
T Consensus 184 ------------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l 237 (480)
T 3cgb_A 184 ------------NKVEDVTIIGGGAIGLEMAETFVELG--------------KKVRMIERNDHIGTIYDGDMAEYIYKEA 237 (480)
T ss_dssp ------------SCCCEEEEECCHHHHHHHHHHHHHTT--------------CEEEEECCGGGTTSSSCHHHHHHHHHHH
T ss_pred ------------cCCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeCCchhhcCCHHHHHHHHHHH
Confidence 13359999999999999999999877 899999987 688889999999999999
Q ss_pred HhCCCEEEeC-ceEEEeCCe----EEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEE
Q 010845 295 SKSGVRLVRG-IVKDVDSQK----LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~~----v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
++.||+++.+ +|.+++.+. +.+ ++.++++|.||+|+|.+|+ ++++.++++++++|+|.||+++|| +.|+|||
T Consensus 238 ~~~Gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~t-s~p~IyA 315 (480)
T 3cgb_A 238 DKHHIEILTNENVKAFKGNERVEAVET-DKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQT-NVQDVYA 315 (480)
T ss_dssp HHTTCEEECSCCEEEEEESSBEEEEEE-TTEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBC-SSTTEEE
T ss_pred HHcCcEEEcCCEEEEEEcCCcEEEEEE-CCCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccC-CCCCEEE
Confidence 9999999998 899887542 344 4568999999999999998 588888999988999999999999 8999999
Q ss_pred eccccccccCC-CCCCCCchHHHHHHHHHHHHHHHH
Q 010845 369 VGDCSGYLEST-GKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 369 ~GD~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+|||+..+... |....+++++.|.+||+++|+||.
T Consensus 316 ~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 351 (480)
T 3cgb_A 316 AGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNML 351 (480)
T ss_dssp CGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT
T ss_pred eeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhc
Confidence 99999765432 333346789999999999999985
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=329.40 Aligned_cols=298 Identities=21% Similarity=0.325 Sum_probs=235.2
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCC---CCCccccchhhhccccccCCCeEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL---EFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
++|||||||+||+++|..|++. |++|+|||+++...|.+. ++....+.. .+..+...+... +. ..++.++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~-~~gv~~~ 76 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEE---LS-NLGANVQ 76 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHH---HH-HTTCEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHH---HH-HcCCEEE
Confidence 4799999999999999999987 999999999987766653 232333332 233332222222 22 2467774
Q ss_pred E-EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHH
Q 010845 137 L-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 137 ~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
. .+|..++.+.+.+.+.+..++ +..++.||+||+|||+.|..|++||.+ +.+++++++.++..+.+..
T Consensus 77 ~~~~v~~i~~~~~~v~v~~~~~g------~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~---- 146 (452)
T 2cdu_A 77 MRHQVTNVDPETKTIKVKDLITN------EEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEA---- 146 (452)
T ss_dssp ESEEEEEEEGGGTEEEEEETTTC------CEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHG----
T ss_pred eCCEEEEEEcCCCEEEEEecCCC------ceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHh----
Confidence 4 579999998898888652211 125799999999999999999999985 4677788888887776542
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHH
Q 010845 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~ 292 (499)
...++++|||+|++|+|+|..+.+.+ .+|+++++. ++++ .+++++.+.+.+
T Consensus 147 -------------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 199 (452)
T 2cdu_A 147 -------------PKAKTITIIGSGYIGAELAEAYSNQN--------------YNVNLIDGHERVLYKYFDKEFTDILAK 199 (452)
T ss_dssp -------------GGCSEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred -------------ccCCeEEEECcCHHHHHHHHHHHhcC--------------CEEEEEEcCCchhhhhhhhhHHHHHHH
Confidence 23459999999999999999998876 899999987 6787 799999999999
Q ss_pred HHHhCCCEEEeC-ceEEEeC--CeE--EECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCe
Q 010845 293 QLSKSGVRLVRG-IVKDVDS--QKL--ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~--~~v--~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~I 366 (499)
.+++.||+++++ +|.+++. +.+ ...+|+++++|.||+|+|.+|+ .+++.. ++++++|+|.||+++|| +.|||
T Consensus 200 ~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t-~~~~I 277 (452)
T 2cdu_A 200 DYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHS-SNRDI 277 (452)
T ss_dssp HHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBC-SSTTE
T ss_pred HHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCc-CCCCE
Confidence 999999999999 8999875 333 2347889999999999999999 566666 88888899999999999 99999
Q ss_pred EEeccccccccC-CCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 367 FAVGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 367 fa~GD~a~~~~~-~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
||+|||+..+.. .|....+++++.|.+||+++|+||.
T Consensus 278 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 315 (452)
T 2cdu_A 278 FAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLT 315 (452)
T ss_dssp EECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred EEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhC
Confidence 999999976432 2222346789999999999999985
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=328.71 Aligned_cols=293 Identities=24% Similarity=0.349 Sum_probs=231.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCcccc-c-chhhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-P-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~-~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
+++|||||||+||+++|..|++.|+ +|+|||+++.+.|. + +...+..+......+.....+. + ...++.++.
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~-~~~gv~~~~ 79 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDA---Y-AAQNIQLLG 79 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHH---H-HHTTEEEEC
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHH---H-HhCCCEEEe
Confidence 4799999999999999999999988 79999999877665 2 2222333333333222222222 2 225788776
Q ss_pred E-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-cc---CccCCCHHHHHHHHHHHHH
Q 010845 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-EN---ATFLREVHHAQEIRRKLLL 212 (499)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~---~~~~~~~~~~~~~~~~~~~ 212 (499)
+ +|+.++.+.+.|.+.+ + .++.||+||+|||+.|+.|++||.+ +. ++.+.+.+++..+++.+
T Consensus 80 ~~~v~~i~~~~~~v~~~~---g--------~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l-- 146 (431)
T 1q1r_A 80 GTQVTAINRDRQQVILSD---G--------RALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQL-- 146 (431)
T ss_dssp SCCEEEEETTTTEEEETT---S--------CEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTC--
T ss_pred CCEEEEEECCCCEEEECC---C--------CEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHh--
Confidence 4 7899999888887754 2 3799999999999999999999975 33 66678888887765542
Q ss_pred HHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-CCHHHHHHH
Q 010845 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYA 290 (499)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-~~~~~~~~~ 290 (499)
...++|+|||||++|+|+|..|.+.+ .+|+++++. .+++. +++++.+.+
T Consensus 147 ---------------~~~~~vvViGgG~~g~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~~~~~~~~~l 197 (431)
T 1q1r_A 147 ---------------IADNRLVVIGGGYIGLEVAATAIKAN--------------MHVTLLDTAARVLERVTAPPVSAFY 197 (431)
T ss_dssp ---------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHHH
T ss_pred ---------------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEEeCCccccchhhHHHHHHH
Confidence 12359999999999999999999887 899999987 67764 899999999
Q ss_pred HHHHHhCCCEEEeC-ceEEEeC----C---eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCC
Q 010845 291 TTQLSKSGVRLVRG-IVKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVP 361 (499)
Q Consensus 291 ~~~l~~~gV~v~~~-~v~~v~~----~---~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~ 361 (499)
.+.+++.||+++++ +|.+++. + .|.+++|+++++|.||+|+|.+|+ ++++.++++.+ +| |.||+++||
T Consensus 198 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~t- 274 (431)
T 1q1r_A 198 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NG-IVINEHMQT- 274 (431)
T ss_dssp HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EECCTTSBC-
T ss_pred HHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CC-EEECCCccc-
Confidence 99999999999999 8999874 2 477889999999999999999999 68888898876 45 999999999
Q ss_pred CCCCeEEeccccccccCC-CCCCCCchHHHHHHHHHHHHHHHH
Q 010845 362 SVQDVFAVGDCSGYLEST-GKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 362 ~~~~Ifa~GD~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+.|+|||+|||+..+.+. |......+++.|.+||+.+|+||.
T Consensus 275 s~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 317 (431)
T 1q1r_A 275 SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILC 317 (431)
T ss_dssp SSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhc
Confidence 999999999999865321 222223578999999999999985
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=322.51 Aligned_cols=299 Identities=24% Similarity=0.344 Sum_probs=234.3
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCC-CCCccccchhhhccccccCCCeEE-EE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL-EFRSVAEPIARIQPAISREPGSYF-FL 137 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 137 (499)
++|||||||+||+++|..|++. |++|+|||+++.+.|.+. ++....+.. ....+.....+. +.. .++.+ ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~gv~~~~~ 76 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEK---MES-RGVNVFSN 76 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHH---HHH-TTCEEEET
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHH---HHH-CCCEEEEC
Confidence 4799999999999999999986 899999999988777653 333333432 233333222222 222 46776 45
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
.+|+.++.+.+.|.+.+..++ +..++.||+||||||+.|..|++||.+ ++++++++..++..+++.+.
T Consensus 77 ~~v~~i~~~~~~v~~~~~~~g------~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~----- 145 (447)
T 1nhp_A 77 TEITAIQPKEHQVTVKDLVSG------EERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV----- 145 (447)
T ss_dssp EEEEEEETTTTEEEEEETTTC------CEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHT-----
T ss_pred CEEEEEeCCCCEEEEEecCCC------ceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhh-----
Confidence 789999999999888652222 123589999999999999999999985 45777788888877765531
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHH
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQL 294 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l 294 (499)
....++++|||+|++|+|+|..+++.+ .+|+++++. .+++ .+++++.+.+.+.+
T Consensus 146 ----------~~~~~~vvIiG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 201 (447)
T 1nhp_A 146 ----------DPEVNNVVVIGSGYIGIEAAEAFAKAG--------------KKVTVIDILDRPLGVYLDKEFTDVLTEEM 201 (447)
T ss_dssp ----------CTTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTCCHHHHHHHHHHH
T ss_pred ----------hcCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCcccccccCCHHHHHHHHHHH
Confidence 012359999999999999999999877 899999987 6777 68999999999999
Q ss_pred HhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEE
Q 010845 295 SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
++.||+++++ +|.+++.+ .+.+ +++++++|.||+|+|.+|+ ++++.. ++++++|+|.||+++|| +.|+|||
T Consensus 202 ~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t-~~~~Iya 278 (447)
T 1nhp_A 202 EANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRT-SEPDVFA 278 (447)
T ss_dssp HTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBC-SSTTEEE
T ss_pred HhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccC-CCCCEEE
Confidence 9999999998 89999764 2444 5678999999999999999 566666 77788899999999999 9999999
Q ss_pred eccccccccC-CCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 369 VGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 369 ~GD~a~~~~~-~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+|||+..+.. .|....+++++.|.+||+++|+||.
T Consensus 279 ~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 314 (447)
T 1nhp_A 279 VGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE 314 (447)
T ss_dssp CGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred eeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhc
Confidence 9999975432 1222346789999999999999975
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=317.81 Aligned_cols=287 Identities=20% Similarity=0.329 Sum_probs=228.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcccc-cchhhhhccCCCCCcccc-chhhhccccccCCCeEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAE-PIARIQPAISREPGSYFFL 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~~-~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 137 (499)
+++|+|||||+||+++|..|++.| .+|+|||+++...|. +.+.....+......+.. .+.. +....++.++.
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~ 79 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGA----MAEQLNARILT 79 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHH----HHHHTTCEEEC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHH----HHHhCCcEEEe
Confidence 478999999999999999999988 569999998765554 444433322222222211 1122 22235677774
Q ss_pred -EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHh
Q 010845 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (499)
Q Consensus 138 -~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (499)
.+|+.++.+.+.|.+.+ .++.||+||+|||+.|..|++||.+ +.+++.+++.+...++..+
T Consensus 80 ~~~v~~i~~~~~~v~~~~------------~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~----- 142 (384)
T 2v3a_A 80 HTRVTGIDPGHQRIWIGE------------EEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAA----- 142 (384)
T ss_dssp SCCCCEEEGGGTEEEETT------------EEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCEEEECC------------cEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhh-----
Confidence 57899998888887643 3799999999999999999999975 5678888988887776554
Q ss_pred hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-CCHHHHHHHHHH
Q 010845 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQ 293 (499)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-~~~~~~~~~~~~ 293 (499)
...++++|||+|++|+|+|..+.+.+ .+|+++++. .+++. +++++.+.+.+.
T Consensus 143 ------------~~~~~v~ViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 196 (384)
T 2v3a_A 143 ------------AGKRRVLLLGAGLIGCEFANDLSSGG--------------YQLDVVAPCEQVMPGLLHPAAAKAVQAG 196 (384)
T ss_dssp ------------TTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTSCHHHHHHHHHH
T ss_pred ------------ccCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCcchhhcccCHHHHHHHHHH
Confidence 12359999999999999999999887 899999987 67776 488999999999
Q ss_pred HHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCCCeE
Q 010845 294 LSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~If 367 (499)
+++.||+++.+ +|.+++.+ .+++++|+++++|.||+|+|.+|+. +++.++++.+ +| |.||+++|| +.|+||
T Consensus 197 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~-~g-i~vd~~~~t-~~~~Iy 273 (384)
T 2v3a_A 197 LEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN-RG-IVVDRSLRT-SHANIY 273 (384)
T ss_dssp HHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBS-SS-EEECTTCBC-SSTTEE
T ss_pred HHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCC-CC-EEECCCCCC-CCCCEE
Confidence 99999999999 89888642 5777889999999999999999994 8888899887 57 999999998 999999
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|+|||+.... . ..+.+..|.+||+.+|+||.
T Consensus 274 A~GD~~~~~~----~-~~~~~~~a~~~g~~~a~~i~ 304 (384)
T 2v3a_A 274 ALGDCAEVDG----L-NLLYVMPLMACARALAQTLA 304 (384)
T ss_dssp ECGGGEEETT----B-CCCSHHHHHHHHHHHHHHHT
T ss_pred EeeeeeeECC----C-CcchHHHHHHHHHHHHHHhc
Confidence 9999996421 1 13457789999999999985
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=325.79 Aligned_cols=295 Identities=20% Similarity=0.305 Sum_probs=222.0
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCC-CCCccccchhhhccccccCCCeEEE-E
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL-EFRSVAEPIARIQPAISREPGSYFF-L 137 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (499)
++|||||||+||+++|..|++. |++|+|||+++.+.|.+. +.....+.. ....+....... +.+ .++.++ .
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~gi~~~~~ 78 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEE---LRR-QKIQLLLN 78 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHH---HHH-TTEEEECS
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHH---HHH-CCCEEEEC
Confidence 5899999999999999999987 899999999998887653 233333322 222222222222 122 466664 5
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
.+|+.+|.+.+.+.+.... + ..++.||+||||||+.|..|++||.+ +.++..+++.++..+....
T Consensus 79 ~~V~~id~~~~~v~v~~~~-~-------~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~------ 144 (452)
T 3oc4_A 79 REVVAMDVENQLIAWTRKE-E-------QQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLL------ 144 (452)
T ss_dssp CEEEEEETTTTEEEEEETT-E-------EEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHH------
T ss_pred CEEEEEECCCCEEEEEecC-c-------eEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHH------
Confidence 7999999999998875211 1 35899999999999999999999985 4455555555554433322
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-CCHHHHHHHHHHH
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQL 294 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-~~~~~~~~~~~~l 294 (499)
...++++|||+|++|+|+|..+.+++ .+|+++++. ++++. +++++.+.+.+.+
T Consensus 145 -----------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l 199 (452)
T 3oc4_A 145 -----------ENSQTVAVIGAGPIGMEAIDFLVKMK--------------KTVHVFESLENLLPKYFDKEMVAEVQKSL 199 (452)
T ss_dssp -----------HTCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTCCHHHHHHHHHHH
T ss_pred -----------hcCCEEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCccccccCCHHHHHHHHHHH
Confidence 22359999999999999999999887 899999987 67875 8999999999999
Q ss_pred HhCCCEEEeC-ceEEEe--CCe--EEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCCCeEE
Q 010845 295 SKSGVRLVRG-IVKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~--~~~--v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
++.||+++++ +|++++ ++. |.++++ ++++|.||+|+|++|+. +++. .++++++|+|.||+++|| +.|+|||
T Consensus 200 ~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~-~~~~~~~g~i~vd~~~~t-~~~~IyA 276 (452)
T 3oc4_A 200 EKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQT-SVPNVFA 276 (452)
T ss_dssp HTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCT-TSCBCTTSCBCCCTTCBC-SSTTEEE
T ss_pred HHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHh-hhccCCCCCEEECcCccC-CCCCEEE
Confidence 9999999999 899997 333 566666 89999999999999994 5544 377888999999999999 9999999
Q ss_pred eccccccccC-CCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 369 VGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 369 ~GD~a~~~~~-~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+|||+..+.. .|....+++++.|..||+.+|+||.
T Consensus 277 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 312 (452)
T 3oc4_A 277 IGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLE 312 (452)
T ss_dssp CGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSS
T ss_pred EEeeEEeccccCCceeecchHHHHHHHHHHHHHHhc
Confidence 9999975421 2223346789999999999999875
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=328.00 Aligned_cols=320 Identities=17% Similarity=0.249 Sum_probs=234.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccc-cch-hhhhccCCC-------------CC-cc-ccchh
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFT-PLL-ASTCVGTLE-------------FR-SV-AEPIA 121 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~-~~~-~~~~~g~~~-------------~~-~~-~~~~~ 121 (499)
.+++|||||||+||++||..|++. +.+|+|||+++++.|. |.+ ..+..+... .. .+ ..+..
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 89 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence 357899999999999999998765 8899999999887765 222 111111100 00 00 00000
Q ss_pred hhc--cccc--cCCCeEEEEE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCc-----c
Q 010845 122 RIQ--PAIS--REPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-----K 191 (499)
Q Consensus 122 ~~~--~~~~--~~~~~~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~-----~ 191 (499)
.+. ..+. ...++.++.+ +|+.||.+.+.|.+.+ + .++.||+||||||++|+.++++|. .
T Consensus 90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~---g--------~~i~yd~lviATGs~p~~~~~~~~~~~~~~ 158 (493)
T 1m6i_A 90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLND---G--------SQITYEKCLIATGGTPRSLSAIDRAGAEVK 158 (493)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETT---S--------CEEEEEEEEECCCEEECCCHHHHTSCHHHH
T ss_pred hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECC---C--------CEEECCEEEECCCCCCCCCCCccccccccc
Confidence 000 0010 1357888875 9999999989888754 2 379999999999999987766552 2
Q ss_pred ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEE
Q 010845 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (499)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vt 271 (499)
+.++.+++.+++..++..+ ...++|+|||||++|+|+|..|++.+.+ .+.+|+
T Consensus 159 ~~v~~~~~~~d~~~l~~~~-----------------~~~~~vvViGgG~iG~E~A~~l~~~~~~----------~g~~V~ 211 (493)
T 1m6i_A 159 SRTTLFRKIGDFRSLEKIS-----------------REVKSITIIGGGFLGSELACALGRKARA----------LGTEVI 211 (493)
T ss_dssp HTEEECCSHHHHHHHHHHH-----------------HHCSEEEEECCSHHHHHHHHHHHHHHHH----------HTCEEE
T ss_pred CceEEEcCHHHHHHHHHHh-----------------hcCCeEEEECCCHHHHHHHHHHHhhhhh----------cCCEEE
Confidence 3566788888888776654 2346999999999999999999886521 027899
Q ss_pred EEeCC-CcC-CCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc-hhcccCC
Q 010845 272 LIEAN-EIL-SSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD 343 (499)
Q Consensus 272 lv~~~-~~l-~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~ 343 (499)
++++. ..+ ..+++.+.+.+.+.+++.||+++++ +|.+++. + .|++++|++++||.||+|+|.+|+ .+++.++
T Consensus 212 ~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~g 291 (493)
T 1m6i_A 212 QLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGG 291 (493)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHT
T ss_pred EEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcC
Confidence 99876 344 4578899999999999999999999 8998864 2 477889999999999999999999 4778889
Q ss_pred CCCCC-CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCC
Q 010845 344 LPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELG 422 (499)
Q Consensus 344 l~~~~-~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~ 422 (499)
+++++ +|+|.||++||+ .|||||+|||+..+...-+.....+++.|..||+.+|+||... . .++..
T Consensus 292 l~~~~~~ggi~Vd~~l~t--~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~------~----~~~~~- 358 (493)
T 1m6i_A 292 LEIDSDFGGFRVNAELQA--RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGA------A----KPYWH- 358 (493)
T ss_dssp CCBCTTTCSEECCTTCEE--ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSC------C----CCCCC-
T ss_pred CccccCCCcEEECCCccc--CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCC------C----CCcCC-
Confidence 98875 688999999998 5999999999986543211223557889999999999998521 1 12232
Q ss_pred CCceecccc
Q 010845 423 DPFVYRHLG 431 (499)
Q Consensus 423 ~~~~~~~~g 431 (499)
.|+.+.++|
T Consensus 359 ~~~~~s~~~ 367 (493)
T 1m6i_A 359 QSMFWSDLG 367 (493)
T ss_dssp CCEEEEESS
T ss_pred cCceeeeec
Confidence 677777665
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=317.53 Aligned_cols=289 Identities=23% Similarity=0.331 Sum_probs=213.8
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCeEEEEcC--------CCCcccccc----hhh-----------hh-----ccC--
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSP--------RNHMVFTPL----LAS-----------TC-----VGT-- 110 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~--------~~~~~~~~~----~~~-----------~~-----~g~-- 110 (499)
+++|+|||||+||+++|..|++ .|++|+|||+ ++.+..... .+. .. .|.
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~ 86 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF 86 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence 4799999999999999999999 9999999992 333221100 000 00 000
Q ss_pred ------CCCCccccchhhh--------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEE
Q 010845 111 ------LEFRSVAEPIARI--------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (499)
Q Consensus 111 ------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LVi 176 (499)
.+...+....+.+ ...+....+++++.++++.++. +.|.+....+. ..+....+.||+|||
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~---~~~~~~~~~~d~lVi 161 (495)
T 2wpf_A 87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESK--NVVVVRETADP---KSAVKERLQADHILL 161 (495)
T ss_dssp CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEET--TEEEEESSSST---TSCEEEEEEEEEEEE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeC--CEEEEeecCCc---cCCCCeEEEcCEEEE
Confidence 0000010000100 0112222289999998888864 67777521110 000024799999999
Q ss_pred cCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHH---H
Q 010845 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF---I 253 (499)
Q Consensus 177 AtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~---~ 253 (499)
|||+.|..|++||. ++.+ +..+. +..... .++++|||||++|+|+|..|.++ +
T Consensus 162 ATGs~p~~p~i~G~-~~~~---~~~~~----------~~~~~~----------~~~vvViGgG~ig~E~A~~l~~~~~~g 217 (495)
T 2wpf_A 162 ATGSWPQMPAIPGI-EHCI---SSNEA----------FYLPEP----------PRRVLTVGGGFISVEFAGIFNAYKPPG 217 (495)
T ss_dssp CCCEEECCCCCTTG-GGCE---EHHHH----------TTCSSC----------CSEEEEECSSHHHHHHHHHHHHHCCTT
T ss_pred eCCCCcCCCCCCCc-cccc---cHHHH----------Hhhhhc----------CCeEEEECCCHHHHHHHHHHHhhCCCC
Confidence 99999999999997 3322 22221 111122 35999999999999999999887 6
Q ss_pred HHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeE
Q 010845 254 MRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGL 326 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~ 326 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .|++++|+++++|.
T Consensus 218 --------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~ 283 (495)
T 2wpf_A 218 --------------GKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDV 283 (495)
T ss_dssp --------------CEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESE
T ss_pred --------------CeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCE
Confidence 899999997 7889999999999999999999999999 89998643 47788899999999
Q ss_pred EEEcCCCCcch--h-cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 327 LVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 327 vi~a~G~~p~~--~-~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
||+|+|++|+. + ++.++++++++|+|.||+++|| +.|||||+|||+. . +++++.|.+||+++|.||.
T Consensus 284 vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~------~---~~l~~~A~~~g~~aa~~i~ 353 (495)
T 2wpf_A 284 VMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRT-NVPNIYAIGDITD------R---LMLTPVAINEGAALVDTVF 353 (495)
T ss_dssp EEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBC-SSTTEEECGGGGC------S---CCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCcccccccchhhcCccCCCCCCEEECCCCcc-CCCCEEEEeccCC------C---ccCHHHHHHHHHHHHHHhc
Confidence 99999999994 3 5778999998999999999999 9999999999994 1 6789999999999999986
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=322.26 Aligned_cols=312 Identities=19% Similarity=0.226 Sum_probs=230.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhhh--------------------hccCCC----
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAST--------------------CVGTLE---- 112 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~~--------------------~~g~~~---- 112 (499)
.+++|||||||+||+++|.+|++.|++|+|||+++.+..... .+.. ......
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 121 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVG 121 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhh
Confidence 457999999999999999999999999999999875432210 0000 000000
Q ss_pred CCccccchhhhcc---ccc-----cCCCeEEE-EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010845 113 FRSVAEPIARIQP---AIS-----REPGSYFF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 113 ~~~~~~~~~~~~~---~~~-----~~~~~~~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
.+.+...+..... .+. ...++.++ .+++..++. +.+.+. + ..+.||+||+|||+.|.
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~----g--------~~~~~d~lViATGs~p~ 187 (523)
T 1mo9_A 122 IKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA----G--------KVFKAKNLILAVGAGPG 187 (523)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET----T--------EEEEBSCEEECCCEECC
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC----C--------EEEEeCEEEECCCCCCC
Confidence 0111111111111 111 34567777 778888875 566553 1 37899999999999999
Q ss_pred CCCCCCcccc-CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcC
Q 010845 184 TFGIHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (499)
Q Consensus 184 ~~~ipG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~ 262 (499)
.|++||.+.. ++ +..+.. . .....| .++++|||||++|+|+|..+.+.+
T Consensus 188 ~p~i~G~~~~~v~---~~~~~~---~------~l~~~~---------g~~vvViGgG~~g~E~A~~l~~~G--------- 237 (523)
T 1mo9_A 188 TLDVPGVNAKGVF---DHATLV---E------ELDYEP---------GSTVVVVGGSKTAVEYGCFFNATG--------- 237 (523)
T ss_dssp CCCSTTTTSBTEE---EHHHHH---H------HCCSCC---------CSEEEEECCSHHHHHHHHHHHHTT---------
T ss_pred CCCCCCcccCcEe---eHHHHH---H------HHHhcC---------CCeEEEECCCHHHHHHHHHHHHcC---------
Confidence 9999997542 22 222222 0 111222 159999999999999999999887
Q ss_pred CCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce------EEECCCc-EEeeeEEEEcC
Q 010845 263 HVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK------LILNDGT-EVPYGLLVWST 331 (499)
Q Consensus 263 ~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~------v~~~~g~-~i~~D~vi~a~ 331 (499)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|.+++. ++ |.+++|+ ++++|.||+|+
T Consensus 238 -----~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~ 312 (523)
T 1mo9_A 238 -----RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL 312 (523)
T ss_dssp -----CEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred -----CeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECc
Confidence 899999987 7889999999999999999999999999 8999864 33 5667887 89999999999
Q ss_pred CCCcch--hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Q 010845 332 GVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAG 409 (499)
Q Consensus 332 G~~p~~--~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~ 409 (499)
|.+|+. +++.++++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+++|.||...
T Consensus 313 G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~---- 378 (523)
T 1mo9_A 313 GEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIGG---------PMEMFKARKSGCYAARNVMGE---- 378 (523)
T ss_dssp CCEECCHHHHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGCS---------SCSHHHHHHHHHHHHHHHTTC----
T ss_pred CCccCCccCHHHcCCccCCCCCEEECCCCcc-CCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHHcCC----
Confidence 999995 68888999998999999999999 99999999999952 578899999999999998531
Q ss_pred CCCCCCcCcCCCCCCceecccceEEEecCCc
Q 010845 410 GGRANSAKDMELGDPFVYRHLGSMATIGRYK 440 (499)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~~ 440 (499)
... -.... .|+......+++++|...
T Consensus 379 -~~~---~~~~~-~p~~~~~~~~~a~vG~~e 404 (523)
T 1mo9_A 379 -KIS---YTPKN-YPDFLHTHYEVSFLGMGE 404 (523)
T ss_dssp -CCC---CCCCS-CCEEEESSSEEEEEECCH
T ss_pred -CCC---CCCCC-CCeEEECCCceEEEeCCH
Confidence 110 01122 566665666889988643
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=300.10 Aligned_cols=288 Identities=21% Similarity=0.264 Sum_probs=208.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCcc-ccchhhhccccccCCCeEEEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV-AEPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
+++|+|||||+||+++|..|++.|++|+|||++ .................... ...+...........++.++.++|
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 92 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIV 92 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESCE
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 479999999999999999999999999999997 21111100000000111100 011111111122234666766899
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc---cCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
++++.+.+.+.+...+ ..++.||+||+|||+.|..|.+||.+. .........+.
T Consensus 93 ~~i~~~~~~~~v~~~~---------g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~-------------- 149 (323)
T 3f8d_A 93 EKIENRGDEFVVKTKR---------KGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADA-------------- 149 (323)
T ss_dssp EEEEEC--CEEEEESS---------SCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHG--------------
T ss_pred EEEEecCCEEEEEECC---------CCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCH--------------
Confidence 9999887665555421 137999999999999999999999754 22222111110
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHh
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~ 296 (499)
.....++|+|||+|++|+|+|..|.+.+ .+|+++++. .+++ ++. .+.+.+++
T Consensus 150 --------~~~~~~~v~vvG~G~~~~e~a~~l~~~g--------------~~v~~~~~~~~~~~--~~~---~~~~~~~~ 202 (323)
T 3f8d_A 150 --------PLFKNRVVAVIGGGDSALEGAEILSSYS--------------TKVYLIHRRDTFKA--QPI---YVETVKKK 202 (323)
T ss_dssp --------GGGTTCEEEEECCSHHHHHHHHHHHHHS--------------SEEEEECSSSSCCS--CHH---HHHHHHTC
T ss_pred --------hHcCCCEEEEECCCHHHHHHHHHHHHhC--------------CeEEEEEeCCCCCc--CHH---HHHHHHhC
Confidence 0123359999999999999999999876 899999987 4444 232 23333445
Q ss_pred CCCEEEeC-ceEEEeCC----eEEECC---Cc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCC
Q 010845 297 SGVRLVRG-IVKDVDSQ----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQD 365 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~----~v~~~~---g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~ 365 (499)
.||+++.+ .|.+++.+ .|++.+ |+ ++++|.||+|+|++|+ ++++.++++.+++|+|.||+++|| +.||
T Consensus 203 ~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t-~~~~ 281 (323)
T 3f8d_A 203 PNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRT-SVPG 281 (323)
T ss_dssp TTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBC-SSTT
T ss_pred CCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCcee-cCCC
Confidence 69999999 79999765 477765 76 7999999999999999 788889999999999999999999 9999
Q ss_pred eEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010845 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 366 Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
|||+|||+..+ ..++++..|..||+.+|.||...+..
T Consensus 282 vya~GD~~~~~------~~~~~~~~A~~~g~~aa~~i~~~l~~ 318 (323)
T 3f8d_A 282 VFAAGDCTSAW------LGFRQVITAVAQGAVAATSAYRYVTE 318 (323)
T ss_dssp EEECSTTBSTT------TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcceecCCC------CcccceeehhhHHHHHHHHHHHHHHH
Confidence 99999999632 24788999999999999999998873
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=315.40 Aligned_cols=315 Identities=20% Similarity=0.282 Sum_probs=227.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhc---------------------cCCCCCccccc-
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV---------------------GTLEFRSVAEP- 119 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~---------------------g~~~~~~~~~~- 119 (499)
+++|+|||||+||+++|..|++.|++|+|||+++.+........... ...+...+...
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRK 83 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence 47999999999999999999999999999998876543311110000 00111111100
Q ss_pred -----hh--hhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc
Q 010845 120 -----IA--RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE 192 (499)
Q Consensus 120 -----~~--~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~ 192 (499)
+. .....+....++.++.+++..++.+...|...+ + +..++.||+||+|||+.|..|++||.+
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~---g------~~~~~~~d~lviAtG~~p~~p~i~G~~- 153 (466)
T 3l8k_A 84 DYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDE---G------KEIEAETRYMIIASGAETAKLRLPGVE- 153 (466)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETT---S------CEEEEEEEEEEECCCEEECCCCCTTGG-
T ss_pred HhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCC---C------cEEEEecCEEEECCCCCccCCCCCCcc-
Confidence 11 111223345789999999999987644443322 1 112399999999999999999999985
Q ss_pred cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEE
Q 010845 193 NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272 (499)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtl 272 (499)
. +.+..+...++.. .. ...++++|||||++|+|+|..+.+++ .+|++
T Consensus 154 ~---~~t~~~~~~~~~~------l~----------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtl 200 (466)
T 3l8k_A 154 Y---CLTSDDIFGYKTS------FR----------KLPQDMVIIGAGYIGLEIASIFRLMG--------------VQTHI 200 (466)
T ss_dssp G---SBCHHHHHSTTCS------CC----------SCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEE
T ss_pred c---eEeHHHHHHHHHH------Hh----------hCCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEE
Confidence 2 3344443321111 11 12359999999999999999999887 89999
Q ss_pred EeCC-CcCCCC-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC---Ce--EEEC--CCc--EEeeeEEEEcCCCCcchh--
Q 010845 273 IEAN-EILSSF-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QK--LILN--DGT--EVPYGLLVWSTGVGPSTL-- 338 (499)
Q Consensus 273 v~~~-~~l~~~-~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---~~--v~~~--~g~--~i~~D~vi~a~G~~p~~~-- 338 (499)
+++. ++++.+ ++++.+.+.+.++ |+++++ +|.+++. +. +.++ +|+ ++++|.||+|+|++|+..
T Consensus 201 v~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~ 277 (466)
T 3l8k_A 201 IEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEG 277 (466)
T ss_dssp ECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTT
T ss_pred EEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccc
Confidence 9986 788888 9999999988887 999998 8888876 33 5666 565 899999999999999954
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCc
Q 010845 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKD 418 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~ 418 (499)
++.++++++++| |.||+++|| +.|||||+|||+.. |+++..|..||+.+|.||..... .. ...+
T Consensus 278 l~~~gl~~~~~G-i~vd~~~~t-~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~----~~-~~~~ 341 (466)
T 3l8k_A 278 AREIGLSISKTG-IVVDETMKT-NIPNVFATGDANGL---------APYYHAAVRMSIAAANNIMANGM----PV-DYVD 341 (466)
T ss_dssp TGGGTCCBCSSS-BCCCTTCBC-SSTTEEECGGGTCS---------CCSHHHHHHHHHHHHHHHHTTTS----CC-CCCC
T ss_pred hhhcCceeCCCC-EeECCCccC-CCCCEEEEEecCCC---------CccHhHHHHHHHHHHHHHhCCCC----Cc-cccC
Confidence 678899999999 999999999 99999999999952 78899999999999999863200 00 0011
Q ss_pred CCCCCCceecccceEEEecCC
Q 010845 419 MELGDPFVYRHLGSMATIGRY 439 (499)
Q Consensus 419 ~~~~~~~~~~~~g~~~~lG~~ 439 (499)
.. ..|+..-...+++++|..
T Consensus 342 ~~-~~p~~~~~~~~~a~vG~t 361 (466)
T 3l8k_A 342 VK-SIPVTIYTIPSLSYVGIL 361 (466)
T ss_dssp ST-TSCEEECSSSCEEEEECC
T ss_pred CC-CCcEEEECCCCeEEecCC
Confidence 12 256665555677787754
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=299.00 Aligned_cols=280 Identities=16% Similarity=0.171 Sum_probs=210.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc-hhhhhc-cCCCCCccccchhhhccccccCCCeEEEEEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL-LASTCV-GTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~-~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
++|+|||||+||+++|..|++.|++|+|||+++.....+. ...+.. ......++...+.+ .+....++.++.++|
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~v 79 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARR---QIERYPTIHWVEGRV 79 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHH---HHTTCTTEEEEESCE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHH---HHHhcCCeEEEEeEE
Confidence 6899999999999999999999999999998764322211 111111 01111122222222 234445788888999
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHHHhhc
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
+.++.+.+.+.+...+ + .++.||+||+|||+.|..|.+||.+.. ........+.
T Consensus 80 ~~i~~~~~~~~v~~~~-g--------~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------- 136 (297)
T 3fbs_A 80 TDAKGSFGEFIVEIDG-G--------RRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHG-------------- 136 (297)
T ss_dssp EEEEEETTEEEEEETT-S--------CEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHT--------------
T ss_pred EEEEEcCCeEEEEECC-C--------CEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcc--------------
Confidence 9999887665554411 1 379999999999999999999998542 1111111110
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhC
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 297 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~ 297 (499)
...+.++|+|||+|++|+|+|..|.+. .+|+++++... .+ .+.+.+.|++.
T Consensus 137 --------~~~~~~~v~vvG~G~~~~e~a~~l~~~---------------g~v~~v~~~~~--~~----~~~~~~~l~~~ 187 (297)
T 3fbs_A 137 --------YELDQGKIGVIAASPMAIHHALMLPDW---------------GETTFFTNGIV--EP----DADQHALLAAR 187 (297)
T ss_dssp --------GGGTTCEEEEECCSTTHHHHHHHGGGT---------------SEEEEECTTTC--CC----CHHHHHHHHHT
T ss_pred --------hhhcCCEEEEEecCccHHHHHHHhhhc---------------CcEEEEECCCC--CC----CHHHHHHHHHC
Confidence 012246999999999999999988753 28999988632 22 34566788899
Q ss_pred CCEEEeCceEEEeCC-eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCC--CCC-ceeeCCCCCCCCCCCeEEeccc
Q 010845 298 GVRLVRGIVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS--PGG-RIGIDEWLRVPSVQDVFAVGDC 372 (499)
Q Consensus 298 gV~v~~~~v~~v~~~-~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~--~~G-~i~vd~~l~~~~~~~Ifa~GD~ 372 (499)
||+++..+|.+++.+ .+++++|+++++|.||+|+|++|+ ++++.++++.+ ++| ++.||+++++ ++|||||+|||
T Consensus 188 gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~ 266 (297)
T 3fbs_A 188 GVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDV 266 (297)
T ss_dssp TCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGG
T ss_pred CcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeec
Confidence 999996689999887 899999999999999999999998 67888888776 457 8999999998 99999999999
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 373 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 373 a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.. |+++..|+.||+.+|.+|.+.+.
T Consensus 267 ~~~---------~~~~~~A~~~g~~aa~~i~~~l~ 292 (297)
T 3fbs_A 267 ARP---------AGSVALAVGDGAMAGAAAHRSIL 292 (297)
T ss_dssp GCT---------TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc---------hHHHHHHHHhHHHHHHHHHHHHh
Confidence 952 78899999999999999999886
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=317.92 Aligned_cols=313 Identities=20% Similarity=0.245 Sum_probs=224.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----------hh-----------hh-hccCCCCCccccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----------LA-----------ST-CVGTLEFRSVAEP 119 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----------~~-----------~~-~~g~~~~~~~~~~ 119 (499)
+++|+|||||+||+++|..|++.|++|+|||+++.+..... +. .. ..|. .......+
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 84 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGI-EMSEVRLN 84 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTE-EESCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCcc-ccCCCccC
Confidence 47899999999999999999999999999999876532210 00 00 0010 00000011
Q ss_pred hhhh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 120 IARI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 120 ~~~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+..+ ........++.++.+++..+|. +.+.+...+++ ..++.||+||+|||+.|..|
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~~~gg-------~~~~~~d~lViAtGs~p~~p 155 (474)
T 1zmd_A 85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGK--NQVTATKADGG-------TQVIDTKNILIATGSEVTPF 155 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEET--TEEEEECTTSC-------EEEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecC--CEEEEEecCCC-------cEEEEeCEEEECCCCCCCCC
Confidence 1110 0111223578888888877765 44555431101 24799999999999999999
Q ss_pred CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 186 ~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
++||.+... +.+..++. ..... .++++|||||++|+|+|..|.+++
T Consensus 156 ~i~g~~~~~--v~t~~~~~----------~~~~~----------~~~vvViGgG~~g~E~A~~l~~~g------------ 201 (474)
T 1zmd_A 156 PGITIDEDT--IVSSTGAL----------SLKKV----------PEKMVVIGAGVIGVELGSVWQRLG------------ 201 (474)
T ss_dssp TTCCCCSSS--EECHHHHT----------TCSSC----------CSEEEEECCSHHHHHHHHHHHHTT------------
T ss_pred CCCCCCcCc--EEcHHHHh----------hcccc----------CceEEEECCCHHHHHHHHHHHHcC------------
Confidence 999975421 22332221 11112 259999999999999999999887
Q ss_pred CceEEEEEeCC-CcCC-CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e-EEE-------CCCcEEeeeEEEEcCC
Q 010845 266 DYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K-LIL-------NDGTEVPYGLLVWSTG 332 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~-v~~-------~~g~~i~~D~vi~a~G 332 (499)
.+|+++++. ++++ .+++++.+.+.+.+++.||+++++ +|.+++.+ + +.+ .+++++++|.||+|+|
T Consensus 202 --~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G 279 (474)
T 1zmd_A 202 --ADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIG 279 (474)
T ss_dssp --CEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSC
T ss_pred --CEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcC
Confidence 899999987 7888 899999999999999999999999 89998743 2 443 3567899999999999
Q ss_pred CCcch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Q 010845 333 VGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAG 409 (499)
Q Consensus 333 ~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~ 409 (499)
.+|+. + +++++++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+++|.||...
T Consensus 280 ~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~---- 345 (474)
T 1zmd_A 280 RRPFTKNLGLEELGIELDPRGRIPVNTRFQT-KIPNIYAIGDVVAG---------PMLAHKAEDEGIICVEGMAGG---- 345 (474)
T ss_dssp EEECCTTSSHHHHTCCCCTTSCCCCCTTCBC-SSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHTTC----
T ss_pred CCcCCCcCCchhcCCccCCCCCEEECcCCcc-CCCCEEEeeecCCC---------CccHHHHHHHHHHHHHHhcCC----
Confidence 99994 4 5677898888899999999998 99999999999952 678899999999999998631
Q ss_pred CCCCCCcCcCCCCCCceecccceEEEecCC
Q 010845 410 GGRANSAKDMELGDPFVYRHLGSMATIGRY 439 (499)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~ 439 (499)
... -+... .|+......+++++|..
T Consensus 346 -~~~---~~~~~-~p~~~~~~~~~a~vG~~ 370 (474)
T 1zmd_A 346 -AVH---IDYNC-VPSVIYTHPEVAWVGKS 370 (474)
T ss_dssp -CCC---CCGGG-CCEEECSSSEEEEEECC
T ss_pred -CCc---CCCCC-CCEEEECCCCeEEEeCC
Confidence 010 01111 44444344577777754
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=314.72 Aligned_cols=288 Identities=18% Similarity=0.247 Sum_probs=210.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC--------Ccccccc----hhh-----------h-----hccCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPL----LAS-----------T-----CVGTLE 112 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~--------~~~~~~~----~~~-----------~-----~~g~~~ 112 (499)
.+++|+|||||+||+++|..|++.|++|+|||+++ .+..... .+. . ..|...
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~ 110 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV 110 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence 45799999999999999999999999999999864 2211100 000 0 001110
Q ss_pred -------CCccccchhhh-------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 113 -------FRSVAEPIARI-------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 113 -------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
...+....+.+ ........++.++.+++..++... +.+...+ + +..++.||+|||||
T Consensus 111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~--v~v~~~~-g------~~~~i~~d~lViAT 181 (519)
T 3qfa_A 111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHR--IKATNNK-G------KEKIYSAERFLIAT 181 (519)
T ss_dssp CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTE--EEEECTT-C------CCCEEEEEEEEECC
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCE--EEEEcCC-C------CEEEEECCEEEEEC
Confidence 00011111110 001122367899999999888654 4443311 1 12479999999999
Q ss_pred CCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHH
Q 010845 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (499)
Q Consensus 179 G~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~ 258 (499)
|+.|..|++||.+++.+ +..+. +.....| ++++|||||++|+|+|..+++++
T Consensus 182 Gs~p~~p~i~G~~~~~~---t~~~~----------~~l~~~~----------~~vvVIGgG~ig~E~A~~l~~~G----- 233 (519)
T 3qfa_A 182 GERPRYLGIPGDKEYCI---SSDDL----------FSLPYCP----------GKTLVVGASYVALECAGFLAGIG----- 233 (519)
T ss_dssp CEEECCCCCTTHHHHCB---CHHHH----------TTCSSCC----------CSEEEECCSHHHHHHHHHHHHTT-----
T ss_pred CCCcCCCCCCCccCceE---cHHHH----------hhhhhcC----------CeEEEECCcHHHHHHHHHHHHcC-----
Confidence 99999999999754332 22221 2222333 48999999999999999999887
Q ss_pred HhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe---C---CeEEE----CCC-c--EEee
Q 010845 259 QRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD---S---QKLIL----NDG-T--EVPY 324 (499)
Q Consensus 259 ~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~---~---~~v~~----~~g-~--~i~~ 324 (499)
.+|+++++.++++.+++++.+.+.+.|++.||+++++ .+.+++ + +.+.+ .+| + ++++
T Consensus 234 ---------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~ 304 (519)
T 3qfa_A 234 ---------LDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEY 304 (519)
T ss_dssp ---------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEE
T ss_pred ---------CeEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEEC
Confidence 8999999988899999999999999999999999998 655553 2 22322 355 2 5789
Q ss_pred eEEEEcCCCCcch-h--cccCCCCCC-CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHH
Q 010845 325 GLLVWSTGVGPST-L--VKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 400 (499)
Q Consensus 325 D~vi~a~G~~p~~-~--~~~~~l~~~-~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~ 400 (499)
|.||+|+|++|+. + ++.++++++ ++|+|.||+++|| +.|||||+|||+. + .+++++.|..||+++|+
T Consensus 305 D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~T-s~~~IyA~GD~~~-----g---~~~~~~~A~~~g~~aa~ 375 (519)
T 3qfa_A 305 NTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT-NVPYIYAIGDILE-----D---KVELTPVAIQAGRLLAQ 375 (519)
T ss_dssp SEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBC-SSTTEEECGGGBS-----S---SCCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCcc-CCCCEEEEEeccC-----C---CCccHHHHHHHHHHHHH
Confidence 9999999999984 3 667788888 6899999999999 9999999999993 2 27889999999999999
Q ss_pred HHH
Q 010845 401 LLN 403 (499)
Q Consensus 401 ~i~ 403 (499)
||.
T Consensus 376 ~i~ 378 (519)
T 3qfa_A 376 RLY 378 (519)
T ss_dssp HHH
T ss_pred HHc
Confidence 986
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=314.69 Aligned_cols=286 Identities=19% Similarity=0.243 Sum_probs=213.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hh-----------hhhc--cCCCCC--------c
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LA-----------STCV--GTLEFR--------S 115 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~-----------~~~~--g~~~~~--------~ 115 (499)
.+++|+|||||+||+++|..|++.|++|+|||++. +..... .+ .... ...... .
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH 88 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence 35799999999999999999999999999999974 211100 00 0000 000000 0
Q ss_pred cccchhhh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCC
Q 010845 116 VAEPIARI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (499)
Q Consensus 116 ~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~ 181 (499)
...++..+ ........++.++.+++..++... +.+... ++ +..++.||+||+|||+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~--~~v~~~-~g------~~~~~~~d~lviAtGs~ 159 (479)
T 2hqm_A 89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGN--VEVQKR-DN------TTEVYSANHILVATGGK 159 (479)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSC--EEEEES-SS------CCEEEEEEEEEECCCEE
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCE--EEEEeC-CC------cEEEEEeCEEEEcCCCC
Confidence 00111110 011112367899999888876544 444321 11 12378999999999999
Q ss_pred ccCC-CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHh
Q 010845 182 ASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (499)
Q Consensus 182 ~~~~-~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~ 260 (499)
|..| ++||.+ ..+ +..+.. ..... .++++|||||++|+|+|..|.+++
T Consensus 160 p~~p~~i~g~~-~~~---~~~~~~----------~l~~~----------~~~vvViGgG~ig~E~A~~l~~~g------- 208 (479)
T 2hqm_A 160 AIFPENIPGFE-LGT---DSDGFF----------RLEEQ----------PKKVVVVGAGYIGIELAGVFHGLG------- 208 (479)
T ss_dssp ECCCTTSTTGG-GSB---CHHHHH----------HCSSC----------CSEEEEECSSHHHHHHHHHHHHTT-------
T ss_pred CCCCCCCCCcc-ccc---chHHHh----------ccccc----------CCeEEEECCCHHHHHHHHHHHHcC-------
Confidence 9999 899973 222 222221 11222 359999999999999999999887
Q ss_pred cCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC------eEEECCC-cEEeeeEEEEcC
Q 010845 261 YSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ------KLILNDG-TEVPYGLLVWST 331 (499)
Q Consensus 261 ~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~------~v~~~~g-~~i~~D~vi~a~ 331 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .|.+++| +++++|.||+|+
T Consensus 209 -------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~ 281 (479)
T 2hqm_A 209 -------SETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTI 281 (479)
T ss_dssp -------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECS
T ss_pred -------CceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECC
Confidence 899999997 7889999999999999999999999999 89998642 4777888 799999999999
Q ss_pred CCCcch-h-cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 332 GVGPST-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 332 G~~p~~-~-~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|++|+. + ++.++++++++|+|.||+++|| +.|+|||+|||+. . +.+++.|.+||+.+|+||..
T Consensus 282 G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~------~---~~~~~~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 282 GRKSHLGMGSENVGIKLNSHDQIIADEYQNT-NVPNIYSLGDVVG------K---VELTPVAIAAGRKLSNRLFG 346 (479)
T ss_dssp CEEECCCSSGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGTT------S---SCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCccccChhhcCceECCCCCEeECCCCcc-CCCCEEEEEecCC------C---cccHHHHHHHHHHHHHHhcC
Confidence 999995 5 6778999999999999999998 9999999999984 2 67899999999999999863
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=313.09 Aligned_cols=286 Identities=21% Similarity=0.305 Sum_probs=214.0
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCeEEEEcC--------CCCcccccch----hh-----------h---h--ccC--
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSP--------RNHMVFTPLL----AS-----------T---C--VGT-- 110 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~--------~~~~~~~~~~----~~-----------~---~--~g~-- 110 (499)
+++|+|||||+||+++|.+|++ .|++|+|||+ ++.+..+... +. . . .|.
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 82 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL 82 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence 4799999999999999999999 9999999992 3333221100 00 0 0 000
Q ss_pred ------CCCCccccchh-------hhccccccCC-CeEEEEEEEEEEECCCCEEEEeee--cCccccCCCc-eeeeeCCe
Q 010845 111 ------LEFRSVAEPIA-------RIQPAISREP-GSYFFLSHCAGIDTDNHVVHCETV--TDELRTLEPW-KFKISYDK 173 (499)
Q Consensus 111 ------~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~v~~id~~~~~v~~~~~--~~~~~~~~~~-~~~i~yd~ 173 (499)
.+...+....+ .......... +++++.++++.++. +.+.+... .++ + ...+.||+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~g------~~~~~~~~d~ 154 (490)
T 1fec_A 83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDN--HTVLVRESADPNS------AVLETLDTEY 154 (490)
T ss_dssp CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEET--TEEEEESSSSTTS------CEEEEEEEEE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeC--CEEEEEeeccCCC------CceEEEEcCE
Confidence 00000000000 0001111234 89999999988875 46666421 011 0 14799999
Q ss_pred EEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHH-
Q 010845 174 LVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF- 252 (499)
Q Consensus 174 LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~- 252 (499)
||||||+.|..|++||. ++. .+..+.. ..... .++++|||||++|+|+|..+.++
T Consensus 155 lviAtGs~p~~p~i~g~-~~~---~~~~~~~----------~~~~~----------~~~vvViGgG~ig~E~A~~l~~~~ 210 (490)
T 1fec_A 155 ILLATGSWPQHLGIEGD-DLC---ITSNEAF----------YLDEA----------PKRALCVGGGYISIEFAGIFNAYK 210 (490)
T ss_dssp EEECCCEEECCCCSBTG-GGC---BCHHHHT----------TCSSC----------CSEEEEECSSHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCCCCCCc-cce---ecHHHHh----------hhhhc----------CCeEEEECCCHHHHHHHHHHHhhc
Confidence 99999999999999987 332 2332221 11222 35999999999999999999887
Q ss_pred --HHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEe
Q 010845 253 --IMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVP 323 (499)
Q Consensus 253 --~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~ 323 (499)
+ .+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .|.+++|++++
T Consensus 211 ~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~ 276 (490)
T 1fec_A 211 ARG--------------GQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEAD 276 (490)
T ss_dssp CTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEE
T ss_pred cCc--------------CeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEE
Confidence 6 899999997 7899999999999999999999999999 89998643 46778888999
Q ss_pred eeEEEEcCCCCcch--h-cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHH
Q 010845 324 YGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 400 (499)
Q Consensus 324 ~D~vi~a~G~~p~~--~-~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~ 400 (499)
+|.||+|+|.+|+. + ++.++++++++|+|.||+++|| +.|+|||+|||+. . +++++.|.+||+.+|.
T Consensus 277 ~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t-~~~~IyA~GD~~~------~---~~l~~~A~~~g~~aa~ 346 (490)
T 1fec_A 277 YDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTD------R---VMLTPVAINEGAAFVD 346 (490)
T ss_dssp ESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGC------S---CCCHHHHHHHHHHHHH
T ss_pred cCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCcc-CCCCEEEEeccCC------C---ccCHHHHHHHHHHHHH
Confidence 99999999999994 4 6788999998999999999999 9999999999994 1 6789999999999999
Q ss_pred HHH
Q 010845 401 LLN 403 (499)
Q Consensus 401 ~i~ 403 (499)
||.
T Consensus 347 ~i~ 349 (490)
T 1fec_A 347 TVF 349 (490)
T ss_dssp HHH
T ss_pred Hhc
Confidence 986
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=311.91 Aligned_cols=280 Identities=20% Similarity=0.292 Sum_probs=212.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hh-----------hhhc------cC------CCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LA-----------STCV------GT------LEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~-----------~~~~------g~------~~~~ 114 (499)
++||+|||||+||+++|..|++.|++|+|||++. +..... .+ .... +. .+..
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE 82 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 4799999999999999999999999999999974 221100 00 0000 00 0000
Q ss_pred ccccchhhh-------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 115 SVAEPIARI-------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 115 ~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+....... ........+++++.++++.++. +.|.+ + + .++.||+||||||+.|..|++
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~-~---g--------~~~~~d~lviAtGs~p~~p~i 148 (450)
T 1ges_A 83 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV-N---G--------ETITADHILIATGGRPSHPDI 148 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE-T---T--------EEEEEEEEEECCCEEECCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE-C---C--------EEEEeCEEEECCCCCCCCCCC
Confidence 000000000 0001123578888888887875 56665 2 2 379999999999999999999
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+ +. .+..+... .... .++++|||||++|+|+|..|++++
T Consensus 149 ~g~~-~~---~~~~~~~~----------~~~~----------~~~vvViGgG~~g~e~A~~l~~~g-------------- 190 (450)
T 1ges_A 149 PGVE-YG---IDSDGFFA----------LPAL----------PERVAVVGAGYIGVELGGVINGLG-------------- 190 (450)
T ss_dssp TTGG-GS---BCHHHHHH----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCcc-ce---ecHHHhhh----------hhhc----------CCeEEEECCCHHHHHHHHHHHhcC--------------
Confidence 9973 32 23333221 1122 359999999999999999999887
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCcch--h
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPST--L 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~--~ 338 (499)
.+|+++++. ++++.+++++.+.+.+.+++.||+++++ +|.+++.+ .+++++|+++++|.||+|+|.+|+. +
T Consensus 191 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l 270 (450)
T 1ges_A 191 AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNI 270 (450)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTS
T ss_pred CEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCC
Confidence 899999987 6889999999999999999999999999 89998742 4778889999999999999999994 3
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
++.++++++++|+|.||+++|| +.|||||+|||+. . +++++.|.+||+.+|.||..
T Consensus 271 ~~~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~------~---~~~~~~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 271 NLEAAGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTG------A---VELTPVAVAAGRRLSERLFN 327 (450)
T ss_dssp CHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECSGGGT------S---CCCHHHHHHHHHHHHHHHHT
T ss_pred CchhcCceECCCCCEeECCCCcc-CCCCEEEEeccCC------C---CccHHHHHHHHHHHHHHHcC
Confidence 5677899998999999999998 9999999999984 1 67889999999999999863
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=309.10 Aligned_cols=279 Identities=21% Similarity=0.318 Sum_probs=211.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh-----------hh-----ccCC------CCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------TC-----VGTL------EFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~-----------~~-----~g~~------~~~~ 115 (499)
+++|+|||||+||+++|..|++.|++|+|||++. +..... .+. .. .+.. +...
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPR 82 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHH
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence 5799999999999999999999999999999974 221100 000 00 0110 0000
Q ss_pred cccchhhh-------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC
Q 010845 116 VAEPIARI-------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (499)
Q Consensus 116 ~~~~~~~~-------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip 188 (499)
+....+.+ ........++.++.+++..++. +.|.+ + + .++.||+||||||+.|..|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~-~---g--------~~~~~d~lviAtGs~p~~p~i~ 148 (463)
T 2r9z_A 83 LVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA--HTIEV-E---G--------QRLSADHIVIATGGRPIVPRLP 148 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEE-T---T--------EEEEEEEEEECCCEEECCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC--CEEEE-C---C--------EEEEcCEEEECCCCCCCCCCCC
Confidence 00000000 0111123578888888877764 56666 2 2 3799999999999999999999
Q ss_pred CccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010845 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 189 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
|. +.. .+..+... .... .++++|||||++|+|+|..|.+++ .
T Consensus 149 G~-~~~---~~~~~~~~----------~~~~----------~~~vvVvGgG~~g~e~A~~l~~~G--------------~ 190 (463)
T 2r9z_A 149 GA-ELG---ITSDGFFA----------LQQQ----------PKRVAIIGAGYIGIELAGLLRSFG--------------S 190 (463)
T ss_dssp TG-GGS---BCHHHHHH----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------C
T ss_pred Cc-cce---ecHHHHhh----------hhcc----------CCEEEEECCCHHHHHHHHHHHhcC--------------C
Confidence 97 332 23332221 1122 259999999999999999999887 8
Q ss_pred EEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCc-EEeeeEEEEcCCCCcch--h-
Q 010845 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGT-EVPYGLLVWSTGVGPST--L- 338 (499)
Q Consensus 269 ~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~-~i~~D~vi~a~G~~p~~--~- 338 (499)
+|+++++. ++++.+++++.+.+.+.+++.||+++++ +|.+++.+ .+.+++|+ ++++|.||+|+|.+|+. +
T Consensus 191 ~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~ 270 (463)
T 2r9z_A 191 EVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLG 270 (463)
T ss_dssp EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSC
T ss_pred EEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCC
Confidence 99999987 7889999999999999999999999999 89998642 57778998 89999999999999994 3
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++.++++++++|+|.||+++|| +.|||||+|||+. . +.+++.|.+||+.+|.||.
T Consensus 271 ~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~------~---~~~~~~A~~~g~~aa~~i~ 325 (463)
T 2r9z_A 271 LEAAGIEVQSNGMVPTDAYQNT-NVPGVYALGDITG------R---DQLTPVAIAAGRRLAERLF 325 (463)
T ss_dssp HHHHTCCCCTTSCCCCCTTSBC-SSTTEEECGGGGT------S---CCCHHHHHHHHHHHHHHHH
T ss_pred chhcCCccCCCCCEeECCCCcc-CCCCEEEEeecCC------C---cccHHHHHHHHHHHHHHHc
Confidence 4677898888999999999998 9999999999984 1 6788999999999999986
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=308.48 Aligned_cols=287 Identities=20% Similarity=0.248 Sum_probs=211.2
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC-------C--cccccch----hh---------------h-hccC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-------H--MVFTPLL----AS---------------T-CVGT 110 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~-------~--~~~~~~~----~~---------------~-~~g~ 110 (499)
..+++|+|||||+||+++|..|++.|++|+|||+.. . +...... +. . ..|.
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 86 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW 86 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 345899999999999999999999999999999421 1 1111000 00 0 0011
Q ss_pred CCCC-------ccccchhhhc-------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEE
Q 010845 111 LEFR-------SVAEPIARIQ-------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (499)
Q Consensus 111 ~~~~-------~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LVi 176 (499)
.... .+......+. .......++.++.+++..++.. .+.+... ++ ...+.||+|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~--~v~v~~~-~g-------~~~~~~d~lvi 156 (483)
T 3dgh_A 87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSH--TLLAKLK-SG-------ERTITAQTFVI 156 (483)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETT--EEEEECT-TC-------CEEEEEEEEEE
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCC--EEEEEeC-CC-------eEEEEcCEEEE
Confidence 1000 0101111110 0112235788888888888754 4444331 11 14799999999
Q ss_pred cCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHH
Q 010845 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (499)
Q Consensus 177 AtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~ 256 (499)
|||+.|..|++||.++..+ +..+. +.....| ++++|||+|++|+|+|..+.+++
T Consensus 157 ATGs~p~~p~i~G~~~~~~---~~~~~----------~~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g--- 210 (483)
T 3dgh_A 157 AVGGRPRYPDIPGAVEYGI---TSDDL----------FSLDREP----------GKTLVVGAGYIGLECAGFLKGLG--- 210 (483)
T ss_dssp CCCEEECCCSSTTHHHHCB---CHHHH----------TTCSSCC----------CEEEEECCSHHHHHHHHHHHHTT---
T ss_pred eCCCCcCCCCCCCcccccC---cHHHH----------hhhhhcC----------CcEEEECCCHHHHHHHHHHHHcC---
Confidence 9999999999999854432 22221 1222223 48999999999999999999887
Q ss_pred HHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCc-----EEeee
Q 010845 257 VRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGT-----EVPYG 325 (499)
Q Consensus 257 ~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~-----~i~~D 325 (499)
.+|+++++.++++.+++++.+.+.+.|++.||+++++ .|.+++. + .|++.+++ ++++|
T Consensus 211 -----------~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D 279 (483)
T 3dgh_A 211 -----------YEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYD 279 (483)
T ss_dssp -----------CEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEES
T ss_pred -----------CEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcC
Confidence 8999999988899999999999999999999999999 8888864 2 26666553 79999
Q ss_pred EEEEcCCCCcch-hc--ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 010845 326 LLVWSTGVGPST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402 (499)
Q Consensus 326 ~vi~a~G~~p~~-~~--~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i 402 (499)
.||+|+|++|+. ++ +..++++++ |+|.||+++|| +.|||||+|||+. + .|.+++.|..||+.+|+||
T Consensus 280 ~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t-~~~~IyA~GD~~~-----~---~~~~~~~A~~~g~~aa~~i 349 (483)
T 3dgh_A 280 TVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEAT-NVANIYAVGDIIY-----G---KPELTPVAVLAGRLLARRL 349 (483)
T ss_dssp EEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBC-SSTTEEECSTTBT-----T---SCCCHHHHHHHHHHHHHHH
T ss_pred EEEECcccccCcCcCCchhcCccccC-CEEEECcCCcc-CCCCEEEEEcccC-----C---CCccHHHHHHHHHHHHHHH
Confidence 999999999994 44 777899888 99999999998 9999999999984 2 2778999999999999998
Q ss_pred H
Q 010845 403 N 403 (499)
Q Consensus 403 ~ 403 (499)
.
T Consensus 350 ~ 350 (483)
T 3dgh_A 350 Y 350 (483)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=313.00 Aligned_cols=298 Identities=18% Similarity=0.220 Sum_probs=204.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----chhh-----------hh-----ccCC-----CCCcc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS-----------TC-----VGTL-----EFRSV 116 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----~~~~-----------~~-----~g~~-----~~~~~ 116 (499)
+++|+|||||+||+++|..|++.|++|+|||+++. .... ..+. .. .|.. +...+
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~-GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL-GGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL 80 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSST-THHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCc-CccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHH
Confidence 36899999999999999999999999999999852 1110 0000 00 0110 00000
Q ss_pred c-------cchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecC--ccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 117 A-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTD--ELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 117 ~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~--~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
. ..+...........++.++.+++..++. +.+.+.+... +.....+...++.||+||||||+.|..|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i 158 (500)
T 1onf_A 81 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPV 158 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCC
Confidence 0 0011001111123578888877766654 4555532000 000000012478999999999999999999
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+ +.+ +..++. .... .++++|||||++|+|+|..|++++
T Consensus 159 ~G~~-~~~---~~~~~~----------~~~~-----------~~~vvViGgG~ig~E~A~~l~~~g-------------- 199 (500)
T 1onf_A 159 KGIE-NTI---SSDEFF----------NIKE-----------SKKIGIVGSGYIAVELINVIKRLG-------------- 199 (500)
T ss_dssp TTGG-GCE---EHHHHT----------TCCC-----------CSEEEEECCSHHHHHHHHHHHTTT--------------
T ss_pred CCCC-ccc---CHHHHh----------ccCC-----------CCeEEEECChHHHHHHHHHHHHcC--------------
Confidence 9973 322 222211 1111 359999999999999999999877
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcE-EeeeEEEEcCCCCcch--
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTE-VPYGLLVWSTGVGPST-- 337 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~-i~~D~vi~a~G~~p~~-- 337 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .+.+++|++ +++|.||+|+|.+|+.
T Consensus 200 ~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~ 279 (500)
T 1onf_A 200 IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTEN 279 (500)
T ss_dssp CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTT
T ss_pred CeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCC
Confidence 899999996 7889999999999999999999999999 89998742 467788888 9999999999999995
Q ss_pred h-cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccC------------------------CC-CCCCCchHHHH
Q 010845 338 L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES------------------------TG-KTVLPALAQVA 391 (499)
Q Consensus 338 ~-~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~------------------------~g-~~~~p~~~~~A 391 (499)
+ ++.+++++ ++|+|.||+++|| +.|+|||+|||+.+++. .+ ....+++++.|
T Consensus 280 l~~~~~g~~~-~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 357 (500)
T 1onf_A 280 LKLEKLNVET-NNNYIVVDENQRT-SVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVA 357 (500)
T ss_dssp SSCTTTTCCB-SSSCEEECTTCBC-SSSSEEECSTTEEEC------------------------------CBCCCCHHHH
T ss_pred CCchhcCccc-cCCEEEECCCccc-CCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHH
Confidence 4 57788888 7899999999998 99999999999954210 00 00247889999
Q ss_pred HHHHHHHHHHHH
Q 010845 392 ERQGKYLFSLLN 403 (499)
Q Consensus 392 ~~~g~~aa~~i~ 403 (499)
.+||+++|+||.
T Consensus 358 ~~~g~~aa~~i~ 369 (500)
T 1onf_A 358 INAGRLLADRLF 369 (500)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=315.15 Aligned_cols=288 Identities=21% Similarity=0.257 Sum_probs=212.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----hh----------------h-hccCCCCCccccch
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS----------------T-CVGTLEFRSVAEPI 120 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~----------------~-~~g~~~~~~~~~~~ 120 (499)
+++|+|||||+||+++|..|++.|++|+|||+++.+...... +. . ..|.........++
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS 81 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 468999999999999999999999999999998765332110 00 0 00100000000011
Q ss_pred hhh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 121 ARI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 121 ~~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
..+ ...+....++.++.+++..++.. .+.+...+ + +..++.||+||+|||+.|..|+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~--~~~v~~~~-G------~~~~~~~d~lviAtG~~p~~p~ 152 (468)
T 2qae_A 82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAH--SIRVNGLD-G------KQEMLETKKTIIATGSEPTELP 152 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETT--EEEEEETT-S------CEEEEEEEEEEECCCEEECCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCC--EEEEEecC-C------ceEEEEcCEEEECCCCCcCCCC
Confidence 110 01112225788888888778754 44444311 1 1247999999999999999888
Q ss_pred CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010845 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 187 ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
++|.+.. .+.+..++.. .... .++++|||||++|+|+|..+.+.+
T Consensus 153 ~~g~~~~--~v~t~~~~~~----------~~~~----------~~~vvViGgG~~g~E~A~~l~~~g------------- 197 (468)
T 2qae_A 153 FLPFDEK--VVLSSTGALA----------LPRV----------PKTMVVIGGGVIGLELGSVWARLG------------- 197 (468)
T ss_dssp TBCCCSS--SEECHHHHHT----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT-------------
T ss_pred CCCCCcC--ceechHHHhh----------cccC----------CceEEEECCCHHHHHHHHHHHHhC-------------
Confidence 8887531 1223333321 1112 359999999999999999999887
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHH-HhCCCEEEeC-ceEEEeCC----eEEEC--CC--cEEeeeEEEEcCCCCc
Q 010845 267 YIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-IVKDVDSQ----KLILN--DG--TEVPYGLLVWSTGVGP 335 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l-~~~gV~v~~~-~v~~v~~~----~v~~~--~g--~~i~~D~vi~a~G~~p 335 (499)
.+|+++++. ++++.+++++.+.+.+.+ ++.||+++++ +|.+++.+ .+.++ +| +++++|.||+|+|.+|
T Consensus 198 -~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p 276 (468)
T 2qae_A 198 -AEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRP 276 (468)
T ss_dssp -CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEE
T ss_pred -CEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCccc
Confidence 899999987 788999999999999999 9999999999 89998753 24454 66 6899999999999999
Q ss_pred ch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 336 ST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 336 ~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+. + ++.++++++++|+|.||+++|| +.|||||+|||+.. .+++++.|.+||+.+|.||.
T Consensus 277 ~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~--------~~~~~~~A~~~g~~aa~~i~ 338 (468)
T 2qae_A 277 FTGGLGLDKINVAKNERGFVKIGDHFET-SIPDVYAIGDVVDK--------GPMLAHKAEDEGVACAEILA 338 (468)
T ss_dssp CCTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGBSS--------SCSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCchhcCCccCCCCCEeECCCccc-CCCCEEEeeccCCC--------CCccHhHHHHHHHHHHHHHc
Confidence 94 4 5778898888899999999998 99999999999951 26789999999999999986
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=305.05 Aligned_cols=285 Identities=18% Similarity=0.207 Sum_probs=210.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh---------------hhhc------cCC------CC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---------------STCV------GTL------EF 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~---------------~~~~------g~~------~~ 113 (499)
.+++|+|||||+||+++|..|++.|++|+|||++. +....... .... |.. +.
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 81 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC-CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence 35799999999999999999999999999999983 22110000 0000 110 00
Q ss_pred Ccccc-------chh--hhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 114 RSVAE-------PIA--RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 114 ~~~~~-------~~~--~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..+.. .++ .+...+....+++++.+++..++.. .+.+...+ + +...+.||+||||||+.|..
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~~~-g------~~~~~~~d~lviAtGs~p~~ 152 (467)
T 1zk7_A 82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQ--SLTVRLNE-G------GERVVMFDRCLVATGASPAV 152 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETT--EEEEEETT-S------SEEEEECSEEEECCCEEECC
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCC--EEEEEeCC-C------ceEEEEeCEEEEeCCCCCCC
Confidence 00000 011 0111122222899999999888865 44443211 1 12479999999999999999
Q ss_pred CCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010845 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (499)
Q Consensus 185 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~ 264 (499)
|++||.+... +.+..+... .... .++++|||||++|+|+|..+.+.+
T Consensus 153 p~i~G~~~~~--~~~~~~~~~----------~~~~----------~~~vvViGgG~~g~E~A~~l~~~g----------- 199 (467)
T 1zk7_A 153 PPIPGLKESP--YWTSTEALA----------SDTI----------PERLAVIGSSVVALELAQAFARLG----------- 199 (467)
T ss_dssp CCCTTTTTSC--CBCHHHHHH----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT-----------
T ss_pred CCCCCCCcCc--eecHHHHhc----------cccc----------CCEEEEECCCHHHHHHHHHHHHcC-----------
Confidence 9999985421 223333221 1122 359999999999999999999887
Q ss_pred CCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch-
Q 010845 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 265 ~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~- 337 (499)
.+|+++++. .+++ +++++.+.+.+.+++.||+++++ +|.+++.+ .+.++ +.++++|.||+|+|.+|+.
T Consensus 200 ---~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 200 ---SKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTR 274 (467)
T ss_dssp ---CEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCT
T ss_pred ---CEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCC
Confidence 899999987 6888 99999999999999999999998 89888642 24454 5689999999999999994
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+ ++..+++++++|+|.||+++|+ +.|+|||+|||+.. |..++.|.+||+.+|.||.
T Consensus 275 ~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~ 332 (467)
T 1zk7_A 275 SLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTDQ---------PQFVYVAAAAGTRAAINMT 332 (467)
T ss_dssp TSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSTTBSS---------CCCHHHHHHHHHHHHHHHT
T ss_pred cCCchhcCCcCCCCCCEEECCCccc-CCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHHc
Confidence 2 5677898888899999999999 99999999999952 5678999999999999985
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=309.60 Aligned_cols=289 Identities=19% Similarity=0.287 Sum_probs=211.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC--------Ccccccch----hh---------------h-hccCC-
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLL----AS---------------T-CVGTL- 111 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~--------~~~~~~~~----~~---------------~-~~g~~- 111 (499)
.++||+|||||+||+++|..|++.|++|+|||+++ .+....+. +. . ..|..
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~ 84 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV 84 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence 34799999999999999999999999999999732 22211000 00 0 00110
Q ss_pred ------CCCccccchhhh-------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 112 ------EFRSVAEPIARI-------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 112 ------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
+...+....+.+ ........++.++.+++..++.. .+.+...+ ++..++.||+|||||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~--~v~v~~~~-------g~~~~~~~d~lViAT 155 (488)
T 3dgz_A 85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEH--TVRGVDKG-------GKATLLSAEHIVIAT 155 (488)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSS--EEEEECTT-------SCEEEEEEEEEEECC
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--eEEEEeCC-------CceEEEECCEEEEcC
Confidence 100111111110 01112235788988888877654 45544311 123589999999999
Q ss_pred CCCccCCC-CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHH
Q 010845 179 GAEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (499)
Q Consensus 179 G~~~~~~~-ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~ 257 (499)
|+.|..|+ +||.++..+ +..+. +.....| ++++|||||++|+|+|..+++++
T Consensus 156 Gs~p~~p~~i~G~~~~~~---~~~~~----------~~~~~~~----------~~vvViGgG~ig~E~A~~l~~~g---- 208 (488)
T 3dgz_A 156 GGRPRYPTQVKGALEYGI---TSDDI----------FWLKESP----------GKTLVVGASYVALECAGFLTGIG---- 208 (488)
T ss_dssp CEEECCCSSCBTHHHHCB---CHHHH----------TTCSSCC----------CSEEEECCSHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCCCcccccC---cHHHH----------HhhhhcC----------CeEEEECCCHHHHHHHHHHHHcC----
Confidence 99999998 999855432 22221 2222233 48999999999999999999887
Q ss_pred HHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC---C--eEEECC---Cc--EEeeeE
Q 010845 258 RQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---Q--KLILND---GT--EVPYGL 326 (499)
Q Consensus 258 ~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---~--~v~~~~---g~--~i~~D~ 326 (499)
.+|+++++.++++.+++++.+.+.+.|++.||+++++ .+.+++. + .+.+.+ |+ ++++|.
T Consensus 209 ----------~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~ 278 (488)
T 3dgz_A 209 ----------LDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDT 278 (488)
T ss_dssp ----------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESE
T ss_pred ----------CceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCE
Confidence 8999999988899999999999999999999999999 7888853 2 255543 54 579999
Q ss_pred EEEcCCCCcch-h--cccCCCCCC-CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 010845 327 LVWSTGVGPST-L--VKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402 (499)
Q Consensus 327 vi~a~G~~p~~-~--~~~~~l~~~-~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i 402 (499)
||+|+|++|+. + ++..+++++ ++|+|.||+++|| +.|||||+|||+. + .|.+++.|..||+++|+||
T Consensus 279 vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~-----~---~~~~~~~A~~~g~~aa~~i 349 (488)
T 3dgz_A 279 VLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEAT-SVPHIYAIGDVAE-----G---RPELTPTAIKAGKLLAQRL 349 (488)
T ss_dssp EEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBC-SSTTEEECGGGBT-----T---CCCCHHHHHHHHHHHHHHH
T ss_pred EEEcccCCcccCcCCccccCcEecCCCCeEeECCCCcc-CCCCEEEeEEecC-----C---CCcchhHHHHHHHHHHHHH
Confidence 99999999994 4 567789998 7899999999999 9999999999984 2 2778999999999999998
Q ss_pred HH
Q 010845 403 NR 404 (499)
Q Consensus 403 ~~ 404 (499)
..
T Consensus 350 ~g 351 (488)
T 3dgz_A 350 FG 351 (488)
T ss_dssp HS
T ss_pred cC
Confidence 63
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=309.73 Aligned_cols=291 Identities=17% Similarity=0.208 Sum_probs=211.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----h---------------hhh-ccCCCCCccccchh
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A---------------STC-VGTLEFRSVAEPIA 121 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~---------------~~~-~g~~~~~~~~~~~~ 121 (499)
+++|+|||||+||+++|..|++.|++|+|||+++.+...... + ... .|. .......++.
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi-~~~~~~~~~~ 84 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGI-KYPEPELDID 84 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTC-CCCCCCCCHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCc-ccCCCccCHH
Confidence 478999999999999999999999999999997665321100 0 000 011 1000001111
Q ss_pred hh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCc---cccCCCceeeeeCCeEEEcCCCCccC
Q 010845 122 RI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE---LRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 122 ~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~---~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
.+ ........++.++.+++..++. +.+.+...++. .....++..++.||+||+|||+.|..
T Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~ 162 (482)
T 1ojt_A 85 MLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTK 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET--TEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccC--CEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCC
Confidence 10 0111223578888887766654 45555321100 00000112479999999999999887
Q ss_pred CC-CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCC
Q 010845 185 FG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (499)
Q Consensus 185 ~~-ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~ 263 (499)
|+ +| .+.. +.+..++.. ... ..++++|||||++|+|+|..|.+++
T Consensus 163 ~~~i~-~~~~---v~~~~~~~~----------~~~----------~~~~vvViGgG~ig~E~A~~l~~~G---------- 208 (482)
T 1ojt_A 163 LPFIP-EDPR---IIDSSGALA----------LKE----------VPGKLLIIGGGIIGLEMGTVYSTLG---------- 208 (482)
T ss_dssp CSSCC-CCTT---EECHHHHTT----------CCC----------CCSEEEEESCSHHHHHHHHHHHHHT----------
T ss_pred CCCCC-ccCc---EEcHHHHhc----------ccc----------cCCeEEEECCCHHHHHHHHHHHHcC----------
Confidence 76 66 3222 234333221 111 2359999999999999999999887
Q ss_pred CCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECC----CcEEeeeEEEEcCCC
Q 010845 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILND----GTEVPYGLLVWSTGV 333 (499)
Q Consensus 264 ~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~----g~~i~~D~vi~a~G~ 333 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .+++++ |+++++|.||+|+|+
T Consensus 209 ----~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 209 ----SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp ----CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred ----CeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 899999987 7899999999999999999999999999 89988643 366666 778999999999999
Q ss_pred Ccch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 334 GPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 334 ~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+|+. + ++.++++++++|+|.||+++|| +.|||||+|||+.. +++++.|.+||+++|.||.
T Consensus 285 ~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~ 347 (482)
T 1ojt_A 285 APNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQ---------PMLAHKAVHEGHVAAENCA 347 (482)
T ss_dssp EECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTCS---------SCCHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCChhhcCceeCCCCCEeeCCCccc-CCCCEEEEEcccCC---------CccHHHHHHHHHHHHHHHc
Confidence 9994 4 5788999988899999999999 99999999999951 6788999999999999986
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=311.02 Aligned_cols=284 Identities=24% Similarity=0.293 Sum_probs=213.5
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----h-----------hhh-----ccCC------CC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STC-----VGTL------EF 113 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~-----------~~~-----~g~~------~~ 113 (499)
+.+++|+|||||+||+++|..|++.|++|+|||++. +...... + ... .+.. +.
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW 96 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence 345899999999999999999999999999999764 2211000 0 000 0100 00
Q ss_pred Ccccc-------chhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC-
Q 010845 114 RSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF- 185 (499)
Q Consensus 114 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~- 185 (499)
..+.. .+...........++.++.+++..++.....+... + .++.||+||||||+.|..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~----g--------~~~~~d~lviAtG~~p~~p~ 164 (478)
T 3dk9_A 97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVS----G--------KKYTAPHILIATGGMPSTPH 164 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEET----T--------EEEECSCEEECCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEEC----C--------EEEEeeEEEEccCCCCCCCC
Confidence 00000 01111111122357888888888888776666532 1 4799999999999999998
Q ss_pred --CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCC
Q 010845 186 --GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (499)
Q Consensus 186 --~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~ 263 (499)
++||.+ +. .+..+. +.....| ++++|||||++|+|+|..+.+++
T Consensus 165 ~~~i~G~~-~~---~~~~~~----------~~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g---------- 210 (478)
T 3dk9_A 165 ESQIPGAS-LG---ITSDGF----------FQLEELP----------GRSVIVGAGYIAVEMAGILSALG---------- 210 (478)
T ss_dssp TTTSTTGG-GS---BCHHHH----------TTCCSCC----------SEEEEECCSHHHHHHHHHHHHTT----------
T ss_pred cCCCCCCc-ee---EchHHh----------hchhhcC----------ccEEEECCCHHHHHHHHHHHHcC----------
Confidence 899975 21 222221 2222223 59999999999999999999887
Q ss_pred CCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e----EEECC---C----cEEeeeEEE
Q 010845 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K----LILND---G----TEVPYGLLV 328 (499)
Q Consensus 264 ~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~----v~~~~---g----~~i~~D~vi 328 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ + +.+.+ | +++++|.||
T Consensus 211 ----~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi 286 (478)
T 3dk9_A 211 ----SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL 286 (478)
T ss_dssp ----CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEE
T ss_pred ----CeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEE
Confidence 899999986 7889999999999999999999999999 89888642 3 55554 2 679999999
Q ss_pred EcCCCCcch--h-cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 329 WSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 329 ~a~G~~p~~--~-~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
+|+|++|+. + ++.++++++++|+|.||+++|| +.|||||+|||+. . |++++.|..||+.+|+||..
T Consensus 287 ~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~------~---~~~~~~A~~~g~~aa~~i~~ 355 (478)
T 3dk9_A 287 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG------K---ALLTPVAIAAGRKLAHRLFE 355 (478)
T ss_dssp ECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC-SSTTEEECGGGGC------S---SCCHHHHHHHHHHHHHHHHS
T ss_pred EeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc-CCCCEEEEEecCC------C---CccHhHHHHHHHHHHHHHcC
Confidence 999999994 3 6788999999999999999999 9999999999993 2 78899999999999999864
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=309.94 Aligned_cols=285 Identities=19% Similarity=0.244 Sum_probs=209.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------cc---hh-----hhhc---cCCCC-Cccccchhh
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------PL---LA-----STCV---GTLEF-RSVAEPIAR 122 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~~---~~-----~~~~---g~~~~-~~~~~~~~~ 122 (499)
+++|+|||||+||+++|..|++.|++|+|||++. +... |. +. .... ..... .....++..
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGI 81 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHH
Confidence 3689999999999999999999999999999973 2211 00 00 0000 00000 000001110
Q ss_pred --------------hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC
Q 010845 123 --------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (499)
Q Consensus 123 --------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip 188 (499)
.........++.++.+++..+ +.+.+.+...+ + +..++.||+||+|||+.|..|+++
T Consensus 82 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~i--d~~~v~V~~~~-G------~~~~~~~d~lViAtG~~~~~~~~~ 152 (464)
T 2a8x_A 82 AYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFA--DANTLLVDLND-G------GTESVTFDNAIIATGSSTRLVPGT 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEES--SSSEEEEEETT-S------CCEEEEEEEEEECCCEEECCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCeEEEEeCC-C------ceEEEEcCEEEECCCCCCCCCCCC
Confidence 001112235788887776554 44556554311 1 114799999999999999988888
Q ss_pred CccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010845 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 189 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
|.+.. +.+..++.. ... ..++++|||||++|+|+|..+.+++ .
T Consensus 153 g~~~~---~~~~~~~~~----------~~~----------~~~~vvViGgG~~g~E~A~~l~~~g--------------~ 195 (464)
T 2a8x_A 153 SLSAN---VVTYEEQIL----------SRE----------LPKSIIIAGAGAIGMEFGYVLKNYG--------------V 195 (464)
T ss_dssp CCBTT---EECHHHHHT----------CSS----------CCSEEEEECCSHHHHHHHHHHHHTT--------------C
T ss_pred CCCce---EEecHHHhh----------ccc----------cCCeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 87543 223333321 111 2359999999999999999999887 8
Q ss_pred EEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEC-CC--cEEeeeEEEEcCCCCcch-h
Q 010845 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN-DG--TEVPYGLLVWSTGVGPST-L 338 (499)
Q Consensus 269 ~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~-~g--~~i~~D~vi~a~G~~p~~-~ 338 (499)
+|+++++. +++|.+++++.+.+.+.|++.||+++++ +|.+++.+ . +.++ +| +++++|.||+|+|.+|+. +
T Consensus 196 ~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 275 (464)
T 2a8x_A 196 DVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG 275 (464)
T ss_dssp EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred eEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence 99999987 7899999999999999999999999999 89998753 2 4443 66 689999999999999994 4
Q ss_pred --cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 --VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 --~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++.++++++++|+|.||+++|| +.|||||+|||+.. +++++.|.+||+++|+||.
T Consensus 276 l~~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~ 332 (464)
T 2a8x_A 276 YGLDKAGVALTDRKAIGVDDYMRT-NVGHIYAIGDVNGL---------LQLAHVAEAQGVVAAETIA 332 (464)
T ss_dssp SCHHHHTCCBCTTSSBCCCTTSBC-SSTTEEECGGGGCS---------SCSHHHHHHHHHHHHHHHH
T ss_pred CCchhcCCccCCCCCEeECcCCcc-CCCCEEEeECcCCC---------ccCHHHHHHHHHHHHHHhc
Confidence 5777898888899999999998 99999999999951 6788999999999999986
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=312.04 Aligned_cols=287 Identities=22% Similarity=0.280 Sum_probs=212.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----hh----------------h-hccCCCCCccccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS----------------T-CVGTLEFRSVAEP 119 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~----------------~-~~g~~~~~~~~~~ 119 (499)
.+++|+|||||+||+++|..|++.|++|+|||+++.+...... +. . ..|. .......+
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 83 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGV-KVSNVEID 83 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTE-EESCEEEC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCc-ccCCCccC
Confidence 4589999999999999999999999999999998765432110 00 0 0010 00000001
Q ss_pred hhh--------------hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 120 IAR--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 120 ~~~--------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.. .........++.++.+++..++. +.+.+...+ + +...+.||+||+|||+.|..|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~~~-G------~~~~i~~d~lIiAtGs~p~~p 154 (470)
T 1dxl_A 84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSP--SEISVDTIE-G------ENTVVKGKHIIIATGSDVKSL 154 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEET--TEEEECCSS-S------CCEEEECSEEEECCCEEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEEEeCC-C------ceEEEEcCEEEECCCCCCCCC
Confidence 111 00111222467888877666765 345554311 1 124799999999999999988
Q ss_pred CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 186 ~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
+++|.+.. .+.+..++. .... ..++|+|||||++|+|+|..|.+.+
T Consensus 155 ~~~g~~~~--~v~~~~~~~----------~~~~----------~~~~vvViGgG~~g~e~A~~l~~~g------------ 200 (470)
T 1dxl_A 155 PGVTIDEK--KIVSSTGAL----------ALSE----------IPKKLVVIGAGYIGLEMGSVWGRIG------------ 200 (470)
T ss_dssp TTBCCCSS--SEECHHHHT----------TCSS----------CCSEEEESCCSHHHHHHHHHHHHHT------------
T ss_pred CCCCCCcc--cEEeHHHhh----------hhhh----------cCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 88887531 122332221 1111 2359999999999999999999887
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEC---CC--cEEeeeEEEEcCCCC
Q 010845 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN---DG--TEVPYGLLVWSTGVG 334 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~---~g--~~i~~D~vi~a~G~~ 334 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .+.++ +| +++++|.||+|+|++
T Consensus 201 --~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 278 (470)
T 1dxl_A 201 --SEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRT 278 (470)
T ss_dssp --CEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEE
T ss_pred --CcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCC
Confidence 899999987 7889999999999999999999999999 89999864 24443 45 689999999999999
Q ss_pred cch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 335 PST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 335 p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|+. + ++.++++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+++|.||.
T Consensus 279 p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~ 340 (470)
T 1dxl_A 279 PFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIPG---------PMLAHKAEEDGVACVEYLA 340 (470)
T ss_dssp ECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSSS---------CCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEEeccCCC---------CccHHHHHHHHHHHHHHHc
Confidence 994 5 6778898888899999999998 99999999999951 6788999999999999986
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=308.63 Aligned_cols=283 Identities=21% Similarity=0.303 Sum_probs=210.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh-----------hh-----ccCCCCCccccchh
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------TC-----VGTLEFRSVAEPIA 121 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~-----------~~-----~g~~~~~~~~~~~~ 121 (499)
+++|+|||||+||+++|..|++.|++|+|||++ .+..... .+. .. .|. .......++.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ 80 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGI-KAENVTIDFA 80 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTE-ECCSCEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCc-ccCCCccCHH
Confidence 478999999999999999999999999999997 3221100 000 00 010 0000001111
Q ss_pred h--------------hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 122 R--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 122 ~--------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
. .........++.++.+++..++.. .+.+...+ + ..++.||+||+|||+.|..|++
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~--~v~V~~~~-G-------~~~i~~d~lViATGs~p~~~~~ 150 (455)
T 1ebd_A 81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDAN--TVRVVNGD-S-------AQTYTFKNAIIATGSRPIELPN 150 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETT--EEEEEETT-E-------EEEEECSEEEECCCEEECCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--eEEEEeCC-C-------cEEEEeCEEEEecCCCCCCCCC
Confidence 1 111122346788888877777653 45544311 1 1479999999999999998888
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
+|.++. +.+..++.. ... ..++|+|||||++|+|+|..|.+.+
T Consensus 151 ~g~~~~---v~~~~~~~~----------~~~----------~~~~vvViGgG~~g~e~A~~l~~~g-------------- 193 (455)
T 1ebd_A 151 FKFSNR---ILDSTGALN----------LGE----------VPKSLVVIGGGYIGIELGTAYANFG-------------- 193 (455)
T ss_dssp BCCCSS---EECHHHHHT----------CSS----------CCSEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCccce---EecHHHHhc----------ccc----------CCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 887543 223333221 111 2359999999999999999999887
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE--EEC---CCcEEeeeEEEEcCCCCcch-
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILN---DGTEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v--~~~---~g~~i~~D~vi~a~G~~p~~- 337 (499)
.+|+++++. +++|.+++++.+.+.+.+++.||+++++ +|.+++. +.+ .++ +++++++|.||+|+|.+|+.
T Consensus 194 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 194 TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred CcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence 899999987 7889999999999999999999999999 8988864 233 333 45689999999999999994
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+ ++.++++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+.+|+||.
T Consensus 274 ~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~ 331 (455)
T 1ebd_A 274 ELGLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVPG---------PALAHKASYEGKVAAEAIA 331 (455)
T ss_dssp SSSTTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHT
T ss_pred cCChhhcCCccCCCCCEeeCCCccc-CCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHHc
Confidence 4 5777888888899999999998 99999999999951 6788999999999999986
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=312.16 Aligned_cols=286 Identities=23% Similarity=0.288 Sum_probs=213.3
Q ss_pred CcEEEECCchHHHHHHHhccCC---CCeEEEEcCCCCcccc-------c---chhh---------hh-ccCCC-CCcccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMVFT-------P---LLAS---------TC-VGTLE-FRSVAE 118 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~---g~~V~lie~~~~~~~~-------~---~~~~---------~~-~g~~~-~~~~~~ 118 (499)
++|||||||+||+++|..|++. |++|+|||+++ +... | ++.. .. .|... ......
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI 81 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence 6899999999999999999998 99999999986 3221 0 0000 00 01100 000001
Q ss_pred chhhh--------------ccccccCCCeEEEEEEEEEEECC----CCEEEEeeecCccccCCCceeeeeCCeEEEcCCC
Q 010845 119 PIARI--------------QPAISREPGSYFFLSHCAGIDTD----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (499)
Q Consensus 119 ~~~~~--------------~~~~~~~~~~~~~~~~v~~id~~----~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~ 180 (499)
++..+ ...+....++.++.+++..++.+ .+.+.+...+ + +...+.||+||+|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~-g------~~~~~~~d~lviATGs 154 (499)
T 1xdi_A 82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAAD-G------STSEHEADVVLVATGA 154 (499)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTT-S------CEEEEEESEEEECCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCC-C------cEEEEEeCEEEEcCCC
Confidence 11110 11122235788888888888773 2455554311 1 1137999999999999
Q ss_pred CccCCCCCCcccc-CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHH
Q 010845 181 EASTFGIHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (499)
Q Consensus 181 ~~~~~~ipG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~ 259 (499)
.|..|++||.+.. .++.. +. +.... ..++++|||+|++|+|+|..+..++
T Consensus 155 ~p~~p~i~g~~~~~v~~~~---~~----------~~~~~----------~~~~vvViGgG~ig~E~A~~l~~~g------ 205 (499)
T 1xdi_A 155 SPRILPSAQPDGERILTWR---QL----------YDLDA----------LPDHLIVVGSGVTGAEFVDAYTELG------ 205 (499)
T ss_dssp EECCCGGGCCCSSSEEEGG---GG----------GGCSS----------CCSSEEEESCSHHHHHHHHHHHHTT------
T ss_pred CCCCCCCCCCCcCcEEehh---Hh----------hhhhc----------cCCeEEEECCCHHHHHHHHHHHHcC------
Confidence 9999989987532 22221 11 11111 2359999999999999999999887
Q ss_pred hcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 260 RYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 260 ~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.+|+++++. ++++.+++++.+.+.+.+++.||+++++ +|.+++.+ .+.+.+|+++++|.||+|+|.
T Consensus 206 --------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 277 (499)
T 1xdi_A 206 --------VPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGS 277 (499)
T ss_dssp --------CCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred --------CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCC
Confidence 899999987 7889999999999999999999999999 89998754 245568889999999999999
Q ss_pred Ccch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 334 GPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 334 ~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+|+. + ++.++++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+++|+||.
T Consensus 278 ~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~ 340 (499)
T 1xdi_A 278 VPNTSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTGL---------LPLASVAAMQGRIAMYHAL 340 (499)
T ss_dssp EECCSSSCTTTTTCCCBTTTBCCCCSSSBC-SSTTEEECSGGGTS---------CSCHHHHHHHHHHHHHHHT
T ss_pred CcCCCcCCchhcCceECCCCCEEECCCccc-CCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHhc
Confidence 9995 5 6778899988899999999999 99999999999952 5678999999999999985
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=307.49 Aligned_cols=314 Identities=19% Similarity=0.252 Sum_probs=220.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh----------------hh----h-ccCCCCCccccch
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA----------------ST----C-VGTLEFRSVAEPI 120 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~----------------~~----~-~g~~~~~~~~~~~ 120 (499)
+++|+|||||+||+++|..|++.|++|+|||+++.+....... .. . .|.........++
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 84 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV 84 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 4789999999999999999999999999999976543221100 00 0 0000000000111
Q ss_pred hhh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceee------eeCCeEEEcCCC
Q 010845 121 ARI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFK------ISYDKLVIALGA 180 (499)
Q Consensus 121 ~~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~------i~yd~LViAtG~ 180 (499)
..+ ........++.++.++...+ +.+.+.+...+ + +... +.||+||+|||+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~V~~~~-G------~~~~~~~~~~i~~d~lViAtGs 155 (478)
T 1v59_A 85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE--DETKIRVTPVD-G------LEGTVKEDHILDVKNIIVATGS 155 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES--SSSEEEEECCT-T------CTTCCSSCEEEEEEEEEECCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEecC-C------CcccccccceEEeCEEEECcCC
Confidence 110 01111235788887765544 44556554321 1 0124 999999999999
Q ss_pred CccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHh
Q 010845 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (499)
Q Consensus 181 ~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~ 260 (499)
.|. .+||.......+.+..++.. .... .++++|||||++|+|+|..|++.+
T Consensus 156 ~p~--~~~g~~~~~~~v~~~~~~~~----------~~~~----------~~~vvViGgG~~g~e~A~~l~~~g------- 206 (478)
T 1v59_A 156 EVT--PFPGIEIDEEKIVSSTGALS----------LKEI----------PKRLTIIGGGIIGLEMGSVYSRLG------- 206 (478)
T ss_dssp EEC--CCTTCCCCSSSEECHHHHTT----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT-------
T ss_pred CCC--CCCCCCCCCceEEcHHHHHh----------hhcc----------CceEEEECCCHHHHHHHHHHHHcC-------
Confidence 873 45665321122334433321 1112 359999999999999999999887
Q ss_pred cCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C----eEEEC-----CCcEEeeeEE
Q 010845 261 YSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q----KLILN-----DGTEVPYGLL 327 (499)
Q Consensus 261 ~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~----~v~~~-----~g~~i~~D~v 327 (499)
.+||++++. ++++.+++++.+.+.+.+++.||+++++ +|.+++. + .+.++ +++++++|.|
T Consensus 207 -------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~v 279 (478)
T 1v59_A 207 -------SKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL 279 (478)
T ss_dssp -------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEE
T ss_pred -------CEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEE
Confidence 899999987 7889999999999999999999999999 8999874 2 35554 3568999999
Q ss_pred EEcCCCCcch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 328 VWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 328 i~a~G~~p~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|+|+|.+|+. +++.++++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+.+|+||..
T Consensus 280 v~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 280 LVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDVTFG---------PMLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp EECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCcCCCCCCchhcCceeCCCCCEeECcCCcc-CCCCEEEeeccCCC---------cccHHHHHHHHHHHHHHHcC
Confidence 9999999994 67888999988999999999998 99999999999952 67789999999999999874
Q ss_pred HHHhCCCCCCCcCcCCCCCCceecccceEEEecCC
Q 010845 405 IGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRY 439 (499)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~ 439 (499)
.. .. .++. ..|+......+++++|..
T Consensus 350 ~~----~~----~~~~-~~p~~~~~~~~~a~vG~~ 375 (478)
T 1v59_A 350 GH----GH----VNYN-NIPSVMYSHPEVAWVGKT 375 (478)
T ss_dssp SC----CC----CCTT-SCCEEECSSSEEEEEECC
T ss_pred CC----CC----CCCC-CCCEEEEcCCcEEEEECC
Confidence 21 10 1112 246665555677887753
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=290.92 Aligned_cols=284 Identities=13% Similarity=0.142 Sum_probs=209.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch--hhh----hccCC--CCCccccchhhhccccccCCCe
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL--AST----CVGTL--EFRSVAEPIARIQPAISREPGS 133 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~--~~~----~~g~~--~~~~~~~~~~~~~~~~~~~~~~ 133 (499)
+++|+|||||+||+++|..|++.|++|+|||+++.+...... +.. ..+.. ...++...+.+. +.. .++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-~~~ 80 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQ---VAP-FNP 80 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHH---HGG-GCC
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHH---HHH-cCC
Confidence 479999999999999999999999999999998765432210 000 00000 001111112221 222 345
Q ss_pred EEE-EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC---CccCCCCCCccccC-----ccCCCHHHHH
Q 010845 134 YFF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHGVKENA-----TFLREVHHAQ 204 (499)
Q Consensus 134 ~~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~---~~~~~~ipG~~~~~-----~~~~~~~~~~ 204 (499)
.++ ..+|+.++.+.+.+.+... ++ .++.||+||+|||+ .|..+++||.+... ..+++.
T Consensus 81 ~~~~~~~v~~i~~~~~~~~v~~~-~g--------~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~---- 147 (335)
T 2zbw_A 81 VYSLGERAETLEREGDLFKVTTS-QG--------NAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSK---- 147 (335)
T ss_dssp EEEESCCEEEEEEETTEEEEEET-TS--------CEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCG----
T ss_pred EEEeCCEEEEEEECCCEEEEEEC-CC--------CEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCch----
Confidence 554 4588888877655555431 11 37899999999999 57777888864321 111111
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCCC
Q 010845 205 EIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFD 283 (499)
Q Consensus 205 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~~ 283 (499)
+....++|+|||+|++|+|+|..|.+.+ .+|+++++.+ +++ .
T Consensus 148 ---------------------~~~~~~~v~viG~G~~g~e~a~~l~~~g--------------~~V~~v~~~~~~~~--~ 190 (335)
T 2zbw_A 148 ---------------------AEFQGKRVLIVGGGDSAVDWALNLLDTA--------------RRITLIHRRPQFRA--H 190 (335)
T ss_dssp ---------------------GGGTTCEEEEECSSHHHHHHHHHTTTTS--------------SEEEEECSSSSCCS--C
T ss_pred ---------------------hhcCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEcCCccCc--c
Confidence 0113469999999999999999998765 8999999874 433 3
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEC---CC--cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCce
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRI 352 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i 352 (499)
+...+.+.+.+++.||+++.+ .|.+++.+ .|.++ +| +++++|.||+|+|++|+ ++++.++++.+ +|+|
T Consensus 191 ~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i 269 (335)
T 2zbw_A 191 EASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALE-KNKI 269 (335)
T ss_dssp HHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEE-TTEE
T ss_pred HHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceecc-CCee
Confidence 567788888899999999999 89998765 57776 67 68999999999999998 58888888876 6899
Q ss_pred eeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 353 ~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.||+++|+ +.|||||+|||+..+. .++++..|..||+.+|+||...+.
T Consensus 270 ~vd~~~~t-~~~~vya~GD~~~~~~------~~~~~~~A~~~g~~aa~~i~~~l~ 317 (335)
T 2zbw_A 270 KVDTTMAT-SIPGVYACGDIVTYPG------KLPLIVLGFGEAAIAANHAAAYAN 317 (335)
T ss_dssp ECCTTCBC-SSTTEEECSTTEECTT------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eeCCCCCC-CCCCEEEeccccccCc------chhhhhhhHHHHHHHHHHHHHHhh
Confidence 99999998 9999999999997421 367899999999999999998875
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=295.67 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=206.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc--chhhh--h---ccCCC---CCccccchhhhcccccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP--LLAST--C---VGTLE---FRSVAEPIARIQPAISR 129 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~--~~~~~--~---~g~~~---~~~~~~~~~~~~~~~~~ 129 (499)
..+++|+|||||++|+++|..|++.|++|+|||+++.....+ .+... . .+... ..++...+.. ...
T Consensus 20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 95 (338)
T 3itj_A 20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMRE----QST 95 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHH----HHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHH----HHH
Confidence 345899999999999999999999999999999965211111 00000 0 01110 1111112222 222
Q ss_pred CCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHH
Q 010845 130 EPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRK 209 (499)
Q Consensus 130 ~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~ 209 (499)
..++.++.++|+.++.+.+.+.+.....+ ....+.||+||+|||+.+..|.+||.+.... ..+.........
T Consensus 96 ~~gv~i~~~~v~~i~~~~~~~~v~~~~~~------~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~--~~~~~~~~~~~~ 167 (338)
T 3itj_A 96 KFGTEIITETVSKVDLSSKPFKLWTEFNE------DAEPVTTDAIILATGASAKRMHLPGEETYWQ--KGISACAVCDGA 167 (338)
T ss_dssp HTTCEEECSCEEEEECSSSSEEEEETTCS------SSCCEEEEEEEECCCEEECCCCCTTHHHHBT--TTEESCHHHHTT
T ss_pred HcCCEEEEeEEEEEEEcCCEEEEEEEecC------CCcEEEeCEEEECcCCCcCCCCCCCchhccC--ccEEEchhcccc
Confidence 35778887789999998887776542111 1247899999999999999999999753110 011100100000
Q ss_pred HHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCCCHHHHH
Q 010845 210 LLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRH 288 (499)
Q Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~~~~~~~ 288 (499)
......++|+|||+|++|+|+|..|.+.+ .+|+++++.. +++ .+
T Consensus 168 ---------------~~~~~~~~v~vvG~G~~g~e~a~~l~~~g--------------~~v~~v~~~~~~~~------~~ 212 (338)
T 3itj_A 168 ---------------VPIFRNKPLAVIGGGDSACEEAQFLTKYG--------------SKVFMLVRKDHLRA------ST 212 (338)
T ss_dssp ---------------SGGGTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS------CH
T ss_pred ---------------hhhcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCccCC------CH
Confidence 00123469999999999999999998876 8999999874 433 23
Q ss_pred HHHHHHHhC-CCEEEeC-ceEEEeCCe-----EEECC-----CcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceee-
Q 010845 289 YATTQLSKS-GVRLVRG-IVKDVDSQK-----LILND-----GTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGI- 354 (499)
Q Consensus 289 ~~~~~l~~~-gV~v~~~-~v~~v~~~~-----v~~~~-----g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~v- 354 (499)
.+.+.+.+. ||+++.+ .|.+++.+. |++++ ++++++|.||+|+|+.|+. ++.. +++++++|++.|
T Consensus 213 ~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~ 291 (338)
T 3itj_A 213 IMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTV 291 (338)
T ss_dssp HHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCC
T ss_pred HHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEc
Confidence 445556554 9999999 899987653 77765 4689999999999999995 4444 888899999985
Q ss_pred CCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 355 d~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|+++++ +.|||||+|||+. ..++.+..|+.||+.||.+|...+.
T Consensus 292 ~~~~~t-~~~~vya~GD~~~--------~~~~~~~~A~~~g~~aa~~i~~~l~ 335 (338)
T 3itj_A 292 PGSSLT-SVPGFFAAGDVQD--------SKYRQAITSAGSGCMAALDAEKYLT 335 (338)
T ss_dssp TTSSBC-SSTTEEECGGGGC--------SSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred Cccccc-CCCCEEEeeccCC--------CCccceeeehhhhHHHHHHHHHHHh
Confidence 788888 9999999999995 1267899999999999999999886
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=307.63 Aligned_cols=278 Identities=20% Similarity=0.245 Sum_probs=208.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc----cchhh-----------h-----hccCCCCCccccchh
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLAS-----------T-----CVGTLEFRSVAEPIA 121 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~----~~~~~-----------~-----~~g~~~~~~~~~~~~ 121 (499)
+++|+|||||+||+++|..|++.|++|+|||+++ +... ...+. . ..|.. .....++.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~--~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLK--AKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEE--CCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCC--CCCCcCHH
Confidence 4799999999999999999999999999999986 2111 00000 0 00110 00011111
Q ss_pred hh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC-
Q 010845 122 RI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG- 186 (499)
Q Consensus 122 ~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~- 186 (499)
.+ ...+....++.++.+++..++. +.|.+. + .++.||+||||||+.|..|+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~----g--------~~~~~d~lViATGs~p~~p~g 148 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGP--KEVEVG----G--------ERYGAKSLILATGSEPLELKG 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEET----T--------EEEEEEEEEECCCEEECCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccC--CEEEEc----c--------EEEEeCEEEEcCCCCCCCCCC
Confidence 11 0111223578888887777764 566653 1 37999999999999998775
Q ss_pred CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010845 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 187 ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
+|| ++. +.+..++..+ .. ...++++|||||++|+|+|..|++++
T Consensus 149 i~~-~~~---v~~~~~~~~l----------~~---------~~~~~vvViGgG~~g~e~A~~l~~~g------------- 192 (464)
T 2eq6_A 149 FPF-GED---VWDSTRALKV----------EE---------GLPKRLLVIGGGAVGLELGQVYRRLG------------- 192 (464)
T ss_dssp BCC-SSS---EECHHHHTCG----------GG---------CCCSEEEEECCSHHHHHHHHHHHHTT-------------
T ss_pred CCC-CCc---EEcHHHHHhh----------hh---------hcCCEEEEECCCHHHHHHHHHHHHCC-------------
Confidence 666 222 2244333221 11 01259999999999999999999877
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEC-C--Cc--EEeeeEEEEcCCCCc
Q 010845 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN-D--GT--EVPYGLLVWSTGVGP 335 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~-~--g~--~i~~D~vi~a~G~~p 335 (499)
.+|+++++. ++++.+++++.+.+.+.+++.||+++++ +|.+++.+ .+.++ + |+ ++++|.||+|+|.+|
T Consensus 193 -~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p 271 (464)
T 2eq6_A 193 -AEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKP 271 (464)
T ss_dssp -CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEE
T ss_pred -CeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCccc
Confidence 899999987 6889999999999999999999999999 89988643 25555 6 76 899999999999999
Q ss_pred ch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 336 ST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 336 ~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+. + ++.++++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+.+|+||.
T Consensus 272 ~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~---------~~l~~~A~~~g~~aa~~i~ 332 (464)
T 2eq6_A 272 RTEGLGLEKAGVKVDERGFIRVNARMET-SVPGVYAIGDAARP---------PLLAHKAMREGLIAAENAA 332 (464)
T ss_dssp SCTTSSHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGTCS---------SCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCChhhcCceecCCCCEEECCCccc-CCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHhc
Confidence 94 3 4677888888899999999998 99999999999941 6788999999999999986
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=289.95 Aligned_cols=283 Identities=17% Similarity=0.202 Sum_probs=201.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCC-Ccc-ccchhhhccccccCCCeEEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEF-RSV-AEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
+++|+|||||+||+++|..|++.|++|+|||++. ................. ..+ ...+...........++.++.++
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~ 86 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMDE 86 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEeee
Confidence 4799999999999999999999999999999983 22111100000000000 000 01111111112223467777789
Q ss_pred EEEEECC--CC---EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHHH
Q 010845 140 CAGIDTD--NH---VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLL 211 (499)
Q Consensus 140 v~~id~~--~~---~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~ 211 (499)
|+.++.+ .+ .+.+.+ + .++.||+||+|||+.|..|++||.++. ..+.....+ .
T Consensus 87 v~~i~~~~~~~~~~~v~~~~---g--------~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~------~-- 147 (325)
T 2q7v_A 87 VQGVQHDATSHPYPFTVRGY---N--------GEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCD------G-- 147 (325)
T ss_dssp EEEEEECTTSSSCCEEEEES---S--------CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHH------G--
T ss_pred EEEEEeccCCCceEEEEECC---C--------CEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCC------H--
Confidence 9999876 43 444432 2 379999999999999999999997532 111111100 0
Q ss_pred HHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHH
Q 010845 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291 (499)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~ 291 (499)
. ....++|+|||+|++|+|+|..|.+.+ .+|+++++.+.+. .++.+ .
T Consensus 148 --~------------~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~~----~ 194 (325)
T 2q7v_A 148 --F------------FYKGKKVVVIGGGDAAVEEGMFLTKFA--------------DEVTVIHRRDTLR-ANKVA----Q 194 (325)
T ss_dssp --G------------GGTTCEEEEECCSHHHHHHHHHHTTTC--------------SEEEEECSSSSCC-SCHHH----H
T ss_pred --H------------HcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEeCCCcCC-cchHH----H
Confidence 0 112359999999999999999998766 8999999874332 23332 3
Q ss_pred HHH-HhCCCEEEeC-ceEEEeCC----eEEEC---CCc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCC
Q 010845 292 TQL-SKSGVRLVRG-IVKDVDSQ----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLR 359 (499)
Q Consensus 292 ~~l-~~~gV~v~~~-~v~~v~~~----~v~~~---~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~ 359 (499)
+.+ ++.||+++++ +|.+++.+ +|.++ +|+ ++++|.||+|+|++|+ ++++.+ ++++++|+|.||+++|
T Consensus 195 ~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~ 273 (325)
T 2q7v_A 195 ARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIY 273 (325)
T ss_dssp HHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTB
T ss_pred HHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCc
Confidence 334 4569999999 89998765 57775 665 7999999999999999 577766 7778889999999999
Q ss_pred CCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 360 ~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+ +.|||||+|||+.. .++++..|.+||+.+|.||...+.
T Consensus 274 t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 312 (325)
T 2q7v_A 274 T-NIPMLFAAGDVSDY--------IYRQLATSVGAGTRAAMMTERQLA 312 (325)
T ss_dssp C-SSTTEEECSTTTCS--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCEEEeecccCc--------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 99999999999952 267899999999999999999886
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=305.28 Aligned_cols=289 Identities=22% Similarity=0.260 Sum_probs=209.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhh---------------hhcc-----CCCCCccccch
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TCVG-----TLEFRSVAEPI 120 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~---------------~~~g-----~~~~~~~~~~~ 120 (499)
.++||+|||||+||+++|..|++.|++|+|||+++.+........ .... .........++
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 103 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL 103 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence 357999999999999999999999999999999876543211000 0000 00000000111
Q ss_pred hh--------------hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 121 AR--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 121 ~~--------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
.. .........++.++.+++..++. +.+.+...+ ++..++.||+||||||+.| +.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~-------g~~~~~~~d~lViATGs~p--~~ 172 (491)
T 3urh_A 104 QKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQ--GKVSVTNEK-------GEEQVLEAKNVVIATGSDV--AG 172 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSS--SEEEEECTT-------SCEEEEECSEEEECCCEEC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecC--CEEEEEeCC-------CceEEEEeCEEEEccCCCC--CC
Confidence 11 01111223578888888777654 455554311 1235799999999999985 46
Q ss_pred CCCccc--cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010845 187 IHGVKE--NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (499)
Q Consensus 187 ipG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~ 264 (499)
+||+.+ ....+.+..+. +.... ..++|+|||||++|+|+|..|.+++
T Consensus 173 ipg~~~~~~~~~~~~~~~~----------~~~~~----------~~~~vvViGgG~~g~E~A~~l~~~g----------- 221 (491)
T 3urh_A 173 IPGVEVAFDEKTIVSSTGA----------LALEK----------VPASMIVVGGGVIGLELGSVWARLG----------- 221 (491)
T ss_dssp BTTBCCCCCSSSEECHHHH----------TSCSS----------CCSEEEEECCSHHHHHHHHHHHHHT-----------
T ss_pred CCCcccccCCeeEEehhHh----------hhhhh----------cCCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 777642 11122232221 11122 2359999999999999999999887
Q ss_pred CCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECC---C--cEEeeeEEEEcCCC
Q 010845 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILND---G--TEVPYGLLVWSTGV 333 (499)
Q Consensus 265 ~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~---g--~~i~~D~vi~a~G~ 333 (499)
.+|+++++. ++++.+++++.+.+.+.+++.||+++++ +|.+++.+ .+.+++ | +++++|.||+|+|+
T Consensus 222 ---~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~ 298 (491)
T 3urh_A 222 ---AKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR 298 (491)
T ss_dssp ---CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred ---CEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence 899999987 7889999999999999999999999999 88888642 255542 4 68999999999999
Q ss_pred Ccch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 334 GPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 334 ~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
+|+. + ++..+++++++|+|.||+++|| +.|+|||+|||+. . |+++..|..||+.+|+||..
T Consensus 299 ~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~------~---~~~~~~A~~~g~~aa~~i~g 362 (491)
T 3urh_A 299 KPSTDGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIGDVVR------G---PMLAHKAEDEGVAVAEIIAG 362 (491)
T ss_dssp EECCTTSCHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSS------S---CCCHHHHHHHHHHHHHHHTT
T ss_pred ccCCCccCchhcCceECCCCCEeECCCCCC-CCCCEEEEEecCC------C---ccchhHHHHHHHHHHHHHcC
Confidence 9994 3 5677899999999999999999 9999999999994 2 68899999999999999863
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=302.86 Aligned_cols=317 Identities=19% Similarity=0.175 Sum_probs=223.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC--------cccc-------c---chh-----hhh---cc--CCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH--------MVFT-------P---LLA-----STC---VG--TLEF 113 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~--------~~~~-------~---~~~-----~~~---~g--~~~~ 113 (499)
.+||+|||||+||+.+|.++++.|.+|+|||+... +..+ | ++. ... .. .+..
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~ 121 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF 121 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence 37999999999999999999999999999997542 2111 1 000 000 00 0001
Q ss_pred Cccccchhhh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 114 RSVAEPIARI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 114 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
.....++..+ .....+..++.++.+...-++...-.|...... +....+.+|++|||||
T Consensus 122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~-------~~~~~i~a~~iiIATG 194 (542)
T 4b1b_A 122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDL-------SKEETVTGKYILIATG 194 (542)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--C-------CCEEEEEEEEEEECCC
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccC-------CceEEEeeeeEEeccC
Confidence 1111111111 011122367899999888887643333332211 1246899999999999
Q ss_pred CCccCCCCCCc-cccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHH
Q 010845 180 AEASTFGIHGV-KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (499)
Q Consensus 180 ~~~~~~~ipG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~ 258 (499)
++|..|+.++. .+..++ -++ .|.+..+|. +++|||||++|+|+|..++.++
T Consensus 195 s~P~~P~~~~~~~~~~~t---s~~----------~l~l~~lP~----------~lvIIGgG~IGlE~A~~~~~lG----- 246 (542)
T 4b1b_A 195 CRPHIPDDVEGAKELSIT---SDD----------IFSLKKDPG----------KTLVVGASYVALECSGFLNSLG----- 246 (542)
T ss_dssp EEECCCSSSBTHHHHCBC---HHH----------HTTCSSCCC----------SEEEECCSHHHHHHHHHHHHHT-----
T ss_pred CCCCCCCcccCCCccccC---chh----------hhccccCCc----------eEEEECCCHHHHHHHHHHHhcC-----
Confidence 99998855443 233222 221 255666775 9999999999999999999998
Q ss_pred HhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 259 QRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 259 ~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.+||++++.++||.+++++.+.+.+.|++.||+++++ .+.+++.. .+.+.+++++.+|.|++|+|+
T Consensus 247 ---------~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR 317 (542)
T 4b1b_A 247 ---------YDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR 317 (542)
T ss_dssp ---------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred ---------CeEEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc
Confidence 8999999888999999999999999999999999999 78777543 356778889999999999999
Q ss_pred Ccch-h--cccCCCCCCCCCc-eeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Q 010845 334 GPST-L--VKSLDLPKSPGGR-IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAG 409 (499)
Q Consensus 334 ~p~~-~--~~~~~l~~~~~G~-i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~ 409 (499)
+||. . ++..++.++.+|. |.||+++|| +.|||||+|||+. ..|++++.|.+||++++.||.....
T Consensus 318 ~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T-s~p~IyAiGDv~~--------~~p~La~~A~~eg~~aa~~i~g~~~-- 386 (542)
T 4b1b_A 318 KGDIDGLNLESLNMNVNKSNNKIIADHLSCT-NIPSIFAVGDVAE--------NVPELAPVAIKAGEILARRLFKDSD-- 386 (542)
T ss_dssp EESCGGGCGGGTTCCEETTTTEECCCTTSBC-SSTTEEECTTSBT--------TCCCCHHHHHHHHHHHHHHHHSCCC--
T ss_pred cCCccccCcccceeeecccCceEeccccccc-cCCCeEEeccccC--------CchhHHHHHHHHHHHHHHHHhcCCC--
Confidence 9994 2 4456777777666 588999999 9999999999993 2378999999999999999863211
Q ss_pred CCCCCCcCcCCCCCCceecccceEEEecCC
Q 010845 410 GGRANSAKDMELGDPFVYRHLGSMATIGRY 439 (499)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~ 439 (499)
+ ..++.. .|..--...+++++|..
T Consensus 387 --~---~~d~~~-iP~~vft~PeiA~VGlT 410 (542)
T 4b1b_A 387 --E---IMDYSY-IPTSIYTPIEYGACGYS 410 (542)
T ss_dssp --C---CCCCSS-CCEEECSSSCEEEEECC
T ss_pred --c---ccCCCC-CceEEeCCCCeEEEeCC
Confidence 1 011122 45444444577787753
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=289.78 Aligned_cols=285 Identities=18% Similarity=0.169 Sum_probs=204.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccc-cchhhhccccccCCCeEEEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA-EPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
.++|+|||||+||+++|..|++.|++|+|||+.. ...................+. ..+...........++.++.++|
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 94 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVEV 94 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCCE
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEeeE
Confidence 4789999999999999999999999999999953 211110000000000000000 11111111122335777777889
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHHHhhc
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
+.++.+.+.+.+.. ++ .++.||+||+|||+.+..|++||.+++ ........+ .
T Consensus 95 ~~i~~~~~~~~v~~--~~--------~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~-----~--------- 150 (319)
T 3cty_A 95 RSIKKTQGGFDIET--ND--------DTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCD-----G--------- 150 (319)
T ss_dssp EEEEEETTEEEEEE--SS--------SEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHH-----G---------
T ss_pred EEEEEeCCEEEEEE--CC--------CEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecc-----h---------
Confidence 99988777555543 12 378999999999999999999987432 111111100 0
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhC
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 297 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~ 297 (499)
.....++|+|||+|++|+|+|..|.+.+ .+|+++++.+.+. .++. +.+.+++.
T Consensus 151 --------~~~~~~~v~viG~G~~g~e~a~~l~~~g--------------~~V~~i~~~~~~~-~~~~----l~~~l~~~ 203 (319)
T 3cty_A 151 --------YLFKGKRVVTIGGGNSGAIAAISMSEYV--------------KNVTIIEYMPKYM-CENA----YVQEIKKR 203 (319)
T ss_dssp --------GGGBTSEEEEECCSHHHHHHHHHHTTTB--------------SEEEEECSSSSCC-SCHH----HHHHHHHT
T ss_pred --------hhcCCCeEEEECCCHHHHHHHHHHHhhC--------------CcEEEEEcCCccC-CCHH----HHHHHhcC
Confidence 0123369999999999999999998766 8999999874332 2333 45556689
Q ss_pred CCEEEeC-ceEEEeCC-----eEEEC---CCc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCC
Q 010845 298 GVRLVRG-IVKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQD 365 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~-----~v~~~---~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~ 365 (499)
||+++.+ ++.+++.+ ++.+. +|+ ++++|.||+|+|+.|+ +++..++++++++|+|.||+++|+ +.|+
T Consensus 204 gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~ 282 (319)
T 3cty_A 204 NIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRT-SVPG 282 (319)
T ss_dssp TCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBC-SSTT
T ss_pred CcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCcc-CCCC
Confidence 9999999 89888754 46665 565 6999999999999999 688888898888999999999998 9999
Q ss_pred eEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 366 Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|||+|||+.. .++++..|+.||+.+|.||...+.
T Consensus 283 vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 283 VYAAGDVTSG--------NFAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp EEECSTTBTT--------CCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeecccCc--------chhhHHHHHHHHHHHHHHHHHHhh
Confidence 9999999952 257899999999999999998875
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=287.73 Aligned_cols=285 Identities=16% Similarity=0.106 Sum_probs=202.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCcccccchhhhhccCCCC-Cccc-cchhhhccccccCCCeEEEEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFTPLLASTCVGTLEF-RSVA-EPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
++|+|||||+||+++|..|++.|+ +|+|||++.. ................ ..+. ..+...........++.++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ 80 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMP-GGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTA 80 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSST-TCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECSC
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCC-CcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 689999999999999999999999 9999999631 1110000000000000 0010 1111111112233567777788
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHHHhh
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
|+.++.+.+.+.+... ++ .++.||+||+|||+.+..|++||.+++ ..+.....+ . .
T Consensus 81 v~~i~~~~~~~~v~~~-~g--------~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~-----~-----~-- 139 (311)
T 2q0l_A 81 VQRVSKKDSHFVILAE-DG--------KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCD-----G-----F-- 139 (311)
T ss_dssp EEEEEEETTEEEEEET-TS--------CEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHH-----G-----G--
T ss_pred EEEEEEcCCEEEEEEc-CC--------CEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCC-----h-----h--
Confidence 9999887775554331 12 379999999999999999999997531 111111100 0 0
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHH-
Q 010845 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS- 295 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~- 295 (499)
....++|+|||+|++|+|+|..|.+.+ .+|+++++.+.++ .++. +.+.+.
T Consensus 140 ----------~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~----~~~~l~~ 190 (311)
T 2q0l_A 140 ----------FYKNKEVAVLGGGDTAVEEAIYLANIC--------------KKVYLIHRRDGFR-CAPI----TLEHAKN 190 (311)
T ss_dssp ----------GGTTSEEEEECCSHHHHHHHHHHHTTS--------------SEEEEECSSSSCC-SCHH----HHHHHHT
T ss_pred ----------hcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEeeCCccC-CCHH----HHHHHhh
Confidence 112369999999999999999998876 8999999874332 3443 334444
Q ss_pred hCCCEEEeC-ceEEEeCC-----eEEEC---CCc--EEeeeEEEEcCCCCcc-hhcccCC----CCCCCCCceeeCCCCC
Q 010845 296 KSGVRLVRG-IVKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLD----LPKSPGGRIGIDEWLR 359 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~-----~v~~~---~g~--~i~~D~vi~a~G~~p~-~~~~~~~----l~~~~~G~i~vd~~l~ 359 (499)
+.||+++.+ .+.+++.+ .++++ +|+ ++++|.||+|+|++|+ +++..++ ++++++|+|.||+++|
T Consensus 191 ~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~ 270 (311)
T 2q0l_A 191 NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMK 270 (311)
T ss_dssp CTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCB
T ss_pred CCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccc
Confidence 579999998 88888654 46775 675 7999999999999999 6777764 8888889999999999
Q ss_pred CCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 360 ~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
| +.|||||+|||+.. .|+++..|.+||+.+|.||...++
T Consensus 271 t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 309 (311)
T 2q0l_A 271 T-NVQGLFAAGDIRIF--------APKQVVCAASDGATAALSVISYLE 309 (311)
T ss_dssp C-SSTTEEECSTTBTT--------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCeEEcccccCc--------chHHHHHHHHhHHHHHHHHHHHHh
Confidence 8 99999999999952 267899999999999999998875
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=291.45 Aligned_cols=285 Identities=16% Similarity=0.093 Sum_probs=203.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEE-EcCCCCcccccchhhhhccCCCCC-c-cccchhhhccccccCCCeEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVC-VSPRNHMVFTPLLASTCVGTLEFR-S-VAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~l-ie~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
.+++|+|||||+|||++|..|++.|++|+| ||+. .+................. . ....+...........++.++.
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 81 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEM 81 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEEC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEE
Confidence 467999999999999999999999999999 9994 3222111110000000000 0 0011222222233345778888
Q ss_pred EEEEEEECCC--CEEE--EeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHH
Q 010845 138 SHCAGIDTDN--HVVH--CETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKL 210 (499)
Q Consensus 138 ~~v~~id~~~--~~v~--~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~ 210 (499)
++|+.+ .+. +.+. +.. + . ++.||+||+|||+.|..|.+||.+.. .+......+ .
T Consensus 82 ~~v~~i-~~~~~~~~~v~~~~---~-------~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~-----~-- 142 (315)
T 3r9u_A 82 VGVEQI-LKNSDGSFTIKLEG---G-------K-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCD-----G-- 142 (315)
T ss_dssp CCEEEE-EECTTSCEEEEETT---S-------C-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHH-----G--
T ss_pred EEEEEE-ecCCCCcEEEEEec---C-------C-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeeccc-----c--
Confidence 888888 544 4555 332 1 2 78999999999999999999997542 111111110 0
Q ss_pred HHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHH
Q 010845 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (499)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~ 290 (499)
.....++++|||+|++|+|+|..|.+.+ .+|+++++.+.++ .++. ..
T Consensus 143 ---------------~~~~~~~v~viG~g~~~~e~a~~l~~~g--------------~~v~~~~~~~~~~-~~~~---~~ 189 (315)
T 3r9u_A 143 ---------------FFYKNKEVAVLGGGDTALEEALYLANIC--------------SKIYLIHRRDEFR-AAPS---TV 189 (315)
T ss_dssp ---------------GGGTTSEEEEECCBHHHHHHHHHHHTTS--------------SEEEEECSSSSCB-SCHH---HH
T ss_pred ---------------cccCcCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEeCCCCC-CCHH---HH
Confidence 0122369999999999999999998876 8999999874332 2333 33
Q ss_pred HHHHHhCCCEEEeC-ceEEEeCCe-----EEEC--CCc--EEeeeEEEEcCCCCcch-hccc---CC-CCCCCCCceeeC
Q 010845 291 TTQLSKSGVRLVRG-IVKDVDSQK-----LILN--DGT--EVPYGLLVWSTGVGPST-LVKS---LD-LPKSPGGRIGID 355 (499)
Q Consensus 291 ~~~l~~~gV~v~~~-~v~~v~~~~-----v~~~--~g~--~i~~D~vi~a~G~~p~~-~~~~---~~-l~~~~~G~i~vd 355 (499)
.+.+++.||+++.+ .|.+++.+. +++. +|+ ++++|.||+|+|.+|+. ++.. ++ ++++++|+|.||
T Consensus 190 ~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd 269 (315)
T 3r9u_A 190 EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVD 269 (315)
T ss_dssp HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCC
T ss_pred HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeC
Confidence 45567899999988 888886543 6665 775 79999999999999995 4444 44 888889999999
Q ss_pred CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 356 ~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+++|| +.|||||+|||+.. .|+++..|+.||+.+|.+|.+.+.
T Consensus 270 ~~~~t-~~~~v~a~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 312 (315)
T 3r9u_A 270 LKMQT-SVAGLFAAGDLRKD--------APKQVICAAGDGAVAALSAMAYIE 312 (315)
T ss_dssp TTCBC-SSTTEEECGGGBTT--------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-CCCCEEEeecccCC--------chhhhhhHHhhHHHHHHHHHHHHH
Confidence 99999 99999999999842 278899999999999999999886
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=304.40 Aligned_cols=281 Identities=19% Similarity=0.267 Sum_probs=211.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----hh-----------h---hc--c----C--CCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS-----------T---CV--G----T--LEFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~-----------~---~~--g----~--~~~~~ 115 (499)
+++|+|||||++|+++|..|++.|++|+|||++ .+...... +. . .. + . .+...
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF-RYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAK 83 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHH
Confidence 479999999999999999999999999999994 32221000 00 0 00 0 0 00000
Q ss_pred ccc-------chhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc-CCCC
Q 010845 116 VAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS-TFGI 187 (499)
Q Consensus 116 ~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~-~~~i 187 (499)
+.. .+......+....++.++.+++..++ .+.+.+.. + ...+.||+||+|||+.|. .|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~v~~~~--~--------~~~~~~d~lviAtG~~p~~~p~i 151 (463)
T 4dna_A 84 LVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAG--PNTVKLLA--S--------GKTVTAERIVIAVGGHPSPHDAL 151 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETT--T--------TEEEEEEEEEECCCEEECCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEec--C--------CeEEEeCEEEEecCCCcccCCCC
Confidence 000 01111111122247788888777765 45666621 1 147999999999999999 8999
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+ .. .+..+. +..... .++++|||+|++|+|+|..+..++
T Consensus 152 ~G~~-~~---~~~~~~----------~~~~~~----------~~~v~ViGgG~~g~e~A~~l~~~g-------------- 193 (463)
T 4dna_A 152 PGHE-LC---ITSNEA----------FDLPAL----------PESILIAGGGYIAVEFANIFHGLG-------------- 193 (463)
T ss_dssp TTGG-GC---BCHHHH----------TTCSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCcc-cc---ccHHHH----------hhhhcC----------CCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9974 22 222222 112222 359999999999999999999887
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEE-ECCCcEEeeeEEEEcCCCCcch-h
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLI-LNDGTEVPYGLLVWSTGVGPST-L 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~-~~~g~~i~~D~vi~a~G~~p~~-~ 338 (499)
.+|+++++. ++++.+++++.+.+.+.+++.||+++++ .|.+++.+ .|. +++|+ +++|.||+|+|++|+. +
T Consensus 194 ~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~ 272 (463)
T 4dna_A 194 VKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNG 272 (463)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTT
T ss_pred CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCC
Confidence 899999987 6889999999999999999999999998 89988753 466 77887 9999999999999995 3
Q ss_pred --cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 339 --VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 339 --~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
++.++++++++|+|.||+++|| +.|||||+|||+. .+++++.|..||+.+|+||..
T Consensus 273 l~l~~~g~~~~~~G~i~vd~~~~t-~~~~iya~GD~~~---------~~~~~~~A~~~g~~aa~~i~g 330 (463)
T 4dna_A 273 LGLEAAGVRTNELGAIIVDAFSRT-STPGIYALGDVTD---------RVQLTPVAIHEAMCFIETEYK 330 (463)
T ss_dssp SSTGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSGGGS---------SCCCHHHHHHHHHHHHHHHHS
T ss_pred CCccccCceECCCCCEeECcCCCC-CCCCEEEEEecCC---------CCCChHHHHHHHHHHHHHHcC
Confidence 6778999999999999999998 9999999999995 278899999999999999863
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=288.37 Aligned_cols=284 Identities=12% Similarity=0.149 Sum_probs=197.9
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccc-cch-hhhccccccCCCeEEEE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA-EPI-ARIQPAISREPGSYFFL 137 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 137 (499)
|+++||+||||||||++||.+|++.|++|+|||++..-. . +.....+......+. ..+ ......+.+...+.+..
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRN-R--VTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYE 80 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGG-G--GSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEE
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC-e--eeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEe
Confidence 567899999999999999999999999999999874311 0 000001111111111 111 11122234445677777
Q ss_pred EEEEEEECCC-CEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC---ccCCCHHHHHHHHHHHHHH
Q 010845 138 SHCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA---TFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 138 ~~v~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~---~~~~~~~~~~~~~~~~~~~ 213 (499)
.++..++... ..+++...+ +.++.||+||||||++|+.|++||.++.. .......+.
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~---------g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~---------- 141 (304)
T 4fk1_A 81 KTVVMITKQSTGLFEIVTKD---------HTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDG---------- 141 (304)
T ss_dssp CCEEEEEECTTSCEEEEETT---------CCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHS----------
T ss_pred eEEEEeeecCCCcEEEEECC---------CCEEEeCEEEEccCCccccccccCccccccceeeeccccch----------
Confidence 7777765433 233333211 24899999999999999999999975321 111111000
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChH-HHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPT-GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~-gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~ 292 (499)
+ ..+.++++|||||.. ++|+|..+...+ .+|++++++..+ .+.+.+
T Consensus 142 ~------------~~~~~~~~VIggG~~~~~e~a~~~~~~~--------------~~v~i~~~~~~~-------~~~~~~ 188 (304)
T 4fk1_A 142 W------------ELKDQPLIIISENEDHTLHMTKLVYNWS--------------TDLVIATNGNEL-------SQTIMD 188 (304)
T ss_dssp G------------GGTTSCEEEECCSHHHHHHHHHHHTTTC--------------SCEEEECSSCCC-------CHHHHH
T ss_pred h------------HhcCCceeeecCCCchhhhHHHHHHhCC--------------ceEEEEeccccc-------hhhhhh
Confidence 0 012347888887765 577777776655 789999876422 234566
Q ss_pred HHHhCCCEEEeCceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCe
Q 010845 293 QLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (499)
Q Consensus 293 ~l~~~gV~v~~~~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~I 366 (499)
.|++.|++++.+.+..+..+ .|.+++|+++++|.+|+++|..|+ +++++++++++++|+|.||+++|| +.|||
T Consensus 189 ~l~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~T-s~p~I 267 (304)
T 4fk1_A 189 ELSNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRT-SEKNI 267 (304)
T ss_dssp HHHTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBC-SSTTE
T ss_pred hhhccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCcc-CCCCE
Confidence 78889999998888777653 588999999999988888776665 788899999999999999999999 99999
Q ss_pred EEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 367 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 367 fa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
||+|||+.. .+.++..|+.||+.||.+|.+.|.
T Consensus 268 yA~GDv~~~--------~~~~~~~A~~~G~~AA~~i~~~L~ 300 (304)
T 4fk1_A 268 YLAGETTTQ--------GPSSLIIAASQGNKAAIAINSDIT 300 (304)
T ss_dssp EECSHHHHT--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCC--------cchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999952 256788899999999999999886
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=302.49 Aligned_cols=287 Identities=20% Similarity=0.254 Sum_probs=209.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhh---------------------ccCC-----CCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---------------------VGTL-----EFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~---------------------~g~~-----~~~~ 115 (499)
++||+|||||+||+++|..|++.|++|+|||+++.+.....+.+.+ .... ....
T Consensus 3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~ 82 (476)
T 3lad_A 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGE 82 (476)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 5899999999999999999999999999999986221111000000 0000 0000
Q ss_pred cccc--------------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCC
Q 010845 116 VAEP--------------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (499)
Q Consensus 116 ~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~ 181 (499)
...+ +......+....++.++.+++..++... +.+...+ ++...+.||+||||||+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~--~~v~~~~-------g~~~~~~~d~lvlAtG~~ 153 (476)
T 3lad_A 83 VAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKK--VEVTAAD-------GSSQVLDTENVILASGSK 153 (476)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTC--EEEECTT-------SCEEEECCSCEEECCCEE
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCE--EEEEcCC-------CceEEEEcCEEEEcCCCC
Confidence 0000 1000111222357888888888776544 4443211 113579999999999999
Q ss_pred ccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHh
Q 010845 182 ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (499)
Q Consensus 182 ~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~ 260 (499)
|..|+.++.+. ..+ +..+. +.... ..++++|||+|++|+|+|..+...+
T Consensus 154 p~~~~~~~~~~~~v~---~~~~~----------~~~~~----------~~~~v~ViGgG~~g~e~A~~l~~~g------- 203 (476)
T 3lad_A 154 PVEIPPAPVDQDVIV---DSTGA----------LDFQN----------VPGKLGVIGAGVIGLELGSVWARLG------- 203 (476)
T ss_dssp ECCCTTSCCCSSSEE---EHHHH----------TSCSS----------CCSEEEEECCSHHHHHHHHHHHHTT-------
T ss_pred CCCCCCCCCCcccEE---echhh----------hcccc----------CCCeEEEECCCHHHHHHHHHHHHcC-------
Confidence 88665555322 222 11111 11122 2359999999999999999999887
Q ss_pred cCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCC---cEEeeeEEEEcC
Q 010845 261 YSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDG---TEVPYGLLVWST 331 (499)
Q Consensus 261 ~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g---~~i~~D~vi~a~ 331 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .+.+.++ +++++|.||+|+
T Consensus 204 -------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~ 276 (476)
T 3lad_A 204 -------AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAV 276 (476)
T ss_dssp -------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECS
T ss_pred -------CcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEee
Confidence 899999987 7899999999999999999999999999 89988743 3566654 689999999999
Q ss_pred CCCcch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 332 GVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 332 G~~p~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|++|+. .++..+++++++|+|.||+++|| +.|||||+|||+. . |.++..|..||+.+|+||..
T Consensus 277 G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~------~---~~~~~~A~~~g~~aa~~i~g 342 (476)
T 3lad_A 277 GRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGDVVR------G---AMLAHKASEEGVVVAERIAG 342 (476)
T ss_dssp CEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGGGSS------S---CCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCccccCccccCCCCEeeCCCccc-CCCCEEEEEccCC------C---cccHHHHHHHHHHHHHHhcC
Confidence 999984 26778899999999999999998 9999999999994 1 67899999999999999864
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=303.72 Aligned_cols=282 Identities=22% Similarity=0.295 Sum_probs=212.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----hh---------------h-hccCC------CCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS---------------T-CVGTL------EFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~---------------~-~~g~~------~~~~ 115 (499)
++||+|||||+||+++|..|++.|++|+|||++ .+...... +. . ..|.. +...
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 104 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEK 104 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence 579999999999999999999999999999994 32221100 00 0 00100 0000
Q ss_pred c-------ccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc-CCCC
Q 010845 116 V-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS-TFGI 187 (499)
Q Consensus 116 ~-------~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~-~~~i 187 (499)
+ ...+...........++.++.+++..++. +.+.+.. + ...+.||+||+|||+.|. .|.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~v~~--~--------~~~~~~d~lviAtG~~p~~~p~i 172 (484)
T 3o0h_A 105 LVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE--HTLELSV--T--------GERISAEKILIATGAKIVSNSAI 172 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEETT--T--------CCEEEEEEEEECCCEEECCC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEec--C--------CeEEEeCEEEEccCCCcccCCCC
Confidence 0 00111111112233578888888888874 4666641 1 147999999999999999 8999
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+ ..++..+. +..... .++++|||+|++|+|+|..+.+.+
T Consensus 173 ~G~~-~~~~~~~~-------------~~~~~~----------~~~v~ViGgG~~g~e~A~~l~~~g-------------- 214 (484)
T 3o0h_A 173 KGSD-LCLTSNEI-------------FDLEKL----------PKSIVIVGGGYIGVEFANIFHGLG-------------- 214 (484)
T ss_dssp BTGG-GSBCTTTG-------------GGCSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCcc-ccccHHHH-------------HhHHhc----------CCcEEEECcCHHHHHHHHHHHHcC--------------
Confidence 9974 33332222 111122 359999999999999999999877
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch-h--
Q 010845 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L-- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~-~-- 338 (499)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|.+++.+ .+.+++|+++++|.||+|+|++|+. +
T Consensus 215 ~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~ 294 (484)
T 3o0h_A 215 VKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLG 294 (484)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCC
T ss_pred CeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCC
Confidence 899999987 6889999999999999999999999998 89998764 5788899999999999999999995 3
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
++..+++++++|+|.||+++|| +.|+|||+|||+. .+++++.|..||+.+|+||..
T Consensus 295 l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~---------~~~~~~~A~~~g~~aa~~i~~ 350 (484)
T 3o0h_A 295 LERAGVKVNEFGAVVVDEKMTT-NVSHIWAVGDVTG---------HIQLTPVAIHDAMCFVKNAFE 350 (484)
T ss_dssp HHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGT---------SCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhcCceECCCCCEeECCCCCC-CCCCEEEEEecCC---------CCcCHHHHHHHHHHHHHHHcC
Confidence 5677899999999999999998 9999999999994 278899999999999999874
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=312.02 Aligned_cols=343 Identities=16% Similarity=0.144 Sum_probs=222.1
Q ss_pred ccccccccccc--ccccCCCCCCC-CCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHH
Q 010845 3 LFKHLLRNPTA--KSYSYSSPSII-MPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMK 79 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~ 79 (499)
|+.-++|+|.+ +|+..|.+... ..| ..+..+.+|..+..... ...+...+ .....++|+|||||+|||++|.
T Consensus 65 ~p~~~grvCp~~~~Ce~~C~~~~~~~~~-v~I~~le~~~~~~~~~~---~~~~~~~~-~~~~~~~V~IIGgGpAGl~aA~ 139 (456)
T 2vdc_G 65 FPEICGRICPQDRLCEGNCVIEQSTHGA-VTIGSVEKYINDTAWDQ---GWVKPRTP-SRELGLSVGVIGAGPAGLAAAE 139 (456)
T ss_dssp CHHHHHHHCCGGGSGGGGCGGGGSSSCS-CCHHHHHHHHHHHHHHH---TCCCCCCS-CSSCCCCEEEECCSHHHHHHHH
T ss_pred CCccccccCCCCcchHHhcccCCCCCCC-ccHHHHHHHHHHHHHHc---CCCCCCCC-cCCCCCEEEEECCCHHHHHHHH
Confidence 45567899999 99999999886 444 56665666543211000 01111111 1134579999999999999999
Q ss_pred hccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCcc
Q 010845 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (499)
Q Consensus 80 ~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 159 (499)
.|++.|++|+|||+.+.+..... +.. .+...+.++.....+. +. ..++.++.++.+. +.+++++
T Consensus 140 ~L~~~G~~V~v~e~~~~~GG~l~-~gi-p~~~~~~~~~~~~~~~---l~-~~gv~~~~~~~v~-----~~v~~~~----- 203 (456)
T 2vdc_G 140 ELRAKGYEVHVYDRYDRMGGLLV-YGI-PGFKLEKSVVERRVKL---LA-DAGVIYHPNFEVG-----RDASLPE----- 203 (456)
T ss_dssp HHHHHTCCEEEECSSSSCSTHHH-HTS-CTTTSCHHHHHHHHHH---HH-HTTCEEETTCCBT-----TTBCHHH-----
T ss_pred HHHHCCCeEEEEeccCCCCCeee-ecC-CCccCCHHHHHHHHHH---HH-HCCcEEEeCCEec-----cEEEhhH-----
Confidence 99999999999999876543211 111 0110111111111111 22 2466665543221 1222221
Q ss_pred ccCCCceeeeeCCeEEEcCCCC-ccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCH-HHHhccccEEEe
Q 010845 160 RTLEPWKFKISYDKLVIALGAE-ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISE-EEKSRLLHCVVV 236 (499)
Q Consensus 160 ~~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~vvVv 236 (499)
..+.||+||||||+. ++.+++||.+. .++. ..+...-.... .+... .+..+. ......++|+||
T Consensus 204 -------~~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~---a~~~l~~~~~~--~~~~~-~~~~~~g~~~~~gk~VvVI 270 (456)
T 2vdc_G 204 -------LRRKHVAVLVATGVYKARDIKAPGSGLGNIVA---ALDYLTTSNKV--SLGDT-VEAYENGSLNAAGKHVVVL 270 (456)
T ss_dssp -------HHSSCSEEEECCCCCEECCTTCSCCTTTTEEE---HHHHHHHHHHH--HCTTT-CSSCCTTCSCCCCSEEEEE
T ss_pred -------hHhhCCEEEEecCCCCCCCCCCCCCcCCCcEE---HHHHHHHhhhh--hcccc-cccccccccccCCCEEEEE
Confidence 246799999999996 67788998742 2221 11111111110 01100 000000 011345799999
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-Cc-CCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCe
Q 010845 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-LSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK 313 (499)
Q Consensus 237 GgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~-l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~ 313 (499)
|||++|+|+|..+.+.+. .+|+++++. .. +|..+.+ .+.+++.||+++.+ .+.++.+++
T Consensus 271 GgG~~a~d~A~~~~r~Ga-------------~~Vtiv~r~~~~~~p~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~g 332 (456)
T 2vdc_G 271 GGGDTAMDCVRTAIRQGA-------------TSVKCLYRRDRKNMPGSQRE-----VAHAEEEGVEFIWQAAPEGFTGDT 332 (456)
T ss_dssp CSSHHHHHHHHHHHHTTC-------------SEEEEECSSCSTTCSSCHHH-----HHHHHHTTCEEECCSSSCCEEEEE
T ss_pred CCChhHHHHHHHHHHcCC-------------CEEEEEEeCCccCCCCCHHH-----HHHHHHCCCEEEeCCCceEEeCCC
Confidence 999999999999887761 369999987 33 5655443 34577789999988 666664331
Q ss_pred ----EEEC------------------CC--cEEeeeEEEEcCCCCcch---hcccCCCCCCCCCceeeCCC-CCCCCCCC
Q 010845 314 ----LILN------------------DG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEW-LRVPSVQD 365 (499)
Q Consensus 314 ----v~~~------------------~g--~~i~~D~vi~a~G~~p~~---~~~~~~l~~~~~G~i~vd~~-l~~~~~~~ 365 (499)
|++. +| .++++|+||+|+|+.|++ ++..++++++++|+|.||++ +|| +.|+
T Consensus 333 ~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~T-s~~~ 411 (456)
T 2vdc_G 333 VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMT-NMDG 411 (456)
T ss_dssp EEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBC-SSTT
T ss_pred cEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcC-CCCC
Confidence 2221 23 479999999999999974 67888999999999999997 998 9999
Q ss_pred eEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 366 Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|||+|||+. + +.++..|++||+.+|++|...+.
T Consensus 412 VfA~GD~~~-----g----~~~v~~A~~~G~~aA~~i~~~L~ 444 (456)
T 2vdc_G 412 VFAAGDIVR-----G----ASLVVWAIRDGRDAAEGIHAYAK 444 (456)
T ss_dssp EEECGGGGS-----S----CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccC-----C----chHHHHHHHHHHHHHHHHHHHhh
Confidence 999999985 2 67899999999999999999886
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=291.01 Aligned_cols=286 Identities=13% Similarity=0.124 Sum_probs=207.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc--hhhhh-ccCCCCCcc-ccchhhhccccccCCCeEEE-
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL--LASTC-VGTLEFRSV-AEPIARIQPAISREPGSYFF- 136 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~--~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 136 (499)
+++|+|||||+||+++|..|++.|++|+|||+++.+..... .+... ......... ...+...........++.++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL 86 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence 47999999999999999999999999999999986542221 00000 000111100 11122221112233466766
Q ss_pred EEEEEEEECCCC-EEEEeeecCccccCCCceeeeeCCeEEEcCCC---CccCCCCCCcccc---CccCCCHHHHHHHHHH
Q 010845 137 LSHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHGVKEN---ATFLREVHHAQEIRRK 209 (499)
Q Consensus 137 ~~~v~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~---~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~ 209 (499)
..+|+.++.+.+ .+.+... + .++.||+||+|||+ .|..|++||.+.. .... .+.+.
T Consensus 87 ~~~v~~i~~~~~~~~~v~~~-~---------g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~------ 149 (332)
T 3lzw_A 87 EQAVESVEKQADGVFKLVTN-E---------ETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDL------ 149 (332)
T ss_dssp SCCEEEEEECTTSCEEEEES-S---------EEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCG------
T ss_pred cCEEEEEEECCCCcEEEEEC-C---------CEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCH------
Confidence 479999998876 3333321 1 25999999999999 8888899997541 1111 11111
Q ss_pred HHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHH
Q 010845 210 LLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 289 (499)
Q Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~ 289 (499)
...+.++++|||+|.+|+|+|..|.+.+ .+|+++++...+...++
T Consensus 150 ----------------~~~~~~~v~vvG~g~~~~e~a~~l~~~~--------------~~v~~~~~~~~~~~~~~----- 194 (332)
T 3lzw_A 150 ----------------QKFAGRRVAILGGGDSAVDWALMLEPIA--------------KEVSIIHRRDKFRAHEH----- 194 (332)
T ss_dssp ----------------GGGBTCEEEEECSSHHHHHHHHHHTTTB--------------SEEEEECSSSSCSSCHH-----
T ss_pred ----------------HHcCCCEEEEECCCHhHHHHHHHHHhhC--------------CeEEEEEecCcCCccHH-----
Confidence 1123469999999999999999998765 89999998743333322
Q ss_pred HHHHHHhCCCEEEeC-ceEEEeCCe----EEECC-----CcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCC
Q 010845 290 ATTQLSKSGVRLVRG-IVKDVDSQK----LILND-----GTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWL 358 (499)
Q Consensus 290 ~~~~l~~~gV~v~~~-~v~~v~~~~----v~~~~-----g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l 358 (499)
..+.|++.||+++.+ .|.+++.+. +++++ ++++++|.||+|+|+.|+ ++++.++++. ++|+|.||+++
T Consensus 195 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~~~ 273 (332)
T 3lzw_A 195 SVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKSTM 273 (332)
T ss_dssp HHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCTTS
T ss_pred HHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCCCC
Confidence 234578899999998 899998753 77765 467999999999999998 6888888887 67999999999
Q ss_pred CCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 359 ~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|+ +.|||||+|||+.++ ..++++..|..||+.+|.+|...+.
T Consensus 274 ~t-~~~~vya~GD~~~~~------~~~~~~~~A~~~g~~aa~~i~~~l~ 315 (332)
T 3lzw_A 274 ET-NIEGFFAAGDICTYE------GKVNLIASGFGEAPTAVNNAKAYMD 315 (332)
T ss_dssp BC-SSTTEEECGGGEECT------TCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ce-ecCCEEEccceecCC------CCcceEeeehhhHHHHHHHHHHhhC
Confidence 99 999999999999642 1388899999999999999999886
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=300.28 Aligned_cols=277 Identities=24% Similarity=0.319 Sum_probs=206.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hh-----------h----hh----ccCCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LA-----------S----TC----VGTLEFRSVAE 118 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~-----------~----~~----~g~~~~~~~~~ 118 (499)
+++|+|||||+||+++|..|++.|++|+|||++ .+..... .+ . .. .|. .......
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~-~~~~~~~ 82 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGI-SVASPRL 82 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCc-ccCCCcc
Confidence 479999999999999999999999999999994 3321100 00 0 00 111 1111111
Q ss_pred chhhhc--------------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 119 PIARIQ--------------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 119 ~~~~~~--------------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
++..+. ..+....+++++.+++..++ .+.|.+++ .++.||+||||||+.|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v~~------------~~~~~d~lviATGs~p~~ 148 (458)
T 1lvl_A 83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD--GKQVEVDG------------QRIQCEHLLLATGSSSVE 148 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE--TTEEEETT------------EEEECSEEEECCCEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc--CCEEEEee------------EEEEeCEEEEeCCCCCCC
Confidence 111110 11223367888887776665 46676643 379999999999999876
Q ss_pred CC-CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCC
Q 010845 185 FG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (499)
Q Consensus 185 ~~-ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~ 263 (499)
|+ +| .+. .+.+..++. .... ..++++|||||++|+|+|..|++.+
T Consensus 149 ~~~~~-~~~---~v~~~~~~~----------~~~~----------~~~~vvViGgG~~g~e~A~~l~~~g---------- 194 (458)
T 1lvl_A 149 LPMLP-LGG---PVISSTEAL----------APKA----------LPQHLVVVGGGYIGLELGIAYRKLG---------- 194 (458)
T ss_dssp BTTBC-CBT---TEECHHHHT----------CCSS----------CCSEEEEECCSHHHHHHHHHHHHHT----------
T ss_pred CCCCC-ccC---cEecHHHHh----------hhhc----------cCCeEEEECcCHHHHHHHHHHHHCC----------
Confidence 65 55 222 122333221 1111 2359999999999999999999887
Q ss_pred CCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEEC--CC--cEEeeeEEEEcCCCCcch
Q 010845 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILN--DG--TEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 264 ~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~--~g--~~i~~D~vi~a~G~~p~~ 337 (499)
.+|+++++. ++++.+++++.+.+.+.+++.||+++++ +|.+++.+.+.+. +| +++++|.||+|+|.+|+.
T Consensus 195 ----~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~ 270 (458)
T 1lvl_A 195 ----AQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRT 270 (458)
T ss_dssp ----CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred ----CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence 899999987 7889999999999999999999999999 8999986545554 56 689999999999999994
Q ss_pred -h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 338 -L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 338 -~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+ ++.++++++++ +|.||+++|| +.|+|||+|||+.. +++++.|.+||+.+|.||.
T Consensus 271 ~~l~~~~~g~~~~~~-~i~vd~~~~t-~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~ 328 (458)
T 1lvl_A 271 KGFNLECLDLKMNGA-AIAIDERCQT-SMHNVWAIGDVAGE---------PMLAHRAMAQGEMVAEIIA 328 (458)
T ss_dssp SSSSGGGSCCCEETT-EECCCTTCBC-SSTTEEECGGGGCS---------SCCHHHHHHHHHHHHHHHT
T ss_pred CCCCcHhcCCcccCC-EEeECCCCcC-CCCCEEEeeccCCC---------cccHHHHHHHHHHHHHHhc
Confidence 3 57778888777 8999999998 89999999999952 6788999999999999986
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=287.35 Aligned_cols=289 Identities=18% Similarity=0.167 Sum_probs=206.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCC-Cccc-cchhhhccccccCCCeEEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEF-RSVA-EPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
+++|+|||||+||+++|..|++.|++|+|||+.. ................. ..+. ..+...........++.++.++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH 83 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence 4789999999999999999999999999999752 11110000000000000 0000 1111111112223567888888
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC-ccCCCHHHHHHHHHHHHHHHhhcC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
|+.++.+.+.+++ . .++ ..+.||+||+|||+.+..|++||.++.. ..+..... ....
T Consensus 84 v~~i~~~~~~~~v-~-~~~--------~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~---~~~~--------- 141 (320)
T 1trb_A 84 INKVDLQNRPFRL-N-GDN--------GEYTCDALIIATGASARYLGLPSEEAFKGRGVSACAT---SDGF--------- 141 (320)
T ss_dssp EEEEECSSSSEEE-E-ESS--------CEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHH---HHGG---------
T ss_pred eeEEEecCCEEEE-E-eCC--------CEEEcCEEEECCCCCcCCCCCCChHHhCCceeEeccc---CCcc---------
Confidence 9999988776665 2 112 3789999999999999888888864321 01111110 0000
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCC
Q 010845 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~g 298 (499)
....++|+|||+|++|+|+|..|.+.+ .+|+++++...+. .++.+.+.+.+.+++.|
T Consensus 142 --------~~~~~~v~ViG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~g 198 (320)
T 1trb_A 142 --------FYRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVENGN 198 (320)
T ss_dssp --------GGTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCC-CCHHHHHHHHHHHHTSS
T ss_pred --------ccCCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeCCccc-cCHHHHHHHHHhcccCC
Confidence 022359999999999999999998776 8999999874332 36778888889999999
Q ss_pred CEEEeC-ceEEEeCCe-----EEECC----C--cEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCC-----CC
Q 010845 299 VRLVRG-IVKDVDSQK-----LILND----G--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWL-----RV 360 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~-----v~~~~----g--~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l-----~~ 360 (499)
|+++++ +|.+++.+. |++++ | +++++|.||+|+|++|+. ++. .+++.+ +|+|.||+++ ++
T Consensus 199 v~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~-~G~i~vd~~~~~~~~~t 276 (320)
T 1trb_A 199 IILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELE-NGYIKVQSGIHGNATQT 276 (320)
T ss_dssp EEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEE-TTEECCCCSSSSCTTBC
T ss_pred eEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-cccccc-CceEEECCCcccccccC
Confidence 999999 899987543 77764 4 579999999999999995 544 567778 8999999997 56
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.|+|||+|||+.. .++.+..|..||+.+|.+|...+.
T Consensus 277 -~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 314 (320)
T 1trb_A 277 -SIPGVFAAGDVMDH--------IYRQAITSAGTGCMAALDAERYLD 314 (320)
T ss_dssp -SSTTEEECGGGGCS--------SSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCEEEcccccCC--------cchhhhhhhccHHHHHHHHHHHHH
Confidence 89999999999952 256789999999999999999886
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=304.27 Aligned_cols=283 Identities=21% Similarity=0.235 Sum_probs=210.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----hh------------hh---ccCCCCCccccchhhh
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS------------TC---VGTLEFRSVAEPIARI 123 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~------------~~---~g~~~~~~~~~~~~~~ 123 (499)
++|+|||||+||+++|..|++.|++|+|||+++.+...... +. .. .|. .......++..+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 80 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGA-KVKGVELDLPAL 80 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTE-EECCEEECHHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCc-ccCCCccCHHHH
Confidence 68999999999999999999999999999998765322110 00 00 000 000000111110
Q ss_pred --------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCC
Q 010845 124 --------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (499)
Q Consensus 124 --------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG 189 (499)
...+....+++++.+++..++ .+.+.+.. ++ .++.||+||+|||+.|..|+++|
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~--~g--------~~~~~d~lviAtG~~p~~~~~~g 148 (455)
T 2yqu_A 81 MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLS--ERKVLVEE--TG--------EELEARYILIATGSAPLIPPWAQ 148 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETT--TC--------CEEEEEEEEECCCEEECCCTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCeEEEee--CC--------EEEEecEEEECCCCCCCCCCCCC
Confidence 011122246788887766554 45666543 12 37999999999999999888888
Q ss_pred ccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE
Q 010845 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (499)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~ 269 (499)
.+... +.+..++. .... ..++|+|||||++|+|+|..|.+.+ .+
T Consensus 149 ~~~~~--v~~~~~~~----------~~~~----------~~~~vvIiGgG~~g~e~A~~l~~~g--------------~~ 192 (455)
T 2yqu_A 149 VDYER--VVTSTEAL----------SFPE----------VPKRLIVVGGGVIGLELGVVWHRLG--------------AE 192 (455)
T ss_dssp CCSSS--EECHHHHT----------CCSS----------CCSEEEEECCSHHHHHHHHHHHHTT--------------CE
T ss_pred CCcCc--EechHHhh----------cccc----------CCCeEEEECCCHHHHHHHHHHHHcC--------------CE
Confidence 64311 22222221 1111 2359999999999999999999877 89
Q ss_pred EEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcCCCCcch-h--cc
Q 010845 270 VTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPST-L--VK 340 (499)
Q Consensus 270 Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~-~--~~ 340 (499)
|+++++. .++|.+++++.+.+.+.+++.||+++++ +|.+++. +. +.+++|+++++|.||+|+|.+|+. + ++
T Consensus 193 V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~ 272 (455)
T 2yqu_A 193 VIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLE 272 (455)
T ss_dssp EEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGG
T ss_pred EEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChh
Confidence 9999987 6889999999999999999999999999 8998864 33 455688899999999999999984 4 56
Q ss_pred cCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 341 ~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
.++++++++|+|.||+++|+ +.|+|||+|||+.. +++++.|.+||+.+|+||..
T Consensus 273 ~~g~~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~ 326 (455)
T 2yqu_A 273 NAGLSTDERGRIPVDEHLRT-RVPHIYAIGDVVRG---------PMLAHKASEEGIAAVEHMVR 326 (455)
T ss_dssp GGTCCCCTTSCCCCCTTSBC-SSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCccCCCCcEeECCCccc-CCCCEEEEecCCCC---------ccCHHHHHHhHHHHHHHHcC
Confidence 77888888899999999998 89999999999951 67889999999999999974
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=285.02 Aligned_cols=282 Identities=16% Similarity=0.144 Sum_probs=185.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccc-cch-hhhccccccCCCeEEEE-E
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA-EPI-ARIQPAISREPGSYFFL-S 138 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~-~ 138 (499)
.+||+||||||||++||.+|++.|++|+|||++.. ..+-.......+.+....+. ..+ ........+ ....+.. .
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~-gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIP-GGQMANTEEVENFPGFEMITGPDLSTKMFEHAKK-FGAVYQYGD 83 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-TGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCeeecccccCCcCCccccchHHHHHHHHHHHhh-cccccccee
Confidence 48999999999999999999999999999998632 11110000000111111110 011 111111222 2233333 2
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC---ccCCCHHHHHHHHHHHHHHHh
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA---TFLREVHHAQEIRRKLLLNLM 215 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~---~~~~~~~~~~~~~~~~~~~~~ 215 (499)
.+...+.....+...+ ..++.||+||||||++|+.|++||.++.. .......+..
T Consensus 84 ~~~~~~~~~~~~~~~~-----------~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~----------- 141 (312)
T 4gcm_A 84 IKSVEDKGEYKVINFG-----------NKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA----------- 141 (312)
T ss_dssp CCEEEECSSCEEEECS-----------SCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG-----------
T ss_pred eeeeeeeecceeeccC-----------CeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCcc-----------
Confidence 3344444444443322 24899999999999999999999985421 1111111100
Q ss_pred hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHH
Q 010845 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL 294 (499)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l 294 (499)
..+.++|+|||||++|+|+|..|++++ .+||++++. ++++.. ....+.+
T Consensus 142 -----------~~~~k~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~~~~~-----~~~~~~~ 191 (312)
T 4gcm_A 142 -----------FFKNKRLFVIGGGDSAVEEGTFLTKFA--------------DKVTIVHRRDELRAQR-----ILQDRAF 191 (312)
T ss_dssp -----------GGTTCEEEEECCSHHHHHHHHHHTTTC--------------SEEEEECSSSSCCSCH-----HHHHHHH
T ss_pred -----------ccCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEecccccCcch-----hHHHHHH
Confidence 112369999999999999999998877 899999987 555431 1223456
Q ss_pred HhCCCEEEeC-ceEEEe--CC---e--EE-E--CCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCC
Q 010845 295 SKSGVRLVRG-IVKDVD--SQ---K--LI-L--NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPS 362 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~--~~---~--v~-~--~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~ 362 (499)
++.++..... .+..+. +. . .. . .++..+++|.|++++|..|+ .+...+++. +++|+|.||++||| +
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~-~~~G~I~vd~~~~T-s 269 (312)
T 4gcm_A 192 KNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGIT-NDVGYIVTKDDMTT-S 269 (312)
T ss_dssp HCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCB-CTTSCBCCCTTSBC-S
T ss_pred HhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhccee-cCCCeEeeCCCCcc-C
Confidence 6778877765 333222 11 1 11 1 23357999999999999999 466666764 56799999999999 9
Q ss_pred CCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 363 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 363 ~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|||||+|||+.. .++++..|+.||+.||.||.++++
T Consensus 270 ~pgIyA~GDv~~~--------~~~~~~~A~~~G~~AA~~i~~~L~ 306 (312)
T 4gcm_A 270 VPGIFAAGDVRDK--------GLRQIVTATGDGSIAAQSAAEYIE 306 (312)
T ss_dssp STTEEECSTTBSC--------SCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCC--------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999941 257889999999999999999886
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=305.31 Aligned_cols=288 Identities=19% Similarity=0.261 Sum_probs=207.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC-CC-------cccc----cchhhh----------------hccCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR-NH-------MVFT----PLLAST----------------CVGTLE 112 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~-~~-------~~~~----~~~~~~----------------~~g~~~ 112 (499)
.+++|+|||||+||++||..|++.|++|+|||+. +. +... ...+.. ..|...
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~ 185 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSL 185 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCccc
Confidence 4579999999999999999999999999999973 21 1110 000000 001100
Q ss_pred CCc-cccc-------hhhhc--------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEE
Q 010845 113 FRS-VAEP-------IARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (499)
Q Consensus 113 ~~~-~~~~-------~~~~~--------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LVi 176 (499)
... ...+ ++... ..+ ...++.++.+.+..++.. .+.+... ++ +..++.||+|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~~~~~~~~~--~v~v~~~-~g------~~~~~~~d~lvi 255 (598)
T 2x8g_A 186 DRSKISHNWSTMVEGVQSHIGSLNWGYKVAL-RDNQVTYLNAKGRLISPH--EVQITDK-NQ------KVSTITGNKIIL 255 (598)
T ss_dssp CGGGCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEECSEEEEEETT--EEEEECT-TC------CEEEEEEEEEEE
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHH-hhCCcEEEEEEEEEcCCC--EEEEEeC-CC------CeEEEEeCEEEE
Confidence 000 1111 11110 011 225788888787777754 4554431 11 124789999999
Q ss_pred cCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHH
Q 010845 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (499)
Q Consensus 177 AtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~ 256 (499)
|||+.|+.|++||.+++..+ ..+. +..... .++|+|||||++|+|+|..|++++
T Consensus 256 AtGs~p~~p~i~G~~~~~~~---~~~~----------~~~~~~----------~~~vvViGgG~~g~E~A~~l~~~g--- 309 (598)
T 2x8g_A 256 ATGERPKYPEIPGAVEYGIT---SDDL----------FSLPYF----------PGKTLVIGASYVALECAGFLASLG--- 309 (598)
T ss_dssp CCCEEECCCSSTTHHHHCEE---HHHH----------TTCSSC----------CCSEEEECCSHHHHHHHHHHHHTT---
T ss_pred eCCCCCCCCCCCCcccceEc---HHHH----------hhCccC----------CCEEEEECCCHHHHHHHHHHHHcC---
Confidence 99999999999997543321 1111 111122 248999999999999999999887
Q ss_pred HHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--------C---CeEE----ECCCc
Q 010845 257 VRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--------S---QKLI----LNDGT 320 (499)
Q Consensus 257 ~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--------~---~~v~----~~~g~ 320 (499)
.+||++++..+++.+++++.+.+.+.|++.||+++++ .+.+++ + +.+. +.+|+
T Consensus 310 -----------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~ 378 (598)
T 2x8g_A 310 -----------GDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGK 378 (598)
T ss_dssp -----------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSC
T ss_pred -----------CEEEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCc
Confidence 8999999888888999999999999999999999998 666663 2 3332 35777
Q ss_pred EEe--eeEEEEcCCCCcch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHH
Q 010845 321 EVP--YGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 395 (499)
Q Consensus 321 ~i~--~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g 395 (499)
+++ +|.||+|+|++|+. + ++..+++++++|+|.||+++|| +.|+|||+|||+. +. +.+++.|.+||
T Consensus 379 ~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-s~~~VyA~GD~~~-----~~---~~~~~~A~~~g 449 (598)
T 2x8g_A 379 KFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQT-TVSNVYAIGDINA-----GK---PQLTPVAIQAG 449 (598)
T ss_dssp EEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSBC-SSTTEEECGGGBT-----TS---CCCHHHHHHHH
T ss_pred EEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCcC-CCCCEEEEeeecC-----CC---CccHHHHHHhH
Confidence 655 99999999999994 4 4677898988999999999998 9999999999974 22 67899999999
Q ss_pred HHHHHHHHH
Q 010845 396 KYLFSLLNR 404 (499)
Q Consensus 396 ~~aa~~i~~ 404 (499)
+.+|.||..
T Consensus 450 ~~aa~~i~~ 458 (598)
T 2x8g_A 450 RYLARRLFA 458 (598)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999864
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=279.67 Aligned_cols=284 Identities=18% Similarity=0.169 Sum_probs=198.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc--cchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-E
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (499)
++|+|||||+||+++|..|++.|++|+|||+...-.+. +.+.... +. .......+...........++.++.+ +
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYI-SV--PKTEGQKLAGALKVHVDEYDVDVIDSQS 78 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBT-TB--SSEEHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceecccccccccc-Cc--CCCCHHHHHHHHHHHHHHcCCeEEccCE
Confidence 68999999999999999999999999999875211100 0000000 00 00000112222111223357888777 8
Q ss_pred EEEEECCCC---EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCc-cCCCHHHHHHHHHHHHHHHh
Q 010845 140 CAGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENAT-FLREVHHAQEIRRKLLLNLM 215 (499)
Q Consensus 140 v~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~-~~~~~~~~~~~~~~~~~~~~ 215 (499)
|+.++.+.+ .+.+... ++ .++.||+||+|||+.|..|++||.+++.. .+.... .+..
T Consensus 79 v~~i~~~~~~~~~~~v~~~-~g--------~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~---~~~~------- 139 (310)
T 1fl2_A 79 ASKLIPAAVEGGLHQIETA-SG--------AVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCP---HCDG------- 139 (310)
T ss_dssp EEEEECCSSTTCCEEEEET-TS--------CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCH---HHHG-------
T ss_pred EEEEEecccCCceEEEEEC-CC--------CEEEeCEEEECcCCCcCCCCCCChhhcccceeEEec---cCcH-------
Confidence 999987532 3333221 12 37899999999999998889999754210 011111 1100
Q ss_pred hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHH
Q 010845 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295 (499)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~ 295 (499)
.....++|+|||+|++|+|+|..|...+ .+|+++++.+.+. +++ .+.+.|+
T Consensus 140 ----------~~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~----~~~~~l~ 190 (310)
T 1fl2_A 140 ----------PLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMK-ADQ----VLQDKLR 190 (310)
T ss_dssp ----------GGGBTCEEEEECCSHHHHHHHHHHHTTB--------------SEEEEECSSSSCC-SCH----HHHHHHH
T ss_pred ----------hhcCCCEEEEECCCHHHHHHHHHHHHhC--------------CEEEEEEeCcccC-ccH----HHHHHHh
Confidence 0123469999999999999999998766 8999999874332 333 3455666
Q ss_pred h-CCCEEEeC-ceEEEeCC-----eEEECC---Cc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCC
Q 010845 296 K-SGVRLVRG-IVKDVDSQ-----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPS 362 (499)
Q Consensus 296 ~-~gV~v~~~-~v~~v~~~-----~v~~~~---g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~ 362 (499)
+ .||+++++ ++.+++.+ ++++.+ |+ ++++|.||+|+|++|+ +++... ++++++|+|.||+++|+ +
T Consensus 191 ~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t-~ 268 (310)
T 1fl2_A 191 SLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCET-N 268 (310)
T ss_dssp TCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBC-S
T ss_pred hCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCcc-C
Confidence 6 69999999 89998754 466653 53 7899999999999998 566653 77788899999999997 9
Q ss_pred CCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 363 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 363 ~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|+|||+|||+.. .++++..|+.||+.+|.+|...+.
T Consensus 269 ~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 305 (310)
T 1fl2_A 269 VKGVFAAGDCTTV--------PYKQIIIATGEGAKASLSAFDYLI 305 (310)
T ss_dssp STTEEECSTTBSC--------SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCC--------cchhhhhhHhhHHHHHHHHHHHHH
Confidence 9999999999962 146788999999999999999886
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=283.86 Aligned_cols=292 Identities=17% Similarity=0.154 Sum_probs=193.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc--chhhh--hccCCCC-Cccc-cchhhhccccccCCCeE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP--LLAST--CVGTLEF-RSVA-EPIARIQPAISREPGSY 134 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~--~~~~~--~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~ 134 (499)
+++||+||||||||++||.+|++.|++|+|||++......+ .++.. ..+.+.. +.+. ..+...........+..
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~ 82 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTT 82 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcE
Confidence 35899999999999999999999999999999875321111 01000 0000000 1010 11111111112224556
Q ss_pred EEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC-ccCCCHHHHHHHHHHHHHH
Q 010845 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 135 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~-~~~~~~~~~~~~~~~~~~~ 213 (499)
+...++..+....+.......+ ..++.||+||||||+.|+.|++||.+... ............
T Consensus 83 ~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~------- 146 (314)
T 4a5l_A 83 IITETIDHVDFSTQPFKLFTEE---------GKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGA------- 146 (314)
T ss_dssp EECCCEEEEECSSSSEEEEETT---------CCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTT-------
T ss_pred EEEeEEEEeecCCCceEEEECC---------CeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhh-------
Confidence 6666777777666544433311 25899999999999999999999985321 111111111100
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~ 293 (499)
....+.++++|||||++|+|+|..|++++ .+||++++..... ..+. ...+.
T Consensus 147 -----------~~~~~~~~vvViGgG~ig~e~A~~l~~~G--------------~~Vt~v~~~~~~~-~~~~---~~~~~ 197 (314)
T 4a5l_A 147 -----------VPIFRNKVLMVVGGGDAAMEEALHLTKYG--------------SKVIILHRRDAFR-ASKT---MQERV 197 (314)
T ss_dssp -----------SGGGTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCC-SCHH---HHHHH
T ss_pred -----------hhhcCCCeEEEECCChHHHHHHHHHHHhC--------------Ceeeeeccccccc-ccch---hhhhh
Confidence 01123469999999999999999999887 8999999863221 1222 23344
Q ss_pred HHhCCCEEEeC-ceEEEeCC-----eEEE-----CCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCC
Q 010845 294 LSKSGVRLVRG-IVKDVDSQ-----KLIL-----NDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPS 362 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~-----~v~~-----~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~ 362 (499)
+...+++.+.. .+.++... ++.+ .+++++++|.|++++|.+|+.-+....+..+++|.+ ||+++|| +
T Consensus 198 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~i-v~~~~~T-s 275 (314)
T 4a5l_A 198 LNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYI-LTEGPKT-S 275 (314)
T ss_dssp HTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCB-CCBTTBC-S
T ss_pred hcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeE-eCCCCcc-C
Confidence 56667888776 55555432 3333 245689999999999999995333445777888866 8889999 9
Q ss_pred CCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 363 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 363 ~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|||||+|||+.. ..+++..|+.||+.||.++.++++
T Consensus 276 ~pgIyA~GDv~~~--------~~~~~~~A~~~G~~AA~~~~~yL~ 312 (314)
T 4a5l_A 276 VDGVFACGDVCDR--------VYRQAIVAAGSGCMAALSCEKWLQ 312 (314)
T ss_dssp STTEEECSTTTCS--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccCC--------cchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999952 145788899999999999999886
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=283.96 Aligned_cols=288 Identities=15% Similarity=0.148 Sum_probs=206.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch--hhh-hccCCCCCcc-ccchh-hhccccccCCCeEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL--AST-CVGTLEFRSV-AEPIA-RIQPAISREPGSYF 135 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~--~~~-~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 135 (499)
.+++|+|||||+||+++|..|++.|++|+|||+++.+...... +.. .........+ ...+. .+...+. ..++.+
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 91 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAE-RYNPDV 91 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHH-TTCCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHH-HhCCEE
Confidence 3579999999999999999999999999999998765332110 000 0000000000 01111 1111122 245555
Q ss_pred EE-EEEEEEECCCC-EEEEeeecCccccCCCceeeeeCCeEEEcCCC---CccCCCCCC-ccccC---c--cCCCHHHHH
Q 010845 136 FL-SHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHG-VKENA---T--FLREVHHAQ 204 (499)
Q Consensus 136 ~~-~~v~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~---~~~~~~ipG-~~~~~---~--~~~~~~~~~ 204 (499)
+. .+|+.++.+.+ .+.+... ++ .++.||+||+|||+ .|..+++|| .++.. + .+++..
T Consensus 92 ~~~~~v~~i~~~~~~~~~v~~~-~g--------~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~--- 159 (360)
T 3ab1_A 92 VLNETVTKYTKLDDGTFETRTN-TG--------NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVE--- 159 (360)
T ss_dssp ECSCCEEEEEECTTSCEEEEET-TS--------CEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGG---
T ss_pred EcCCEEEEEEECCCceEEEEEC-CC--------cEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHH---
Confidence 44 58889987654 4444331 11 37999999999998 566667777 53211 1 111110
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCCC
Q 010845 205 EIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFD 283 (499)
Q Consensus 205 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~~ 283 (499)
....++|+|||+|++|+|+|..|.+.+ .+|+++++.. +++ .
T Consensus 160 ----------------------~~~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~~-~- 201 (360)
T 3ab1_A 160 ----------------------DFKGKRVVIVGGGDSALDWTVGLIKNA--------------ASVTLVHRGHEFQG-H- 201 (360)
T ss_dssp ----------------------GGTTCEEEEECSSHHHHHHHHHTTTTS--------------SEEEEECSSSSCSS-C-
T ss_pred ----------------------HcCCCcEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCCCCC-C-
Confidence 112359999999999999999998765 8999999874 433 2
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEEC--CC--cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCce
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILN--DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRI 352 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~--~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i 352 (499)
+.+.+.+.+.+++.||+++.+ +|.+++.+ +|.+. +| +++++|.||+|+|+.|+ ++++.++++.+ +|+|
T Consensus 202 ~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i 280 (360)
T 3ab1_A 202 GKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENAL 280 (360)
T ss_dssp SHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEE
T ss_pred HHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCee
Confidence 356677788888999999999 89888753 57774 77 57999999999999998 58888888877 7899
Q ss_pred eeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 353 ~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.||+++|| +.|+|||+|||+..+. .++++..|..||..+|+||...+.
T Consensus 281 ~vd~~~~t-~~~~vya~GD~~~~~~------~~~~~~~A~~~g~~aa~~i~~~l~ 328 (360)
T 3ab1_A 281 VVDSHMKT-SVDGLYAAGDIAYYPG------KLKIIQTGLSEATMAVRHSLSYIK 328 (360)
T ss_dssp ECCTTSBC-SSTTEEECSTTEECTT------CCCSHHHHHHHHHHHHHHHHHHHS
T ss_pred eecCCCcC-CCCCEEEecCccCCCC------ccceeehhHHHHHHHHHHHHhhcC
Confidence 99999998 9999999999997431 378899999999999999998875
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=296.15 Aligned_cols=282 Identities=17% Similarity=0.193 Sum_probs=205.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----hh-----------hh---c--cC------CCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS-----------TC---V--GT------LEFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~-----------~~---~--g~------~~~~~ 115 (499)
+++|+|||||+||+++|..|++.|++|+|||+++ +..+... +. .. . |. .+...
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 86 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGKA 86 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHHH
Confidence 3799999999999999999999999999999975 2221100 00 00 0 00 01111
Q ss_pred cccchhhh--------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 116 VAEPIARI--------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 116 ~~~~~~~~--------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
+...+... ...+.....+.++.++...++ .+.|.+.+ ..++.||+||||||+.|..|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~--~~~v~~~~-----------~~~~~~d~lViATGs~p~~p~~ 153 (492)
T 3ic9_A 87 VMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD--EHTLQVDD-----------HSQVIAKRIVIATGSRPNYPEF 153 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE--TTEEEETT-----------TEEEEEEEEEECCCEECCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec--CCEEEEcC-----------CcEEEeCEEEEccCCCCcCCCC
Confidence 11111110 011111123345566555554 35666633 2489999999999999988876
Q ss_pred CCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010845 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 188 pG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
+|.. +..+ +..+. +..... .++|+|||||++|+|+|..|.+++
T Consensus 154 ~~~~~~~v~---t~~~~----------~~~~~~----------~k~vvViGgG~ig~E~A~~l~~~g------------- 197 (492)
T 3ic9_A 154 LAAAGSRLL---TNDNL----------FELNDL----------PKSVAVFGPGVIGLELGQALSRLG------------- 197 (492)
T ss_dssp HHTTGGGEE---CHHHH----------TTCSSC----------CSEEEEESSCHHHHHHHHHHHHTT-------------
T ss_pred CCccCCcEE---cHHHH----------hhhhhc----------CCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 6532 2222 22221 122222 359999999999999999999987
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEC--CC--cEEeeeEEEEcCCCCcc
Q 010845 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~--~g--~~i~~D~vi~a~G~~p~ 336 (499)
.+|+++++. ++++.+++++.+.+.+.|++. |+++++ +|.+++.+ . +.+. +| +++++|.||+|+|++|+
T Consensus 198 -~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 198 -VIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp -CEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred -CeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 899999987 688999999999999999998 999999 89888643 3 4443 67 68999999999999999
Q ss_pred h-h--cccCCCCCCCCCceeeC-CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010845 337 T-L--VKSLDLPKSPGGRIGID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 337 ~-~--~~~~~l~~~~~G~i~vd-~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
. + ++.++++++++|+|.|| +++|| +.|+|||+|||+.. +++++.|.+||+.+|.||...
T Consensus 276 ~~~l~l~~~gl~~~~~G~i~vd~~~~~t-~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~ 338 (492)
T 3ic9_A 276 VDKLGLENTSIELDKKNSPLFDELTLQT-SVDHIFVAGDANNT---------LTLLHEAADDGKVAGTNAGAY 338 (492)
T ss_dssp CSSSCGGGSCCCBCTTCCBCCCTTTCBC-SSTTEEECGGGGTS---------SCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCChhhcCCEECCCCCEeECcccccC-CCCCEEEEEecCCC---------CccHHHHHHHHHHHHHHHcCC
Confidence 4 4 67889999999999999 89999 99999999999952 678999999999999998753
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=286.87 Aligned_cols=288 Identities=19% Similarity=0.186 Sum_probs=198.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc------------cchhhhhccCCCCC-c-c---ccchhhhc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT------------PLLASTCVGTLEFR-S-V---AEPIARIQ 124 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~------------~~~~~~~~g~~~~~-~-~---~~~~~~~~ 124 (499)
+++|+|||||++|+++|..|++.|++|+|||+++.+... +.......+..... . . ...+..+.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL 82 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence 478999999999999999999999999999998764321 11000011110000 0 0 01122222
Q ss_pred cccccCCCeEEEE-EEEEEEECCCCEEE-EeeecCccccCCCceeeeeCCeEEEcCCC--CccCCCCCCccccC---ccC
Q 010845 125 PAISREPGSYFFL-SHCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVKENA---TFL 197 (499)
Q Consensus 125 ~~~~~~~~~~~~~-~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yd~LViAtG~--~~~~~~ipG~~~~~---~~~ 197 (499)
..+....++.++. .+|++++.+++.+. +...+ .++.||+||+|||. .|..|.+||..+.. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~----------g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~ 152 (357)
T 4a9w_A 83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDG----------RQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHS 152 (357)
T ss_dssp HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTS----------CEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEG
T ss_pred HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCC----------CEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEe
Confidence 2222224555544 58999998888766 55411 27999999999995 67778999975421 111
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-
Q 010845 198 REVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN- 276 (499)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~- 276 (499)
..+.+ ......++|+|||+|++|+|+|.+|++.+ +|+++++.
T Consensus 153 ~~~~~----------------------~~~~~~~~v~VvG~G~~g~e~a~~l~~~~---------------~v~~v~~~~ 195 (357)
T 4a9w_A 153 AHYST----------------------PAPFAGMRVAIIGGGNSGAQILAEVSTVA---------------ETTWITQHE 195 (357)
T ss_dssp GGCCC----------------------SGGGTTSEEEEECCSHHHHHHHHHHTTTS---------------EEEEECSSC
T ss_pred ccCCC----------------------hhhcCCCEEEEECCCcCHHHHHHHHHhhC---------------CEEEEECCC
Confidence 11100 01123469999999999999999998753 59999875
Q ss_pred -CcCCCC--CHHHHHHHHHHHH----------------------------hCCCEEEeC-ceEEEeCCeEEECCCcEEee
Q 010845 277 -EILSSF--DDRLRHYATTQLS----------------------------KSGVRLVRG-IVKDVDSQKLILNDGTEVPY 324 (499)
Q Consensus 277 -~~l~~~--~~~~~~~~~~~l~----------------------------~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~ 324 (499)
.++|.. +..+.+.+.+.+. +.|+ +... .+.+++.+++.+++|+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~~v~~~~g~~i~~ 274 (357)
T 4a9w_A 196 PAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSPTGMQWADGTERAF 274 (357)
T ss_dssp CCBCCTTCCTHHHHTC----------------------CBCCCHHHHHHHHTTC-CCEECCCSEEETTEEECTTSCEEEC
T ss_pred CeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeCCeeEECCCCEecC
Confidence 355532 3344333333332 4455 4444 78889999999999999999
Q ss_pred eEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCC--CCCCCCCCeEEecc--ccccccCCCCCCCCchHHHHHHHHHHHH
Q 010845 325 GLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW--LRVPSVQDVFAVGD--CSGYLESTGKTVLPALAQVAERQGKYLF 399 (499)
Q Consensus 325 D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~--l~~~~~~~Ifa~GD--~a~~~~~~g~~~~p~~~~~A~~~g~~aa 399 (499)
|+||+|+|++|+ ++++.++++ +++|+|.||++ +++ +.|||||+|| |+. +.++++..|.+||+.+|
T Consensus 275 D~vi~a~G~~p~~~~l~~~gl~-~~~G~i~vd~~~l~~t-~~~~vya~Gd~d~~~--------~~~~~~~~A~~~g~~~a 344 (357)
T 4a9w_A 275 DAVIWCTGFRPALSHLKGLDLV-TPQGQVEVDGSGLRAL-AVPSVWLLGYGDWNG--------MASATLIGVTRYAREAV 344 (357)
T ss_dssp SEEEECCCBCCCCGGGTTTTCB-CTTSCBCBCTTSCBBS-SCTTEEECSSCGGGS--------TTCSSTTTHHHHHHHHH
T ss_pred CEEEECCCcCCCCcccCccccc-CCCCCccccCCcccCC-CCCCeEEeccccccc--------cchhhhhhhHHHHHHHH
Confidence 999999999999 788888998 88899999999 777 9999999995 552 22667778999999999
Q ss_pred HHHHHHHH
Q 010845 400 SLLNRIGK 407 (499)
Q Consensus 400 ~~i~~~~~ 407 (499)
++|...++
T Consensus 345 ~~i~~~l~ 352 (357)
T 4a9w_A 345 RQVTAYCA 352 (357)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 99999886
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=281.02 Aligned_cols=282 Identities=18% Similarity=0.173 Sum_probs=196.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhh---hhccC---CCCCccccchhhhccccccCCCeE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---TCVGT---LEFRSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~---~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~ 134 (499)
.+++|+|||||+||+++|..|++.|++|+|||+.. ......... ...+. +....+...+.+. ....++.
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~v~ 87 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMTTTDVENYPGFRNGITGPELMDEMREQ----ALRFGAD 87 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHH----HHHTTCE
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceeccchhhhcCCCCCCCCHHHHHHHHHHH----HHHcCCE
Confidence 45799999999999999999999999999999752 111100000 00000 0111111122221 2224677
Q ss_pred EEEEEEEEEECCC-CEE-EEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC-ccCCCHHHHHHHHHHHH
Q 010845 135 FFLSHCAGIDTDN-HVV-HCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLL 211 (499)
Q Consensus 135 ~~~~~v~~id~~~-~~v-~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~-~~~~~~~~~~~~~~~~~ 211 (499)
++.++|+.++... ..+ .+.+ + .++.||+||+|||+.+..|++||.+++. ..+..... ....
T Consensus 88 ~~~~~v~~i~~~~~~~v~~~~~---g--------~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~---~~~~-- 151 (335)
T 2a87_A 88 LRMEDVESVSLHGPLKSVVTAD---G--------QTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCAT---CDGF-- 151 (335)
T ss_dssp EECCCEEEEECSSSSEEEEETT---S--------CEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHH---HHGG--
T ss_pred EEEeeEEEEEeCCcEEEEEeCC---C--------CEEEeCEEEECCCCCccCCCCCchHhccCCceEEeec---cchh--
Confidence 8777889998722 234 3222 2 3799999999999999989999875321 01111111 0000
Q ss_pred HHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCCCHHHHHHH
Q 010845 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYA 290 (499)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~~~~~~~~~ 290 (499)
....++|+|||+|++|+|+|..|.+.+ .+|+++++.. ++. .+.+.
T Consensus 152 ---------------~~~~~~v~ViG~G~~g~e~a~~l~~~g--------------~~V~l~~~~~~~~~--~~~~~--- 197 (335)
T 2a87_A 152 ---------------FFRDQDIAVIGGGDSAMEEATFLTRFA--------------RSVTLVHRRDEFRA--SKIML--- 197 (335)
T ss_dssp ---------------GGTTCEEEEECSSHHHHHHHHHHTTTC--------------SEEEEECSSSSCSS--CTTHH---
T ss_pred ---------------hcCCCEEEEECCCHHHHHHHHHHHHhC--------------CeEEEEEcCCcCCc--cHHHH---
Confidence 012369999999999999999998766 8999999874 432 22222
Q ss_pred HHHHHhCCCEEEeC-ceEEEeCCe----EEEC---CC--cEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCC-C
Q 010845 291 TTQLSKSGVRLVRG-IVKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEW-L 358 (499)
Q Consensus 291 ~~~l~~~gV~v~~~-~v~~v~~~~----v~~~---~g--~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~-l 358 (499)
.+.+++.||+++++ +|.+++.+. +.++ +| +++++|.||+|+|++|+. ++. .+++++++|+|.||++ +
T Consensus 198 ~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~ 276 (335)
T 2a87_A 198 DRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTT 276 (335)
T ss_dssp HHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSS
T ss_pred HHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCC
Confidence 24456789999999 899998764 7775 35 579999999999999994 554 5777888899999997 4
Q ss_pred CCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 359 ~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
++ +.|||||+|||+.. .++++..|..||+.+|.+|...+.
T Consensus 277 ~t-~~~~iya~GD~~~~--------~~~~~~~A~~~g~~aA~~i~~~l~ 316 (335)
T 2a87_A 277 ST-SLPGVFAAGDLVDR--------TYRQAVTAAGSGCAAAIDAERWLA 316 (335)
T ss_dssp BC-SSTTEEECGGGTCC--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-CCCCEEEeeecCCc--------cHHHHHHHHHhHHHHHHHHHHHhh
Confidence 66 99999999999952 257789999999999999998886
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=278.98 Aligned_cols=293 Identities=17% Similarity=0.159 Sum_probs=200.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcC----CCCcccccchhhhhccCCCC-Ccc-ccchhhhccccccCCCeEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP----RNHMVFTPLLASTCVGTLEF-RSV-AEPIARIQPAISREPGSYF 135 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~----~~~~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 135 (499)
+++|+|||||++|+++|..|++.|++|+|||+ .................... ..+ ...+...........++.+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~ 87 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 87 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999999999998 22211110000000000000 000 0111111111222356778
Q ss_pred EEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc--CccCCCHHHHHHHHHHHHHH
Q 010845 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN--ATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 136 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~--~~~~~~~~~~~~~~~~~~~~ 213 (499)
+.++|+.++.+.+.+++.. ++ ..+.||+||+|||+.+..|++||.++. .+....+.........
T Consensus 88 ~~~~v~~i~~~~~~~~v~~--~~--------~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 153 (333)
T 1vdc_A 88 FTETVTKVDFSSKPFKLFT--DS--------KAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGA---- 153 (333)
T ss_dssp ECCCCCEEECSSSSEEEEC--SS--------EEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTT----
T ss_pred EEeEEEEEEEcCCEEEEEE--CC--------cEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccc----
Confidence 7778999998777554443 12 479999999999999998999987541 1211111111111100
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~ 293 (499)
+ +....++|+|||+|.+|+|+|..|.+.+ .+|+++++.+.+.. .+.+ ..+.
T Consensus 154 ~-----------~~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~~-~~~~---~~~~ 204 (333)
T 1vdc_A 154 A-----------PIFRNKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDAFRA-SKIM---QQRA 204 (333)
T ss_dssp S-----------GGGTTSEEEEECCSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHHH---HHHH
T ss_pred h-----------hhcCCCeEEEECCChHHHHHHHHHHhcC--------------CeEEEEecCCcCCc-cHHH---HHHH
Confidence 0 0123469999999999999999998766 89999998743321 2222 2244
Q ss_pred HHhCCCEEEeC-ceEEEeCCe-------EEEC---CC--cEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCC-C
Q 010845 294 LSKSGVRLVRG-IVKDVDSQK-------LILN---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEW-L 358 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~~-------v~~~---~g--~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~-l 358 (499)
+++.||+++.+ +|.+++.+. +.++ +| +++++|.||+|+|++|+. ++. .+++++++|+|.||++ +
T Consensus 205 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~ 283 (333)
T 1vdc_A 205 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTT 283 (333)
T ss_dssp HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSC
T ss_pred HhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhc
Confidence 57789999998 899987542 7775 45 579999999999999995 444 5788888899999997 4
Q ss_pred CCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 359 ~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+| +.|+|||+|||+.. .++++..|..||+.+|.+|.+.+.
T Consensus 284 ~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 323 (333)
T 1vdc_A 284 QT-SVPGVFAAGDVQDK--------KYRQAITAAGTGCMAALDAEHYLQ 323 (333)
T ss_dssp BC-SSTTEEECGGGGCS--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-CCCCEEEeeeccCC--------CchhHHHHHHhHHHHHHHHHHHHH
Confidence 66 99999999999952 157899999999999999999887
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=277.80 Aligned_cols=290 Identities=14% Similarity=0.161 Sum_probs=197.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCcc------------cccchhhhhccCCC-----CC---------
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMV------------FTPLLASTCVGTLE-----FR--------- 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~~------------~~~~~~~~~~g~~~-----~~--------- 114 (499)
+++|+|||||+||+++|..|++.|+ +|+|||+++ .. +.+.......+... ..
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE 82 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence 4789999999999999999999999 999999986 11 11111111111100 00
Q ss_pred -ccc-cchhhhccccccCCCeEEEEE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc
Q 010845 115 -SVA-EPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK 191 (499)
Q Consensus 115 -~~~-~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~ 191 (499)
... ..+......+....++.++.+ +|+.++.+.+.+.+... + .++.||+||+|||+.+. |.+|+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~---------g~~~~d~vVlAtG~~~~-p~ip~-- 149 (369)
T 3d1c_A 83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATT-T---------ETYHADYIFVATGDYNF-PKKPF-- 149 (369)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEES-S---------CCEEEEEEEECCCSTTS-BCCCS--
T ss_pred cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeC-C---------CEEEeCEEEECCCCCCc-cCCCC--
Confidence 000 111111111222346666654 78889876544444331 1 25899999999999865 56776
Q ss_pred ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEE
Q 010845 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (499)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vt 271 (499)
+..++...+.+ .+..+.++|+|||+|++|+|+|..|.+.+ .+|+
T Consensus 150 ~~~~~~~~~~~----------------------~~~~~~~~vvVvG~G~~g~e~a~~l~~~g--------------~~V~ 193 (369)
T 3d1c_A 150 KYGIHYSEIED----------------------FDNFNKGQYVVIGGNESGFDAAYQLAKNG--------------SDIA 193 (369)
T ss_dssp SSCEEGGGCSC----------------------GGGSCSSEEEEECCSHHHHHHHHHHHHTT--------------CEEE
T ss_pred CceechhhcCC----------------------hhhcCCCEEEEECCCcCHHHHHHHHHhcC--------------CeEE
Confidence 22222211100 00113368999999999999999999876 8999
Q ss_pred EEeCC-CcCC-------CCCHHHHHHHHHHHHhCC-CEEEeC-ceEEE--eCC--eEEECCCcEEe-eeEEEEcCCCCcc
Q 010845 272 LIEAN-EILS-------SFDDRLRHYATTQLSKSG-VRLVRG-IVKDV--DSQ--KLILNDGTEVP-YGLLVWSTGVGPS 336 (499)
Q Consensus 272 lv~~~-~~l~-------~~~~~~~~~~~~~l~~~g-V~v~~~-~v~~v--~~~--~v~~~~g~~i~-~D~vi~a~G~~p~ 336 (499)
++++. .+++ .+++.+.+.+.+.|++.| |+++.+ +|.++ +++ .+++.||+++. +|.||+|+|++|+
T Consensus 194 lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~ 273 (369)
T 3d1c_A 194 LYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDAT 273 (369)
T ss_dssp EECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGG
T ss_pred EEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCc
Confidence 99987 4553 256788889999999997 999999 89998 445 46778887775 5999999999999
Q ss_pred h-hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 337 T-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 337 ~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
. ++.+.+++ +++|++.||++++.+++|||||+|||+..+.. . ......|.+||+++|++|...+.
T Consensus 274 ~~~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~----~-~~~~~~~~~~a~~~a~~l~~~~~ 339 (369)
T 3d1c_A 274 KNPIVQQLFV-TTNQDIKLTTHDESTRYPNIFMIGATVENDNA----K-LCYIYKFRARFAVLAHLLTQREG 339 (369)
T ss_dssp GSHHHHHHSC-CTTSCCCBCTTSBBSSSTTEEECSTTCCCSSC----C-CCSHHHHGGGHHHHHHHHHHHTT
T ss_pred cchhhhhhcc-CCCCCEEechhhcccCCCCeEEeccccccCCe----e-EEEEehhhHHHHHHHHHHhcccC
Confidence 5 66655566 77899999987554499999999999975321 1 22345688899999999987664
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=281.80 Aligned_cols=281 Identities=19% Similarity=0.187 Sum_probs=200.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc--ccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF--TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
..++|+|||||+||+++|.+|++.|++|+|||++..-.+ ...+.... +.. . .....+...........++.++.+
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~-~~~-~-~~~~~l~~~l~~~~~~~gv~v~~~ 287 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYI-SVP-K-TEGQKLAGALKAHVSDYDVDVIDS 287 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBT-TBS-S-BCHHHHHHHHHHHHHTSCEEEECS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccC-CCC-C-CCHHHHHHHHHHHHHHcCCEEEcC
Confidence 457999999999999999999999999999987421100 00000000 000 0 000112221111223457888776
Q ss_pred -EEEEEECCC-----CEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC---ccCCCHHHHHHHHHH
Q 010845 139 -HCAGIDTDN-----HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA---TFLREVHHAQEIRRK 209 (499)
Q Consensus 139 -~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~---~~~~~~~~~~~~~~~ 209 (499)
+|+.++.+. ..|++.+ + ..+.||+||+|||+.+..+++||.+++. ......
T Consensus 288 ~~v~~i~~~~~~~~~~~V~~~~---g--------~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~--------- 347 (521)
T 1hyu_A 288 QSASKLVPAATEGGLHQIETAS---G--------AVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPH--------- 347 (521)
T ss_dssp CCEEEEECCSSTTSCEEEEETT---S--------CEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTT---------
T ss_pred CEEEEEEeccCCCceEEEEECC---C--------CEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeec---------
Confidence 899998642 2344332 2 3799999999999999989999975321 111000
Q ss_pred HHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCCCHHHHH
Q 010845 210 LLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRH 288 (499)
Q Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~~~~~~~ 288 (499)
.+ ......++|+|||||++|+|+|..|+..+ .+|+++++.+ +++ + +
T Consensus 348 ------------~~-~~~~~~k~V~ViGgG~~g~E~A~~L~~~g--------------~~Vtlv~~~~~l~~--~----~ 394 (521)
T 1hyu_A 348 ------------CD-GPLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMKA--D----Q 394 (521)
T ss_dssp ------------CC-GGGGBTSEEEEECCSHHHHHHHHHHHHHB--------------SEEEEECSSSSCCS--C----H
T ss_pred ------------Cc-hhhcCCCeEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEeCcccCc--C----H
Confidence 00 01124569999999999999999999876 8999999874 432 2 3
Q ss_pred HHHHHHHh-CCCEEEeC-ceEEEeCC-----eEEECC---Cc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeC
Q 010845 289 YATTQLSK-SGVRLVRG-IVKDVDSQ-----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGID 355 (499)
Q Consensus 289 ~~~~~l~~-~gV~v~~~-~v~~v~~~-----~v~~~~---g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd 355 (499)
.+.+.|++ .||+++++ .+++++.+ ++.+.+ |+ ++++|.||+++|..|+ +++.. .++++++|+|.||
T Consensus 395 ~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd 473 (521)
T 1hyu_A 395 VLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIID 473 (521)
T ss_dssp HHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCC
T ss_pred HHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeC
Confidence 45666777 69999999 89998754 466653 53 6899999999999998 47665 4777889999999
Q ss_pred CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 356 ~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+++|| +.|+|||+|||+.. .++++..|+.||..||.+|...+.
T Consensus 474 ~~~~t-s~p~VfA~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~L~ 516 (521)
T 1hyu_A 474 AKCET-SVKGVFAAGDCTTV--------PYKQIIIATGEGAKASLSAFDYLI 516 (521)
T ss_dssp TTCBC-SSTTEEECSTTBCC--------SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCEEEeecccCC--------CcceeeehHHhHHHHHHHHHHHHH
Confidence 99998 99999999999963 146789999999999999998876
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-33 Score=310.18 Aligned_cols=348 Identities=13% Similarity=0.072 Sum_probs=223.5
Q ss_pred ccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCC-ccccccCCCCC---CCCCCCCcEEEECCchHHHH
Q 010845 3 LFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPST-VQLTQYSGLGP---TKANEKPRVVVLGSGWAGCR 76 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~VvIIGgG~aGl~ 76 (499)
|+--++|+|.+ +|+..|.+.........+..+.+|..+..... ......+..+. ......++|+|||||+||++
T Consensus 122 ~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgGpAGl~ 201 (1025)
T 1gte_A 122 LGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASIS 201 (1025)
T ss_dssp THHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCSHHHHH
T ss_pred hhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECccHHHHH
Confidence 34456899998 99999999876544567777777765531000 00000000000 01123579999999999999
Q ss_pred HHHhccCCCC-eEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeee
Q 010845 77 LMKGIDTSLY-DVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETV 155 (499)
Q Consensus 77 aA~~L~~~g~-~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~ 155 (499)
+|.+|++.|+ +|+|||+++.+.... . .+..........+..... +....+++++.++... .+.+++++
T Consensus 202 aA~~L~~~G~~~Vtv~E~~~~~GG~~-~----~~ip~~~~~~~~~~~~~~-~~~~~gv~~~~~~~v~----~~~v~~~~- 270 (1025)
T 1gte_A 202 CASFLARLGYSDITIFEKQEYVGGLS-T----SEIPQFRLPYDVVNFEIE-LMKDLGVKIICGKSLS----ENEITLNT- 270 (1025)
T ss_dssp HHHHHHHTTCCCEEEEESSSSCSTHH-H----HTSCTTTSCHHHHHHHHH-HHHTTTCEEEESCCBS----TTSBCHHH-
T ss_pred HHHHHHhcCCCcEEEEeCCCCCCccc-c----ccCCcccCCHHHHHHHHH-HHHHCCcEEEcccEec----cceEEhhh-
Confidence 9999999999 799999987654431 1 111111100011111111 2223577877655432 12333322
Q ss_pred cCccccCCCceeeeeCCeEEEcCCC-CccCCCC-CCccccCccCCCHHHHHHHHHHHHH---HHhhcCCCCCCHHHHhcc
Q 010845 156 TDELRTLEPWKFKISYDKLVIALGA-EASTFGI-HGVKENATFLREVHHAQEIRRKLLL---NLMLSDVPGISEEEKSRL 230 (499)
Q Consensus 156 ~~~~~~~~~~~~~i~yd~LViAtG~-~~~~~~i-pG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~ 230 (499)
..++.||+||||||+ .|+.+++ +|+++.. .+.+..+..+..+.... ++....++ ...
T Consensus 271 ----------~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~-gv~~a~~~L~~~~~~~~~~~~~~~~~~~-------~~~ 332 (1025)
T 1gte_A 271 ----------LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQ-GFYTSKDFLPLVAKSSKAGMCACHSPLP-------SIR 332 (1025)
T ss_dssp ----------HHHTTCCEEEECCCCCEECCCGGGTTCCTTT-TEEEHHHHHHHHHHHHCBTTBSCCCCCC-------CCC
T ss_pred ----------cCccCCCEEEEecCCCCCCCCCCCCCCCCCC-CEEEhHHHHHHHHhhccccccccccccc-------ccC
Confidence 125789999999999 4876654 4653210 11122222221111000 00000011 123
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 307 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~ 307 (499)
++|+|||||++|+|+|..+.+.+. .+||++++. .+++.+++++ +.+++.||+++.+ .+.
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~~~~~ 394 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGA-------------RRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPFLSPR 394 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTC-------------SEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECSEEEE
T ss_pred CcEEEECCChHHHHHHHHHHHcCC-------------CEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeCCCce
Confidence 489999999999999999988761 389999986 4677776654 4567789999988 777
Q ss_pred EEeC--Ce---EEEC------CC---------cEEeeeEEEEcCCCCcc--hhccc-CCCCCCCCCceeeCC-CCCCCCC
Q 010845 308 DVDS--QK---LILN------DG---------TEVPYGLLVWSTGVGPS--TLVKS-LDLPKSPGGRIGIDE-WLRVPSV 363 (499)
Q Consensus 308 ~v~~--~~---v~~~------~g---------~~i~~D~vi~a~G~~p~--~~~~~-~~l~~~~~G~i~vd~-~l~~~~~ 363 (499)
++.. +. |++. +| .++++|.||+|+|++|+ .++.. .+++++++|+|.||+ ++|| +.
T Consensus 395 ~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~T-s~ 473 (1025)
T 1gte_A 395 KVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-SE 473 (1025)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-SS
T ss_pred EEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCcc-CC
Confidence 7753 32 3332 22 36899999999999874 46665 488899999999997 8998 99
Q ss_pred CCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 364 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 364 ~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|+|||+|||+.. +.++..|++||+.||++|...+.
T Consensus 474 ~~VfA~GD~~~~---------~~~~~~A~~~G~~aA~~i~~~L~ 508 (1025)
T 1gte_A 474 PWVFAGGDIVGM---------ANTTVESVNDGKQASWYIHKYIQ 508 (1025)
T ss_dssp TTEEECSGGGCS---------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCC---------chHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999951 67899999999999999998775
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=273.91 Aligned_cols=271 Identities=11% Similarity=0.092 Sum_probs=187.9
Q ss_pred CcEEEECCchHHHHHHHhccC---CCCe---EEEEcCCCCcccccchh-----------------h-hhc-------c--
Q 010845 63 PRVVVLGSGWAGCRLMKGIDT---SLYD---VVCVSPRNHMVFTPLLA-----------------S-TCV-------G-- 109 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~---~g~~---V~lie~~~~~~~~~~~~-----------------~-~~~-------g-- 109 (499)
++|+|||||+||+++|..|++ .|++ |+|||+++.+....... . ... +
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 689999999999999999999 9999 99999987543221100 0 000 0
Q ss_pred --------------CCCCCccccchhhhccccccCCCeE---EEEEEEEEEECCCC----EEEEeeecCccccCCCceee
Q 010845 110 --------------TLEFRSVAEPIARIQPAISREPGSY---FFLSHCAGIDTDNH----VVHCETVTDELRTLEPWKFK 168 (499)
Q Consensus 110 --------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~id~~~~----~v~~~~~~~~~~~~~~~~~~ 168 (499)
.+....+...+..+ ....++. ...++|+.|+...+ .|++.+..++ +..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g------~~~~ 152 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGR----VEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTD------TIYS 152 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHH----HHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTT------EEEE
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHH----HHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCC------ceEE
Confidence 00000111111211 1112332 23578999987655 4555431111 1247
Q ss_pred eeCCeEEEcCC--CCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHH
Q 010845 169 ISYDKLVIALG--AEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 243 (499)
Q Consensus 169 i~yd~LViAtG--~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gv 243 (499)
+.||+||+||| +.|+.|.+||.+.. .++..++.+ ......++|+|||+|++|+
T Consensus 153 ~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~----------------------~~~~~~k~VvVVG~G~sg~ 210 (464)
T 2xve_A 153 EEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRD----------------------ALEFKDKTVLLVGSSYSAE 210 (464)
T ss_dssp EEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCC----------------------GGGGTTSEEEEECCSTTHH
T ss_pred EEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCC----------------------HhHcCCCEEEEEcCCCCHH
Confidence 89999999999 88999999997542 122211110 0112346999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEE
Q 010845 244 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEV 322 (499)
Q Consensus 244 e~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i 322 (499)
|+|.+|+..+ .+|+++++. .+++..- ..||+++ ..|.++++++|+++||+++
T Consensus 211 eiA~~l~~~g--------------~~V~li~~~~~~~~~~~------------~~~V~~~-~~V~~i~~~~V~~~dG~~i 263 (464)
T 2xve_A 211 DIGSQCYKYG--------------AKKLISCYRTAPMGYKW------------PENWDER-PNLVRVDTENAYFADGSSE 263 (464)
T ss_dssp HHHHHHHHTT--------------CSEEEEECSSCCCCCCC------------CTTEEEC-SCEEEECSSEEEETTSCEE
T ss_pred HHHHHHHHhC--------------CeEEEEEECCCCCCCCC------------CCceEEc-CCeEEEeCCEEEECCCCEE
Confidence 9999999987 899999986 5554310 2478887 6788998899999999999
Q ss_pred eeeEEEEcCCCCcc-hhccc-CCCCCCCCCceeeCCC---CCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHH
Q 010845 323 PYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDEW---LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397 (499)
Q Consensus 323 ~~D~vi~a~G~~p~-~~~~~-~~l~~~~~G~i~vd~~---l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~ 397 (499)
++|.||+|||++|+ +++.. +++..+++|++ ++.+ +++ +.|+|||+|||+. ...+..|..||++
T Consensus 264 ~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~~~~~~~~t-~~p~i~aiGd~~~----------~~~~~~a~~qa~~ 331 (464)
T 2xve_A 264 KVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWE-DNPKFFYIGMQDQ----------WYSFNMFDAQAWY 331 (464)
T ss_dssp ECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-SSEETTTEES-SSTTEEECSCSCC----------SSCHHHHHHHHHH
T ss_pred eCCEEEECCCCCCCCCCcCcccccccCCCccc-ccccceEecC-CCCCEEEEeCccc----------ccchHHHHHHHHH
Confidence 99999999999999 67765 67777766565 4433 455 8999999999884 3467889999999
Q ss_pred HHHHHHH
Q 010845 398 LFSLLNR 404 (499)
Q Consensus 398 aa~~i~~ 404 (499)
+|++|..
T Consensus 332 ~a~~l~G 338 (464)
T 2xve_A 332 ARDVIMG 338 (464)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9998853
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-32 Score=275.49 Aligned_cols=301 Identities=14% Similarity=0.144 Sum_probs=195.8
Q ss_pred CCcEEEECCchHHHHHHHhccC-C------CCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-S------LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~------g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (499)
+++|+|||||+||+++|..|++ . |++|+|||+.+.+. ..+.+.+..+.....++...+... ....+++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g-g~~~~gv~p~~~~~~~~~~~~~~~----~~~~~v~ 77 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW-GLVRSGVAPDHPKIKSISKQFEKT----AEDPRFR 77 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS-THHHHTSCTTCTGGGGGHHHHHHH----HTSTTEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC-CccccccCCCCCCHHHHHHHHHHH----HhcCCCE
Confidence 5799999999999999999998 6 89999999987743 222222222222222333333332 2346787
Q ss_pred EEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCC-ccCCCCCCcc-ccCccCCCHHHHHHHHHHHHH
Q 010845 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLL 212 (499)
Q Consensus 135 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~ 212 (499)
++.+ +. + .+.|++++ ..+.||+||+|||+. ++.+++||.+ ..++ +. ..+...+..
T Consensus 78 ~~~~-v~-v---~~~v~~~~------------~~~~~d~lViAtG~~~~~~~~ipG~~~~gv~---~~---~~~~~~~~~ 134 (456)
T 1lqt_A 78 FFGN-VV-V---GEHVQPGE------------LSERYDAVIYAVGAQSDRMLNIPGEDLPGSI---AA---VDFVGWYNA 134 (456)
T ss_dssp EEES-CC-B---TTTBCHHH------------HHHHSSEEEECCCCCEECCCCCTTTTSTTEE---EH---HHHHHHHTT
T ss_pred EEee-EE-E---CCEEEECC------------CeEeCCEEEEeeCCCCCCCCCCCCCCCCCcE---EH---HHHHhhhhc
Confidence 7654 21 2 23343322 257899999999997 6888999974 1222 22 222221110
Q ss_pred HHhh-cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcC-----CCC--CceEEEEEeCC-CcCCCCC
Q 010845 213 NLML-SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS-----HVK--DYIHVTLIEAN-EILSSFD 283 (499)
Q Consensus 213 ~~~~-~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~-----~~~--~~~~Vtlv~~~-~~l~~~~ 283 (499)
.... ...+ ....++|+|||+|++|+|+|..|......-....++ .++ ...+|+++++. .++..|.
T Consensus 135 ~~d~~~~~~------~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~ 208 (456)
T 1lqt_A 135 HPHFEQVSP------DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFT 208 (456)
T ss_dssp CGGGTTCCC------CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCC
T ss_pred Ccccccchh------hcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccC
Confidence 0000 0111 013469999999999999999998753110000000 000 12589999986 5544332
Q ss_pred H-------------------HH------------------HHHHHHHHHh------CCCEEEeC-ceEEEeCC----eEE
Q 010845 284 D-------------------RL------------------RHYATTQLSK------SGVRLVRG-IVKDVDSQ----KLI 315 (499)
Q Consensus 284 ~-------------------~~------------------~~~~~~~l~~------~gV~v~~~-~v~~v~~~----~v~ 315 (499)
+ ++ .+.+.+.+++ +||+++.+ .+.++.++ +|.
T Consensus 209 ~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~ 288 (456)
T 1lqt_A 209 TLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIV 288 (456)
T ss_dssp HHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEE
T ss_pred hHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEE
Confidence 1 11 2344455555 79999999 89998764 366
Q ss_pred EC----------------CC--cEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEecccccccc
Q 010845 316 LN----------------DG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 377 (499)
Q Consensus 316 ~~----------------~g--~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~ 377 (499)
+. +| ++++||+||+|+|++|+++ .+++++++|+|.||+++|+.+.|+|||+|||+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~--- 362 (456)
T 1lqt_A 289 LGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPT---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKR--- 362 (456)
T ss_dssp EEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCC---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHH---
T ss_pred EEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCC---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCC---
Confidence 64 34 4699999999999999984 467788889999999999559999999999996
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 378 STGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 378 ~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+. ...+..|+.||..+|.+|...+.
T Consensus 363 --gp---~~~i~~a~~~g~~~a~~i~~~l~ 387 (456)
T 1lqt_A 363 --GP---TGVIGTNKKDAQDTVDTLIKNLG 387 (456)
T ss_dssp --CS---CSCTTHHHHHHHHHHHHHHHHHH
T ss_pred --CC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 21 22345789999999999988775
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-31 Score=270.00 Aligned_cols=301 Identities=15% Similarity=0.123 Sum_probs=189.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
+++|+|||||+||+++|..|++.| ++|+|||+++.+. ..+...+........++...+.+ .....++.++.+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g-g~~~~g~~p~~~~~~~~~~~~~~----~~~~~gv~~~~~~ 80 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF-GLVRFGVAPDHPEVKNVINTFTQ----TARSDRCAFYGNV 80 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC-THHHHTSCTTCGGGGGHHHHHHH----HHTSTTEEEEBSC
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC-ceeecccCCCCccHHHHHHHHHH----HHHhCCcEEEeee
Confidence 479999999999999999999887 9999999998763 22222111111111122222222 2334677766542
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc-cCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
.. .+.|++.+ ..+.||+||+|||+.+ +.|++||.+ +.+++ . ..+...+...-...
T Consensus 81 ~v-----~~~V~~~~------------~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~---~---~~~~~~~~~~~d~~ 137 (460)
T 1cjc_A 81 EV-----GRDVTVQE------------LQDAYHAVVLSYGAEDHQALDIPGEELPGVFS---A---RAFVGWYNGLPENR 137 (460)
T ss_dssp CB-----TTTBCHHH------------HHHHSSEEEECCCCCEECCCCCTTTTSTTEEE---H---HHHHHHHTTCGGGT
T ss_pred EE-----eeEEEecc------------ceEEcCEEEEecCcCCCCCCCCCCCCCCcEEE---H---HHHHHHhhcCcccc
Confidence 21 12233221 2478999999999995 778999974 22222 2 22211110000000
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHH-hcC-----CC-CCce-EEEEEeCC-Cc----------
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ-RYS-----HV-KDYI-HVTLIEAN-EI---------- 278 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~-~~~-----~~-~~~~-~Vtlv~~~-~~---------- 278 (499)
..+. ....++|+|||+|++|+|+|..|.+.... +.. ..+ .+ +.+. +|+++++. .+
T Consensus 138 ~~~~-----~~~~~~vvVIGgG~~g~e~A~~L~~~~~~-l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~ 211 (460)
T 1cjc_A 138 ELAP-----DLSCDTAVILGQGNVALDVARILLTPPDH-LEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELR 211 (460)
T ss_dssp TCCC-----CTTSSEEEEESCSHHHHHHHHHHHSCGGG-GTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHH
T ss_pred cccc-----CCCCCEEEEECCCHHHHHHHHHHhhchhh-hccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHH
Confidence 0000 01346999999999999999999831100 000 000 00 1124 79999986 33
Q ss_pred ----CCCC-------------------CHH---HHHHHHHHHHh--------------CCCEEEeC-ceEEEeCC-----
Q 010845 279 ----LSSF-------------------DDR---LRHYATTQLSK--------------SGVRLVRG-IVKDVDSQ----- 312 (499)
Q Consensus 279 ----l~~~-------------------~~~---~~~~~~~~l~~--------------~gV~v~~~-~v~~v~~~----- 312 (499)
+|.. +.. +.+.+.+.+++ +||+++++ .+.++.++
T Consensus 212 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~ 291 (460)
T 1cjc_A 212 EMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRR 291 (460)
T ss_dssp HHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSS
T ss_pred HhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCce
Confidence 2311 110 23334444555 89999998 78888643
Q ss_pred --eEEEC---------------CC--cEEeeeEEEEcCCCCcchhcccCCC-CCCCCCceeeCCCCCCCCCCCeEEeccc
Q 010845 313 --KLILN---------------DG--TEVPYGLLVWSTGVGPSTLVKSLDL-PKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (499)
Q Consensus 313 --~v~~~---------------~g--~~i~~D~vi~a~G~~p~~~~~~~~l-~~~~~G~i~vd~~l~~~~~~~Ifa~GD~ 372 (499)
+|.+. +| ++++||+||+++|++|+++ .++ +++++|+|.||+++||.+.|+|||+|||
T Consensus 292 v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~ 368 (460)
T 1cjc_A 292 AAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWV 368 (460)
T ss_dssp EEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCC---CTTSCCBTTTTBCCEETTEETTCTTEEECTHH
T ss_pred EEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCC---CCCcccccCCCeeECCCCcCcCCCCEEEEEeC
Confidence 25543 34 5799999999999999974 577 8888899999999999448999999999
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 373 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 373 a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+. +. ...+..|+.+|+.+|.+|...+.
T Consensus 369 ~~-----g~---~~~i~~a~~~g~~aa~~i~~~l~ 395 (460)
T 1cjc_A 369 KR-----GP---TGVITTTMTDSFLTGQILLQDLK 395 (460)
T ss_dssp HH-----CT---TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-----CC---CccHHHHHHHHHHHHHHHHHHHH
Confidence 95 21 23467899999999999998876
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=263.38 Aligned_cols=303 Identities=12% Similarity=0.091 Sum_probs=189.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC-----CeEEEEcCCCCcccccchh--hhhccC---------CCCCc---------
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHMVFTPLLA--STCVGT---------LEFRS--------- 115 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g-----~~V~lie~~~~~~~~~~~~--~~~~g~---------~~~~~--------- 115 (499)
.+++|||||||+||+++|..|++.| ++|+|||+++.+.|.+... ...... ..+..
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 3469999999999999999999998 9999999999877654211 000000 00000
Q ss_pred ----------------cccchhhhccccccCCCeEEE-EEEEEEEECC---CCE--EEEeeecCccccCCCceeeeeCCe
Q 010845 116 ----------------VAEPIARIQPAISREPGSYFF-LSHCAGIDTD---NHV--VHCETVTDELRTLEPWKFKISYDK 173 (499)
Q Consensus 116 ----------------~~~~~~~~~~~~~~~~~~~~~-~~~v~~id~~---~~~--v~~~~~~~~~~~~~~~~~~i~yd~ 173 (499)
....+.++...+....++.+. ..+|+.|+.+ .+. +.+...+ + .++..++.||+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~-g----~g~~~~~~~d~ 183 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRN-A----DGEELVRTTRA 183 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEE-T----TSCEEEEEESE
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEec-C----CCceEEEEeCE
Confidence 001111222122222233333 4678898876 442 2333211 1 02234799999
Q ss_pred EEEcCCCCccCCC-CCCccc--cCccCCCHHHH-HHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHH
Q 010845 174 LVIALGAEASTFG-IHGVKE--NATFLREVHHA-QEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249 (499)
Q Consensus 174 LViAtG~~~~~~~-ipG~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l 249 (499)
||+|||+.|..|+ +++... ..++...+.+. ..+. ....+.++|+|||||.+|+|+|.+|
T Consensus 184 lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~vvVvGgG~sg~e~a~~l 246 (463)
T 3s5w_A 184 LVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQP-----------------CSSGKPMKIAIIGGGQSAAEAFIDL 246 (463)
T ss_dssp EEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC------------------------CEEEEEECCSHHHHHHHHHH
T ss_pred EEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhh-----------------hcccCCCeEEEECCCHhHHHHHHHH
Confidence 9999999877665 233322 22333222211 1110 0011346999999999999999999
Q ss_pred HHH--HHHHHHHhcCCCCCceEEEEEeCC-CcCCC--------------------CCHHHHHHHHHHHHh----------
Q 010845 250 SDF--IMRDVRQRYSHVKDYIHVTLIEAN-EILSS--------------------FDDRLRHYATTQLSK---------- 296 (499)
Q Consensus 250 ~~~--~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~--------------------~~~~~~~~~~~~l~~---------- 296 (499)
.+. + .+|+++++. .++|. +++.....+.+.+..
T Consensus 247 ~~~~~~--------------~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 312 (463)
T 3s5w_A 247 NDSYPS--------------VQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDL 312 (463)
T ss_dssp HHHCTT--------------EEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHH
T ss_pred HhcCCC--------------CeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHH
Confidence 987 4 899999987 45442 223333333333322
Q ss_pred ----------------CCCEEEeC-ceEEEeCC--e--EEEC---CCc--EEeeeEEEEcCCCCcc---hhcccCCCCCC
Q 010845 297 ----------------SGVRLVRG-IVKDVDSQ--K--LILN---DGT--EVPYGLLVWSTGVGPS---TLVKSLDLPKS 347 (499)
Q Consensus 297 ----------------~gV~v~~~-~v~~v~~~--~--v~~~---~g~--~i~~D~vi~a~G~~p~---~~~~~~~l~~~ 347 (499)
.||+++.+ .|++++.+ . +.+. +|+ ++++|.||+|||++|+ +++..+....
T Consensus 313 ~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~- 391 (463)
T 3s5w_A 313 IERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL- 391 (463)
T ss_dssp HHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB-
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh-
Confidence 69999999 78888653 2 5555 665 4999999999999998 4555543322
Q ss_pred CCCceeeCCCCCCCC----CCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 348 PGGRIGIDEWLRVPS----VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~----~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
|++.||+++|+.. .|+|||+|||....+. ..|.....|.+++++++..+.+..
T Consensus 392 --g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~----~~~~l~~~a~r~~~i~~~~~~~~~ 448 (463)
T 3s5w_A 392 --GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGL----SDTLLSVLPVRAEEISGSLYQHLK 448 (463)
T ss_dssp --C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCT----TTTSSTTHHHHHHHHHHHHHHHHC
T ss_pred --CCcccCcccccccCCCCCCeEEEcCCCcccCCc----CccchhHHHHHHHHHHHHHHhhcC
Confidence 7899999999854 4569999999875432 336778889999999887766554
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-30 Score=262.66 Aligned_cols=279 Identities=14% Similarity=0.077 Sum_probs=181.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCcccccchhhh----------------------------hccC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFTPLLAST----------------------------CVGT 110 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~~~~~~~----------------------------~~g~ 110 (499)
..++|+|||||++|+++|..|++.|. +|+|||+++........... ....
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 35799999999999999999999999 99999998644211110000 0000
Q ss_pred ---C--------------C-CCc--c---ccchhhhccccccCCCe-EEEEEEEEEEECCCCEEEEeeecCccccCCCc-
Q 010845 111 ---L--------------E-FRS--V---AEPIARIQPAISREPGS-YFFLSHCAGIDTDNHVVHCETVTDELRTLEPW- 165 (499)
Q Consensus 111 ---~--------------~-~~~--~---~~~~~~~~~~~~~~~~~-~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~- 165 (499)
+ . ... . ...+.++...+....+. ....++|+.++...+.+.+...+.. .++
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~----~G~~ 160 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTK----AGSP 160 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESS----TTCC
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecC----CCCe
Confidence 0 0 000 0 00111111111111111 2235789999877664444331100 011
Q ss_pred eeeeeCCeEEEcCCC--CccCCCCCCcccc-------CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEe
Q 010845 166 KFKISYDKLVIALGA--EASTFGIHGVKEN-------ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (499)
Q Consensus 166 ~~~i~yd~LViAtG~--~~~~~~ipG~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVv 236 (499)
..++.||+||+|||. .|+.|.+||+++. .++.+++.+ ......++|+||
T Consensus 161 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~----------------------~~~~~~k~VvVv 218 (447)
T 2gv8_A 161 ISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFRE----------------------PELFVGESVLVV 218 (447)
T ss_dssp EEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCC----------------------GGGGTTCCEEEE
T ss_pred eEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCC----------------------hhhcCCCEEEEE
Confidence 236899999999998 7888899997531 222111111 011234699999
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe--CCe
Q 010845 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD--SQK 313 (499)
Q Consensus 237 GgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~--~~~ 313 (499)
|+|++|+|+|.+|+..+ .+ |+++++...+ ++..||++. ..|++++ +++
T Consensus 219 G~G~sg~e~A~~l~~~~--------------~~~V~l~~r~~~~--------------l~~~~i~~~-~~v~~~~~~~~~ 269 (447)
T 2gv8_A 219 GGASSANDLVRHLTPVA--------------KHPIYQSLLGGGD--------------IQNESLQQV-PEITKFDPTTRE 269 (447)
T ss_dssp CSSHHHHHHHHHHTTTS--------------CSSEEEECTTCCS--------------CBCSSEEEE-CCEEEEETTTTE
T ss_pred ccCcCHHHHHHHHHHHh--------------CCcEEEEeCCCCc--------------CCCCCeEEe-cCeEEEecCCCE
Confidence 99999999999998876 77 9999987422 455677742 3788884 458
Q ss_pred EEECCCcE-EeeeEEEEcCCCCcc-hh-----cccCCCCCCCCCceeeCCCCCC--CCCCCeEEeccccccccCCCCCCC
Q 010845 314 LILNDGTE-VPYGLLVWSTGVGPS-TL-----VKSLDLPKSPGGRIGIDEWLRV--PSVQDVFAVGDCSGYLESTGKTVL 384 (499)
Q Consensus 314 v~~~~g~~-i~~D~vi~a~G~~p~-~~-----~~~~~l~~~~~G~i~vd~~l~~--~~~~~Ifa~GD~a~~~~~~g~~~~ 384 (499)
|+++||++ +++|.||+|||++|+ ++ +..++..+..++.+.++.+.++ .+.|+||++||+..
T Consensus 270 v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~---------- 339 (447)
T 2gv8_A 270 IYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALH---------- 339 (447)
T ss_dssp EEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBS----------
T ss_pred EEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEecccc----------
Confidence 99999986 799999999999999 67 6654322233455666655553 48999999999984
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 010845 385 PALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 385 p~~~~~A~~~g~~aa~~i~~ 404 (499)
..+++.|..||+++|++|..
T Consensus 340 ~~~~~~a~~qa~~~a~~~~g 359 (447)
T 2gv8_A 340 VVPFPTSQAQAAFLARVWSG 359 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHTT
T ss_pred ccCchHHHHHHHHHHHHHcC
Confidence 23788999999999999864
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-30 Score=277.87 Aligned_cols=274 Identities=15% Similarity=0.172 Sum_probs=184.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhcccc--ccCCCeEEEE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAI--SREPGSYFFL 137 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 137 (499)
..+++|+|||||+|||++|..|++.|++|+|||+++.+...........+..........+......+ ....++.
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~--- 463 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQL--- 463 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEE---
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceE---
Confidence 34689999999999999999999999999999998876544222211112111111111111111111 0001222
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCC--------ccCCCCCCccccCccCCCHHHHHHHHHH
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--------ASTFGIHGVKENATFLREVHHAQEIRRK 209 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~--------~~~~~ipG~~~~~~~~~~~~~~~~~~~~ 209 (499)
++. ++.+++++ ...+.||+||||||+. |..|++||.+++...+.+..+...
T Consensus 464 -----i~~-~~~v~~~~-----------~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~---- 522 (729)
T 1o94_A 464 -----ALG-QKPMTADD-----------VLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMD---- 522 (729)
T ss_dssp -----ECS-CCCCCHHH-----------HHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHH----
T ss_pred -----EEe-CeEEehhh-----------ccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhc----
Confidence 222 22333222 1357899999999998 456788997532212223333211
Q ss_pred HHHHHhhcCCCCCCHHHHhccccEEEeC--cChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC--CCCHH
Q 010845 210 LLLNLMLSDVPGISEEEKSRLLHCVVVG--GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--SFDDR 285 (499)
Q Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~vvVvG--gG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~--~~~~~ 285 (499)
. .. ...++|+||| ||++|+|+|..|++.+ .+|+++++.++++ .++..
T Consensus 523 ------~-~~--------~~gk~VvVIG~GgG~~g~e~A~~l~~~G--------------~~Vtlv~~~~l~~~~~~~~~ 573 (729)
T 1o94_A 523 ------G-KK--------KIGKRVVILNADTYFMAPSLAEKLATAG--------------HEVTIVSGVHLANYMHFTLE 573 (729)
T ss_dssp ------C-CS--------CCCSEEEEEECCCSSHHHHHHHHHHHTT--------------CEEEEEESSCTTHHHHHTTC
T ss_pred ------C-CC--------CCCCeEEEEcCCCCchHHHHHHHHHHcC--------------CEEEEEeccccccccccccc
Confidence 0 01 2246999999 9999999999999887 8999999876332 12323
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEEC----CC-cE------------------EeeeEEEEcCCCCcch-hcc
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVDSQKLILN----DG-TE------------------VPYGLLVWSTGVGPST-LVK 340 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~----~g-~~------------------i~~D~vi~a~G~~p~~-~~~ 340 (499)
...+.+.|++.||+++++ +|.+++++++.+. ++ ++ +++|.||+|+|++|+. ++.
T Consensus 574 -~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~ 652 (729)
T 1o94_A 574 -YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN 652 (729)
T ss_dssp -HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHH
T ss_pred -HHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHH
Confidence 456778889999999999 8999998876542 33 33 9999999999999994 554
Q ss_pred cCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 341 ~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
.++ ..+|+++|| +.|+|||+|||+. +.++..|++||+.+|.+|...+
T Consensus 653 ~l~--------~~vd~~~~t-~~~~VyAiGD~~~----------~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 653 ELK--------ARESEWAEN-DIKGIYLIGDAEA----------PRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp HHH--------HTGGGTGGG-TCCEEEECGGGTS----------CCCHHHHHHHHHHHHHTTTSSC
T ss_pred HHh--------hhccccccc-CCCCeEEEeCccc----------hhhHHHHHHHHHHHHHHhhhhc
Confidence 432 136889998 8999999999995 5668889999999999986554
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-31 Score=282.07 Aligned_cols=268 Identities=16% Similarity=0.127 Sum_probs=189.3
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
..+++|||||||+|||++|+.|++.|++|+|||+++.+...........+......+...+... +....++.+..++
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~gv~~~~~~ 465 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAV---LAELPNVEIYRES 465 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHH---HHTCTTEEEESSC
T ss_pred cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHH---HHHcCCCEEEECC
Confidence 4568999999999999999999999999999999987766544433333332222222222222 2222355554321
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc--------cCCCCCCccccCccCCCHHHHHHHHHHHH
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA--------STFGIHGVKENATFLREVHHAQEIRRKLL 211 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~--------~~~~ipG~~~~~~~~~~~~~~~~~~~~~~ 211 (499)
.+..++ ..++.||+||+|||+.+ ..|.+||.+.. .+.+..+..
T Consensus 466 ---------~v~~~~-----------~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~--~v~~~~~~l------- 516 (690)
T 3k30_A 466 ---------PMTGDD-----------IVEFGFEHVITATGATWRTDGVARFHTTALPIAEGM--QVLGPDDLF------- 516 (690)
T ss_dssp ---------CCCHHH-----------HHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTS--EEECHHHHH-------
T ss_pred ---------eecHHH-----------HhhcCCCEEEEcCCCccccccccccCCCCCCCCCCC--cEEcHHHHh-------
Confidence 121111 13678999999999984 46778887431 111222211
Q ss_pred HHHhhcCCCCCCHHHHhccccEEEeC--cChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCC-HHHH
Q 010845 212 LNLMLSDVPGISEEEKSRLLHCVVVG--GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLR 287 (499)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvVvG--gG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~-~~~~ 287 (499)
.. .. ...++|+||| +|.+|+|+|..|.+.+ .+|+++++. .+++... +...
T Consensus 517 ---~~-~~--------~~g~~VvViG~ggG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~l~~~~~~~~~~ 570 (690)
T 3k30_A 517 ---AG-RL--------PDGKKVVVYDDDHYYLGGVVAELLAQKG--------------YEVSIVTPGAQVSSWTNNTFEV 570 (690)
T ss_dssp ---TT-CC--------CSSSEEEEEECSCSSHHHHHHHHHHHTT--------------CEEEEEESSSSTTGGGGGGTCH
T ss_pred ---CC-CC--------CCCCEEEEEcCCCCccHHHHHHHHHhCC--------------CeeEEEecccccccccccchhH
Confidence 10 11 2345899999 9999999999999887 899999987 4555433 5567
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeCCeEEEC-----CCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCC
Q 010845 288 HYATTQLSKSGVRLVRG-IVKDVDSQKLILN-----DGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRV 360 (499)
Q Consensus 288 ~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~ 360 (499)
..+.+.|++.||+++++ +|.+++++++.+. +++++++|.||+|+|++|+. +...++. .+. ++
T Consensus 571 ~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~----~~~-------~t 639 (690)
T 3k30_A 571 NRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVA----RRD-------AG 639 (690)
T ss_dssp HHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHH----HHH-------HT
T ss_pred HHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhh----hhc-------cc
Confidence 78888999999999999 8999999876653 45689999999999999994 4444321 111 55
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.|+|||+|||+. ++.+..|++||+.+|.||...+.
T Consensus 640 -~~~~VyaiGD~~~----------~~~~~~A~~~g~~aa~~i~~~l~ 675 (690)
T 3k30_A 640 -EIASVRGIGDAWA----------PGTIAAAVWSGRRAAEEFDAVLP 675 (690)
T ss_dssp -SCSEEEECGGGTS----------CBCHHHHHHHHHHHHHHTTCCCC
T ss_pred -CCCCEEEEeCCCc----------hhhHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999995 56677899999999999987654
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=279.53 Aligned_cols=286 Identities=17% Similarity=0.182 Sum_probs=195.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++|||||||+||++||..|++.|++|+|||+++.+..+.. . .....+...........+...+....++.++. .+|
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~-~-~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V 205 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL-D-TAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTV 205 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG-G-SSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec-c-CCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence 46899999999999999999999999999999887653332 1 00000111000111122222233334677664 488
Q ss_pred EEEECCCCEEEEeeecCccccC------CCceeeeeCCeEEEcCCCCccCCCCCCccc-cCccCCCHHHHHHHHHHHHHH
Q 010845 141 AGIDTDNHVVHCETVTDELRTL------EPWKFKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~------~~~~~~i~yd~LViAtG~~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~ 213 (499)
.+++.+.....++...+..... .+....+.||+||||||+.|+.|++||.+. .++. ..+...+ +. .
T Consensus 206 ~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~---~~~~~~~---l~-~ 278 (965)
T 2gag_A 206 FGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIML---AGAVRSY---LN-R 278 (965)
T ss_dssp EEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEE---HHHHHHH---HH-T
T ss_pred EeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEE---hHHHHHH---HH-h
Confidence 8888765443333211100000 011247899999999999999999999753 2222 2222111 10 0
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCCCHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~~~~~~~~~~~ 292 (499)
... ...++|+|||+|++|+|+|..|.+.+ .+|+++++.+ +++ . .+
T Consensus 279 --~~~---------~~gk~vvViGgG~~g~E~A~~L~~~G--------------~~Vtvv~~~~~~~~----~-----~~ 324 (965)
T 2gag_A 279 --YGV---------RAGARIAVATTNDSAYELVRELAATG--------------GVVAVIDARSSISA----A-----AA 324 (965)
T ss_dssp --TCE---------ESCSSEEEEESSTTHHHHHHHHGGGT--------------CCSEEEESCSSCCH----H-----HH
T ss_pred --cCC---------CCCCeEEEEcCCHHHHHHHHHHHHcC--------------CcEEEEECCCccch----h-----HH
Confidence 011 12369999999999999999999887 7899999874 432 2 56
Q ss_pred HHHhCCCEEEeC-ceEEEeC--C----eEEECC-------C--cEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeC
Q 010845 293 QLSKSGVRLVRG-IVKDVDS--Q----KLILND-------G--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGID 355 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~--~----~v~~~~-------g--~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd 355 (499)
.+++.||+++++ .|.+++. + +|++.+ | ++++||.||+++|++|+. ++... +|.|.||
T Consensus 325 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~------~g~i~vd 398 (965)
T 2gag_A 325 QAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR------QGKLDWD 398 (965)
T ss_dssp HHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT------TCCEEEE
T ss_pred HHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC------CCcEEEc
Confidence 688999999999 8999875 3 577764 4 689999999999999994 54432 4679999
Q ss_pred CCCC-----CCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 356 EWLR-----VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 356 ~~l~-----~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
++++ + +.|+|||+|||+.. +.. ..|..||+.+|.+|...+.
T Consensus 399 ~~~~~~v~~t-s~p~IyAaGD~a~~---------~~l-~~A~~~G~~aA~~i~~~lg 444 (965)
T 2gag_A 399 TTIHAFVPAD-AVANQHLAGAMTGR---------LDT-ASALSTGAATGAAAATAAG 444 (965)
T ss_dssp TTTTEEEECS-CCTTEEECGGGGTC---------CSH-HHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccCC-CCCCEEEEEecCCc---------hhH-HHHHHHHHHHHHHHHHHcC
Confidence 9887 5 89999999999952 333 4899999999999988764
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=257.53 Aligned_cols=257 Identities=16% Similarity=0.149 Sum_probs=183.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhh-hccCCCCCccccchhhhccccccCCCeEE-EEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST-CVGTLEFRSVAEPIARIQPAISREPGSYF-FLSH 139 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 139 (499)
+++|||||||+||+++|.+|++. ++|+|||+++++.+....... ..+. .. .....+..+...+ ..++.+ ...+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~-~~-~~~~~~~~l~~~l--~~~v~~~~~~~ 182 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGF-NK-DSRKVVEELVGKL--NENTKIYLETS 182 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTT-TE-EHHHHHHHHHHTC--CTTEEEETTEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCC-CC-CHHHHHHHHHHHH--hcCCEEEcCCE
Confidence 46899999999999999999999 999999999877655322110 1110 00 1111112222223 356665 3468
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
|.+++.+.+.+.+...+++ +...+.||+||+|||+.+..|++||.+. .++ +..++..+.+. + ..
T Consensus 183 v~~i~~~~~~~~~~~~~~~------~~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~---~~~~~~~~~~~----~--~~ 247 (493)
T 1y56_A 183 ALGVFDKGEYFLVPVVRGD------KLIEILAKRVVLATGAIDSTMLFENNDMPGVF---RRDFALEVMNV----W--EV 247 (493)
T ss_dssp ECCCEECSSSEEEEEEETT------EEEEEEESCEEECCCEEECCCCCTTTTSTTEE---EHHHHHHHHHT----S--CB
T ss_pred EEEEEcCCcEEEEEEecCC------eEEEEECCEEEECCCCCccCCCCCCCCCCCEE---EcHHHHHHHHh----c--cc
Confidence 8888887775554332111 1247899999999999999999999752 232 23333322211 0 01
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCC
Q 010845 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~g 298 (499)
...++++|||+|++|+| +.+++.|
T Consensus 248 ---------~~~~~vvViGgG~~gle-----------------------------------------------~~l~~~G 271 (493)
T 1y56_A 248 ---------APGRKVAVTGSKADEVI-----------------------------------------------QELERWG 271 (493)
T ss_dssp ---------CSCSEEEEESTTHHHHH-----------------------------------------------HHHHHHT
T ss_pred ---------CCCCEEEEECCCHHHHH-----------------------------------------------HHHHhCC
Confidence 12369999999999987 2355679
Q ss_pred CEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCC--CCCCcee-eCCCCCCCCCCCeEEe
Q 010845 299 VRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPK--SPGGRIG-IDEWLRVPSVQDVFAV 369 (499)
Q Consensus 299 V~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~--~~~G~i~-vd~~l~~~~~~~Ifa~ 369 (499)
|+++++ .|.+++.+ .+.+++|+++++|.||+|+|.+|+. +++.+++++ +++|+|. ||+++| +.|+|||+
T Consensus 272 V~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~--s~~~vya~ 349 (493)
T 1y56_A 272 IDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR--IKDGIYVA 349 (493)
T ss_dssp CEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE--EETTEEEC
T ss_pred cEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC--cCCCEEEE
Confidence 999999 89999764 4778889999999999999999994 888888765 4678887 899999 78999999
Q ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 370 GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 370 GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
|||+. +..+..|..||+.+|.+|...+
T Consensus 350 GD~~~----------~~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 350 GSAVS----------IKPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp STTTC----------CCCHHHHHHHHHHHHHHHHHHT
T ss_pred eccCC----------ccCHHHHHHHHHHHHHHHHHHc
Confidence 99995 3468899999999999998765
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=256.75 Aligned_cols=291 Identities=13% Similarity=0.123 Sum_probs=189.5
Q ss_pred CCcEEEECCchHHHHHHHhcc-CCCCeEEEEcCCCCcccccchh---hh----hccCC------------CCCcc---cc
Q 010845 62 KPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMVFTPLLA---ST----CVGTL------------EFRSV---AE 118 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~-~~g~~V~lie~~~~~~~~~~~~---~~----~~g~~------------~~~~~---~~ 118 (499)
+.+|+|||||+||+++|..|+ +.|++|+|||+++......... .. ..... ..... ..
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP 87 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence 469999999999999999999 9999999999987543221100 00 00000 00000 00
Q ss_pred chhhhccccccCCCe---EEEEEEEEEEECCCC--EEEEeeecCccccCCCceeeeeCCeEEEcCC--CCccCCCCCCcc
Q 010845 119 PIARIQPAISREPGS---YFFLSHCAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (499)
Q Consensus 119 ~~~~~~~~~~~~~~~---~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG--~~~~~~~ipG~~ 191 (499)
.+..+........++ .....+|++++.+++ .+++... ++ .++.||+||+||| +.|..|++||++
T Consensus 88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~-~G--------~~i~ad~lV~AtG~~s~p~~p~ipG~~ 158 (540)
T 3gwf_A 88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTD-HG--------EVYRAKYVVNAVGLLSAINFPNLPGLD 158 (540)
T ss_dssp HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEET-TS--------CEEEEEEEEECCCSCCSBCCCCCTTGG
T ss_pred HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEc-CC--------CEEEeCEEEECCcccccCCCCCCCCcc
Confidence 111111111111222 233467888876655 5544431 12 3789999999999 689999999986
Q ss_pred cc---CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010845 192 EN---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 192 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
+. .++.....+ ......++|+|||+|.+|+|+|.+|++.+ .
T Consensus 159 ~f~g~~~~~~~~~~----------------------~~~~~~krV~VIG~G~sgve~a~~l~~~~--------------~ 202 (540)
T 3gwf_A 159 TFEGETIHTAAWPE----------------------GKSLAGRRVGVIGTGSTGQQVITSLAPEV--------------E 202 (540)
T ss_dssp GCCSEEEEGGGCCS----------------------SCCCTTSEEEEECCSHHHHHHHHHHTTTC--------------S
T ss_pred ccCCCEEEeecCCC----------------------ccccccceEEEECCCchHHHHHHHHHhhC--------------C
Confidence 42 111111100 01123469999999999999999998876 8
Q ss_pred EEEEEeCC-C-cCCCCCH----HHHHHHH---------------------------------------------------
Q 010845 269 HVTLIEAN-E-ILSSFDD----RLRHYAT--------------------------------------------------- 291 (499)
Q Consensus 269 ~Vtlv~~~-~-~l~~~~~----~~~~~~~--------------------------------------------------- 291 (499)
+||++++. . ++|.+++ ...+.+.
T Consensus 203 ~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~ 282 (540)
T 3gwf_A 203 HLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFM 282 (540)
T ss_dssp EEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred EEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhh
Confidence 99999987 4 4554332 2211111
Q ss_pred ----------------------H---------------------------------HHHhCCCEEEe---CceEEEeCCe
Q 010845 292 ----------------------T---------------------------------QLSKSGVRLVR---GIVKDVDSQK 313 (499)
Q Consensus 292 ----------------------~---------------------------------~l~~~gV~v~~---~~v~~v~~~~ 313 (499)
+ .|.+.+|+++. ..|+++++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g 362 (540)
T 3gwf_A 283 FGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG 362 (540)
T ss_dssp HTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE
T ss_pred hhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe
Confidence 0 01145899994 4899999999
Q ss_pred EEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCC---------ceeeCCCCCCCCCCCeEEe-ccccccccCCCCC
Q 010845 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG---------RIGIDEWLRVPSVQDVFAV-GDCSGYLESTGKT 382 (499)
Q Consensus 314 v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G---------~i~vd~~l~~~~~~~Ifa~-GD~a~~~~~~g~~ 382 (499)
|+++||+++++|+||+|||+.++. ++..+++. ..+| .......+.++++||+|++ |..+.
T Consensus 363 v~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~-g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~-------- 433 (540)
T 3gwf_A 363 VVTEDGVLHELDVLVFATGFDAVDGNYRRIEIR-GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGP-------- 433 (540)
T ss_dssp EEETTCCEEECSEEEECCCBSCSSHHHHTSEEE-CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCB--------
T ss_pred EEcCCCCEEECCEEEECCccCccccCcCcceEE-CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCC--------
Confidence 999999999999999999999985 55443321 1122 1223333667899999999 87763
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 383 VLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 383 ~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.......+..|++++++.|....+
T Consensus 434 -~~s~~~~~e~q~~~i~~~i~~~~~ 457 (540)
T 3gwf_A 434 -FTNLPPSIETQVEWISDTIGYAER 457 (540)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHHHHHHHHH
Confidence 245567899999999999987765
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=262.30 Aligned_cols=269 Identities=19% Similarity=0.205 Sum_probs=185.9
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
..+++|||||||+||+++|..|++.|++|+|||+++.+.+...+.....+..... ..+..+...+. ..+++++.++
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~gv~~~~~~ 446 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFY---ETLRYYRRMIE-VTGVTLKLNH 446 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHH---HHHHHHHHHHH-HHTCEEEESC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHH---HHHHHHHHHHH-HcCCEEEeCc
Confidence 3468999999999999999999999999999999988776654433322221111 11111111122 2355555433
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeee-eCCeEEEcCCCCccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKI-SYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i-~yd~LViAtG~~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
.. . . ..+ .||+||||||+.|+.|++||.+. .+++ ..+. +...
T Consensus 447 ~v---------~--~------------~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~---~~~~----------l~~~ 490 (671)
T 1ps9_A 447 TV---------T--A------------DQLQAFDETILASGIVPRTPPIDGIDHPKVLS---YLDV----------LRDK 490 (671)
T ss_dssp CC---------C--S------------SSSCCSSEEEECCCEEECCCCCBTTTSTTEEE---HHHH----------HTSC
T ss_pred Ee---------c--H------------HHhhcCCEEEEccCCCcCCCCCCCCCCCcEee---HHHH----------hhCC
Confidence 11 0 0 134 89999999999999999999753 2222 2111 1111
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHH------HHHHh----------------cCCC-CCceEEEEEe
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR------DVRQR----------------YSHV-KDYIHVTLIE 274 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~------~~~~~----------------~~~~-~~~~~Vtlv~ 274 (499)
. ...++|+|||||++|+|+|..|++.+.+ .+.+. +|.. .+..+|++++
T Consensus 491 ~---------~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 561 (671)
T 1ps9_A 491 A---------PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQ 561 (671)
T ss_dssp C---------CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEEC
T ss_pred C---------CCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEE
Confidence 1 2346999999999999999999875421 11111 1111 1236899998
Q ss_pred CC-CcC-CCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEE-CCC--cEEeeeEEEEcCCCCcch-hcccCCCCCC
Q 010845 275 AN-EIL-SSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLIL-NDG--TEVPYGLLVWSTGVGPST-LVKSLDLPKS 347 (499)
Q Consensus 275 ~~-~~l-~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~-~~g--~~i~~D~vi~a~G~~p~~-~~~~~~l~~~ 347 (499)
+. ..+ ..+++.....+.+.|++.||+++++ +|++++++++.+ .+| +++++|.||+|+|++|+. ++..+
T Consensus 562 ~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l----- 636 (671)
T 1ps9_A 562 RKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQPL----- 636 (671)
T ss_dssp SSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHHH-----
T ss_pred ecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHHH-----
Confidence 85 333 4567777888889999999999999 899999988877 677 579999999999999984 44332
Q ss_pred CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 010845 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i 402 (499)
+. ..++||++|||+.. .++.++.|++||..+|.||
T Consensus 637 -----------~~-~g~~v~aiGD~~~~--------~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 637 -----------ID-SGKTVHLIGGCDVA--------MELDARRAIAQGTRLALEI 671 (671)
T ss_dssp -----------HT-TTCCEEECGGGTCC--------SSCCHHHHHHHHHHHHHHC
T ss_pred -----------Hh-cCCCEEEECCcCcc--------CchhHHHHHHHHHHHHHhC
Confidence 11 23689999999963 2446999999999999885
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=248.85 Aligned_cols=299 Identities=12% Similarity=0.126 Sum_probs=181.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhh----------------c----------cCCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC----------------V----------GTLEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~----------------~----------g~~~~~ 114 (499)
.+++|||||||+||+++|..|++.|++|+|||+++.+........+. . ......
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ 87 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP 87 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence 35799999999999999999999999999999987543221100000 0 000111
Q ss_pred ccccchhhhccccccCCCeEEEEEEEEEEECCCC--EEEEeeecCccccCCCceeeeeCCeEEEcCC--CCccCCCCCCc
Q 010845 115 SVAEPIARIQPAISREPGSYFFLSHCAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGV 190 (499)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG--~~~~~~~ipG~ 190 (499)
++...+......+.....+ ....+|++++.++. .+.+... ++ .++.||+||+||| +.|+.|++||+
T Consensus 88 ei~~yl~~~~~~~~l~~~i-~~~~~V~~~~~~~~~~~w~V~~~-~G--------~~~~ad~lV~AtG~~s~p~~p~ipG~ 157 (545)
T 3uox_A 88 EMLRYVNRAADAMDVRKHY-RFNTRVTAARYVENDRLWEVTLD-NE--------EVVTCRFLISATGPLSASRMPDIKGI 157 (545)
T ss_dssp HHHHHHHHHHHHHTCGGGE-ECSCCEEEEEEEGGGTEEEEEET-TT--------EEEEEEEEEECCCSCBC---CCCTTG
T ss_pred HHHHHHHHHHHHcCCcCcE-EECCEEEEEEEeCCCCEEEEEEC-CC--------CEEEeCEEEECcCCCCCCcCCCCCCc
Confidence 1122222222111111122 23457777765443 4444431 12 4799999999999 88999999998
Q ss_pred cccC---ccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010845 191 KENA---TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 191 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
++.. ++.....+ .....+ .......++|+|||+|++|+|+|.+|++.+
T Consensus 158 ~~f~g~~~h~~~~~~------------~~~~~~---~~~~~~~krV~VIG~G~tgve~a~~la~~~-------------- 208 (545)
T 3uox_A 158 DSFKGESFHSSRWPT------------DAEGAP---KGVDFTGKRVGVIGTGATGVQIIPIAAETA-------------- 208 (545)
T ss_dssp GGCCSEEEEGGGCCB------------CTTSCB---SCCCCBTCEEEEECCSHHHHHHHHHHTTTB--------------
T ss_pred cccCCCeEEcccccc------------cccccc---cccccCCCeEEEECCCccHHHHHHHHHhhC--------------
Confidence 6421 11110000 000000 001124579999999999999999998876
Q ss_pred eEEEEEeCC-C-cCCCCC----HHHHHHH---------------------------------------------------
Q 010845 268 IHVTLIEAN-E-ILSSFD----DRLRHYA--------------------------------------------------- 290 (499)
Q Consensus 268 ~~Vtlv~~~-~-~l~~~~----~~~~~~~--------------------------------------------------- 290 (499)
.+||++++. . ++|..+ +...+.+
T Consensus 209 ~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~ 288 (545)
T 3uox_A 209 KELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIW 288 (545)
T ss_dssp SEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHH
T ss_pred CEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHH
Confidence 899999987 3 454332 1111111
Q ss_pred --------------------------------------------------------HHHHHhCCCEEEe---CceEEEeC
Q 010845 291 --------------------------------------------------------TTQLSKSGVRLVR---GIVKDVDS 311 (499)
Q Consensus 291 --------------------------------------------------------~~~l~~~gV~v~~---~~v~~v~~ 311 (499)
.+.|.+.||+++. ..|++|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~ 368 (545)
T 3uox_A 289 LSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTP 368 (545)
T ss_dssp HTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEET
T ss_pred HhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEcc
Confidence 1112234889984 48999999
Q ss_pred CeEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCC----------CCCCCCCCCeEEeccccccccCCC
Q 010845 312 QKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDE----------WLRVPSVQDVFAVGDCSGYLESTG 380 (499)
Q Consensus 312 ~~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~----------~l~~~~~~~Ifa~GD~a~~~~~~g 380 (499)
++|+++|| ++++|+||+|||+.+++ ++..+++ ...+| ..+++ .+.++++||+|.+.--..
T Consensus 369 ~gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i-~g~~G-~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~------ 439 (545)
T 3uox_A 369 EGIKTADA-AYDLDVIIYATGFDAVTGSLDRIDI-RGKDN-VRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHN------ 439 (545)
T ss_dssp TEEEESSC-EEECSEEEECCCCBSSSCSCTTSEE-ECGGG-CBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGG------
T ss_pred CeEEeCCC-eeecCEEEECCccccccccCCCceE-ECCCC-ccHHHhhccccceeeccccCCCCcEEEEeCCCC------
Confidence 99999999 99999999999999863 3322221 12233 23322 245678999999843221
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 381 KTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 381 ~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
..........+..|++++++.|....+
T Consensus 440 ~~~~~s~~~~~e~~~~~i~~~i~~~~~ 466 (545)
T 3uox_A 440 GSTFCNVGVCGGLQAEWVLRMISYMKD 466 (545)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 012356678899999999999987766
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=248.13 Aligned_cols=291 Identities=15% Similarity=0.158 Sum_probs=184.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh---hhhc----cC-------------------CCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---STCV----GT-------------------LEFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~---~~~~----g~-------------------~~~~~ 115 (499)
+++|||||||+||+++|..|++.|++|+|||+++.+....... .... .. ....+
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e 100 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE 100 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence 4799999999999999999999999999999976543221100 0000 00 00011
Q ss_pred cccchhhhccccccCCCeEEEEEEEEEEECCCC--EEEEeeecCccccCCCceeeeeCCeEEEcCC--CCccCCCCCCcc
Q 010845 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (499)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG--~~~~~~~ipG~~ 191 (499)
+...+......+.....+ ....+|++++.+++ .+++... ++ .++.||+||+||| +.|..|.+||++
T Consensus 101 i~~yl~~~~~~~g~~~~i-~~~~~V~~i~~~~~~~~w~V~~~-~G--------~~i~ad~lV~AtG~~s~p~~p~ipG~~ 170 (549)
T 4ap3_A 101 ILAYLEHVADRFDLRRDI-RFDTRVTSAVLDEEGLRWTVRTD-RG--------DEVSARFLVVAAGPLSNANTPAFDGLD 170 (549)
T ss_dssp HHHHHHHHHHHTTCGGGE-ECSCCEEEEEEETTTTEEEEEET-TC--------CEEEEEEEEECCCSEEECCCCCCTTGG
T ss_pred HHHHHHHHHHHcCCCccE-EECCEEEEEEEcCCCCEEEEEEC-CC--------CEEEeCEEEECcCCCCCCCCCCCCCcc
Confidence 111222221111100122 23457888876555 4444431 12 3699999999999 789999999986
Q ss_pred cc---CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010845 192 EN---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 192 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
+. .++...+.+ .......++|+|||+|.+|+|+|.+|++.+ .
T Consensus 171 ~f~g~~~~~~~~~~---------------------~~~~~~~krV~VIG~G~sgve~a~~l~~~~--------------~ 215 (549)
T 4ap3_A 171 RFTGDIVHTARWPH---------------------DGVDFTGKRVGVIGTGSSGIQSIPIIAEQA--------------E 215 (549)
T ss_dssp GCCSEEEEGGGCCT---------------------TCCCCBTCEEEEECCSHHHHHHHHHHHHHB--------------S
T ss_pred cCCCceEEeccccc---------------------cccccCCCEEEEECCCchHHHHHHHHHhhC--------------C
Confidence 42 122111100 000123469999999999999999999876 8
Q ss_pred EEEEEeCC-C-cCCCCCHHHHHHHH-------------------------------------------------------
Q 010845 269 HVTLIEAN-E-ILSSFDDRLRHYAT------------------------------------------------------- 291 (499)
Q Consensus 269 ~Vtlv~~~-~-~l~~~~~~~~~~~~------------------------------------------------------- 291 (499)
+||++++. . ++|..++++.....
T Consensus 216 ~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~ 295 (549)
T 4ap3_A 216 QLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSK 295 (549)
T ss_dssp EEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTT
T ss_pred EEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHh
Confidence 99999987 3 34543322111100
Q ss_pred ---------------------------------H----------------------HHHhCCCEEE---eCceEEEeCCe
Q 010845 292 ---------------------------------T----------------------QLSKSGVRLV---RGIVKDVDSQK 313 (499)
Q Consensus 292 ---------------------------------~----------------------~l~~~gV~v~---~~~v~~v~~~~ 313 (499)
+ .|.+.+|+++ ...|+++++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~g 375 (549)
T 4ap3_A 296 AFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETG 375 (549)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTE
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCc
Confidence 0 0223489998 56899999999
Q ss_pred EEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCC----------CCCCCCCCCeEEe-ccccccccCCCC
Q 010845 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDE----------WLRVPSVQDVFAV-GDCSGYLESTGK 381 (499)
Q Consensus 314 v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~----------~l~~~~~~~Ifa~-GD~a~~~~~~g~ 381 (499)
|.++|| ++++|+||+|||+.++. ++..+++ ...+.+.+++ .+.++++||.|.+ |--+.
T Consensus 376 v~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i--~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~------- 445 (549)
T 4ap3_A 376 IVTTGA-HYDLDMIVLATGFDAMTGSLDKLEI--VGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSP------- 445 (549)
T ss_dssp EEESSC-EEECSEEEECCCEEESSTTGGGSEE--ECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSC-------
T ss_pred EEeCCC-ceecCEEEECCcccccccccCceeE--ECCCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCC-------
Confidence 999999 99999999999999985 5544432 1122233432 2446789999986 32221
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 382 TVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 382 ~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.........+..|++++++.|....+
T Consensus 446 ~~~~s~~~~~e~~~~~i~~~i~~~~~ 471 (549)
T 4ap3_A 446 SVLANMVLHSELHVDWVADAIAYLDA 471 (549)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 11345677889999999998887765
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=239.74 Aligned_cols=292 Identities=14% Similarity=0.171 Sum_probs=184.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch---hhhhcc-----------------------CCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---ASTCVG-----------------------TLEFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~---~~~~~g-----------------------~~~~~~ 115 (499)
+.+|+|||||++|+++|..|++.|++|+|||+++.+...... +..... .....+
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 95 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHH
Confidence 479999999999999999999999999999998764321100 000000 000001
Q ss_pred cccchhhhccccccCCCeEEEEEEEEEEECCC--CEEEEeeecCccccCCCceeeeeCCeEEEcCC--CCccCCCCCCcc
Q 010845 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (499)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~--~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG--~~~~~~~ipG~~ 191 (499)
+...+..+...+.....+. ...+|++++.++ ..+++... ++ .++.||+||+||| +.|..|.+||++
T Consensus 96 i~~yl~~~~~~~~l~~~i~-~~~~V~~~~~~~~~~~w~V~~~-~G--------~~~~ad~vV~AtG~~s~p~~p~i~G~~ 165 (542)
T 1w4x_A 96 ILRYINFVADKFDLRSGIT-FHTTVTAAAFDEATNTWTVDTN-HG--------DRIRARYLIMASGQLSVPQLPNFPGLK 165 (542)
T ss_dssp HHHHHHHHHHHTTGGGGEE-CSCCEEEEEEETTTTEEEEEET-TC--------CEEEEEEEEECCCSCCCCCCCCCTTGG
T ss_pred HHHHHHHHHHHcCCCceEE-cCcEEEEEEEcCCCCeEEEEEC-CC--------CEEEeCEEEECcCCCCCCCCCCCCCcc
Confidence 1111111111111111222 245777776543 34554431 12 3789999999999 568888999985
Q ss_pred ccC---ccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010845 192 ENA---TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 192 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
... ++..... . .......|+|+|||+|.+|+|+|.+|+..+ .
T Consensus 166 ~f~G~~~hs~~~~--------------~-------~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~--------------~ 210 (542)
T 1w4x_A 166 DFAGNLYHTGNWP--------------H-------EPVDFSGQRVGVIGTGSSGIQVSPQIAKQA--------------A 210 (542)
T ss_dssp GCCSEEEEGGGCC--------------S-------SCCCCBTCEEEEECCSHHHHHHHHHHHHHB--------------S
T ss_pred cCCCceEECCCCC--------------C-------chhccCCCEEEEECCCccHHHHHHHHhhcC--------------c
Confidence 321 1111000 0 000124579999999999999999999876 8
Q ss_pred EEEEEeCC-Cc-CCCC----CHHHH-------------------------------------------------------
Q 010845 269 HVTLIEAN-EI-LSSF----DDRLR------------------------------------------------------- 287 (499)
Q Consensus 269 ~Vtlv~~~-~~-l~~~----~~~~~------------------------------------------------------- 287 (499)
+|+++++. .. +|.. .+...
T Consensus 211 ~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 290 (542)
T 1w4x_A 211 ELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILA 290 (542)
T ss_dssp EEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGG
T ss_pred eEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHH
Confidence 99999886 33 2321 11110
Q ss_pred ----------------HHHHH-----------------------------------HHHhCCCEEE---eCceEEEeCCe
Q 010845 288 ----------------HYATT-----------------------------------QLSKSGVRLV---RGIVKDVDSQK 313 (499)
Q Consensus 288 ----------------~~~~~-----------------------------------~l~~~gV~v~---~~~v~~v~~~~ 313 (499)
+.+.+ .+.+.+|+++ ...|+++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~g 370 (542)
T 1w4x_A 291 AYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRG 370 (542)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSE
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCe
Confidence 00011 1122468887 34899999999
Q ss_pred EEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeC---------CCCCCCCCCCeEEe-ccccccccCCCCC
Q 010845 314 LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGID---------EWLRVPSVQDVFAV-GDCSGYLESTGKT 382 (499)
Q Consensus 314 v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd---------~~l~~~~~~~Ifa~-GD~a~~~~~~g~~ 382 (499)
|+++| +++++|+||||||+.++ .++..+++ ...+|.+..+ ..+.++++||+|++ |+.+..
T Consensus 371 v~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i-~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~------- 441 (542)
T 1w4x_A 371 VRTSE-REYELDSLVLATGFDALTGALFKIDI-RGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPS------- 441 (542)
T ss_dssp EEESS-CEEECSEEEECCCCCCTTHHHHTSEE-ECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSG-------
T ss_pred EEeCC-eEEecCEEEEcCCccccccCcCceee-ECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCc-------
Confidence 99999 99999999999999996 55554332 2234544443 12566789999998 998731
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 383 VLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 383 ~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
..+..++.|.+|++++|++|....+
T Consensus 442 ~~~~~~~~~e~q~~~ia~~i~~~~~ 466 (542)
T 1w4x_A 442 ALSNMLVSIEQHVEWVTDHIAYMFK 466 (542)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1256678999999999999998876
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=178.21 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=128.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC---------CCC-----CHHHHHHHHHHHHh
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------SSF-----DDRLRHYATTQLSK 296 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l---------~~~-----~~~~~~~~~~~l~~ 296 (499)
+|+|||||++|+++|..|++.+ .+|+++++. ..+ +.+ ++++.+.+.+.+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g--------------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAG--------------LKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARR 68 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999877 899999986 344 233 47888999999999
Q ss_pred CCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccc
Q 010845 297 SGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (499)
Q Consensus 297 ~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~ 372 (499)
.||+++.++|++++.+ .+.+++| ++++|.||+|+|.+|+ +.+.++++.+ +|+|.||+++|| +.|+|||+|||
T Consensus 69 ~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~-~~~~~g~~~~-~g~i~vd~~~~t-~~~~i~a~GD~ 144 (180)
T 2ywl_A 69 YGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT-LPSLLGLTRR-GAYIDTDEGGRT-SYPRVYAAGVA 144 (180)
T ss_dssp TTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH-HHHHHTCCEE-TTEECCCTTCBC-SSTTEEECGGG
T ss_pred cCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC-ccccCCCCcc-CceEEeCCCCCc-CCCCEEEeecc
Confidence 9999998888888642 3666777 8999999999999985 5567788888 899999999999 99999999999
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 373 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 373 a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+..+ .++++.|.+||+.+|.||...++
T Consensus 145 ~~~~--------~~~~~~A~~~g~~aa~~i~~~~~ 171 (180)
T 2ywl_A 145 RGKV--------PGHAIISAGDGAYVAVHLVSDLR 171 (180)
T ss_dssp GTCC--------SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcc--------hhhHHHHHHhHHHHHHHHHHHhh
Confidence 9631 23789999999999999998876
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=188.49 Aligned_cols=304 Identities=14% Similarity=0.119 Sum_probs=169.3
Q ss_pred CCCCcEEEECCchHHHHHHHhccCC--------------CCeEEEEcCCCCcccccch--hhhhccCC---------CCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTS--------------LYDVVCVSPRNHMVFTPLL--ASTCVGTL---------EFR 114 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~--------------g~~V~lie~~~~~~~~~~~--~~~~~g~~---------~~~ 114 (499)
...+||||||+||+||++|..|.+. +...+.+|+.+.+.|++.+ ++...... ++.
T Consensus 37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~ 116 (501)
T 4b63_A 37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPR 116 (501)
T ss_dssp TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCC
Confidence 3457999999999999999888642 3467889999888776432 22111100 000
Q ss_pred ---c----------------------cccchhhhccccccCC--CeEEEEEEEEEEECCC----------CEEEEeeecC
Q 010845 115 ---S----------------------VAEPIARIQPAISREP--GSYFFLSHCAGIDTDN----------HVVHCETVTD 157 (499)
Q Consensus 115 ---~----------------------~~~~~~~~~~~~~~~~--~~~~~~~~v~~id~~~----------~~v~~~~~~~ 157 (499)
. ....+.++...++..- .+. ...+|++|.... ..|++.+...
T Consensus 117 s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vr-f~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~ 195 (501)
T 4b63_A 117 SSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVA-YGEEVVEVIPGKSDPSSSVVDFFTVRSRNVET 195 (501)
T ss_dssp CTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEE-ESEEEEEEEEECSSTTSSCBCEEEEEEEETTT
T ss_pred CccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceE-cceEEEeeccccccccccccceEEEEEecCCC
Confidence 0 0011222222222222 233 346777775422 2344444222
Q ss_pred ccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeC
Q 010845 158 ELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (499)
Q Consensus 158 ~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvG 237 (499)
++..++.++.||+|||..|..|+.++....+++...+.+.... +.. +..++|+|+|||
T Consensus 196 ------g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~-------~~~---------~~~~gKrV~VVG 253 (501)
T 4b63_A 196 ------GEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPA-------LLK---------DKSKPYNIAVLG 253 (501)
T ss_dssp ------CCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHH-------HSC---------CTTSCCEEEEEC
T ss_pred ------ceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhh-------ccc---------cccCCcEEEEEC
Confidence 2346789999999999888877665544444444443322211 000 123457999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC---------CCH-----------HHHHHHH-----
Q 010845 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------FDD-----------RLRHYAT----- 291 (499)
Q Consensus 238 gG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~---------~~~-----------~~~~~~~----- 291 (499)
+|.||+|++.+|++.. +..+|+++.|. .+.|. +.+ .....+.
T Consensus 254 ~G~SA~ei~~~L~~~~------------~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~ 321 (501)
T 4b63_A 254 SGQSAAEIFHDLQKRY------------PNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKA 321 (501)
T ss_dssp CSHHHHHHHHHHHHHS------------TTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGG
T ss_pred CcHHHHHHHHHHHhcC------------CCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999998642 12789999986 33321 111 1111110
Q ss_pred ---------------HH-----HH-----hCCCEEEeC-ceEEE------------------eCCeEEECCCcEEeeeEE
Q 010845 292 ---------------TQ-----LS-----KSGVRLVRG-IVKDV------------------DSQKLILNDGTEVPYGLL 327 (499)
Q Consensus 292 ---------------~~-----l~-----~~gV~v~~~-~v~~v------------------~~~~v~~~~g~~i~~D~v 327 (499)
+. +. .....+..+ .+.++ +.+++.+.+|+++++|.|
T Consensus 322 ~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~V 401 (501)
T 4b63_A 322 TNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDAL 401 (501)
T ss_dssp GTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEE
T ss_pred hhhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEE
Confidence 00 10 001223332 22222 234667788999999999
Q ss_pred EEcCCCCcc--hhcc-cC-CCCCCCCCceeeCCCCCCC-------CCCCeEEeccccccccCCCCCCCCchHHHHHHHHH
Q 010845 328 VWSTGVGPS--TLVK-SL-DLPKSPGGRIGIDEWLRVP-------SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 396 (499)
Q Consensus 328 i~a~G~~p~--~~~~-~~-~l~~~~~G~i~vd~~l~~~-------~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~ 396 (499)
|+|||++++ .++. .+ .+..|.+|+..|+.+++.. ..++||+.|-+-.... .+ -|.+...|.+.|+
T Consensus 402 I~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG-~~---~~~Ls~~a~R~~~ 477 (501)
T 4b63_A 402 MVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHG-LS---DSLLSVLAVRGGE 477 (501)
T ss_dssp EECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHC-TT---TTSSTTHHHHHHH
T ss_pred EECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCC-cc---hhhHHHHHHHHHH
Confidence 999999987 2332 22 2455777888888776642 2467999995543221 12 2555667888887
Q ss_pred HHHHHH
Q 010845 397 YLFSLL 402 (499)
Q Consensus 397 ~aa~~i 402 (499)
++..-+
T Consensus 478 I~~~l~ 483 (501)
T 4b63_A 478 MVQSIF 483 (501)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655433
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=139.29 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=107.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC-----------------CC-------CCHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-----------------SS-------FDDRL 286 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l-----------------~~-------~~~~~ 286 (499)
+|+|||||++|+++|..|++.+ .+|+++++. ... .. ....+
T Consensus 5 dVvVVGgG~aGl~aA~~la~~g--------------~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 70 (232)
T 2cul_A 5 QVLIVGAGFSGAETAFWLAQKG--------------VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAF 70 (232)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHH
Confidence 7999999999999999999877 899999986 111 00 11366
Q ss_pred HHHHHHHHHhC-CCEEEeCceEEEeC--C---eEEECCCcEEeeeEEEEcCCCCcchh----------------------
Q 010845 287 RHYATTQLSKS-GVRLVRGIVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTL---------------------- 338 (499)
Q Consensus 287 ~~~~~~~l~~~-gV~v~~~~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~---------------------- 338 (499)
.+.+.+.+++. |++++..+|+++.. + .|.+++|+++++|.||+|+|..++..
T Consensus 71 ~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~ 150 (232)
T 2cul_A 71 HARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLL 150 (232)
T ss_dssp HHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHH
T ss_pred HHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhC
Confidence 77788888887 99999658888753 3 46778888999999999999955421
Q ss_pred --cccCCCCCCCCC--------c-------eeeCC------CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHH
Q 010845 339 --VKSLDLPKSPGG--------R-------IGIDE------WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 395 (499)
Q Consensus 339 --~~~~~l~~~~~G--------~-------i~vd~------~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g 395 (499)
+.+.+++++... . ..+.. .+...++|+|||+|||+ . ..+++.|++||
T Consensus 151 ~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~---------~g~~~~~~~~g 220 (232)
T 2cul_A 151 EDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-R---------EGDYARMSEEG 220 (232)
T ss_dssp HHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-S---------CCCHHHHHHHH
T ss_pred HHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-c---------CccHHHHHHHH
Confidence 122333322111 0 00110 11212899999999999 4 22788899999
Q ss_pred HHHHHHHHHHH
Q 010845 396 KYLFSLLNRIG 406 (499)
Q Consensus 396 ~~aa~~i~~~~ 406 (499)
+.+|.+|...+
T Consensus 221 ~~~a~~i~~~l 231 (232)
T 2cul_A 221 KRLAEHLLHEL 231 (232)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhc
Confidence 99999998754
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-17 Score=166.19 Aligned_cols=218 Identities=16% Similarity=0.131 Sum_probs=116.4
Q ss_pred CCeEEEEE-EEEEEECCCCEE---EEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHH
Q 010845 131 PGSYFFLS-HCAGIDTDNHVV---HCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEI 206 (499)
Q Consensus 131 ~~~~~~~~-~v~~id~~~~~v---~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~ 206 (499)
.++.++.. +| ++..+++.+ .+.+ . ..++.+|.||+|||..+..+.++... ...+- +...+
T Consensus 132 ~gv~i~~~~~v-~l~~~~~~v~Gv~v~~-~---------~g~~~a~~VVlAtGg~~~~~~~~~~~-~~~tG----dgi~~ 195 (472)
T 2e5v_A 132 EGIPIIEDRLV-EIRVKDGKVTGFVTEK-R---------GLVEDVDKLVLATGGYSYLYEYSSTQ-STNIG----DGMAI 195 (472)
T ss_dssp TTCCEECCCEE-EEEEETTEEEEEEETT-T---------EEECCCSEEEECCCCCGGGSSSBSSC-TTCSC----HHHHH
T ss_pred CCCEEEECcEE-EEEEeCCEEEEEEEEe-C---------CCeEEeeeEEECCCCCcccCccccCC-CCCch----HHHHH
Confidence 56666654 57 887665554 2221 1 12577999999999987665442211 01111 11111
Q ss_pred HHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHH
Q 010845 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR 285 (499)
Q Consensus 207 ~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~ 285 (499)
..+.. ...... +..+...+++++|+| +++++..+...+ ..+ +.+.+ ++++.+++.
T Consensus 196 a~~aG--a~~~d~-----e~~q~~p~~~~~ggg--~~~~ae~~~~~G--------------~~~-v~~~g~rf~~~~~~~ 251 (472)
T 2e5v_A 196 AFKAG--TILADM-----EFVQFHPTVTSLDGE--VFLLTETLRGEG--------------AQI-INENGERFLFNYDKR 251 (472)
T ss_dssp HHHTT--CCEECT-----TCEEEEEEEECGGGC--CEECCTHHHHTT--------------CEE-EETTCCCGGGGTCTT
T ss_pred HHHcC--CCEeCC-----cceEEEeEEEccCCC--ceeeehhhcCCc--------------eEE-ECCCCCCCCccCCcc
Confidence 10000 000000 001111245666776 778777776554 555 56565 677655443
Q ss_pred H--------HHHHHHHHHhCCCEEEeC--ceEEEeCCeEEECCCcEEe-eeEEEEcCCCCcchhcccCCCCCCCCCceee
Q 010845 286 L--------RHYATTQLSKSGVRLVRG--IVKDVDSQKLILNDGTEVP-YGLLVWSTGVGPSTLVKSLDLPKSPGGRIGI 354 (499)
Q Consensus 286 ~--------~~~~~~~l~~~gV~v~~~--~v~~v~~~~v~~~~g~~i~-~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v 354 (499)
. ...+.+.+++.|. ++.+ .+.+ + .+.++ .|.++++.|..|+..+.-.+......|.|.|
T Consensus 252 ~el~~rd~v~~~i~~~~~~~~~-v~ld~~~~~~-------~--~~~~~~~~~~~~~~G~dp~~~i~v~p~~~~~~GGI~v 321 (472)
T 2e5v_A 252 GELAPRDILSRAIYIEMLKGHK-VFIDLSKIED-------F--ERKFPVVAKYLARHGHNYKVKIPIFPAAHFVDGGIRV 321 (472)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCC-EEEECTTCTT-------H--HHHCHHHHHHHHHTTCCTTSCEECEEEEEEESCEEEC
T ss_pred cCcCchhHHHHHHHHHHHhCCc-EEEeccchHH-------H--HHHhHHHHHHHHHhCcCcccceEeehhhceeCCCeEE
Confidence 2 5666667766664 3332 1110 1 02233 4777888899987221111111234688999
Q ss_pred CCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 355 d~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|+++|| +.|+|||+|||+... ..|. ...+..|..+|.+.++.+.
T Consensus 322 d~~~~t-~ipgLyAaGd~a~~~-~hg~---~rl~~~sl~~~~v~G~~a~ 365 (472)
T 2e5v_A 322 NIRGES-NIVNLYAIGEVSDSG-LHGA---NRLASNSLLEGLVFGINLP 365 (472)
T ss_dssp CTTCBC-SSBTEEECGGGEECS-SSTT---SCCTTHHHHHHHHHHHHGG
T ss_pred CCCCcc-ccCCEEecchhcccc-cCCC---CCCCcccHHHHHHHHHHHH
Confidence 999999 999999999998621 1122 2344556666555555443
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-14 Score=144.26 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=38.6
Q ss_pred eC-CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 354 ID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 354 vd-~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+| ++|+++..|++|++|++..+....|+ -..|.|...|..|++++.
T Consensus 353 ~~~~tmes~~~~gly~~GE~ldv~g~~GG----ynlq~a~~sg~~ag~~~~ 399 (401)
T 2gqf_A 353 ISSKTMESNQVSGLYFIGEVLDVTGWLGG----YNFQWAWSSAYACALSIS 399 (401)
T ss_dssp BCTTTCBBSSSTTEEECGGGBSCEECTTT----HHHHHHHHHHHHHHHHHH
T ss_pred CChhhccccCCCCEEEEEEeEEeccCCCC----HHHHHHHHHHHHHHHHHh
Confidence 66 77898889999999999998777774 457889999999998764
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=110.80 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=106.0
Q ss_pred cEEEeCcChHHHHHHHHHHHH-HHHHHHHhcCCCCCceEEEEEeCCC-cCCC----------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANE-ILSS---------------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~-~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~---------------------------- 281 (499)
.|+|||||++|+.+|..|++. + .+|+++++.. +...
T Consensus 41 dVvIIGgG~aGl~aA~~la~~~G--------------~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 106 (284)
T 1rp0_A 41 DVVVVGAGSAGLSAAYEISKNPN--------------VQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAY 106 (284)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTT--------------SCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCC
T ss_pred CEEEECccHHHHHHHHHHHHcCC--------------CeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCc
Confidence 799999999999999999875 5 8999999863 2110
Q ss_pred ----------CCHHHHHHHHHHHHh-CCCEEEeC-ceEEEe--CC---eEEEC---------CC-----cEEeeeEEEEc
Q 010845 282 ----------FDDRLRHYATTQLSK-SGVRLVRG-IVKDVD--SQ---KLILN---------DG-----TEVPYGLLVWS 330 (499)
Q Consensus 282 ----------~~~~~~~~~~~~l~~-~gV~v~~~-~v~~v~--~~---~v~~~---------~g-----~~i~~D~vi~a 330 (499)
....+...+.+.+.+ .||+++.+ +|.++. ++ ++.+. ++ .++++|.||.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~A 186 (284)
T 1rp0_A 107 DEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSS 186 (284)
T ss_dssp EECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEEC
T ss_pred ccCCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEEC
Confidence 123444556666655 69999999 888885 33 34442 32 57999999999
Q ss_pred CCCCcc--h----hcccCC--CCCCCCCceeeCC-------CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHH
Q 010845 331 TGVGPS--T----LVKSLD--LPKSPGGRIGIDE-------WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 395 (499)
Q Consensus 331 ~G~~p~--~----~~~~~~--l~~~~~G~i~vd~-------~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g 395 (499)
+|..+. . ....++ +.+.....+.+|. ..++ ..|++|++||++.... |.+...+++..|..+|
T Consensus 187 tG~~s~~~~~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~-~~p~i~a~G~~~~~~~--g~~~~gp~~~~~~~sG 263 (284)
T 1rp0_A 187 CGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE-VVPGMIVTGMEVAEID--GAPRMGPTFGAMMISG 263 (284)
T ss_dssp CCSSSTTTTHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEE-EETTEEECTHHHHHHH--TCEECCSCCHHHHHHH
T ss_pred CCCchHHHHHHHHHhhhccCCCCcCCcCCchhhhhhHHHhhcccc-ccCCEEEEeeehhhhc--CCCCcChHHHHHHHhH
Confidence 998775 2 122222 1122122233332 2344 5799999999875322 2222334567888999
Q ss_pred HHHHHHHHHHHH
Q 010845 396 KYLFSLLNRIGK 407 (499)
Q Consensus 396 ~~aa~~i~~~~~ 407 (499)
+.+|.+|...++
T Consensus 264 ~~~a~~i~~~l~ 275 (284)
T 1rp0_A 264 QKAGQLALKALG 275 (284)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998775
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=118.78 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=74.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC-Ccccc---cc--------h-hhh--hccC---------CCC----
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT---PL--------L-AST--CVGT---------LEF---- 113 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~-~~~~~---~~--------~-~~~--~~g~---------~~~---- 113 (499)
.++|+|||||+||++||..|++.|.+|+|||++. ..... |. + .+. ..+. ...
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~ 106 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN 106 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence 5799999999999999999999999999999974 21110 10 0 000 0000 000
Q ss_pred ----Cccc--------cchhh-hccccccCCCeEEEEEEEEEEECCCCEEE-EeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 114 ----RSVA--------EPIAR-IQPAISREPGSYFFLSHCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 114 ----~~~~--------~~~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
..+. ..+.. +...+....++.+++++|+.+..+++.+. +.. .+| ..+.+|.||+|||
T Consensus 107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t-~dG--------~~i~AdaVVLATG 177 (637)
T 2zxi_A 107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRT-NLG--------VEYKTKAVVVTTG 177 (637)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEE-TTS--------CEEECSEEEECCT
T ss_pred cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEE-CCC--------cEEEeCEEEEccC
Confidence 0000 00111 11223333588888889999887665442 322 112 3799999999999
Q ss_pred CCccCCCCCCcc
Q 010845 180 AEASTFGIHGVK 191 (499)
Q Consensus 180 ~~~~~~~ipG~~ 191 (499)
+.+..+.++|..
T Consensus 178 ~~s~~~~~~G~~ 189 (637)
T 2zxi_A 178 TFLNGVIYIGDK 189 (637)
T ss_dssp TCBTCEEEETTE
T ss_pred CCccCceeccce
Confidence 988777777753
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=101.02 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=71.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccc-----------cchhhh-cccccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA-----------EPIARI-QPAISR 129 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~-~~~~~~ 129 (499)
.++|+|||||++|+++|..|++.|.+|+|||++......+..+. .+......+. ..+... ...+..
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~ 80 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPP--KPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 80 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCC--CSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCcc--ccccchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999732111100000 0000000000 011121 122333
Q ss_pred CCCeEEEEEEEEEEECCCCEEE-EeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCc
Q 010845 130 EPGSYFFLSHCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV 190 (499)
Q Consensus 130 ~~~~~~~~~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~ 190 (499)
..++.++.++|++++.++..+. +.. .++ .++.+|+||+|+|........+|.
T Consensus 81 ~~gv~i~~~~v~~i~~~~~~v~~v~~-~~g--------~~i~a~~VV~A~G~~s~~~~~~G~ 133 (232)
T 2cul_A 81 LRPLHLFQATATGLLLEGNRVVGVRT-WEG--------PPARGEKVVLAVGSFLGARLFLGG 133 (232)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEEE-TTS--------CCEECSEEEECCTTCSSCEEEETT
T ss_pred CCCcEEEEeEEEEEEEeCCEEEEEEE-CCC--------CEEECCEEEECCCCChhhceecCC
Confidence 3478888889999987665542 322 122 379999999999987654444454
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=97.19 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=68.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccC---CCCCccccchhhhccccccCCCeEEEEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGT---LEFRSVAEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
++|+|||||++|+++|..|++.|.+|+|||+++.............+. .....+...+.+. +. ..+++++.++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~-~~gv~v~~~~ 77 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAH---AR-RYGAEVRPGV 77 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHH---HH-HTTCEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHH---HH-HcCCEEEeCE
Confidence 689999999999999999999999999999987433210000000000 0111122222222 22 2567777778
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
|++++.++..+.+... + + ++++|+||+|+|..|+.
T Consensus 78 v~~i~~~~~~~~v~~~--~-------g-~i~ad~vI~A~G~~~~~ 112 (180)
T 2ywl_A 78 VKGVRDMGGVFEVETE--E-------G-VEKAERLLLCTHKDPTL 112 (180)
T ss_dssp CCEEEECSSSEEEECS--S-------C-EEEEEEEEECCTTCCHH
T ss_pred EEEEEEcCCEEEEEEC--C-------C-EEEECEEEECCCCCCCc
Confidence 8888876554444331 1 2 78999999999998753
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.90 E-value=9.6e-10 Score=114.98 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=73.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC-cccc---cchh---------hh--hccC---------CCC---
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH-MVFT---PLLA---------ST--CVGT---------LEF--- 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~-~~~~---~~~~---------~~--~~g~---------~~~--- 113 (499)
..++|+|||||+||++||..|++.|.+|+|||++.. .... |... +. ..+. ...
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l 106 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL 106 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence 357999999999999999999999999999998741 1111 1000 00 0000 000
Q ss_pred -----Cccc--------cchhh-hccccccCCCeEEEEEEEEEEECCCCEE-EEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 114 -----RSVA--------EPIAR-IQPAISREPGSYFFLSHCAGIDTDNHVV-HCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 114 -----~~~~--------~~~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v-~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
..+. ..+.. +...+....++.++.++|+.+..+++.| .+.. .+| ..+.+|.||+||
T Consensus 107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t-~dG--------~~I~Ad~VVLAT 177 (651)
T 3ces_A 107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVT-QMG--------LKFRAKAVVLTV 177 (651)
T ss_dssp STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEE-TTS--------EEEEEEEEEECC
T ss_pred hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEE-CCC--------CEEECCEEEEcC
Confidence 0000 00111 1122333258888888999997665543 2322 112 479999999999
Q ss_pred CCCccCCCCCCc
Q 010845 179 GAEASTFGIHGV 190 (499)
Q Consensus 179 G~~~~~~~ipG~ 190 (499)
|+.+..+.++|.
T Consensus 178 Gt~s~~~~i~G~ 189 (651)
T 3ces_A 178 GTFLDGKIHIGL 189 (651)
T ss_dssp STTTCCEEECC-
T ss_pred CCCccCccccCc
Confidence 998877777775
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=111.28 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCC--------CCcc-hh--cccCCCCCCC
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTG--------VGPS-TL--VKSLDLPKSP 348 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G--------~~p~-~~--~~~~~l~~~~ 348 (499)
.+...+.+.+++.| +++++ +|++|+.+ .|.+.+|+++.+|.||+|+| +.|+ +. .+.++. ...
T Consensus 205 g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~-~~~ 282 (431)
T 3k7m_X 205 GSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE-GHG 282 (431)
T ss_dssp CTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH-CCC
T ss_pred cHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh-CCC
Confidence 34455556666778 99999 89999753 35667888899999999999 7776 21 111111 112
Q ss_pred CCceeeCCCCCCCCCCCeEEecccc
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCS 373 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a 373 (499)
...++|+..+++ ..++||+.||+.
T Consensus 283 ~~~~kv~~~~~~-~~~~i~~~~d~~ 306 (431)
T 3k7m_X 283 GQGLKILIHVRG-AEAGIECVGDGI 306 (431)
T ss_dssp CCEEEEEEEEES-CCTTEEEEBSSS
T ss_pred cceEEEEEEECC-CCcCceEcCCCC
Confidence 234899999998 679999999984
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-09 Score=108.52 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=70.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc------cchhhhh--------ccCCCCCc---cc-cchhh
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT------PLLASTC--------VGTLEFRS---VA-EPIAR 122 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~------~~~~~~~--------~g~~~~~~---~~-~~~~~ 122 (499)
..++|+|||||++|+++|..|++.|++|+|||+++..... +...... .+...... +. ..+..
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~ 170 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL 170 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence 4579999999999999999999999999999998754311 1000000 00000000 00 11111
Q ss_pred h-ccccccCCCeEEEE-EEEEEEECC---CC--EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCC
Q 010845 123 I-QPAISREPGSYFFL-SHCAGIDTD---NH--VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (499)
Q Consensus 123 ~-~~~~~~~~~~~~~~-~~v~~id~~---~~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG 189 (499)
. ...+.. .++.++. .+|+++..+ .. .|++....++ +..++.+|+||+|+|..+......+
T Consensus 171 ~L~~~~~~-~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g------~~~~i~ad~VV~A~G~~S~~r~~~~ 237 (497)
T 2bry_A 171 LLLKVALL-LGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPA------QLASYEFDVLISAAGGKFVPEGFTI 237 (497)
T ss_dssp HHHHHHHH-TTCEEEESCEEEEEECCCSTTCCBEEEEESCCCH------HHHTCCBSEEEECCCTTCCCTTCEE
T ss_pred HHHHHHHh-CCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCC------CEEEEEcCEEEECCCCCcccccccc
Confidence 1 121222 4676655 588888763 22 4444321011 1136899999999999876554444
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.5e-09 Score=106.44 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=98.7
Q ss_pred eCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHH-HHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHH
Q 010845 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIR-RKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (499)
Q Consensus 170 ~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~ 247 (499)
.||.+++++|+.+..+++++.+ +..+......+..++. .++. .... .........+|+|||||++|+.+|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~dVvIVGgG~aGl~aA~ 109 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRAS----QPVY---QQGQACTNTKCLVVGAGPCGLRAAV 109 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHT----SGGG---GGGTTTTTCEEEEECCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhc----cccc---cCccccCCCCEEEECccHHHHHHHH
Confidence 5788999999998766665543 3344444555544431 1110 0000 0001123458999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC------CCC----------------------------HHHHHHHHHH
Q 010845 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFD----------------------------DRLRHYATTQ 293 (499)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------~~~----------------------------~~~~~~~~~~ 293 (499)
.|++.+ .+|+++++...+. ..+ ..+.+.+.+.
T Consensus 110 ~La~~G--------------~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 175 (497)
T 2bry_A 110 ELALLG--------------ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKV 175 (497)
T ss_dssp HHHHTT--------------CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHH
T ss_pred HHHHCC--------------CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHH
Confidence 999877 8999999863211 001 4566677788
Q ss_pred HHhCCCEEEeC-ceEEEeCC-------eEEE--C-CC--cEEeeeEEEEcCCCCcc
Q 010845 294 LSKSGVRLVRG-IVKDVDSQ-------KLIL--N-DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~-------~v~~--~-~g--~~i~~D~vi~a~G~~p~ 336 (499)
+++.||+++.+ +|.+++.+ .|.+ . +| +++.+|.||.|+|..+.
T Consensus 176 ~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~ 231 (497)
T 2bry_A 176 ALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV 231 (497)
T ss_dssp HHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred HHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence 88899999999 89998642 4556 3 55 57999999999999886
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-07 Score=89.98 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCC--cEEeeeEEEEcCCCCcchhcccC-CC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDG--TEVPYGLLVWSTGVGPSTLVKSL-DL 344 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~-~l 344 (499)
+..+.+.+.+.+++.|++++.+ +|++++. + .|.+.+| .++.+|.||+|+|.....+...+ |+
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~ 219 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGI 219 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETS
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCC
Confidence 4578888888999999999988 8988864 2 3566677 48999999999999987776666 54
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-08 Score=100.20 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+++|+|||||+||+++|..|++.|++|+|||+++..
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~ 62 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP 62 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3579999999999999999999999999999998754
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.61 E-value=6.1e-08 Score=92.42 Aligned_cols=122 Identities=15% Similarity=0.055 Sum_probs=69.8
Q ss_pred CCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCCcccccchhh--------------hh--ccCCCC---C-----cc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFTPLLAS--------------TC--VGTLEF---R-----SV 116 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~~~~~~~~~~--------------~~--~g~~~~---~-----~~ 116 (499)
+++|+|||||++|+++|..|++. |.+|+|||+++.......... .+ .|.... . ..
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 118 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 118 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence 46899999999999999999997 999999999875421100000 00 010000 0 00
Q ss_pred ccchhhhccccccCCCeEEEE-EEEEEEECCCCEE---EEeee----cCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 117 AEPIARIQPAISREPGSYFFL-SHCAGIDTDNHVV---HCETV----TDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~v~~id~~~~~v---~~~~~----~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
......+...+....++.++. .+|++++.+...+ .+... .... ...++...+.+|.||+|+|..+..
T Consensus 119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~-g~~g~~~~i~ad~VV~AtG~~s~~ 193 (284)
T 1rp0_A 119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHT-QSCMDPNVMEAKIVVSSCGHDGPF 193 (284)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTT-SSCCCCEEEEEEEEEECCCSSSTT
T ss_pred HHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCc-cccCceEEEECCEEEECCCCchHH
Confidence 001112222233446787766 5889998766544 33210 0000 000123579999999999987654
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-08 Score=106.21 Aligned_cols=120 Identities=14% Similarity=0.252 Sum_probs=72.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC-cccc---cchh---------hh--hccC---------CCC---
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH-MVFT---PLLA---------ST--CVGT---------LEF--- 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~-~~~~---~~~~---------~~--~~g~---------~~~--- 113 (499)
..++|+|||||+||++||..|++.|.+|+|||++.. .... |... .. ..+. ...
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l 99 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML 99 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence 357999999999999999999999999999998741 1111 1100 00 0000 000
Q ss_pred -----Ccc-----cc---chh-hhccccccCCCeEEEEEEEEEEECCCCEEE-EeeecCccccCCCceeeeeCCeEEEcC
Q 010845 114 -----RSV-----AE---PIA-RIQPAISREPGSYFFLSHCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 114 -----~~~-----~~---~~~-~~~~~~~~~~~~~~~~~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
..+ .. .+. .+...+....++.++.++|+.+..++..|. +.. .++ ..+.+|.||+||
T Consensus 100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t-~~G--------~~i~Ad~VVLAT 170 (641)
T 3cp8_A 100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTV-RSG--------RAIQAKAAILAC 170 (641)
T ss_dssp CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEE-TTS--------CEEEEEEEEECC
T ss_pred ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEE-CCC--------cEEEeCEEEECc
Confidence 000 00 111 112223333588888889999877666654 332 112 379999999999
Q ss_pred CCCccCCCCCC
Q 010845 179 GAEASTFGIHG 189 (499)
Q Consensus 179 G~~~~~~~ipG 189 (499)
|+.++.+.++|
T Consensus 171 G~~s~~~i~~G 181 (641)
T 3cp8_A 171 GTFLNGLIHIG 181 (641)
T ss_dssp TTCBTCEEEET
T ss_pred CCCCCccceee
Confidence 99876544444
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=93.89 Aligned_cols=92 Identities=17% Similarity=0.376 Sum_probs=72.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHH-------------HHHHHHHhC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH-------------YATTQLSKS 297 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~-------------~~~~~l~~~ 297 (499)
.+|+|||||+.|+.+|..|...+ .+|+++++.+.++...+.+.. ...+.+++.
T Consensus 10 ~~~vIvGgG~AGl~aA~~L~~~~--------------~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~ 75 (385)
T 3klj_A 10 TKILILGAGPAGFSAAKAALGKC--------------DDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKN 75 (385)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTC--------------SCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHT
T ss_pred CCEEEEcCcHHHHHHHHHHhCCC--------------CEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHC
Confidence 38999999999999999994332 899999987544322222222 234567789
Q ss_pred CCEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
||+++.+ +|.+++.+ .|++++|+++.+|.+|+|||.+|.
T Consensus 76 ~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~ 117 (385)
T 3klj_A 76 NIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIAN 117 (385)
T ss_dssp TCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcC
Confidence 9999999 89999864 788999999999999999999876
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.4e-08 Score=97.50 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~ 46 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 3579999999999999999999999999999998654
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-08 Score=98.24 Aligned_cols=94 Identities=22% Similarity=0.420 Sum_probs=71.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---CCCC---------HHHHHHHHHHHHhCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSG 298 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---~~~~---------~~~~~~~~~~l~~~g 298 (499)
|+|+|||||+.|+.+|..|++.+ ++.+||+|++.+.. |.++ +++...+.+.+++.|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~------------~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~g 70 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLM------------PDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFN 70 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHC------------TTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGT
T ss_pred CcEEEECCCHHHHHHHHHHhccC------------cCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCC
Confidence 48999999999999999998754 23799999987421 2111 111111234566789
Q ss_pred CEEEeCceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.++|++|+.+ .|++++|+++++|.+|+|||.++.
T Consensus 71 v~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 71 IEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE
T ss_pred cEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc
Confidence 99999999999864 799999999999999999998653
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-06 Score=85.36 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
+..+.+.+.+.+++.|++++.+ +|+++.. + .|.+.+| ++.+|.||+|+|...+.+...++
T Consensus 173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g 238 (405)
T 2gag_B 173 HDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAG 238 (405)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcC
Confidence 3577788888899999999998 8988863 2 3666677 79999999999988765544443
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-06 Score=92.14 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCc-EEeeeEEEEcCCCCcchhcccCCCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGT-EVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~-~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
+..+...+.+.+++.|++++.+ +|+++.. + .|.+.+|+ ++.+|.||+|+|.....+....+++
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lp 479 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLP 479 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTTCSTTTTTSC
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchhccccccCCc
Confidence 4577888888899999999998 8988864 3 35666776 8999999999999876555444443
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-07 Score=86.44 Aligned_cols=91 Identities=20% Similarity=0.330 Sum_probs=73.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC----c------CCCC----CHHHHHHHHHHHHhC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE----I------LSSF----DDRLRHYATTQLSKS 297 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~----~------l~~~----~~~~~~~~~~~l~~~ 297 (499)
+|+|||||+.|+.+|..|++.+ .+|+++++.. . ++.. ..++..++.+.+++.
T Consensus 4 ~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (297)
T 3fbs_A 4 DVIIIGGSYAGLSAALQLGRAR--------------KNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERY 69 (297)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTC
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999999999876 8999999642 1 1111 246777778888876
Q ss_pred -CCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 -GVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 -gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++++.++|.+++.+ .|.+.+|+++.+|.+|+|+|..|.
T Consensus 70 ~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~ 113 (297)
T 3fbs_A 70 PTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE 113 (297)
T ss_dssp TTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE
T ss_pred CCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC
Confidence 799887788888654 577888889999999999999875
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-07 Score=94.12 Aligned_cols=95 Identities=25% Similarity=0.253 Sum_probs=71.7
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc--C-CC--------CCHHHHHHHHHHHHhCC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--L-SS--------FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~--l-~~--------~~~~~~~~~~~~l~~~g 298 (499)
+|||+|||||+.|+.+|..|++.+ ++.+|++|++.+. . |. .+.+....-.+.+.+.|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~------------~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~g 69 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLAD------------PSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHG 69 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC------------TTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTT
T ss_pred cCEEEEECCcHHHHHHHHHHHhcC------------cCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCC
Confidence 479999999999999999997654 2379999998632 1 11 11111111124466789
Q ss_pred CEEEeCceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.++|++|+.+ .+++.+|+++++|.+|+|+|.+++
T Consensus 70 v~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~ 109 (401)
T 3vrd_B 70 IQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL 109 (401)
T ss_dssp CEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccc
Confidence 99999999999864 688999999999999999999876
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.4e-08 Score=97.01 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=33.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+.+||+||||||||+++|..|++.|++|+|||+++.+
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~ 39 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI 39 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3579999999999999999999999999999997654
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.1e-06 Score=81.85 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
+..+.+.+.+.+++.|++++.+ +|++++. +. |.+.+| ++.+|.||+|+|.....+...++
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g 213 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAG 213 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcC
Confidence 4577788888899999999998 8988863 22 666666 89999999999998765544333
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.6e-07 Score=89.11 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=56.7
Q ss_pred hcCCCC-CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcCC
Q 010845 260 RYSHVK-DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 260 ~~~~~~-~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~G 332 (499)
.+|.+. +.....++... ..+. +..+...+.+.+++.|++++.+ +|.+++. ++ |.+++| ++.+|.||+|+|
T Consensus 126 ~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G 202 (389)
T 2gf3_A 126 RWPGITVPENYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMG 202 (389)
T ss_dssp HSTTCCCCTTEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCG
T ss_pred hCCCcccCCCceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecC
Confidence 345443 33566676654 2222 3578888889999999999998 8988864 23 445444 799999999999
Q ss_pred CCcchhcccCC
Q 010845 333 VGPSTLVKSLD 343 (499)
Q Consensus 333 ~~p~~~~~~~~ 343 (499)
...+.++..++
T Consensus 203 ~~~~~l~~~~g 213 (389)
T 2gf3_A 203 AWNSKLLSKLN 213 (389)
T ss_dssp GGHHHHGGGGT
T ss_pred ccHHHHhhhhc
Confidence 98776655544
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-07 Score=93.83 Aligned_cols=95 Identities=25% Similarity=0.424 Sum_probs=74.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---CC---------CCHHHHHHHHHHHHhCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SS---------FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---~~---------~~~~~~~~~~~~l~~~g 298 (499)
++|+|||||+.|+.+|..|++... .+.+|+++++.+.. |. ...++...+.+.+++.|
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~-----------~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 73 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALG-----------SGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKG 73 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHG-----------GGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTT
T ss_pred CcEEEECCcHHHHHHHHHHhccCC-----------CcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCC
Confidence 489999999999999999988321 12899999987422 21 11233333566778899
Q ss_pred CEEEeCceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+++++++.+ .|.+++|+++.+|.+|+|+|.+|+
T Consensus 74 v~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~ 113 (437)
T 3sx6_A 74 IHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA 113 (437)
T ss_dssp CEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC
T ss_pred CEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC
Confidence 99998899999875 788999999999999999999887
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.7e-07 Score=91.46 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.+++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3457999999999999999999999999999999864
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.45 E-value=9.6e-07 Score=86.53 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=72.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c---------------------CCCCC------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---------------------LSSFD------ 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~---------------------l~~~~------ 283 (499)
+|+|||||+.|+.+|..|++.+ .+|+++++.. + ++.++
T Consensus 5 ~vvIIG~G~aGl~~A~~l~~~g--------------~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 4a9w_A 5 DVVVIGGGQSGLSAGYFLRRSG--------------LSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQG 70 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHSS--------------CCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCcc
Confidence 7999999999999999999876 8999999763 2 11111
Q ss_pred -----HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEECCCcEEeeeEEEEcCCCCcc
Q 010845 284 -----DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 -----~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+.+++.+.+++.|++++.+ +|.+++. +. |.+++| ++.+|.||+|+|..+.
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~ 133 (357)
T 4a9w_A 71 PYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGE 133 (357)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence 578888888899999999998 8888864 33 666666 8999999999997543
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-07 Score=95.63 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred eeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 352 i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|.+|+++++.+.+++|++||++.+ ..-...|..+|..+|+.|...+.
T Consensus 497 i~~~~~~~~~~~~gly~~GegaG~---------a~gi~~Aa~~G~~~a~~i~~~~~ 543 (549)
T 3nlc_A 497 IKRGKDFQSVNLKGFYPAGEGAGY---------AGGILSAGIDGIKVAEAVARDIV 543 (549)
T ss_dssp CCCTTTTSCTTCBTEEECHHHHTS---------CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCceECCcCCEEEccccCCh---------hhHHHHHHHHHHHHHHHHHHHhh
Confidence 778999998899999999999964 33466788899999999887765
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.6e-07 Score=85.66 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=74.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc------------CCCC-----CHHHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~------------l~~~-----~~~~~~~~~~~ 293 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++..+ .+.+ ..++.+++.+.
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQ--------------LSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQ 74 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHH
Confidence 48999999999999999999876 89999997621 1222 24677778888
Q ss_pred HHhCCCEEEeCceEEEeCC-------eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 294 LSKSGVRLVRGIVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~~~-------~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.|++++.+++.+++.+ .|.+.+|+++.+|.+|+|+|..|.
T Consensus 75 ~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~ 124 (325)
T 2q7v_A 75 AEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR 124 (325)
T ss_dssp HHHTTCEEEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC
T ss_pred HHHcCCEEEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence 8899999998888877533 466778889999999999999875
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=93.89 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|+|||||++|+++|..|++.|.+|+|||+.+.
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~ 60 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 60 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 347999999999999999999999999999999864
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.6e-07 Score=91.83 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.++++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~ 58 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 58 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 45689999999999999999999999999999998653
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=9.3e-07 Score=86.03 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=75.2
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-----c------------CCCCC-----HHH
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-----I------------LSSFD-----DRL 286 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-----~------------l~~~~-----~~~ 286 (499)
..++|+|||||+.|+.+|..|++.+ .+|+++++.. . +|.++ .++
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 86 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAE--------------IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSEL 86 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHH
Confidence 3458999999999999999999876 8899999831 0 12332 477
Q ss_pred HHHHHHHHHhCCCEEEeCceEEEeCC--eEEE-----CCCcEEeeeEEEEcCCCCcc
Q 010845 287 RHYATTQLSKSGVRLVRGIVKDVDSQ--KLIL-----NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~~gV~v~~~~v~~v~~~--~v~~-----~~g~~i~~D~vi~a~G~~p~ 336 (499)
..++.+.+++.|++++.+.|.+++.+ .+.+ .++.++.+|.+|+|+|..|.
T Consensus 87 ~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~ 143 (338)
T 3itj_A 87 MDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK 143 (338)
T ss_dssp HHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC
T ss_pred HHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC
Confidence 88888999999999998888888764 3444 46778999999999999875
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=84.72 Aligned_cols=92 Identities=13% Similarity=0.247 Sum_probs=75.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---Cc--------CCCC----CHHHHHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LSSF----DDRLRHYATTQLS 295 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~--------l~~~----~~~~~~~~~~~l~ 295 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++. .. .|.+ ..++.+++.+.++
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYM--------------LKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIE 81 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHH
T ss_pred cCEEEECccHHHHHHHHHHHHCC--------------CcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999876 889999984 11 1222 2467778888888
Q ss_pred hCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.|++++..+|.+++.+ .+.+.+++++.+|.+|+|+|..|.
T Consensus 82 ~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~ 126 (323)
T 3f8d_A 82 KYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR 126 (323)
T ss_dssp TTTCCEEESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC
T ss_pred HcCCEEEEEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc
Confidence 99999998888888654 477778889999999999999876
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-06 Score=82.61 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=72.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce-EEEEEeCCCc------------CCCC-----CHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~------------l~~~-----~~~~~~~~~~~ 293 (499)
+|+|||||+.|+.+|..|++.+ . +|+++++... .|.+ ...+.+++.+.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--------------~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 68 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGG--------------VKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQ 68 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred eEEEECccHHHHHHHHHHHHCC--------------CCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHH
Confidence 7999999999999999998876 7 8999997521 1222 24677778888
Q ss_pred HHhCCCEEEeCceEEEe--CC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 294 LSKSGVRLVRGIVKDVD--SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~--~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.|++++..+|.+++ .+ .+.+.+|+++.+|.+|+|+|..|.
T Consensus 69 ~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~ 115 (311)
T 2q0l_A 69 CFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK 115 (311)
T ss_dssp HHTTSCEEECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHcCCEEEEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC
Confidence 88899999987777775 34 466778889999999999998775
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=83.03 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=72.7
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEE-EeCCCc------------CCCCC-----HHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL-IEANEI------------LSSFD-----DRLRHYATT 292 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtl-v~~~~~------------l~~~~-----~~~~~~~~~ 292 (499)
++|+|||||+.|+.+|..|++.+ .+|++ +++..+ .|.++ .++..++.+
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGG--------------LKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSE 70 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHT--------------CSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHH
Confidence 48999999999999999999876 78999 886321 23333 577888888
Q ss_pred HHHhCCCEEEeCceEEE-eC--CeEE--ECCCcEEeeeEEEEcCCCCcc
Q 010845 293 QLSKSGVRLVRGIVKDV-DS--QKLI--LNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 293 ~l~~~gV~v~~~~v~~v-~~--~~v~--~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+++.|++++.+++.++ ++ +.+. +.++.++.+|.+|+|+|..|.
T Consensus 71 ~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~ 119 (315)
T 3r9u_A 71 QCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK 119 (315)
T ss_dssp HHTTTCCEEECCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHHcCcEEEEEEEEEEecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC
Confidence 89999999998888887 54 4454 543338999999999999775
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-06 Score=89.95 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcccCCCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
+..+...+.+.+++.|++++.+ +|+++.. + .|.+.+|.++.+|.||+|+|.....+....+++
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~lp 483 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLP 483 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGGCSTTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchhccccccCCc
Confidence 3577888888889999999999 8888853 3 355567788999999999999876555444443
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.5e-07 Score=96.03 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=32.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..++|+|||||+||+++|..|++.|++|+|||+.+
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~ 56 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 45899999999999999999999999999999985
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-07 Score=92.17 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~ 41 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE 41 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 468999999999999999999999999999998654
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-06 Score=83.45 Aligned_cols=91 Identities=24% Similarity=0.297 Sum_probs=73.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC----------------CCC----CHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------SSF----DDRLRHYA 290 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l----------------~~~----~~~~~~~~ 290 (499)
++|+|||||+.|+.+|..|++.+ .+|+++++.+.+ +.+ ..++..++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQ--------------ASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNL 73 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHH
Confidence 48999999999999999998866 899999986311 111 25677888
Q ss_pred HHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCC---Ccc
Q 010845 291 TTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGV---GPS 336 (499)
Q Consensus 291 ~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~---~p~ 336 (499)
.+.+++.|++++.+ +|.+++.+ .|.+.+|+ +.+|.||+|+|. .|.
T Consensus 74 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~ 127 (332)
T 3lzw_A 74 KEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR 127 (332)
T ss_dssp HHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC
T ss_pred HHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC
Confidence 88888899999987 88888643 46677765 999999999999 554
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-07 Score=90.48 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=31.8
Q ss_pred CcEEEECCchHHHHHHHhccC---CCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~ 96 (499)
++|+|||||++|+++|+.|++ .|++|+|||+++.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~ 38 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD 38 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence 589999999999999999999 8999999999854
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-06 Score=83.05 Aligned_cols=92 Identities=24% Similarity=0.263 Sum_probs=74.4
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC-----------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~----------------------------- 281 (499)
.+|+|||||++|+.+|..|++.+ .+|+++++......
T Consensus 12 ~dVvIVGaG~aGl~~A~~L~~~G--------------~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~ 77 (379)
T 3alj_A 12 RRAEVAGGGFAGLTAAIALKQNG--------------WDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSH 77 (379)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCB
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCC
Confidence 48999999999999999999877 89999997632110
Q ss_pred ----------------CC-----------HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-eEEECCCcEEeeeEEEEcCC
Q 010845 282 ----------------FD-----------DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-KLILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 282 ----------------~~-----------~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-~v~~~~g~~i~~D~vi~a~G 332 (499)
++ ..+.+.+.+.+++.||+++.+ +|.+++.+ .|++.+|+++.+|.||.|+|
T Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG 157 (379)
T 3alj_A 78 TPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADG 157 (379)
T ss_dssp CCSCEEEEETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCC
T ss_pred CccceEEEeCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCC
Confidence 00 345667778888889999999 88888644 67788899999999999999
Q ss_pred CCcc
Q 010845 333 VGPS 336 (499)
Q Consensus 333 ~~p~ 336 (499)
..+.
T Consensus 158 ~~s~ 161 (379)
T 3alj_A 158 VGSK 161 (379)
T ss_dssp TTCH
T ss_pred ccHH
Confidence 9875
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=89.12 Aligned_cols=94 Identities=26% Similarity=0.370 Sum_probs=71.4
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCC--------------HHHHHHHHHHHHh
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD--------------DRLRHYATTQLSK 296 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~--------------~~~~~~~~~~l~~ 296 (499)
.+|+|||||+.|+.+|..|++.+. +.+|+++++.+.++... ..+.....+.+++
T Consensus 5 ~~vvIIGgG~aGl~aA~~l~~~g~------------~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 72 (431)
T 1q1r_A 5 DNVVIVGTGLAGVEVAFGLRASGW------------EGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAA 72 (431)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------------CSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHH
T ss_pred CcEEEEcCHHHHHHHHHHHHccCc------------CCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHh
Confidence 389999999999999999988761 13899999864332110 1111112356778
Q ss_pred CCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.||+++.+ +|..++. ..|.+++|+++.+|.+|+|+|.+|.
T Consensus 73 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~ 115 (431)
T 1q1r_A 73 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPR 115 (431)
T ss_dssp TTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCcc
Confidence 89999998 8999986 4788888999999999999999886
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.32 E-value=7e-07 Score=89.37 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357999999999999999999999999999999865
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.1e-07 Score=90.44 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|||||++|+++|..|++.|++|+|||+++
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3799999999999999999999999999999985
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=86.34 Aligned_cols=93 Identities=22% Similarity=0.292 Sum_probs=72.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHH-------------HHHHHHHhCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH-------------YATTQLSKSG 298 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~-------------~~~~~l~~~g 298 (499)
+|+|||||+.|+.+|..|++.+. +.+|+++++.+.++...+.+.. ...+.+++.|
T Consensus 4 ~vvIIGaG~AGl~aA~~L~~~g~------------~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 71 (410)
T 3ef6_A 4 HVAIIGNGVGGFTTAQALRAEGF------------EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEAR 71 (410)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC------------CSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTT
T ss_pred CEEEEcccHHHHHHHHHHHccCc------------CCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCC
Confidence 89999999999999999988761 2469999987543322111211 1234567789
Q ss_pred CEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 299 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+ ++..++.+ .|.+.+|+++.+|.+|+|||.+|.
T Consensus 72 i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~ 112 (410)
T 3ef6_A 72 IDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRAR 112 (410)
T ss_dssp CEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCccc
Confidence 999999 89999865 788899999999999999998876
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.5e-07 Score=90.51 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=72.3
Q ss_pred ccEEEeCcChHHHHHHHHHHH---HHHHHHHHhcCCCCCceEEEEEeCCC-c--CCC---------CCHHHHHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSD---FIMRDVRQRYSHVKDYIHVTLIEANE-I--LSS---------FDDRLRHYATTQLS 295 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~---~~~~~~~~~~~~~~~~~~Vtlv~~~~-~--l~~---------~~~~~~~~~~~~l~ 295 (499)
++|+|||||++|+++|..|++ .+ .+|+++++.+ . .+. ..+++...+.+.++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g--------------~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSK--------------ADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALP 67 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGG--------------SEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTG
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCC--------------CeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHh
Confidence 379999999999999999988 33 8999999863 1 111 12234445667778
Q ss_pred hCCCEEEeCceEEEeCC--eEEECCCc----EEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRGIVKDVDSQ--KLILNDGT----EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~~v~~v~~~--~v~~~~g~----~i~~D~vi~a~G~~p~ 336 (499)
+.||+++.++|.+++.+ .|++.+++ ++++|.+|+|+|.+|+
T Consensus 68 ~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~ 114 (409)
T 3h8l_A 68 EKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA 114 (409)
T ss_dssp GGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC
T ss_pred hCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC
Confidence 88999998899999865 78887775 3999999999999886
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=89.15 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=78.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I------------------------------- 278 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~------------------------------- 278 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++++ +
T Consensus 108 ~DVVIVGgGpaGL~aA~~La~~G--------------~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~ 173 (549)
T 3nlc_A 108 ERPIVIGFGPCGLFAGLVLAQMG--------------FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGT 173 (549)
T ss_dssp CCCEEECCSHHHHHHHHHHHHTT--------------CCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGT
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEEccCcccccccchhcccccccccccccceeccCCccc
Confidence 48999999999999999999876 8899998752 1
Q ss_pred -----C------CCC------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----
Q 010845 279 -----L------SSF------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---- 312 (499)
Q Consensus 279 -----l------~~~------------------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---- 312 (499)
+ +.+ ...+.+.+.+.+++.|++++.+ +|+++..+
T Consensus 174 ~sdgkl~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v 253 (549)
T 3nlc_A 174 FSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQI 253 (549)
T ss_dssp TSCCCCCCCSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBE
T ss_pred ccCCceEEEeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEE
Confidence 0 000 0345566777788899999999 89888532
Q ss_pred -eEEECCCcEEeeeEEEEcCCCCcch---hcccCCCCCC
Q 010845 313 -KLILNDGTEVPYGLLVWSTGVGPST---LVKSLDLPKS 347 (499)
Q Consensus 313 -~v~~~~g~~i~~D~vi~a~G~~p~~---~~~~~~l~~~ 347 (499)
+|++.+|+++.||.||+|+|..+.. .+...++...
T Consensus 254 ~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~~~ 292 (549)
T 3nlc_A 254 TGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVYME 292 (549)
T ss_dssp EEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCCcc
Confidence 4778899999999999999999962 4455565543
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.6e-06 Score=81.91 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=71.8
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC----------------CCC----CHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------SSF----DDRLRHYA 290 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l----------------~~~----~~~~~~~~ 290 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++.+.+ +.+ ..++.+++
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 71 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRG--------------LSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGL 71 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHH
Confidence 48999999999999999998765 899999986311 111 25667777
Q ss_pred HHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCc
Q 010845 291 TTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 291 ~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+.+++.+++++.+ +|.+++.+ .|.+.+|+++.+|.||+|+|..+
T Consensus 72 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~ 121 (335)
T 2zbw_A 72 VEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGA 121 (335)
T ss_dssp HHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSE
T ss_pred HHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCC
Confidence 78888889999888 88887653 36667788899999999999953
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.7e-06 Score=81.45 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=73.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--------CC----CHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--------SF----DDRLRHYA 290 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--------~~----~~~~~~~~ 290 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++.+.+ | .+ ..++.+.+
T Consensus 15 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (360)
T 3ab1_A 15 RDLTIIGGGPTGIFAAFQCGMNN--------------ISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESL 80 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHH
Confidence 48999999999999999998766 899999985311 1 11 15677778
Q ss_pred HHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCc
Q 010845 291 TTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 291 ~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+.+++.+++++.+ +|.+++.+ .|.+.+|+++.+|.+|+|+|..+
T Consensus 81 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 81 WAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp HHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred HHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence 88888899999988 88888642 47777888999999999999943
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.1e-07 Score=85.37 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=33.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
.+|+|||||||||+||..|++.|++|+|||+++...
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G 38 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG 38 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 589999999999999999999999999999987654
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-06 Score=81.77 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=73.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---CcC--------CC----CCHHHHHHHHHHHHh
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL--------SS----FDDRLRHYATTQLSK 296 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~l--------~~----~~~~~~~~~~~~l~~ 296 (499)
+|+|||||+.|+.+|..|++.+ .+|+++++. ... +. ..+.+.+++.+.+++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKG--------------IRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999998866 789999752 111 11 124677788888889
Q ss_pred CCCEEEeC-ceEEEeCC-------eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~-------~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.|++++.+ +|..++.+ .|.+++|+++.+|.+|+|+|..|.
T Consensus 69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~ 116 (310)
T 1fl2_A 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR 116 (310)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence 99999999 89999642 466778889999999999998875
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=91.24 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~ 39 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG 39 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 47999999999999999999999999999998864
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.1e-06 Score=85.21 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~ 161 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP 161 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 469999999999999999999999999999998654
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-06 Score=85.77 Aligned_cols=94 Identities=22% Similarity=0.354 Sum_probs=72.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC--------------CHHHHHHHHHHHHh
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF--------------DDRLRHYATTQLSK 296 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~--------------~~~~~~~~~~~l~~ 296 (499)
++|+|||||+.|+.+|..|++.+. +.+|+++++.+.++.. ...+.....+.+.+
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~------------~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 69 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKY------------PGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQD 69 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC------------CSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHH
T ss_pred CCEEEEcChHHHHHHHHHHHhhCc------------CCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHh
Confidence 489999999999999999988761 1389999986432211 11122233456778
Q ss_pred CCCEEEeCceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+|+++..++.+++.+ .+.+.+|+++.+|.+|+|||.+|.
T Consensus 70 ~~i~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~ 111 (404)
T 3fg2_P 70 QAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNR 111 (404)
T ss_dssp TTEEEECCCEEEEETTTTEEEESSSCEEECSEEEECCCEEEC
T ss_pred CCCEEEEEEEEEEECCCCEEEECCCCEEECCEEEEeeCCCcc
Confidence 8999998888888764 688899999999999999998775
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-06 Score=90.75 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~ 83 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE 83 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 47999999999999999999999999999998754
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-06 Score=88.14 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=70.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|||+.+.+.-. ...++...+.+. +. ..+++++. .+|
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------~~~~~~~~l~~~---l~-~~gV~i~~~~~v 233 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-----------GDPETAALLRRA---LE-KEGIRVRTKTKA 233 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------SCHHHHHHHHHH---HH-HTTCEEECSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------cCHHHHHHHHHH---HH-hcCCEEEcCCEE
Confidence 478999999999999999999999999999998753210 011111222222 22 25777765 488
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.++.+.+.+.+....+. .++..++++|.||+|+|..|+...
T Consensus 234 ~~i~~~~~~~~v~~~~~~----~g~~~~i~~D~vv~a~G~~p~~~~ 275 (464)
T 2eq6_A 234 VGYEKKKDGLHVRLEPAE----GGEGEEVVVDKVLVAVGRKPRTEG 275 (464)
T ss_dssp EEEEEETTEEEEEEEETT----CCSCEEEEESEEEECSCEEESCTT
T ss_pred EEEEEeCCEEEEEEeecC----CCceeEEEcCEEEECCCcccCCCC
Confidence 888876655444321110 011237899999999999987653
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.9e-06 Score=80.45 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=73.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc------------CCCC-----CHHHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~------------l~~~-----~~~~~~~~~~~ 293 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++... .|.+ .+++.+++.+.
T Consensus 15 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (335)
T 2a87_A 15 RDVIVIGSGPAGYTAALYAARAQ--------------LAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQ 80 (335)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTT--------------CCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHH
Confidence 48999999999999999998876 78999985311 1222 24677778888
Q ss_pred HHhCCCEEEeCceEEEeCC---eE-EECCCcEEeeeEEEEcCCCCcc
Q 010845 294 LSKSGVRLVRGIVKDVDSQ---KL-ILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~~~---~v-~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.|++++.+.+.+++.+ .| .+++|+++.+|.+|+|+|..|.
T Consensus 81 ~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~ 127 (335)
T 2a87_A 81 ALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR 127 (335)
T ss_dssp HHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc
Confidence 8889999998888877752 46 6778889999999999998775
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=89.04 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=69.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+.+.- .. ...+...+.+. +.+ .+++++. .+|
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~--~~---------~~~~~~~l~~~---l~~-~Gv~i~~~~~V 231 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP--TM---------DLEVSRAAERV---FKK-QGLTIRTGVRV 231 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT--TS---------CHHHHHHHHHH---HHH-HTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc--cc---------CHHHHHHHHHH---HHH-CCCEEEECCEE
Confidence 47899999999999999999999999999999876321 00 01111122222 222 4677765 488
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.++.+.+.+.+... ++ .++++|.||+|+|..|+...
T Consensus 232 ~~i~~~~~~v~v~~~-~g--------~~i~~D~vv~A~G~~p~~~~ 268 (455)
T 2yqu_A 232 TAVVPEAKGARVELE-GG--------EVLEADRVLVAVGRRPYTEG 268 (455)
T ss_dssp EEEEEETTEEEEEET-TS--------CEEEESEEEECSCEEECCTT
T ss_pred EEEEEeCCEEEEEEC-CC--------eEEEcCEEEECcCCCcCCCC
Confidence 888876666655431 12 47999999999999987643
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-06 Score=86.42 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++|+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~ 40 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999864
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=86.98 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=68.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (499)
..++|+|||||++|+.+|..|++.|.+|+|+|+.+.+.... . ..++...+.+. + ...+++++. .+
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------~-~~~~~~~l~~~---l-~~~gv~i~~~~~ 213 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY---------L-DKEFTDVLTEE---M-EANNITIATGET 213 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT---------C-CHHHHHHHHHH---H-HTTTEEEEESCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc---------C-CHHHHHHHHHH---H-HhCCCEEEcCCE
Confidence 45799999999999999999999999999999987532110 0 11111222222 2 336788877 47
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
|+.++.+.+...+.. ++ .++++|.||+|+|..|+.+
T Consensus 214 v~~i~~~~~v~~v~~--~~--------~~i~~d~vi~a~G~~p~~~ 249 (447)
T 1nhp_A 214 VERYEGDGRVQKVVT--DK--------NAYDADLVVVAVGVRPNTA 249 (447)
T ss_dssp EEEEECSSBCCEEEE--SS--------CEEECSEEEECSCEEESCG
T ss_pred EEEEEccCcEEEEEE--CC--------CEEECCEEEECcCCCCChH
Confidence 888887643212221 11 3789999999999988754
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.1e-06 Score=84.17 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=69.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----------------------------CC-
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------------------------SF- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----------------------------~~- 282 (499)
+|+|||||++|+.+|..|++.+ .+|+++++.+... .+
T Consensus 29 dViIIGgG~AGl~aA~~La~~G--------------~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~ 94 (417)
T 3v76_A 29 DVVIIGAGAAGMMCAIEAGKRG--------------RRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFC 94 (417)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHH
Confidence 8999999999999999999877 8899998753210 00
Q ss_pred ------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcE
Q 010845 283 ------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTE 321 (499)
Q Consensus 283 ------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~ 321 (499)
...+.+.+.+.+++.||+++.+ +|++++. + .|.+.+| +
T Consensus 95 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~ 173 (417)
T 3v76_A 95 KSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-T 173 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-E
T ss_pred HHHHHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-E
Confidence 1245666777788889999998 8888853 3 3556666 8
Q ss_pred EeeeEEEEcCCCCc
Q 010845 322 VPYGLLVWSTGVGP 335 (499)
Q Consensus 322 i~~D~vi~a~G~~p 335 (499)
+.+|.||+|+|..+
T Consensus 174 i~ad~VIlAtG~~S 187 (417)
T 3v76_A 174 VDAASLVVASGGKS 187 (417)
T ss_dssp EEESEEEECCCCSS
T ss_pred EEeeEEEECCCCcc
Confidence 99999999999987
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.19 E-value=4e-06 Score=84.40 Aligned_cols=94 Identities=24% Similarity=0.351 Sum_probs=72.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC--------------CHHHHHHHHHHHHh
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF--------------DDRLRHYATTQLSK 296 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~--------------~~~~~~~~~~~l~~ 296 (499)
++|+|||||+.|+.+|..|++.+. +.+|+++++.+.++.. ...+.....+.+++
T Consensus 10 ~~vvIIGaG~aGl~aA~~L~~~g~------------~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (415)
T 3lxd_A 10 ADVVIVGAGHGGAQAAIALRQNGF------------EGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWED 77 (415)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC------------CSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHH
T ss_pred CcEEEECChHHHHHHHHHHHccCc------------CCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHH
Confidence 489999999999999999988761 1459999986432211 12222233566778
Q ss_pred CCCEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.||+++.+ ++..++.+ .|.+.+|+++.+|.+|+|||.+|.
T Consensus 78 ~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~ 120 (415)
T 3lxd_A 78 KAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPR 120 (415)
T ss_dssp TTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECC
T ss_pred CCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccC
Confidence 99999999 89999875 688889999999999999998876
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-05 Score=79.78 Aligned_cols=90 Identities=16% Similarity=0.310 Sum_probs=69.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce-EEEEEeCCCc--------------CCC-------C-------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEI--------------LSS-------F------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~--------------l~~-------~------- 282 (499)
+|+|||||+.|+.+|..|++.+ . +|+++++..+ .+. +
T Consensus 6 ~vvIIGaG~aGl~aA~~l~~~g--------------~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 71 (369)
T 3d1c_A 6 KVAIIGAGAAGIGMAITLKDFG--------------ITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAIS 71 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSS
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhcc
Confidence 7999999999999999998866 6 8999987530 000 0
Q ss_pred ---------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 283 ---------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 283 ---------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
...+..++.+.+++.|++++.+ +|.+++.+ .|.+.++ ++.+|.||+|+|..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 72 MDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp TTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence 0345566777778899999998 78888753 3555565 6899999999999765
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.2e-06 Score=79.64 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=71.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc------------CCCC----CHHHHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF----DDRLRHYATTQL 294 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~------------l~~~----~~~~~~~~~~~l 294 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++... .|.+ ..++.+.+.+.+
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSG--------------FSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHA 82 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHH
Confidence 48999999999999999999876 88999997421 1221 245667777888
Q ss_pred HhCCCEEEeCceEEEe--CC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 295 SKSGVRLVRGIVKDVD--SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~gV~v~~~~v~~v~--~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.|++++.+++.+++ .+ .|.+ +++++.+|.+|+|+|..|.
T Consensus 83 ~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~ 127 (319)
T 3cty_A 83 ANYAKIREGVEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK 127 (319)
T ss_dssp HTTSEEEETCCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC
T ss_pred HHcCCEEEEeeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc
Confidence 8899999887777775 34 3544 6678999999999998775
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=90.38 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 4799999999999999999999999999999986
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.9e-06 Score=85.77 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+++|+|||||++||++|..|++.|++|+|||+.+..
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~ 46 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER 46 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 34579999999999999999999999999999988643
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.1e-06 Score=84.07 Aligned_cols=94 Identities=26% Similarity=0.373 Sum_probs=70.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHH-HHHH---------HHHhCCCE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH-YATT---------QLSKSGVR 300 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~-~~~~---------~l~~~gV~ 300 (499)
.+|+|||||+.|+.+|..|++.+. +.+|+++++...++...+.+.. .+.. .+++.||+
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~------------~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (408)
T 2gqw_A 8 APVVVLGAGLASVSFVAELRQAGY------------QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVE 75 (408)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTC------------CSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCE
T ss_pred CcEEEECChHHHHHHHHHHHccCC------------CCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCE
Confidence 489999999999999999988761 1369999987533321111111 1110 35567999
Q ss_pred EEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 301 LVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 301 v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.+ +|..++. ..|.+++|+++.+|.+|+|||.+|.
T Consensus 76 ~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~ 114 (408)
T 2gqw_A 76 WLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR 114 (408)
T ss_dssp EEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred EEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCC
Confidence 9999 6999986 4788888989999999999999886
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.9e-06 Score=80.87 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=72.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC----C-Cc------------CCCC-----CHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----N-EI------------LSSF-----DDRLRH 288 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~----~-~~------------l~~~-----~~~~~~ 288 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++ . .. .|.+ ..++.+
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g--------------~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAE--------------LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTD 74 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHH
Confidence 48999999999999999999876 88999987 2 11 1222 246777
Q ss_pred HHHHHHHhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 289 YATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 289 ~~~~~l~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+++.|++++.+.+.+++.+ .|.+ +++++.+|.+|+|+|.+|.
T Consensus 75 ~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~ 125 (333)
T 1vdc_A 75 KFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK 125 (333)
T ss_dssp HHHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence 778888899999998888888653 3555 7788999999999999875
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-06 Score=81.75 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~ 97 (499)
.++|+|||||++|+++|..|++. |++|+|||+.+..
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~ 116 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP 116 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence 47999999999999999999986 9999999998654
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.2e-06 Score=78.70 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=72.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc------------CCCC-----CHHHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~------------l~~~-----~~~~~~~~~~~ 293 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++... .|.+ .+++.+++.+.
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEH 71 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--------------CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHH
Confidence 48999999999999999998866 78999985311 1222 24677777888
Q ss_pred HHhCCCEEEeCceEEEeCC--eEE-ECCCcEEeeeEEEEcCCCCcc
Q 010845 294 LSKSGVRLVRGIVKDVDSQ--KLI-LNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~~~--~v~-~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.|++++.+.+..++.+ .+. +.+++++.+|.+|+|+|..|.
T Consensus 72 ~~~~~~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~ 117 (320)
T 1trb_A 72 ATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117 (320)
T ss_dssp HHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred HHHCCCEEEEeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcC
Confidence 8899999998888888753 333 567889999999999998775
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=77.27 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=72.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc----C-------------CCC-----CHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L-------------SSF-----DDRLRHY 289 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~----l-------------~~~-----~~~~~~~ 289 (499)
.|+|||||+.|+.+|..+++.+ .+|+++++... + |.+ ++++.+.
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g--------------~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~ 71 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSS--------------LKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMN 71 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHH
Confidence 6999999999999999999877 88999987421 0 122 2467777
Q ss_pred HHHHHHhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 290 ATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 290 ~~~~l~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+.+++.++++....+.....+ .+.+.++.++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~ 122 (314)
T 4a5l_A 72 MRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAK 122 (314)
T ss_dssp HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEEC
T ss_pred HHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEccccccc
Confidence 88888999999988866665443 456678889999999999998875
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.5e-06 Score=83.03 Aligned_cols=100 Identities=24% Similarity=0.367 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.-. .....+...+.+. +. ..++.++.+ +|
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------~~~~~~~~~l~~~---l~-~~gv~i~~~~~v 210 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG----------LLHPAAAKAVQAG---LE-GLGVRFHLGPVL 210 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------TSCHHHHHHHHHH---HH-TTTCEEEESCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc----------ccCHHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence 578999999999999999999999999999998753211 0011111222222 22 357777664 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+.++.+.+.+.+... ++ .++++|.||+|+|..|+.
T Consensus 211 ~~i~~~~~~~~v~~~-~g--------~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 211 ASLKKAGEGLEAHLS-DG--------EVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp EEEEEETTEEEEEET-TS--------CEEEESEEEECSCEEECC
T ss_pred EEEEecCCEEEEEEC-CC--------CEEECCEEEECcCCCcCH
Confidence 888766555544431 12 379999999999988765
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=5.6e-06 Score=84.38 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.-. . ..++...+.+. +. ..++.++. .+|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~-~~~~~~~l~~~---l~-~~gv~i~~~~~v 234 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG----------F-EKQMAAIIKKR---LK-KKGVEVVTNALA 234 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------S-CHHHHHHHHHH---HH-HTTCEEEESEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc----------c-CHHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 478999999999999999999999999999998753210 0 01111222222 22 25777766 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+...+.+....++ +..++++|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~~~v~~~~~g------~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 235 KGAEEREDGVTVTYEANG------ETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp EEEEEETTEEEEEEEETT------EEEEEEESEEEECSCEEESCS
T ss_pred EEEEEeCCeEEEEEEeCC------ceeEEEcCEEEECcCCCcccC
Confidence 888866554444321111 135799999999999998764
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.9e-06 Score=86.51 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..++|+|||||++||++|..|++.|++|+|||+.+..
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~ 47 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR 47 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4579999999999999999999999999999987643
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-06 Score=89.36 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+|||||||+|||++|..|++.|++|+|||+.+..
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 161 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI 161 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 579999999999999999999999999999998654
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=79.70 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=69.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-----------------CC------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-----------------SS------------ 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-----------------~~------------ 281 (499)
+|+|||||++|+.+|..+++.+ .+|+++++.+ +. ..
T Consensus 6 dViIIGgG~aGl~aA~~la~~G--------------~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~ 71 (401)
T 2gqf_A 6 ENIIIGAGAAGLFCAAQLAKLG--------------KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFV 71 (401)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTST
T ss_pred CEEEECCcHHHHHHHHHHHhCC--------------CCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHH
Confidence 7999999999999999999876 7889988753 20 00
Q ss_pred -----------------------------------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe-C-----Ce--EEEC
Q 010845 282 -----------------------------------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD-S-----QK--LILN 317 (499)
Q Consensus 282 -----------------------------------~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~-~-----~~--v~~~ 317 (499)
....+.+.+.+.+++.||+++.+ +|+++. + +. |.++
T Consensus 72 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~ 151 (401)
T 2gqf_A 72 KSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN 151 (401)
T ss_dssp HHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET
T ss_pred HHHHHhCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEEC
Confidence 12345566777788899999998 888875 2 33 4455
Q ss_pred CCcEEeeeEEEEcCCCCcc
Q 010845 318 DGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 318 ~g~~i~~D~vi~a~G~~p~ 336 (499)
++ ++.+|.||+|+|..+.
T Consensus 152 ~g-~i~ad~VVlAtG~~s~ 169 (401)
T 2gqf_A 152 ST-QWQCKNLIVATGGLSM 169 (401)
T ss_dssp TE-EEEESEEEECCCCSSC
T ss_pred CC-EEECCEEEECCCCccC
Confidence 55 7999999999999984
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=77.61 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=66.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc----C---CC-------CCHHHHHHHHHHHHhC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L---SS-------FDDRLRHYATTQLSKS 297 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~----l---~~-------~~~~~~~~~~~~l~~~ 297 (499)
.|+|||+|+.|+.+|..+++.+ .+|+++++... . +. .++++.+...+.+.+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRAR--------------KQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKY 73 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhc
Confidence 6999999999999999998876 89999997521 1 11 1345666666666665
Q ss_pred C-CEEEeCceEEEeC---C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 G-VRLVRGIVKDVDS---Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 g-V~v~~~~v~~v~~---~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+ +.++...+..+.. + .+.+.+|+++.+|.||+|||.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~ 118 (304)
T 4fk1_A 74 PSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE 118 (304)
T ss_dssp TTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE
T ss_pred CCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc
Confidence 4 5566555555532 1 577889999999999999999875
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=83.76 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=74.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---CcC--------C----CCCHHHHHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL--------S----SFDDRLRHYATTQLS 295 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~l--------~----~~~~~~~~~~~~~l~ 295 (499)
.+|+|||||+.|+.+|..+++.+ .+|+++++. ... + ...+++...+.+.++
T Consensus 213 ~dVvIIGgG~AGl~aA~~la~~G--------------~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (521)
T 1hyu_A 213 YDVLIVGSGPAGAAAAVYSARKG--------------IRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVS 278 (521)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHhCC--------------CeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999876 789999752 111 0 123567788888899
Q ss_pred hCCCEEEeC-ceEEEeCC-------eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~-------~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.||+++.+ +|.+++.+ .|.+++|+++.+|.+|+|+|.+|.
T Consensus 279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~ 327 (521)
T 1hyu_A 279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR 327 (521)
T ss_dssp TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 999999999 89999642 477788889999999999998775
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-06 Score=86.32 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=31.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 6899999999999999999999999999998763
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.3e-06 Score=83.36 Aligned_cols=94 Identities=27% Similarity=0.440 Sum_probs=66.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------CC------CHHHHHHHHHHH-Hh
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-------SF------DDRLRHYATTQL-SK 296 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-------~~------~~~~~~~~~~~l-~~ 296 (499)
++|+|||||+.|+.+|..|++.+ ++.+|+++++.+.+. .+ ...+.....+.+ ++
T Consensus 4 ~~VvIIGgG~aGl~aA~~L~~~~------------~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 71 (449)
T 3kd9_A 4 KKVVIIGGGAAGMSAASRVKRLK------------PEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKK 71 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC------------TTSEEEEECSSSCCC------------------------CTHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHHhC------------cCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHh
Confidence 48999999999999999998762 127999999874221 11 111222222334 67
Q ss_pred CCCEEEeC-ceEEEeCCe--EEECCC-cEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDSQK--LILNDG-TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~~--v~~~~g-~~i~~D~vi~a~G~~p~ 336 (499)
.||+++.+ ++..++.+. +.+.++ .++.+|.+|+|||.+|.
T Consensus 72 ~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~ 115 (449)
T 3kd9_A 72 RGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ 115 (449)
T ss_dssp TTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC
T ss_pred cCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC
Confidence 89999999 899998763 555566 48999999999998875
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-06 Score=89.55 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
..+.+.+.+.+++.|++|+++ +|++|.. + +|+++||+++.||.||.+++..
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 467788888999999999999 8999853 3 5889999999999999988754
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1e-05 Score=79.96 Aligned_cols=90 Identities=32% Similarity=0.486 Sum_probs=67.7
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCH-------------HHHHHHHHHHHhC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD-------------RLRHYATTQLSKS 297 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~-------------~~~~~~~~~l~~~ 297 (499)
.+++|||||+.|+.+|..|++. + +|+++++.+.++...+ ++.....+.+++.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~--------------g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 73 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQT--------------Y-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKR 73 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTT--------------S-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHhhc--------------C-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhC
Confidence 4899999999999999998642 2 8999998743221111 1112234566778
Q ss_pred CCEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
||+++.+ ++..++.+ .|. .+|+++.+|.+|+|||.+|.
T Consensus 74 ~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~ 114 (367)
T 1xhc_A 74 GIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAR 114 (367)
T ss_dssp TEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEEC
T ss_pred CcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCC
Confidence 9999999 79999865 455 67889999999999999886
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=81.93 Aligned_cols=90 Identities=22% Similarity=0.415 Sum_probs=68.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
+|+|||||+.|+.+|..+++.+ .+|+++++..+..
T Consensus 6 dVvIIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~ 71 (463)
T 2r9z_A 6 DLIAIGGGSGGLAVAEKAAAFG--------------KRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGV 71 (463)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTB
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CcEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCc
Confidence 7999999999999999998866 8999999864210
Q ss_pred -----CCC-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 281 -----SFD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 281 -----~~~-~-----------~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+ + .+...+.+.+++.||+++.+.+..++...|.+ +|+++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~ 143 (463)
T 2r9z_A 72 QASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPI 143 (463)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEEC
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCC
Confidence 000 0 11122334457789999999777788888888 7788999999999998876
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.3e-06 Score=83.28 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. + + .++...+.+. +. ..+++++. .+|
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--~--------~-~~~~~~l~~~---l~-~~gv~i~~~~~v 247 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS--M--------D-GEVAKATQKF---LK-KQGLDFKLSTKV 247 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS--S--------C-HHHHHHHHHH---HH-HTTCEEECSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc--c--------C-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 478999999999999999999999999999998753210 0 0 1111222222 22 25777766 488
Q ss_pred EEEEC--CCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDT--DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~--~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++. +.+.+.+...+. ..++..++++|.||+|+|..|+..
T Consensus 248 ~~i~~~~~~~~~~v~~~~~----~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 248 ISAKRNDDKNVVEIVVEDT----KTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp EEEEEETTTTEEEEEEEET----TTTEEEEEEESEEEECSCEEECCT
T ss_pred EEEEEecCCCeEEEEEEEc----CCCCceEEECCEEEECCCCCcCCC
Confidence 88876 555443322100 001135799999999999998764
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-05 Score=78.75 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=69.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
+|+|||||++|+.+|..|++.+ .+|+++++.....
T Consensus 8 dVvIVGaG~aGl~~A~~L~~~G--------------~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~ 73 (399)
T 2x3n_A 8 DVLINGCGIGGAMLAYLLGRQG--------------HRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGR 73 (399)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCE
T ss_pred CEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCC
Confidence 7999999999999999999866 6666666531110
Q ss_pred ------------------------------CCCHHHHHHHHHHHHhC-CCEEEeC-ceEEEeCC------eEEECCCcEE
Q 010845 281 ------------------------------SFDDRLRHYATTQLSKS-GVRLVRG-IVKDVDSQ------KLILNDGTEV 322 (499)
Q Consensus 281 ------------------------------~~~~~~~~~~~~~l~~~-gV~v~~~-~v~~v~~~------~v~~~~g~~i 322 (499)
.....+.+.+.+.+++. |++++.+ +|++++.+ .|++++|+++
T Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~ 153 (399)
T 2x3n_A 74 VRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVL 153 (399)
T ss_dssp EECEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cceeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEE
Confidence 00124566677777777 9999998 89888642 5677888899
Q ss_pred eeeEEEEcCCCCcc
Q 010845 323 PYGLLVWSTGVGPS 336 (499)
Q Consensus 323 ~~D~vi~a~G~~p~ 336 (499)
.+|.||.|+|..+.
T Consensus 154 ~ad~vV~AdG~~s~ 167 (399)
T 2x3n_A 154 RPRVVVGADGIASY 167 (399)
T ss_dssp EEEEEEECCCTTCH
T ss_pred ECCEEEECCCCChH
Confidence 99999999999875
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=80.14 Aligned_cols=91 Identities=25% Similarity=0.466 Sum_probs=69.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC----------------------------C
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------F 282 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~----------------------------~ 282 (499)
.+|+|||||+.|+.+|..+++.+ .+|++++++++... +
T Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~ 70 (450)
T 1ges_A 5 YDYIAIGGGSGGIASINRAAMYG--------------QKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDY 70 (450)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGG
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999998766 89999998642100 0
Q ss_pred ---------C------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 283 ---------D------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 283 ---------~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+ ..+...+.+.+++.||+++.+.+..++...|.+ +|+++.+|.+|+|||.+|.
T Consensus 71 g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~ 144 (450)
T 1ges_A 71 GFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPS 144 (450)
T ss_dssp TEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEEC
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE-CCEEEEeCEEEECCCCCCC
Confidence 0 011112234457789999999777788888888 7788999999999998875
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.3e-06 Score=84.64 Aligned_cols=103 Identities=12% Similarity=0.094 Sum_probs=68.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. . ..++...+.+. +. ..+++++.+ +|
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~----------~-~~~~~~~l~~~---l~-~~gV~i~~~~~v 249 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG----------A-DRDLVKVWQKQ---NE-YRFDNIMVNTKT 249 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT----------S-CHHHHHHHHHH---HG-GGEEEEECSCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc----------c-CHHHHHHHHHH---HH-hcCCEEEECCEE
Confidence 578999999999999999999999999999998763210 0 11111222222 22 257777664 88
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..++.+.+.+.+...+.+ +++.++.+|.||+|+|..|+.
T Consensus 250 ~~i~~~~~~~~v~~~~~~-----~~g~~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 250 VAVEPKEDGVYVTFEGAN-----APKEPQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp EEEEEETTEEEEEEESSS-----CCSSCEEESCEEECCCEEECG
T ss_pred EEEEEcCCeEEEEEeccC-----CCceEEEcCEEEECcCCCcCC
Confidence 888766554433321100 001368899999999998875
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-05 Score=80.32 Aligned_cols=94 Identities=16% Similarity=0.261 Sum_probs=68.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----CCC----------HHHHHHHHHHHHh
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD----------DRLRHYATTQLSK 296 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----~~~----------~~~~~~~~~~l~~ 296 (499)
++|+|||||+.|+.+|..|++.. ++.+|+++++.+.++ .+. .++.....+.+++
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~------------~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKY------------PQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRR 70 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC------------SSSEEEEECSSSCCSSCCC----------------CCCCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhhC------------cCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHH
Confidence 38999999999999999998762 128999999874222 110 1111113466788
Q ss_pred CCCEEEeC-ceEEEeCC--eEEE---CCCcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDSQ--KLIL---NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~--~v~~---~~g~~i~~D~vi~a~G~~p~ 336 (499)
.|++++.+ +|.+++.+ .+.+ .+++++.+|.+|+|||.+|.
T Consensus 71 ~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~ 116 (452)
T 3oc4_A 71 QKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQF 116 (452)
T ss_dssp TTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBC
T ss_pred CCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccC
Confidence 99999988 89998764 5555 25568999999999999886
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.1e-06 Score=85.54 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=68.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
+++++|||||+.|+..|..+++.|.+|||+++...+. . . ..++...+.+. +.. .++.++.+ .+
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~------~-----~-D~ei~~~l~~~---l~~-~gi~~~~~~~v 286 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR------G-----F-DQQCAVKVKLY---MEE-QGVMFKNGILP 286 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST------T-----S-CHHHHHHHHHH---HHH-TTCEEEETCCE
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc------c-----c-chhHHHHHHHH---HHh-hcceeecceEE
Confidence 4789999999999999999999999999998754211 0 0 11222223332 222 56776654 67
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..+......+.+...+ ...+.+|.|++|+|-+|+..
T Consensus 287 ~~~~~~~~~~~v~~~~---------~~~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 287 KKLTKMDDKILVEFSD---------KTSELYDTVLYAIGRKGDID 322 (542)
T ss_dssp EEEEEETTEEEEEETT---------SCEEEESEEEECSCEEESCG
T ss_pred EEEEecCCeEEEEEcC---------CCeEEEEEEEEcccccCCcc
Confidence 7777777776665422 13678999999999998864
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=81.31 Aligned_cols=91 Identities=23% Similarity=0.275 Sum_probs=72.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
.|+|||||+.|+.+|..|++.+ .+|+++++..+-.
T Consensus 28 DVvVIGgG~aGl~aA~~la~~G--------------~~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~ 93 (484)
T 3o0h_A 28 DLFVIGSGSGGVRAARLAGALG--------------KRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGW 93 (484)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred CEEEECcCHHHHHHHHHHHhCc--------------CEEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCc
Confidence 7999999999999999999887 8999999843210
Q ss_pred -----CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEEC-CCcEEeeeEEEEcCCCCcc
Q 010845 281 -----SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 281 -----~~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~-~g~~i~~D~vi~a~G~~p~ 336 (499)
.++ ..+...+.+.+++.||+++.+.+..++...+.+. +++++.+|.+|+|||..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~ 167 (484)
T 3o0h_A 94 KYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIV 167 (484)
T ss_dssp CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEEC
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcc
Confidence 000 1223344556778899999998888888889887 7889999999999998876
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=8.5e-06 Score=83.48 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.-.. .+ .++...+.+. +. ..+++++. .+|
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------~~-~~~~~~l~~~---l~-~~Gv~i~~~~~v 243 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVG---------ID-MEISKNFQRI---LQ-KQGFKFKLNTKV 243 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSS---------CC-HHHHHHHHHH---HH-HTTCEEECSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcc---------cC-HHHHHHHHHH---HH-HCCCEEEeCceE
Confidence 4789999999999999999999999999999987642100 00 1111122222 22 25777765 588
Q ss_pred EEEECCCCE-EEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.+. +.+..... ..++..++++|.||+|+|..|+..
T Consensus 244 ~~i~~~~~~~~~v~~~~~----~~~~~~~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 244 TGATKKSDGKIDVSIEAA----SGGKAEVITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp EEEEECTTSCEEEEEEET----TSCCCEEEEESEEEECSCEEECCT
T ss_pred EEEEEcCCceEEEEEEec----CCCCceEEEcCEEEECcCCCcCCC
Confidence 888765533 43331100 001125799999999999998764
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1e-05 Score=83.31 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=67.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-E
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (499)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.-. .. ..++...+.+. + ...+++++.+ +
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~---------~~-~~~~~~~l~~~---l-~~~GV~i~~~~~ 258 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG---------YY-DRDLTDLMAKN---M-EEHGIQLAFGET 258 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT---------TS-CHHHHHHHHHH---H-HTTTCEEEETCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh---------HH-HHHHHHHHHHH---H-HhCCeEEEeCCE
Confidence 3578999999999999999999999999999998753210 00 01111222222 2 2357887764 7
Q ss_pred EEEEECCCC--EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 140 CAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 140 v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
|+.++.+.+ .+.+ + + .++++|.||+|+|..|+..
T Consensus 259 v~~i~~~~~v~~v~~-~---g--------~~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 259 VKEVAGNGKVEKIIT-D---K--------NEYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp EEEEECSSSCCEEEE-S---S--------CEEECSEEEECCCEEECCG
T ss_pred EEEEEcCCcEEEEEE-C---C--------cEEECCEEEECCCCCcChH
Confidence 888876443 2333 1 2 3799999999999988754
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.6e-05 Score=73.20 Aligned_cols=91 Identities=21% Similarity=0.221 Sum_probs=69.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc----C--------CCC----CHHHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L--------SSF----DDRLRHYATTQLS 295 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~----l--------~~~----~~~~~~~~~~~l~ 295 (499)
.|+|||||+.|+.+|..+++.+ .+|++++++.+ + |.+ .+++.....+...
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g--------------~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~ 73 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRAN--------------LKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAK 73 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHh
Confidence 6999999999999999999877 89999997531 1 222 2466667777778
Q ss_pred hCCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.++.+..+ .+..... ..+...+++++.+|.+|+|||.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~ 117 (312)
T 4gcm_A 74 KFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYK 117 (312)
T ss_dssp HTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEEC
T ss_pred hccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccC
Confidence 888888877 4333332 3566677889999999999998876
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.8e-05 Score=78.24 Aligned_cols=91 Identities=22% Similarity=0.357 Sum_probs=68.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC-------------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------------------------- 279 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l------------------------------- 279 (499)
.+|+|||||+.|+.+|..+++.+ .+|++++++.+-
T Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~ 71 (458)
T 1lvl_A 6 TTLLIIGGGPGGYVAAIRAGQLG--------------IPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPS 71 (458)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CEEEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhccccc
Confidence 48999999999999999998876 899999985320
Q ss_pred -CCC-------C-HHH-----------HHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 280 -SSF-------D-DRL-----------RHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 280 -~~~-------~-~~~-----------~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+ + +++ .....+.+++.||+++.+....+++..|.+++ +++.+|.+|+|||.+|.
T Consensus 72 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~lviATGs~p~ 147 (458)
T 1lvl_A 72 PLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG-QRIQCEHLLLATGSSSV 147 (458)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT-EEEECSEEEECCCEEEC
T ss_pred ccCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee-EEEEeCEEEEeCCCCCC
Confidence 000 1 011 11123566788999999965557777888876 78999999999999885
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.3e-05 Score=81.58 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=71.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC--------C-------------CC------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--------S-------------SF------ 282 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l--------~-------------~~------ 282 (499)
.+|+|||||++|+.+|..|.+.+ .+|+++++.. +. | .+
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G--------------~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~ 87 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQG--------------LTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQ 87 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCccccCCCCCceeCCCchhccccccccccc
Confidence 48999999999999999998866 7999999842 21 0 01
Q ss_pred ----------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEe--CC----eEEECCCcEEeeeEEEEcCCC
Q 010845 283 ----------DDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 283 ----------~~~~~~~~~~~l~~~gV--~v~~~-~v~~v~--~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.+++.+++.+.+++.|+ +++.+ +|.+++ ++ .|.+.+|+++.+|.||+|+|.
T Consensus 88 ~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~ 157 (549)
T 4ap3_A 88 EWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGP 157 (549)
T ss_dssp HCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred CCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCC
Confidence 14677788888888898 78888 888874 34 688889999999999999994
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=1e-05 Score=84.86 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
...+|||||||++||++|..|++.|++|+|||+.+..
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~ 156 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 156 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3468999999999999999999999999999998654
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=7.9e-06 Score=84.11 Aligned_cols=94 Identities=21% Similarity=0.361 Sum_probs=67.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHH--------HH-----------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY--------AT----------- 291 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~--------~~----------- 291 (499)
.+|+|||||+.|+.+|..|.+.. .+.+|+++++.+.++...+.++.. ..
T Consensus 12 ~~vvIIGgG~AGl~aA~~L~~~~------------~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~ 79 (493)
T 1m6i_A 12 VPFLLIGGGTAAFAAARSIRARD------------PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGK 79 (493)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHS------------TTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSC
T ss_pred CCEEEECChHHHHHHHHHHHhcC------------CCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccc
Confidence 48999999999999999997652 128999999874332111100000 00
Q ss_pred ---------------HH---HHhCCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 292 ---------------TQ---LSKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 292 ---------------~~---l~~~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+. +.+.||+++.+ +|.+++. ..|.+++|+++.+|.+|+|||.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~ 145 (493)
T 1m6i_A 80 ERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPR 145 (493)
T ss_dssp EEESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEC
T ss_pred cccccccchHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCC
Confidence 00 12468999998 8998874 5788999999999999999999886
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.8e-05 Score=74.81 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=62.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC------C----------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------F---------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~------~---------------------- 282 (499)
.|+|||||++|.-+|..|++.+ .+|+++|+. .+-.. +
T Consensus 6 DViIVGaGpaGl~~A~~La~~G--------------~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~ 71 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYG--------------LKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVK 71 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccc
Confidence 5999999999999999999977 677777753 11000 0
Q ss_pred -----------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCeEE---E-CCC--cEEee
Q 010845 283 -----------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQKLI---L-NDG--TEVPY 324 (499)
Q Consensus 283 -----------------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~v~---~-~~g--~~i~~ 324 (499)
...+...+.+...+.|++++.+ ++.++. ++.+. . .++ .++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a 151 (397)
T 3oz2_A 72 GARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRA 151 (397)
T ss_dssp EEEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred eEEEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEE
Confidence 0234556666777889999988 776653 33222 2 233 36899
Q ss_pred eEEEEcCCCCc
Q 010845 325 GLLVWSTGVGP 335 (499)
Q Consensus 325 D~vi~a~G~~p 335 (499)
|+||-|.|...
T Consensus 152 ~~vIgAdG~~S 162 (397)
T 3oz2_A 152 KMVIAADGFES 162 (397)
T ss_dssp EEEEECCCTTC
T ss_pred eEEEeCCcccc
Confidence 99999999764
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-05 Score=82.65 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=68.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.-. . ..++...+.+. +. ..+++++. .+|
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~-~~~~~~~l~~~---l~-~~gv~i~~~~~v 235 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN----------E-DADVSKEIEKQ---FK-KLGVTILTATKV 235 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------S-CHHHHHHHHHH---HH-HHTCEEECSCEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc----------c-CHHHHHHHHHH---HH-HcCCEEEeCcEE
Confidence 478999999999999999999999999999998753210 0 01111122222 22 24677766 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+...+.+....++ +..++++|.+|+|+|..|+..
T Consensus 236 ~~i~~~~~~~~v~~~~~g------~~~~~~~D~vv~a~G~~p~~~ 274 (464)
T 2a8x_A 236 ESIADGGSQVTVTVTKDG------VAQELKAEKVLQAIGFAPNVE 274 (464)
T ss_dssp EEEEECSSCEEEEEESSS------CEEEEEESEEEECSCEEECCS
T ss_pred EEEEEcCCeEEEEEEcCC------ceEEEEcCEEEECCCCCccCC
Confidence 888765543433321111 125799999999999998764
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.4e-05 Score=81.27 Aligned_cols=89 Identities=15% Similarity=0.232 Sum_probs=70.4
Q ss_pred ccEEEeCcChHHHHHHHHHH-HHHHHHHHHhcCCCCCceEEEEEeCCC-cC--------CC-------------C-----
Q 010845 231 LHCVVVGGGPTGVEFSGELS-DFIMRDVRQRYSHVKDYIHVTLIEANE-IL--------SS-------------F----- 282 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~-~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l--------~~-------------~----- 282 (499)
.+|+|||||++|+.+|..|+ +.+ .+|+++++.. +. |. +
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G--------------~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~ 74 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELG--------------LTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLL 74 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC--------------CCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC--------------CCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccc
Confidence 38999999999999999998 655 7899999852 21 11 1
Q ss_pred -----------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEe--CC----eEEECCCcEEeeeEEEEcCCC
Q 010845 283 -----------DDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 283 -----------~~~~~~~~~~~l~~~gV--~v~~~-~v~~v~--~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.+++.+++.+.+++.|+ +++.+ +|.+++ ++ .|.+++|+++.+|.||+|+|.
T Consensus 75 ~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~ 145 (540)
T 3gwf_A 75 QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL 145 (540)
T ss_dssp HHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred cCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence 23567778888888898 78887 788775 33 578889999999999999995
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.6e-05 Score=78.89 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=65.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHH---------------HHHHHHHHh
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLR---------------HYATTQLSK 296 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~---------------~~~~~~l~~ 296 (499)
||+|||||+.|+.+|..|++.+ .+.+|+++++++..+.....+. ....+.+++
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g------------~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLD------------KESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDR 69 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHC------------SSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCC------------CCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHh
Confidence 7999999999999999998765 2268999998642221111111 112344567
Q ss_pred CCCEEEeC-ceEEEeCC--eEEECC-----CcEEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDSQ--KLILND-----GTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~--~v~~~~-----g~~i~~D~vi~a~G~~p~ 336 (499)
.||+++.+ +|..++.+ .+.+.+ +.++.+|.+|+|||.+|+
T Consensus 70 ~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~ 117 (437)
T 4eqs_A 70 KQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN 117 (437)
T ss_dssp HCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEEC
T ss_pred cCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccc
Confidence 89999998 89999764 344322 246899999999999876
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.5e-05 Score=79.71 Aligned_cols=92 Identities=20% Similarity=0.355 Sum_probs=67.8
Q ss_pred ccEEEeCcChHHHHHHHHHHH---HHHHHHHHhcCCCCCceE---EEEEeCC-CcC------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSD---FIMRDVRQRYSHVKDYIH---VTLIEAN-EIL------------------------ 279 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~---~~~~~~~~~~~~~~~~~~---Vtlv~~~-~~l------------------------ 279 (499)
++|+|||||++|+.+|..|++ .+ .+ |+++++. .+.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--------------~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~ 68 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKG--------------AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYR 68 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTT--------------CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcC--------------CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCcccc
Confidence 389999999999999999987 44 66 9999975 221
Q ss_pred -------------CCC---------------CHHHHHHHHHHHHhCCCE--EEeC-ceEEEeC--C----eEEECC---C
Q 010845 280 -------------SSF---------------DDRLRHYATTQLSKSGVR--LVRG-IVKDVDS--Q----KLILND---G 319 (499)
Q Consensus 280 -------------~~~---------------~~~~~~~~~~~l~~~gV~--v~~~-~v~~v~~--~----~v~~~~---g 319 (499)
+.+ ...+.+++.+.+++.|++ ++.+ +|.+++. + .|++.+ |
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g 148 (464)
T 2xve_A 69 YLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTD 148 (464)
T ss_dssp TCBCSSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTT
T ss_pred chhhcCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCC
Confidence 000 034566777777888998 8877 7888753 3 566654 4
Q ss_pred --cEEeeeEEEEcCC--CCcc
Q 010845 320 --TEVPYGLLVWSTG--VGPS 336 (499)
Q Consensus 320 --~~i~~D~vi~a~G--~~p~ 336 (499)
.++.+|.||+|+| ..|.
T Consensus 149 ~~~~~~~d~VVvAtG~~s~p~ 169 (464)
T 2xve_A 149 TIYSEEFDYVVCCTGHFSTPY 169 (464)
T ss_dssp EEEEEEESEEEECCCSSSSBC
T ss_pred ceEEEEcCEEEECCCCCCCCc
Confidence 5789999999999 5554
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.9e-05 Score=77.87 Aligned_cols=90 Identities=21% Similarity=0.345 Sum_probs=69.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC--------------------C----C-----
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------------------S----F----- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~--------------------~----~----- 282 (499)
.|+|||||++|+.+|..|++.+ .+|+++++..... . +
T Consensus 28 dVvIIGgG~aGl~aA~~la~~G--------------~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~ 93 (447)
T 2i0z_A 28 DVIVIGGGPSGLMAAIGAAEEG--------------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR 93 (447)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG
T ss_pred CEEEECCcHHHHHHHHHHHHCC--------------CCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChH
Confidence 7999999999999999999876 7888888652110 0 0
Q ss_pred ---------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC---eEEEC
Q 010845 283 ---------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLILN 317 (499)
Q Consensus 283 ---------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~---~v~~~ 317 (499)
...+.+.+.+.+++.||+++.+ +|.++. ++ +|.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~ 173 (447)
T 2i0z_A 94 FLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ 173 (447)
T ss_dssp GGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET
T ss_pred HHHHHHHhcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEEC
Confidence 1234455666777899999998 888875 33 36778
Q ss_pred CCcEEeeeEEEEcCCCCc
Q 010845 318 DGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 318 ~g~~i~~D~vi~a~G~~p 335 (499)
+|+++.+|.||+|+|..+
T Consensus 174 ~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 174 TGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp TCCEEECSCEEECCCCSS
T ss_pred CCCEEECCEEEECCCCCc
Confidence 888899999999999988
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.9e-06 Score=83.52 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=68.0
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CCC--CCHHHHHHHHHHHHhCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LSS--FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~~--~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+ + +|. ++.++.....+.+++.|
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~g 186 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKG--------------YEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAG 186 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCC
Confidence 4568999999999999999999877 8899999863 3 233 35677778888899999
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
|+++.+ .|. ..+.++++ .+.+|.||+|+|..+
T Consensus 187 v~~~~~~~v~----~~v~~~~~-~~~~d~vvlAtG~~~ 219 (456)
T 2vdc_G 187 VIYHPNFEVG----RDASLPEL-RRKHVAVLVATGVYK 219 (456)
T ss_dssp CEEETTCCBT----TTBCHHHH-HSSCSEEEECCCCCE
T ss_pred cEEEeCCEec----cEEEhhHh-HhhCCEEEEecCCCC
Confidence 999988 442 22333333 357999999999974
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=81.73 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- .+ ..++...+.+. +.. . +.++. .+|
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~--~~---------d~~~~~~l~~~---l~~-~-V~i~~~~~v 237 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN--LQ---------DEEMKRYAEKT---FNE-E-FYFDAKARV 237 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT--CC---------CHHHHHHHHHH---HHT-T-SEEETTCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc--cC---------CHHHHHHHHHH---Hhh-C-cEEEECCEE
Confidence 57899999999999999999999999999999876421 00 01111222222 222 3 56553 477
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
..++.+++.+.+...+. .++..++++|.||+|+|..|+...
T Consensus 238 ~~i~~~~~~v~v~~~~~-----~G~~~~i~~D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 238 ISTIEKEDAVEVIYFDK-----SGQKTTESFQYVLAATGRKANVDK 278 (492)
T ss_dssp EEEEECSSSEEEEEECT-----TCCEEEEEESEEEECSCCEESCSS
T ss_pred EEEEEcCCEEEEEEEeC-----CCceEEEECCEEEEeeCCccCCCC
Confidence 78876555444433210 012357999999999999987653
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-05 Score=79.79 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=68.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC--------------------------C----
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------------------------S---- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~--------------------------~---- 281 (499)
+|+|||||+.|+.+|..|++.+... .+ .+|+++++...+. .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~--------~~-~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ 102 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQ--------GA-LEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYS 102 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHH--------CC-CCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTS
T ss_pred CEEEECCCHHHHHHHHHHHhccccc--------Cc-ccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCC
Confidence 7999999999999999999876210 00 4799998753110 0
Q ss_pred ----------------------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---------eEEECCCc----EEeee
Q 010845 282 ----------------------FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---------KLILNDGT----EVPYG 325 (499)
Q Consensus 282 ----------------------~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---------~v~~~~g~----~i~~D 325 (499)
...++.+++....++.+++++.+ +|.+++.+ .|.+.+|+ ++.+|
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d 182 (463)
T 3s5w_A 103 FVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTR 182 (463)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEES
T ss_pred hhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeC
Confidence 01234455555566778999998 78887643 45556665 89999
Q ss_pred EEEEcCCCCcc
Q 010845 326 LLVWSTGVGPS 336 (499)
Q Consensus 326 ~vi~a~G~~p~ 336 (499)
.||+|+|..|.
T Consensus 183 ~lVlAtG~~p~ 193 (463)
T 3s5w_A 183 ALVVSPGGTPR 193 (463)
T ss_dssp EEEECCCCEEC
T ss_pred EEEECCCCCCC
Confidence 99999999775
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-05 Score=78.55 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=68.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC----------------CHHHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF----------------DDRLRHYATTQLS 295 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~----------------~~~~~~~~~~~l~ 295 (499)
+|+|||||+.|+.+|..|++.. ++.+|+++++.+.++.. ..++.....+.++
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~------------~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 69 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADH------------PDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELS 69 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC------------TTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhhC------------cCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHH
Confidence 6999999999999999998861 12899999987422111 1112222345677
Q ss_pred hCCCEEEeC-ceEEEe--CCeEEECC-----CcEEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRG-IVKDVD--SQKLILND-----GTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~--~~~v~~~~-----g~~i~~D~vi~a~G~~p~ 336 (499)
+.||+++.+ ++..++ .+.+.+.+ ++++.+|.+|+|+|.+|.
T Consensus 70 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~ 118 (452)
T 2cdu_A 70 NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT 118 (452)
T ss_dssp HTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred HcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC
Confidence 889999888 788886 35677653 467999999999998876
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.7e-05 Score=78.03 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=64.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
..++|+|||||.+|+.+|..|++.+.+ |+|+++.+.+ + ...++. ....
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~-------------l-----------------~~~~i~-~~~~ 259 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD-------------I-----------------QNESLQ-QVPE 259 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS-------------C-----------------BCSSEE-EECC
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc-------------C-----------------CCCCeE-EecC
Confidence 357899999999999999999999999 9999998653 0 012343 2456
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
|+.++.+...|++.+ | ...+.+|.||+|||..|+.+-
T Consensus 260 v~~~~~~~~~v~~~d---G-------~~~~~~D~vi~atG~~~~~~~ 296 (447)
T 2gv8_A 260 ITKFDPTTREIYLKG---G-------KVLSNIDRVIYCTGYLYSVPF 296 (447)
T ss_dssp EEEEETTTTEEEETT---T-------EEECCCSEEEECCCBCCCCCC
T ss_pred eEEEecCCCEEEECC---C-------CEeccCCEEEECCCCCcCCCC
Confidence 777765666777654 2 124789999999999988655
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=80.55 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=70.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC--------C---------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--------S--------------------- 280 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l--------~--------------------- 280 (499)
.+|+|||||++|+.+|..|.+.+ .+|+++++.. +. |
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g--------------~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~ 75 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAG--------------MKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIP 75 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSST
T ss_pred CCEEEECccHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCccccc
Confidence 37999999999999999998765 7899999863 20 1
Q ss_pred --C------CCHHHHHHHHHHHHhCCC--EEEeC-ceEEEeC--C----eEEECCCcEEeeeEEEEcCCC
Q 010845 281 --S------FDDRLRHYATTQLSKSGV--RLVRG-IVKDVDS--Q----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 281 --~------~~~~~~~~~~~~l~~~gV--~v~~~-~v~~v~~--~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
. -.+++.+++.+..++.|+ +++.+ +|.+++- + .|++++|+++.||.||+|+|.
T Consensus 76 ~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~ 145 (545)
T 3uox_A 76 EWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGP 145 (545)
T ss_dssp TCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCS
T ss_pred CCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCC
Confidence 0 125677788888888887 67777 7887752 3 678889999999999999994
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=8.5e-06 Score=84.05 Aligned_cols=91 Identities=22% Similarity=0.370 Sum_probs=58.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---------C----------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S---------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---------~---------------------- 280 (499)
+|+|||||+.|+.+|..+++.+ .+|++++++++. |
T Consensus 4 dVvIIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~ 69 (500)
T 1onf_A 4 DLIVIGGGSGGMAAARRAARHN--------------AKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGF 69 (500)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCC
Confidence 7999999999999999999876 899999987421 0
Q ss_pred ----CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECC-------------CcEEeeeEEEEcC
Q 010845 281 ----SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILND-------------GTEVPYGLLVWST 331 (499)
Q Consensus 281 ----~~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~-------------g~~i~~D~vi~a~ 331 (499)
.++ ..+...+.+.+++.||+++.+.+..++...+.+.+ ++++.+|.+|+||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAt 149 (500)
T 1onf_A 70 DTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAV 149 (500)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECC
T ss_pred ccCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECC
Confidence 001 11122233456788999998855555555666644 6689999999999
Q ss_pred CCCcc
Q 010845 332 GVGPS 336 (499)
Q Consensus 332 G~~p~ 336 (499)
|.+|.
T Consensus 150 Gs~p~ 154 (500)
T 1onf_A 150 GNKPV 154 (500)
T ss_dssp CCCBC
T ss_pred CCCCC
Confidence 99886
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3.8e-05 Score=76.04 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
.+.+.+.+.+++.|++++.+ +|.+++.+ .|.+.+| ++.+|.||+|+|.....+...++
T Consensus 165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~ 227 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLG 227 (382)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcC
Confidence 45666777888899999998 88888643 3556666 89999999999998765555544
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=80.79 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=60.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC-------CCC-------CHHH-------HHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------SSF-------DDRL-------RHY 289 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l-------~~~-------~~~~-------~~~ 289 (499)
++|+|||||+.|+.+|..|++.. ++.+|+++++.+.+ |.+ ...+ ...
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~------------~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~ 71 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLD------------PEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRD 71 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHC------------TTSEEEEECCC----------------------------------
T ss_pred CcEEEECCCHHHHHHHHHHHhhC------------cCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccC
Confidence 48999999999999999998762 12899999987421 111 1111 112
Q ss_pred HHHHHHhCCCEEEeC-ceEEEeCC--eEEECC---Cc--EEeeeEEEEcCCCCcc
Q 010845 290 ATTQLSKSGVRLVRG-IVKDVDSQ--KLILND---GT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 290 ~~~~l~~~gV~v~~~-~v~~v~~~--~v~~~~---g~--~i~~D~vi~a~G~~p~ 336 (499)
.....++.|++++.+ +|.+++.+ .+.+.+ |+ ++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~ 126 (472)
T 3iwa_A 72 PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN 126 (472)
T ss_dssp ---------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred HHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC
Confidence 222223579999988 89998764 566654 65 7999999999998875
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.1e-05 Score=73.56 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~ 97 (499)
.+|+|||||++|+++|..|++. |++|+|+|+++..
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ 102 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence 4899999999999999999987 9999999997654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-05 Score=81.65 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=68.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.- .+ ..++...+.+. +....+++++. .+|
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~---------d~~~~~~l~~~---l~~~~gv~i~~~~~v 239 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP--TL---------DEDVTNALVGA---LAKNEKMKFMTSTKV 239 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST--TS---------CHHHHHHHHHH---HHHHTCCEEECSCEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc--cC---------CHHHHHHHHHH---HhhcCCcEEEeCCEE
Confidence 47899999999999999999999999999999876421 00 01111222222 20225777776 488
Q ss_pred EEEECCCCEEEEeeec-CccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~-~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.+.+.+.... ++ +..++++|.||+|+|..|+..
T Consensus 240 ~~i~~~~~~~~v~~~~~~g------~~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 240 VGGTNNGDSVSLEVEGKNG------KRETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp EEEEECSSSEEEEEECC---------EEEEEESEEEECSCEEECCT
T ss_pred EEEEEcCCeEEEEEEcCCC------ceEEEECCEEEECCCcccCCC
Confidence 8887655433332110 11 124799999999999998764
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=9.8e-05 Score=70.92 Aligned_cols=159 Identities=15% Similarity=0.193 Sum_probs=96.4
Q ss_pred cEEEeCcChHHHHHHHHHHHH--HHHHHHHhcCCCCCceEEEEEeCCCcCC-C---------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEANEILS-S--------------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~--~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-~--------------------------- 281 (499)
+|+|||+|++|+.+|..|++. + .+|+++++..... .
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g--------------~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~ 132 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPD--------------LKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIP 132 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTT--------------SCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCC
T ss_pred CEEEECccHHHHHHHHHHHhcCCC--------------CeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcc
Confidence 899999999999999999886 5 7899999752211 0
Q ss_pred -----------CCHHHHHHHHHHHHh-CCCEEEeC-ceEEEeC------C-----eEEEC--------------CCcEEe
Q 010845 282 -----------FDDRLRHYATTQLSK-SGVRLVRG-IVKDVDS------Q-----KLILN--------------DGTEVP 323 (499)
Q Consensus 282 -----------~~~~~~~~~~~~l~~-~gV~v~~~-~v~~v~~------~-----~v~~~--------------~g~~i~ 323 (499)
....+...+.+.+.+ .||+++.+ +|.++.. + +|.+. ++.++.
T Consensus 133 ~~~~g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~ 212 (326)
T 2gjc_A 133 YEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIE 212 (326)
T ss_dssp CEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEE
T ss_pred cccCCCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEE
Confidence 012334455566666 49999988 7877631 1 23331 335799
Q ss_pred e---------------eEEEEcCCCCcc--hhccc-C---CCCCCCCCc----------eeeCCCCCCCCCCCeEEeccc
Q 010845 324 Y---------------GLLVWSTGVGPS--TLVKS-L---DLPKSPGGR----------IGIDEWLRVPSVQDVFAVGDC 372 (499)
Q Consensus 324 ~---------------D~vi~a~G~~p~--~~~~~-~---~l~~~~~G~----------i~vd~~l~~~~~~~Ifa~GD~ 372 (499)
+ |.||.|||.... .++.. + +..-.-.|- ..|+..-...-+|++|++|-.
T Consensus 213 A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~ 292 (326)
T 2gjc_A 213 LAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGME 292 (326)
T ss_dssp ESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHH
T ss_pred EeeccccccccccccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChH
Confidence 9 999999998865 22221 1 110000010 112222221258999999997
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 373 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 373 a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
+.... |.+...++...-.-.|+.+|+.|...+
T Consensus 293 ~~~~~--~~~r~g~~fg~m~~sg~~~a~~~~~~~ 324 (326)
T 2gjc_A 293 VAELD--GLNRMGPTFGAMALSGVHAAEQILKHF 324 (326)
T ss_dssp HHHHH--TCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CCCCCChhhhhhhhhhHHHHHHHHHHh
Confidence 75432 222233444445567999999887665
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.7e-05 Score=79.72 Aligned_cols=103 Identities=21% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. . ...+...+.+. + ...++.++.+ +|
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~-~~~~~~~l~~~---l-~~~Gv~v~~~~~v 244 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA----------V-DEQVAKEAQKI---L-TKQGLKILLGARV 244 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------S-CHHHHHHHHHH---H-HHTTEEEEETCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc----------c-CHHHHHHHHHH---H-HhCCCEEEECCEE
Confidence 478999999999999999999999999999998754210 0 11112222222 2 2357887764 88
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.+.+.+...+.+ + ..++++|.||+|+|..|+..
T Consensus 245 ~~i~~~~~~~~v~~~~~~-----g-~~~~~~D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 245 TGTEVKNKQVTVKFVDAE-----G-EKSQAFDKLIVAVGRRPVTT 283 (476)
T ss_dssp EEEEECSSCEEEEEESSS-----E-EEEEEESEEEECSCEEECCT
T ss_pred EEEEEcCCEEEEEEEeCC-----C-cEEEECCEEEEeeCCcccCC
Confidence 888766554443321111 1 24789999999999988764
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.8e-05 Score=80.79 Aligned_cols=91 Identities=23% Similarity=0.301 Sum_probs=70.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
.|+|||||+.|+.+|..|++.+ .+|+++++..+-.
T Consensus 7 DVvVIGaG~aGl~aA~~la~~G--------------~~V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~ 72 (463)
T 4dna_A 7 DLFVIGGGSGGVRSGRLAAALG--------------KKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGW 72 (463)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred cEEEECcCHHHHHHHHHHHhCC--------------CEEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 7999999999999999999877 8999999843110
Q ss_pred -----CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE-CCCcEEeeeEEEEcCCCCcc
Q 010845 281 -----SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 281 -----~~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~-~~g~~i~~D~vi~a~G~~p~ 336 (499)
.++ ..+...+.+.+++.||+++.+.+..++...+.+ .+++++.+|.+|+|||.+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~ 146 (463)
T 4dna_A 73 TVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPS 146 (463)
T ss_dssp EECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEEC
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcc
Confidence 000 022233445567789999999887787788888 57789999999999998775
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-05 Score=80.85 Aligned_cols=106 Identities=19% Similarity=0.178 Sum_probs=70.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. . ..++...+.+. +. ..++.++. .+|
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~-d~~~~~~l~~~---l~-~~gV~v~~~~~v 262 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG----------M-DGEVAKQLQRM---LT-KQGIDFKLGAKV 262 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS----------S-CHHHHHHHHHH---HH-HTTCEEECSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc----------C-CHHHHHHHHHH---HH-hCCCEEEECCeE
Confidence 478999999999999999999999999999998764211 0 11111222222 22 25777765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
..++.+...+.+...+.. .++..++++|.||+|+|..|+...
T Consensus 263 ~~i~~~~~~~~v~~~~~~----~g~~~~i~~D~Vi~a~G~~p~~~~ 304 (491)
T 3urh_A 263 TGAVKSGDGAKVTFEPVK----GGEATTLDAEVVLIATGRKPSTDG 304 (491)
T ss_dssp EEEEEETTEEEEEEEETT----SCCCEEEEESEEEECCCCEECCTT
T ss_pred EEEEEeCCEEEEEEEecC----CCceEEEEcCEEEEeeCCccCCCc
Confidence 888766655443321100 011357999999999999887643
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=97.88 E-value=7.1e-05 Score=78.35 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=69.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC------------------------C-----
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS------------------------S----- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~------------------------~----- 281 (499)
.|+|||||+.|+++|..+++.+ .+|+++++.. .+. .
T Consensus 30 DVIVIGgG~AGl~AAlaLAr~G--------------~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~ 95 (651)
T 3ces_A 30 DVIIIGGGHAGTEAAMAAARMG--------------QQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKA 95 (651)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHH
T ss_pred CEEEECChHHHHHHHHHHHhCC--------------CCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHH
Confidence 7999999999999999999887 8899998751 110 0
Q ss_pred -------------------------CC-HHHHHHHHHHHHh-CCCEEEeCceEEEe--CC---eEEECCCcEEeeeEEEE
Q 010845 282 -------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 282 -------------------------~~-~~~~~~~~~~l~~-~gV~v~~~~v~~v~--~~---~v~~~~g~~i~~D~vi~ 329 (499)
.+ ..+...+.+.+++ .||+++.++|.++. ++ +|.+.+|.++.+|.||+
T Consensus 96 ~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVL 175 (651)
T 3ces_A 96 IDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVL 175 (651)
T ss_dssp HHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEE
T ss_pred hhhcccchhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 00 1345556667777 69999766888884 33 46778888999999999
Q ss_pred cCCCCcc
Q 010845 330 STGVGPS 336 (499)
Q Consensus 330 a~G~~p~ 336 (499)
|+|..+.
T Consensus 176 ATGt~s~ 182 (651)
T 3ces_A 176 TVGTFLD 182 (651)
T ss_dssp CCSTTTC
T ss_pred cCCCCcc
Confidence 9998764
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.6e-05 Score=79.64 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=68.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------------------------------ 281 (499)
.|+|||||+.|+.+|..|++.+ .+|+++++...+..
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G--------------~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~ 71 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAK--------------YNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVK 71 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCC
Confidence 7999999999999999999877 89999996532210
Q ss_pred --CCH-H----------HH--HHHHHHHHhCCCEEEeCceEEEeCCe--EEECCCcE--EeeeEEEEcCCCCcc
Q 010845 282 --FDD-R----------LR--HYATTQLSKSGVRLVRGIVKDVDSQK--LILNDGTE--VPYGLLVWSTGVGPS 336 (499)
Q Consensus 282 --~~~-~----------~~--~~~~~~l~~~gV~v~~~~v~~v~~~~--v~~~~g~~--i~~D~vi~a~G~~p~ 336 (499)
++. . +. ..+.+.+++.||+++.+++..++.+. |..++|++ +.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~ 145 (466)
T 3l8k_A 72 IPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA 145 (466)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC
T ss_pred CCcCHHHHHHHHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc
Confidence 000 0 01 33444556789999988888888875 44567778 999999999998876
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.1e-05 Score=80.21 Aligned_cols=94 Identities=16% Similarity=0.257 Sum_probs=66.7
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCC--------------H-HHHHHHHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD--------------D-RLRHYATTQLS 295 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~--------------~-~~~~~~~~~l~ 295 (499)
++|+|||||+.|+.+|..|++.+ ++.+|+++++.+..+..+ . .+........+
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~------------~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLS------------ETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKA 69 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHC------------SSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhhC------------cCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHH
Confidence 38999999999999999998762 128999999874322110 0 01112233344
Q ss_pred hCCCEEEeC-ceEEEeCC--eEEECC---Cc--EEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRG-IVKDVDSQ--KLILND---GT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~--~v~~~~---g~--~i~~D~vi~a~G~~p~ 336 (499)
+.||+++.+ +|.+++.+ .+.+.+ |+ ++.+|.+|+|||.+|.
T Consensus 70 ~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~ 118 (565)
T 3ntd_A 70 RFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPI 118 (565)
T ss_dssp HHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred hcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCC
Confidence 579999988 89999764 565543 54 7899999999999876
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.4e-05 Score=84.22 Aligned_cols=97 Identities=15% Similarity=0.288 Sum_probs=69.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. + ...+...+.+. +. ..++.++. .+|
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--~---------~~~~~~~l~~~---l~-~~GV~i~~~~~v 251 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP--I---------DYEMAAYVHEH---MK-NHDVELVFEDGV 251 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT--S---------CHHHHHHHHHH---HH-HTTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc--C---------CHHHHHHHHHH---HH-HcCCEEEECCeE
Confidence 478999999999999999999999999999988753211 0 01111222222 22 25777765 578
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..++.+.+.|.+.+ + .++++|.||+|+|..|+.
T Consensus 252 ~~i~~~~~~v~~~~---g--------~~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 252 DALEENGAVVRLKS---G--------SVIQTDMLILAIGVQPES 284 (588)
T ss_dssp EEEEGGGTEEEETT---S--------CEEECSEEEECSCEEECC
T ss_pred EEEecCCCEEEECC---C--------CEEEcCEEEEccCCCCCh
Confidence 88887666776643 2 379999999999988765
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4e-05 Score=78.77 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=68.5
Q ss_pred cEEEeCcChHHHHHHHHHHH-HHHHHHHHhcCCCCCceEEEEEe---------CCCcCC---------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE---------ANEILS--------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~-~~~~~~~~~~~~~~~~~~Vtlv~---------~~~~l~--------------------- 280 (499)
+|+|||||+.|+.+|..+++ .+ .+|++++ +..+-.
T Consensus 5 dvvVIGgG~aGl~aA~~la~~~G--------------~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~ 70 (490)
T 1fec_A 5 DLVVIGAGSGGLEAGWNAASLHK--------------KRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMD 70 (490)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHC--------------CCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHcC--------------CEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHH
Confidence 79999999999999999998 76 8999999 332211
Q ss_pred -----------------CCC-HH-----------HHHHHHHHHHhC-CCEEEeCceEEEeCCeEEEC-----CC---cEE
Q 010845 281 -----------------SFD-DR-----------LRHYATTQLSKS-GVRLVRGIVKDVDSQKLILN-----DG---TEV 322 (499)
Q Consensus 281 -----------------~~~-~~-----------~~~~~~~~l~~~-gV~v~~~~v~~v~~~~v~~~-----~g---~~i 322 (499)
.++ +. +...+.+.+++. ||+++.+.+..++.+.+.+. +| +++
T Consensus 71 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~ 150 (490)
T 1fec_A 71 TIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETL 150 (490)
T ss_dssp HHHHGGGGTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEE
T ss_pred HHHHHHhcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEE
Confidence 000 01 112233456677 99999998788888888874 66 689
Q ss_pred eeeEEEEcCCCCcc
Q 010845 323 PYGLLVWSTGVGPS 336 (499)
Q Consensus 323 ~~D~vi~a~G~~p~ 336 (499)
.+|.+|+|||.+|.
T Consensus 151 ~~d~lviAtGs~p~ 164 (490)
T 1fec_A 151 DTEYILLATGSWPQ 164 (490)
T ss_dssp EEEEEEECCCEEEC
T ss_pred EcCEEEEeCCCCCC
Confidence 99999999998876
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=7e-05 Score=76.50 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=67.4
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC----------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF---------------------------- 282 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~---------------------------- 282 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++.+.+...
T Consensus 7 ~dvvIIGaG~aGl~aA~~l~~~g--------------~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~ 72 (470)
T 1dxl_A 7 NDVVIIGGGPGGYVAAIKAAQLG--------------FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFAN 72 (470)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999876 899999987322100
Q ss_pred ----------C-HH-----------HHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--CCC--cEEeeeEEEEcCCCCcc
Q 010845 283 ----------D-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 283 ----------~-~~-----------~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~--~~g--~~i~~D~vi~a~G~~p~ 336 (499)
+ +. +...+.+.+++.||+++.+....++.+.+.+ .+| +++.+|.+|+|+|.+|.
T Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~ 152 (470)
T 1dxl_A 73 HGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK 152 (470)
T ss_dssp HTEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred cCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence 0 00 1112344566789999999544577776655 356 68999999999999876
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.83 E-value=9.5e-06 Score=81.11 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=32.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.||+|||||++||++|..|++.|++|+|||+.+..
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 58999999999999999999999999999987654
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1e-05 Score=83.38 Aligned_cols=93 Identities=16% Similarity=0.329 Sum_probs=64.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc------CC-----CCCH-HHHHHHHHHH--Hh
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------LS-----SFDD-RLRHYATTQL--SK 296 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~------l~-----~~~~-~~~~~~~~~l--~~ 296 (499)
++|||||||+.|+.+|..|.... .+||||++.+. |+ .+++ ++...+.+.+ ++
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~--------------~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~ 108 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKK--------------YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKK 108 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTT--------------CEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCS
T ss_pred CCEEEECCcHHHHHHHHHhhhCC--------------CcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhc
Confidence 48999999999999998876433 89999998631 11 1111 1111122322 34
Q ss_pred CCCEEEeCceEEEeCC--eEEE--------------------CCCcEEeeeEEEEcCCCCcch
Q 010845 297 SGVRLVRGIVKDVDSQ--KLIL--------------------NDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 297 ~gV~v~~~~v~~v~~~--~v~~--------------------~~g~~i~~D~vi~a~G~~p~~ 337 (499)
.+++++.+++++|+.+ .|++ .++.++++|.+|+|+|..|+.
T Consensus 109 ~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~ 171 (502)
T 4g6h_A 109 GNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT 171 (502)
T ss_dssp SCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC
T ss_pred CCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc
Confidence 5799998888888754 4544 246789999999999999873
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.9e-05 Score=77.03 Aligned_cols=92 Identities=26% Similarity=0.321 Sum_probs=67.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc---------------------------CCCC-
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---------------------------LSSF- 282 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~---------------------------l~~~- 282 (499)
.+|+|||||+.|+.+|..|++.+ .+|++++++++ .|.+
T Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g--------------~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~ 70 (467)
T 1zk7_A 5 VQVAVIGSGGAAMAAALKAVEQG--------------AQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDG 70 (467)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcC
Confidence 38999999999999999998876 89999997631 1111
Q ss_pred ---------C-HHHHH-------H-----HHHHHHhC-CCEEEeCceEEEeCCeEE--ECCC--cEEeeeEEEEcCCCCc
Q 010845 283 ---------D-DRLRH-------Y-----ATTQLSKS-GVRLVRGIVKDVDSQKLI--LNDG--TEVPYGLLVWSTGVGP 335 (499)
Q Consensus 283 ---------~-~~~~~-------~-----~~~~l~~~-gV~v~~~~v~~v~~~~v~--~~~g--~~i~~D~vi~a~G~~p 335 (499)
+ ..+.. . ..+.+++. ||+++.+++..++.+.+. +.+| +++.+|.+|+|||.+|
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p 150 (467)
T 1zk7_A 71 GIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASP 150 (467)
T ss_dssp TSCCCCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEE
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCC
Confidence 1 11111 1 12445666 999998887778877554 4577 6899999999999887
Q ss_pred c
Q 010845 336 S 336 (499)
Q Consensus 336 ~ 336 (499)
.
T Consensus 151 ~ 151 (467)
T 1zk7_A 151 A 151 (467)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=81.51 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++.+...-. + + ..+...+.+. +. ..+++++.+ +|
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--~--------d-~~~~~~l~~~---l~-~~Gv~i~~~~~v 249 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK--F--------D-ECIQNTITDH---YV-KEGINVHKLSKI 249 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT--S--------C-HHHHHHHHHH---HH-HHTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc--c--------C-HHHHHHHHHH---HH-hCCeEEEeCCEE
Confidence 478999999999999999999999999999998763210 0 0 1111122222 22 246777654 78
Q ss_pred EEEECCCCE--EEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 141 AGIDTDNHV--VHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 141 ~~id~~~~~--v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+.++.+... +.+... ++ + .++++|.||+|+|..|+.
T Consensus 250 ~~i~~~~~~~~~~v~~~-~G------~-~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 250 VKVEKNVETDKLKIHMN-DS------K-SIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp EEEEECC-CCCEEEEET-TS------C-EEEEESEEEECSCEEECC
T ss_pred EEEEEcCCCcEEEEEEC-CC------c-EEEEcCEEEECCCCCCcc
Confidence 888754321 333221 11 1 379999999999998876
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3.5e-05 Score=79.33 Aligned_cols=92 Identities=15% Similarity=0.266 Sum_probs=68.3
Q ss_pred ccEEEeCcChHHHHHHHHHHH-HHHHHHHHhcCCCCCceEEEEEe---------CCCcC---------C-----------
Q 010845 231 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIE---------ANEIL---------S----------- 280 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~-~~~~~~~~~~~~~~~~~~Vtlv~---------~~~~l---------~----------- 280 (499)
.+|+|||||+.|+.+|..+++ .+ .+|++++ +..+- |
T Consensus 8 ~dvvVIGgG~aGl~aA~~la~~~G--------------~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~ 73 (495)
T 2wpf_A 8 FDLVVIGAGSGGLEAGWNAATLYG--------------KRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYM 73 (495)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHC--------------CCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHH
T ss_pred cCEEEECCChhHHHHHHHHHHhcC--------------CeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHH
Confidence 379999999999999999998 76 8999999 33220 0
Q ss_pred ------------------CCC-HHH-----------HHHHHHHHHhC-CCEEEeCceEEEeCCeEEEC---C-----CcE
Q 010845 281 ------------------SFD-DRL-----------RHYATTQLSKS-GVRLVRGIVKDVDSQKLILN---D-----GTE 321 (499)
Q Consensus 281 ------------------~~~-~~~-----------~~~~~~~l~~~-gV~v~~~~v~~v~~~~v~~~---~-----g~~ 321 (499)
.++ ..+ ...+.+.+++. ||+++.+.+..++...|.++ + +++
T Consensus 74 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~ 153 (495)
T 2wpf_A 74 DHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKER 153 (495)
T ss_dssp HHHHHHHTTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEE
T ss_pred HHHhHHHhcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeE
Confidence 000 011 11223345677 99999998777888888886 4 678
Q ss_pred EeeeEEEEcCCCCcc
Q 010845 322 VPYGLLVWSTGVGPS 336 (499)
Q Consensus 322 i~~D~vi~a~G~~p~ 336 (499)
+.+|.+|+|||.+|.
T Consensus 154 ~~~d~lViATGs~p~ 168 (495)
T 2wpf_A 154 LQADHILLATGSWPQ 168 (495)
T ss_dssp EEEEEEEECCCEEEC
T ss_pred EEcCEEEEeCCCCcC
Confidence 999999999999876
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=80.90 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=35.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~~ 99 (499)
.+++|+|||||++||+||..|++.| ++|+|+|+++....
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG 44 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSST
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCC
Confidence 4579999999999999999999999 89999999887643
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.5e-05 Score=72.60 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=99.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHH--HHHHHHHhcCCCCCceEEEEEeCCCcCC-C--------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEANEILS-S-------------------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~--~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-~-------------------------- 281 (499)
..|+|||||+.|+.+|..|++. + .+|+++++..... .
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G--------------~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv 145 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPD--------------LRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGV 145 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTT--------------SCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTC
T ss_pred CCEEEECccHHHHHHHHHHHhcCCC--------------CEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCC
Confidence 3799999999999999999886 5 7899998763111 0
Q ss_pred -C-----------CHHHHHHHHHHHHh-CCCEEEeC-ceEEEe--C-----------------C-----eEEEC------
Q 010845 282 -F-----------DDRLRHYATTQLSK-SGVRLVRG-IVKDVD--S-----------------Q-----KLILN------ 317 (499)
Q Consensus 282 -~-----------~~~~~~~~~~~l~~-~gV~v~~~-~v~~v~--~-----------------~-----~v~~~------ 317 (499)
+ ..++.+.+.+.+.+ .||+++.+ .+.++. + + +|.+.
T Consensus 146 ~~~~~G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~ 225 (344)
T 3jsk_A 146 PYEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSM 225 (344)
T ss_dssp CCEECSSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHT
T ss_pred cccccCCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeec
Confidence 0 12334555566666 59999988 676652 1 1 23321
Q ss_pred --------CCcEEeeeEEEEcCCCCcc--h-hc---ccCCCCCCCCCc----------eeeCCCCCCCCCCCeEEecccc
Q 010845 318 --------DGTEVPYGLLVWSTGVGPS--T-LV---KSLDLPKSPGGR----------IGIDEWLRVPSVQDVFAVGDCS 373 (499)
Q Consensus 318 --------~g~~i~~D~vi~a~G~~p~--~-~~---~~~~l~~~~~G~----------i~vd~~l~~~~~~~Ifa~GD~a 373 (499)
+..++.++.||.|||.... . +. ..+++...-.|. ..|+.+-++ +|++|++|=.+
T Consensus 226 ~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v--~~gl~~~gm~~ 303 (344)
T 3jsk_A 226 HHDDQSAMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREI--VPGLIVGGMEL 303 (344)
T ss_dssp TSSSSSCCBCEEEECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEE--ETTEEECGGGH
T ss_pred cCCcccccCceEEEcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceE--cCCEEEechhh
Confidence 2247999999999998765 1 22 233432111111 112222222 79999999876
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 374 GYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 374 ~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.-.. |.+...++...=...|+.+|+.|...++
T Consensus 304 ~~~~--g~~rmgp~fg~m~~sg~~~a~~~~~~~~ 335 (344)
T 3jsk_A 304 SEID--GANRMGPTFGAMALSGVKAAHEAIRVFD 335 (344)
T ss_dssp HHHH--TCEECCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhc--CCCCCCcccceeeecCHHHHHHHHHHHH
Confidence 5322 3333344444455679999998887775
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.5e-05 Score=75.93 Aligned_cols=90 Identities=18% Similarity=0.316 Sum_probs=67.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-----CC------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----SF------------------------ 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-----~~------------------------ 282 (499)
+|+|||||++|+-+|..|++.+ .+|+++++.+... .+
T Consensus 7 dVvIIGgG~aGl~~A~~La~~G--------------~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~ 72 (421)
T 3nix_A 7 DVLVIGAGPAGTVAASLVNKSG--------------FKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQ 72 (421)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEE
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcc
Confidence 7999999999999999998866 7788887642100 00
Q ss_pred --------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce----EEECCCc--E
Q 010845 283 --------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LILNDGT--E 321 (499)
Q Consensus 283 --------------------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~----v~~~~g~--~ 321 (499)
...+.+.+.+.+++.|++++.+ +|++++. ++ +.+.+|+ +
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~ 152 (421)
T 3nix_A 73 KFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKRE 152 (421)
T ss_dssp ECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred cCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEE
Confidence 1244556667777789999999 8888753 32 4446787 7
Q ss_pred EeeeEEEEcCCCCc
Q 010845 322 VPYGLLVWSTGVGP 335 (499)
Q Consensus 322 i~~D~vi~a~G~~p 335 (499)
+.+|.||.|+|..+
T Consensus 153 ~~a~~vV~A~G~~s 166 (421)
T 3nix_A 153 IEARFIIDASGYGR 166 (421)
T ss_dssp EEEEEEEECCGGGC
T ss_pred EEcCEEEECCCCch
Confidence 99999999999876
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=8.7e-05 Score=76.03 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=67.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC--------------CHHHHHHHHHHH-H
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF--------------DDRLRHYATTQL-S 295 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~--------------~~~~~~~~~~~l-~ 295 (499)
.+|+|||||+.|+.+|..|++.. .+.+|+++++....+.. ..++.....+.+ +
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~------------~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 104 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRND------------ENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRD 104 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC------------TTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhhC------------cCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHh
Confidence 48999999999999999998751 12899999987432211 111111223445 3
Q ss_pred hCCCEEEeC-ceEEEeC--CeEEEC---CCc--EEeeeEEEEcCCCCcc
Q 010845 296 KSGVRLVRG-IVKDVDS--QKLILN---DGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~--~~v~~~---~g~--~i~~D~vi~a~G~~p~ 336 (499)
..||+++.+ +|..++. +.+.+. +|+ ++.+|.+|+|+|.+|.
T Consensus 105 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~ 153 (480)
T 3cgb_A 105 KYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV 153 (480)
T ss_dssp TTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred hcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc
Confidence 459999998 8888874 466664 366 7999999999998875
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=76.14 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=68.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCC----------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSF---------------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~---------------------------- 282 (499)
.|+|||||+.|+++|..+++.+ .+|.++++.. .+...
T Consensus 29 DVIVIGgG~AGl~AAlalAr~G--------------~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~ 94 (637)
T 2zxi_A 29 DVVVIGGGHAGIEAALAAARMG--------------AKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKA 94 (637)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHH
Confidence 7999999999999999999877 8899998751 11100
Q ss_pred ---------------------------CHHHHHHHHHHHHh-CCCEEEeCceEEEe--CC---eEEECCCcEEeeeEEEE
Q 010845 283 ---------------------------DDRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 283 ---------------------------~~~~~~~~~~~l~~-~gV~v~~~~v~~v~--~~---~v~~~~g~~i~~D~vi~ 329 (499)
...+.+.+.+.+++ .||+++...|.++. ++ +|.+.+|+++.+|.||+
T Consensus 95 ~d~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVL 174 (637)
T 2zxi_A 95 IDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVV 174 (637)
T ss_dssp HHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEE
T ss_pred hhhcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEE
Confidence 01234555667777 59999766888874 33 47788899999999999
Q ss_pred cCCCCcc
Q 010845 330 STGVGPS 336 (499)
Q Consensus 330 a~G~~p~ 336 (499)
|+|..++
T Consensus 175 ATG~~s~ 181 (637)
T 2zxi_A 175 TTGTFLN 181 (637)
T ss_dssp CCTTCBT
T ss_pred ccCCCcc
Confidence 9998754
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00012 Score=72.75 Aligned_cols=91 Identities=14% Similarity=0.233 Sum_probs=69.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc---CC----------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LS---------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~---l~---------------------------- 280 (499)
+|+|||||++|+.+|..|++.+ .+|+++++... ..
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~ 69 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAG--------------IDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDG 69 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHC
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcC
Confidence 7999999999999999999876 77888876421 00
Q ss_pred ------------------------C-----CC-HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEE-CCCc--E
Q 010845 281 ------------------------S-----FD-DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLIL-NDGT--E 321 (499)
Q Consensus 281 ------------------------~-----~~-~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~-~~g~--~ 321 (499)
. ++ ..+.+.+.+.+.+.|++++.+ +|++++.+ .|++ .+|+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~ 149 (394)
T 1k0i_A 70 LVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149 (394)
T ss_dssp EEESCEEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEE
T ss_pred CccceEEEEECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEE
Confidence 0 01 234555666677789999999 89988642 4666 6787 7
Q ss_pred EeeeEEEEcCCCCcc
Q 010845 322 VPYGLLVWSTGVGPS 336 (499)
Q Consensus 322 i~~D~vi~a~G~~p~ 336 (499)
+.+|+||.|.|..+.
T Consensus 150 ~~a~~vV~AdG~~S~ 164 (394)
T 1k0i_A 150 LDCDYIAGCDGFHGI 164 (394)
T ss_dssp EECSEEEECCCTTCS
T ss_pred EEeCEEEECCCCCcH
Confidence 999999999999875
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=6.4e-05 Score=77.91 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=69.7
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC------------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------------------------------ 279 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l------------------------------ 279 (499)
.+|+|||||+.|+.+|..|++.+ .+|+++++.. +.
T Consensus 44 ~dVvIIGgG~aGl~aA~~l~~~G--------------~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~ 109 (523)
T 1mo9_A 44 YDAIFIGGGAAGRFGSAYLRAMG--------------GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQ 109 (523)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhc
Confidence 48999999999999999999876 8999999875 21
Q ss_pred ---CCC------CHHHHHHH----H---HHH-----HhCCCEEE-eCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 280 ---SSF------DDRLRHYA----T---TQL-----SKSGVRLV-RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 280 ---~~~------~~~~~~~~----~---~~l-----~~~gV~v~-~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+ ..++.+.+ . +.+ ++.||+++ .+++..++...+.+. ++++.+|.+|+|||.+|.
T Consensus 110 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~ 187 (523)
T 1mo9_A 110 YWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPG 187 (523)
T ss_dssp TTCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECC
T ss_pred CcHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCC
Confidence 110 11122222 2 455 77899999 558888888888886 778999999999998876
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.78 E-value=7.1e-05 Score=74.63 Aligned_cols=92 Identities=21% Similarity=0.228 Sum_probs=65.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCC------CCHHHHH---------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRH--------------- 288 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~------~~~~~~~--------------- 288 (499)
.+|+|||||++|+.+|..|++.+ .+|+++++.. .... +.+...+
T Consensus 6 ~~V~IVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~ 71 (397)
T 2vou_A 6 DRIAVVGGSISGLTAALMLRDAG--------------VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVP 71 (397)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBC
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCCccccccccChhHHHHHHHcCCcccccccc
Confidence 38999999999999999999877 8999998763 2111 1222111
Q ss_pred ----------------------------HHHHHHHh--CCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 289 ----------------------------YATTQLSK--SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 289 ----------------------------~~~~~l~~--~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.+.+.|.+ .|++++.+ +|.+++.+ .|++.+|+++.+|+||.|.|.
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 151 (397)
T 2vou_A 72 SSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGG 151 (397)
T ss_dssp CCEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCT
T ss_pred ccceEEEecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCc
Confidence 12222222 37888888 78888543 466788989999999999999
Q ss_pred Ccc
Q 010845 334 GPS 336 (499)
Q Consensus 334 ~p~ 336 (499)
.+.
T Consensus 152 ~S~ 154 (397)
T 2vou_A 152 ASV 154 (397)
T ss_dssp TCH
T ss_pred chh
Confidence 875
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=8.5e-05 Score=76.52 Aligned_cols=91 Identities=29% Similarity=0.444 Sum_probs=67.5
Q ss_pred cEEEeCcChHHHHHHHHHHHH---HHHHHHHhcCCCCCceEEEEEeCCCcC---------------------------C-
Q 010845 232 HCVVVGGGPTGVEFSGELSDF---IMRDVRQRYSHVKDYIHVTLIEANEIL---------------------------S- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~---~~~~~~~~~~~~~~~~~Vtlv~~~~~l---------------------------~- 280 (499)
+|+|||||+.|+.+|..|++. + .+|+++++..+- .
T Consensus 4 dVvIIGgG~aGl~aA~~l~~~~~~G--------------~~V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~ 69 (499)
T 1xdi_A 4 RIVILGGGPAGYEAALVAATSHPET--------------TQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPH 69 (499)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTT--------------EEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCc--------------CEEEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999987 5 899999987410 0
Q ss_pred -CC---------C-HH-----------HHHHHHHHHHhCCCEEEeCceEEEeC------CeE--EECCCc--EEeeeEEE
Q 010845 281 -SF---------D-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDS------QKL--ILNDGT--EVPYGLLV 328 (499)
Q Consensus 281 -~~---------~-~~-----------~~~~~~~~l~~~gV~v~~~~v~~v~~------~~v--~~~~g~--~i~~D~vi 328 (499)
.+ + .. +...+.+.+++.||+++.+.+..++. +.+ .+++|+ ++.+|.+|
T Consensus 70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lv 149 (499)
T 1xdi_A 70 LGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVL 149 (499)
T ss_dssp TTBC------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEE
T ss_pred CCCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEE
Confidence 00 1 01 22234566778899999987766766 443 345676 79999999
Q ss_pred EcCCCCcc
Q 010845 329 WSTGVGPS 336 (499)
Q Consensus 329 ~a~G~~p~ 336 (499)
+|||.+|.
T Consensus 150 iATGs~p~ 157 (499)
T 1xdi_A 150 VATGASPR 157 (499)
T ss_dssp ECCCEEEC
T ss_pred EcCCCCCC
Confidence 99998876
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.4e-05 Score=80.44 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
...+.+.+.+.+++.|++++++ +|++++. ++++..+|+++.+|.||+|+|....
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~~~ 244 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRET 244 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHHHH
Confidence 3678888899999999999999 8999975 3555567889999999999997643
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=9.2e-06 Score=83.97 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCC
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.+.+.+.+.+++.|++++++ +|++|.. ..+++.||+++.||.||.++..
T Consensus 223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHTSCGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCCH
Confidence 56667777788889999999 8999975 4788999999999999998764
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=76.40 Aligned_cols=91 Identities=19% Similarity=0.291 Sum_probs=68.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCC----------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSF---------------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~---------------------------- 282 (499)
.|+|||||..|+++|..+++.+ .+|+++++.. .+...
T Consensus 23 DVIVIGgG~AGl~AAlaLAr~G--------------~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~ 88 (641)
T 3cp8_A 23 DVIVVGAGHAGCEAALAVARGG--------------LHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKA 88 (641)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHH
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHH
Confidence 7999999999999999999887 8899998752 11100
Q ss_pred --------------------------C-HHHHHHHHHHHHhC-CCEEEeCceEEEe--CC---eEEECCCcEEeeeEEEE
Q 010845 283 --------------------------D-DRLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 283 --------------------------~-~~~~~~~~~~l~~~-gV~v~~~~v~~v~--~~---~v~~~~g~~i~~D~vi~ 329 (499)
+ ..+...+.+.+++. ||+++.+.|.++. ++ +|.+.+|+++.+|.||+
T Consensus 89 ~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVL 168 (641)
T 3cp8_A 89 IDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAIL 168 (641)
T ss_dssp HHHHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEE
T ss_pred HHhcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEE
Confidence 0 13455566677774 9999877787764 44 36778889999999999
Q ss_pred cCCCCcc
Q 010845 330 STGVGPS 336 (499)
Q Consensus 330 a~G~~p~ 336 (499)
|+|..++
T Consensus 169 ATG~~s~ 175 (641)
T 3cp8_A 169 ACGTFLN 175 (641)
T ss_dssp CCTTCBT
T ss_pred CcCCCCC
Confidence 9998754
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=80.28 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEECCCcEEeeeEEEEcCCCCcc
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+.+.+.+.+++.|++++++ +|++|.. +. |.+ +|+++.+|.||+|+|....
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~ 253 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAAT 253 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHH
Confidence 568888889999999999999 8998853 33 444 5788999999999987654
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.8e-05 Score=81.04 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce-EEE-CCCcEEeeeEEEEcCCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK-LIL-NDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~-v~~-~~g~~i~~D~vi~a~G~~ 334 (499)
..+.+.+.+.+++.|++++++ +|++|+. ++ +.+ .++.++.+|.||+|++..
T Consensus 234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPAS 289 (477)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSCEEEESEEEECSCHH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCeEEEcCEEEECCCHH
Confidence 367788888899999999999 8988864 23 332 356689999999999753
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1.3e-05 Score=79.31 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
+..+...+.+.+++.|++++.+ +|++++. + .|.+.+| ++.+|.||+|+|.....+...++
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g 217 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAG 217 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhC
Confidence 3577788888899999999988 8888753 3 3555555 89999999999988765554444
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=71.24 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhccc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKS 341 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 341 (499)
.+.+.+.+.+++.|++++.+ +|++++. + .|.+.+| ++.+|.||+|+|.....++..
T Consensus 150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~ 210 (372)
T 2uzz_A 150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVKDLLPE 210 (372)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGGGTSTT
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHHhhccc
Confidence 34455566677889999998 8988864 2 3555566 599999999999877655543
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.3e-05 Score=77.16 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC-CCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR-NHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~-~~~~~ 99 (499)
..++|+|||||++||++|..|++.|++|+|+|++ +....
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGG 82 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG 82 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBT
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCC
Confidence 4579999999999999999999999999999998 66543
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.9e-05 Score=80.36 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEe----CC---eEEECCCcEEeeeEEEEcCCCCcch
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVD----SQ---KLILNDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~----~~---~v~~~~g~~i~~D~vi~a~G~~p~~ 337 (499)
..+.+.+.+.+++.|++++++ +|+++. ++ +|.+ +|+++.||.||+++|..+..
T Consensus 242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~~ 302 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPEK 302 (453)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccchh
Confidence 467888888899999999998 788774 33 3444 68889999999999988753
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.5e-05 Score=80.52 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 689999999999999999999999999999976
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.70 E-value=5.6e-05 Score=77.43 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=67.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- .. ...+...+.+. +. ..+++++. .++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~---------d~~~~~~~~~~---l~-~~gv~i~~~~~v 251 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR--SF---------DSMISTNCTEE---LE-NAGVEVLKFSQV 251 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT--TS---------CHHHHHHHHHH---HH-HTTCEEETTEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc--cc---------CHHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 47899999999999999999999999999999775321 00 01111222222 22 25777765 478
Q ss_pred EEEECCC-C-EEEEeeecCccccCCCc--eeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDN-H-VVHCETVTDELRTLEPW--KFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~-~-~v~~~~~~~~~~~~~~~--~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++... . .+.+...+.+ .++ +.++++|.||+|+|..|+..
T Consensus 252 ~~i~~~~~~~~~~v~~~~~~----~g~~~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 252 KEVKKTLSGLEVSMVTAVPG----RLPVMTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp EEEEECSSSEEEEEEECCTT----SCCEEEEEEEESEEEECSCEEESCT
T ss_pred EEEEEcCCCcEEEEEEccCC----CCcccceEEEcCEEEEeeccccCCC
Confidence 8887543 2 2333321111 011 15789999999999988764
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.4e-05 Score=82.86 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=35.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~~~ 100 (499)
.++|+|||||+|||+||..|++.| ++|+|+|+++..+..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr 47 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR 47 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTT
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCc
Confidence 468999999999999999999999 999999999876543
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00023 Score=74.61 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=70.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC------------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------ 280 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------ 280 (499)
.+|+|||||++|+-+|..|++.+ .+|+++++.....
T Consensus 24 ~DVvIVGgG~AGl~aA~~Lar~G--------------~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~ 89 (591)
T 3i3l_A 24 SKVAIIGGGPAGSVAGLTLHKLG--------------HDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYV 89 (591)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCE
T ss_pred CCEEEECcCHHHHHHHHHHHcCC--------------CCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCc
Confidence 38999999999999999999876 6777777642100
Q ss_pred ----------------------------------CC-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEEC-C
Q 010845 281 ----------------------------------SF-DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILN-D 318 (499)
Q Consensus 281 ----------------------------------~~-~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~-~ 318 (499)
.+ ...+...+.+.+++.||+++.+ +|++++.+ .|.+. +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~ 169 (591)
T 3i3l_A 90 KKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRG 169 (591)
T ss_dssp EECEEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEET
T ss_pred ccCCcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecC
Confidence 00 1245566777788899999999 89998742 46666 6
Q ss_pred C--cEEeeeEEEEcCCCCcc
Q 010845 319 G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 319 g--~~i~~D~vi~a~G~~p~ 336 (499)
| .++.+|.||.|+|..+.
T Consensus 170 G~~~~i~AdlVV~AdG~~S~ 189 (591)
T 3i3l_A 170 GESVTVESDFVIDAGGSGGP 189 (591)
T ss_dssp TEEEEEEESEEEECCGGGCH
T ss_pred CceEEEEcCEEEECCCCcch
Confidence 6 57999999999998763
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2e-05 Score=88.13 Aligned_cols=91 Identities=18% Similarity=0.342 Sum_probs=69.8
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce-EEEEEeCCCcC--------CC--CCHHHHHHHHHHHHhC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (499)
..++|+|||||+.|+.+|..|++.+ . +|+++++.+.+ |. ++.++.++..+.+++.
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G--------------~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~ 251 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLG--------------YSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDL 251 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--------------CCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHC
Confidence 4568999999999999999999876 6 69999986322 22 3456666777888999
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCC-Ccc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 336 (499)
||+++.+ .+. ...+.+++++++.+|.||+|||. .|.
T Consensus 252 gv~~~~~~~v~---~~~v~~~~~~~~~~d~vvlAtGa~~p~ 289 (1025)
T 1gte_A 252 GVKIICGKSLS---ENEITLNTLKEEGYKAAFIGIGLPEPK 289 (1025)
T ss_dssp TCEEEESCCBS---TTSBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred CcEEEcccEec---cceEEhhhcCccCCCEEEEecCCCCCC
Confidence 9999998 442 13455555566789999999998 465
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.1e-05 Score=79.52 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC----ceEEEe--CC---eEEECCCcEEeeeEEEEcCCCCcchhcc
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG----IVKDVD--SQ---KLILNDGTEVPYGLLVWSTGVGPSTLVK 340 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~----~v~~v~--~~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 340 (499)
+..+...+.+.+++.|++++.+ +|+++. ++ +|++.+|+++.+|.||+|+|.....++.
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~~ 226 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFLD 226 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGTSC
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhhcC
Confidence 3567788888899999999987 588875 33 3777888899999999999988765543
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=97.68 E-value=2.1e-05 Score=81.62 Aligned_cols=39 Identities=31% Similarity=0.338 Sum_probs=35.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
+++|+|||||+|||+||..|++.|++|+|+|+++.....
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr 42 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR 42 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence 468999999999999999999999999999999876443
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.6e-05 Score=78.72 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+++|+|||||++|+++|+.|++.|++|+|||+..
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 34799999999999999999999999999999975
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=5.8e-05 Score=77.42 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=66.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++...+. . . ..++...+.+. +. ..++.++. .++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~---~--------~-d~~~~~~l~~~---l~-~~Gv~i~~~~~v 250 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR---G--------F-DQQMAELVAAS---ME-ERGIPFLRKTVP 250 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST---T--------S-CHHHHHHHHHH---HH-HTTCCEEETEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc---c--------c-CHHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 4689999999999999999999999999998853211 0 0 01111222222 22 25677665 478
Q ss_pred EEEECCC-C--EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTDN-H--VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~-~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++... . .+++.+... ++..++++|.||+|+|..|+..
T Consensus 251 ~~i~~~~~~~~~v~~~~~~~------~~~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 251 LSVEKQDDGKLLVKYKNVET------GEESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp EEEEECTTSCEEEEEEETTT------CCEEEEEESEEEECSCEEECCG
T ss_pred EEEEEcCCCcEEEEEecCCC------CceeEEEcCEEEECcccccCcC
Confidence 8887533 2 344444211 1235799999999999988753
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.3e-05 Score=78.35 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=35.2
Q ss_pred CCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~~~~~ 100 (499)
+++|+|||||++||++|..|++. |++|+|+|++++....
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~ 46 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN 46 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGG
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCe
Confidence 57999999999999999999998 9999999999876544
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=7.8e-05 Score=76.57 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=65.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++...+. .+ ..++...+.+. +. ..++.++. ..+
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~---~~---------d~~~~~~l~~~---l~-~~gv~~~~~~~v 248 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR---GF---------DQQMSSLVTEH---ME-SHGTQFLKGCVP 248 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST---TS---------CHHHHHHHHHH---HH-HTTCEEEETEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc---cC---------CHHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 4689999999999999999999999999999864211 00 01111222222 22 25777765 477
Q ss_pred EEEEC-CCC--EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDT-DNH--VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~-~~~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..+.. +.. .+.+.+..++ +..++++|.||+|+|..|+..
T Consensus 249 ~~i~~~~~~~~~v~~~~~~~g------~~~~~~~D~vi~a~G~~p~~~ 290 (488)
T 3dgz_A 249 SHIKKLPTNQLQVTWEDHASG------KEDTGTFDTVLWAIGRVPETR 290 (488)
T ss_dssp EEEEECTTSCEEEEEEETTTT------EEEEEEESEEEECSCEEESCG
T ss_pred EEEEEcCCCcEEEEEEeCCCC------eeEEEECCEEEEcccCCcccC
Confidence 77764 223 3444332112 123589999999999988754
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.1e-05 Score=79.27 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=34.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..++|+|||||++||++|..|++.|++|+|+|+++....
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GG 53 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 53 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc
Confidence 357999999999999999999999999999999987543
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.4e-05 Score=79.27 Aligned_cols=39 Identities=28% Similarity=0.246 Sum_probs=35.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..++|+|||||++||+||+.|++.|++|+|+|+++....
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 48 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG 48 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 357999999999999999999999999999999987544
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.5e-05 Score=78.45 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=66.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC--------CCC--CHHHHHHHHHHHHhCCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--------SSF--DDRLRHYATTQLSKSGV 299 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l--------~~~--~~~~~~~~~~~l~~~gV 299 (499)
++|+|||+|+.|+.+|..|.+.+ ++.+|+++++.+ +. |.+ ..++...+.+.+++.||
T Consensus 7 ~~vvIIG~G~aGl~aA~~l~~~g------------~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv 74 (460)
T 1cjc_A 7 PQICVVGSGPAGFYTAQHLLKHH------------SRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRC 74 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC------------SSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTE
T ss_pred ceEEEECcCHHHHHHHHHHHhcC------------CCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCc
Confidence 58999999999999999998754 237999999863 32 322 23566777788889999
Q ss_pred EEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 300 RLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 300 ~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+++.+ .+ ...|.+++ .++.+|.||+|||..|
T Consensus 75 ~~~~~~~v----~~~V~~~~-~~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 75 AFYGNVEV----GRDVTVQE-LQDAYHAVVLSYGAED 106 (460)
T ss_dssp EEEBSCCB----TTTBCHHH-HHHHSSEEEECCCCCE
T ss_pred EEEeeeEE----eeEEEecc-ceEEcCEEEEecCcCC
Confidence 99988 55 23344444 3468999999999986
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.3e-05 Score=79.51 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCC-CEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCC
Q 010845 284 DRLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 ~~~~~~~~~~l~~~g-V~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
..+.+.+.+.+++.| ++++.+ +|++|+. + .|++.+|+++.+|.||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence 467778888888888 999999 8999863 3 3556788889999999999964
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.5e-05 Score=81.29 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=33.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCC------CeEEEEcCCCCcc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRNHMV 98 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g------~~V~lie~~~~~~ 98 (499)
+++|+|||||++||+||++|++.| ++|+|+|+++...
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~G 47 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG 47 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCC
Confidence 479999999999999999999998 9999999987654
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00019 Score=71.75 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=65.9
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------C---------------------
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------F--------------------- 282 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------~--------------------- 282 (499)
..+|+|||||++|+-+|..|++.+ .+|+++++...... +
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G--------------~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~ 88 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSG--------------IDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFG 88 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhc
Confidence 348999999999999999999876 77888876521100 0
Q ss_pred -------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCc
Q 010845 283 -------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGT 320 (499)
Q Consensus 283 -------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~ 320 (499)
...+.+.+.+.+.+ ++++.+ +|++++. + .|++.+|+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~ 166 (407)
T 3rp8_A 89 GPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGS 166 (407)
T ss_dssp CCCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSC
T ss_pred CCCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCC
Confidence 01233444444444 788888 7888754 3 46678899
Q ss_pred EEeeeEEEEcCCCCcc
Q 010845 321 EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 321 ~i~~D~vi~a~G~~p~ 336 (499)
++.+|+||.|.|....
T Consensus 167 ~~~a~~vV~AdG~~S~ 182 (407)
T 3rp8_A 167 SASGDLLIAADGSHSA 182 (407)
T ss_dssp EEEESEEEECCCTTCS
T ss_pred EEeeCEEEECCCcChH
Confidence 9999999999999875
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.7e-05 Score=79.20 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=66.5
Q ss_pred ccEEEeCcChHHHHHHHHHHH-HHHHHHHHhcCCCCCceEEEEEeCC-CcC--------CC--CCHHHHHHHHHHHHhCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------SS--FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~-~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l--------~~--~~~~~~~~~~~~l~~~g 298 (499)
++|+|||||+.|+.+|..|.+ ... ....+.+|+++++. .+. |. ...++...+.+.+++.|
T Consensus 4 ~~VvIIG~G~aGl~aA~~L~~~~~~--------~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~ 75 (456)
T 1lqt_A 4 YYIAIVGSGPSAFFAAASLLKAADT--------TEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPR 75 (456)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH--------STTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhhCcc--------ccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCC
Confidence 489999999999999999987 520 00002899999986 332 21 12356777778888899
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
|+++.+ .+ +..|.++++ ++.+|.||+|||..+
T Consensus 76 v~~~~~v~v----~~~v~~~~~-~~~~d~lViAtG~~~ 108 (456)
T 1lqt_A 76 FRFFGNVVV----GEHVQPGEL-SERYDAVIYAVGAQS 108 (456)
T ss_dssp EEEEESCCB----TTTBCHHHH-HHHSSEEEECCCCCE
T ss_pred CEEEeeEEE----CCEEEECCC-eEeCCEEEEeeCCCC
Confidence 999988 43 334555555 478999999999973
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=74.95 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEe--C-C---eEEEC--CCc--EEeeeEEEEcCCCCc
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVD--S-Q---KLILN--DGT--EVPYGLLVWSTGVGP 335 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~--~-~---~v~~~--~g~--~i~~D~vi~a~G~~p 335 (499)
+.+.+.+.+++.||+++.+ +|.++. + + +|++. +|+ ++.+|.||+|+|...
T Consensus 257 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 257 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred HHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 4455666677889999999 888875 2 2 25554 565 689999999999865
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3e-05 Score=77.79 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~ 97 (499)
..+|+|||||++|+++|..|++.|++ |+|||+.+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 40 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 40 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence 47999999999999999999999999 9999998653
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.6e-05 Score=75.70 Aligned_cols=34 Identities=32% Similarity=0.321 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.+|+|||||++|+++|++|++.|++|+|||++.
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 4799999999999999999999999999999875
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=2.4e-05 Score=77.99 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE--EECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v--~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
..+...+.+.+++.|++++.+ +|.+++. +++ .+.+ .++.+|.||+|+|.....+...++
T Consensus 153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~-g~i~a~~VV~A~G~~s~~l~~~~g 216 (397)
T 2oln_A 153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDR-GTYRAGKVVLACGPYTNDLLEPLG 216 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESS-CEEEEEEEEECCGGGHHHHHGGGT
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECC-CEEEcCEEEEcCCcChHHHhhhcC
Confidence 456677788888899999998 8888753 344 3344 479999999999988665555444
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00027 Score=73.56 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=67.8
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c--------CC-------------CCC-----
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I--------LS-------------SFD----- 283 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~--------l~-------------~~~----- 283 (499)
.+|+|||||++|+.+|..|++.+ .+|+++++.. + .| .+.
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G--------------~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~ 82 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELG--------------RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQ 82 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhh
Confidence 38999999999999999999876 7899998752 2 11 011
Q ss_pred -----------HHHHHHHHHHHHhCC--CEEEeC-ceEEEeC--C----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 284 -----------DRLRHYATTQLSKSG--VRLVRG-IVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 -----------~~~~~~~~~~l~~~g--V~v~~~-~v~~v~~--~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.+++....++.+ ++++.+ +|.+++. + .|++++|+++.+|.||+|+|....
T Consensus 83 ~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~ 155 (542)
T 1w4x_A 83 EWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSV 155 (542)
T ss_dssp HCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred ccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCC
Confidence 235556666666665 567777 7887742 2 477788889999999999997543
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00014 Score=75.15 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=62.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++...+ . .+ ..++...+.+. +. ..++.++.+ ++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l--~-~~---------d~~~~~~~~~~---l~-~~GV~v~~~~~v 273 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--R-GF---------DQDMANKIGEH---ME-EHGIKFIRQFVP 273 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS--T-TS---------CHHHHHHHHHH---HH-HTTCEEEESEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccccc--c-cC---------CHHHHHHHHHH---HH-HCCCEEEeCCeE
Confidence 457999999999999999999999999999984211 0 00 01112222222 22 257777653 44
Q ss_pred EEEECC----CCEEEEeee-cCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010845 141 AGIDTD----NHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~----~~~v~~~~~-~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.+... ...+.+... .++ ++..++++|.||+|+|..|+..
T Consensus 274 ~~v~~~~~~~~~~~~v~~~~~~g-----~~~~~~~~D~vi~a~G~~p~~~ 318 (519)
T 3qfa_A 274 IKVEQIEAGTPGRLRVVAQSTNS-----EEIIEGEYNTVMLAIGRDACTR 318 (519)
T ss_dssp EEEEEEECCTTCEEEEEEEESSS-----SCEEEEEESEEEECSCEEESCS
T ss_pred EEEEEccCCCCceEEEEEEECCC-----cEEEEEECCEEEEecCCcccCC
Confidence 444321 133333221 111 1124678999999999988764
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=5.6e-05 Score=75.07 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=34.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
+++|+|||||++|+++|..|++.|++|+|+|++++...
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG 40 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCC
Confidence 36899999999999999999999999999999887643
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00023 Score=74.41 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=69.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------------------------------- 279 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l-------------------------------- 279 (499)
.|+|||||++|+-+|..|++.+ .+|+++++....
T Consensus 51 DVvIVGaG~aGL~~A~~La~~G--------------~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~ 116 (570)
T 3fmw_A 51 DVVVVGGGPVGLMLAGELRAGG--------------VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQV 116 (570)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCB
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcc
Confidence 7999999999999999999877 788888863110
Q ss_pred ------C-----C---------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEE--CCC-cEEee
Q 010845 280 ------S-----S---------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLIL--NDG-TEVPY 324 (499)
Q Consensus 280 ------~-----~---------------~-~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~--~~g-~~i~~ 324 (499)
. . + ...+.+.+.+.+++.|++++.+ +|++++.+ .|++ .+| +++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a 196 (570)
T 3fmw_A 117 AKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRA 196 (570)
T ss_dssp CSBCCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEE
T ss_pred cCCceeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEe
Confidence 0 0 0 1245666777777789999998 89888653 3455 577 68999
Q ss_pred eEEEEcCCCCc
Q 010845 325 GLLVWSTGVGP 335 (499)
Q Consensus 325 D~vi~a~G~~p 335 (499)
|+||.|.|...
T Consensus 197 ~~vV~ADG~~S 207 (570)
T 3fmw_A 197 RYGVGCDGGRS 207 (570)
T ss_dssp SEEEECSCSSC
T ss_pred CEEEEcCCCCc
Confidence 99999999887
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=4.6e-05 Score=75.65 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
...+|+|||||++|+++|..|++.|++|+|+|++++...
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 66 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCC
Confidence 457999999999999999999999999999999887543
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00034 Score=73.19 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEe--C-C---eEEEC--CCc--EEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVD--S-Q---KLILN--DGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~--~-~---~v~~~--~g~--~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+++.||+++.+ +|.++. + + +|++. +|+ ++.+|.||+|+|....
T Consensus 252 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 252 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp HHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 3455566677889999999 888874 2 3 35554 665 6899999999997664
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.53 E-value=4.3e-05 Score=78.12 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~ 99 (499)
+++|+|||||++||++|++|++.| ++|+|+|+++....
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG 43 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBT
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCc
Confidence 579999999999999999999998 99999999876543
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.7e-05 Score=76.26 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~ 97 (499)
++|+|||||++|+++|..|++. |++|+|||+++..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 4799999999999999999998 9999999998754
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.53 E-value=6.1e-05 Score=77.67 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
+++|+|||||++||++|..|++.|++|+|+|+++....
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG 50 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 50 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 57999999999999999999999999999999987643
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=2.9e-05 Score=78.87 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
+++|+|||||++||+||..|++.|++|+|+|+++.....
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~ 43 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGR 43 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCc
Confidence 468999999999999999999999999999998765433
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00021 Score=71.40 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceE---------EEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcc-cCCC
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVK---------DVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVK-SLDL 344 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~---------~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~-~~~l 344 (499)
+...+.+.+++.|++++.+ +|. ++.. + .|.+.+| ++.+|.||+|+|.....+.. .+++
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~ 246 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGL 246 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCC
Confidence 4555667778889999988 788 7643 2 2444455 79999999999998765555 4443
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.2e-05 Score=76.25 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=31.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+|||||++|+++|++|++.|++|+|||++..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~ 36 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP 36 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6899999999999999999999999999998753
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=4.2e-05 Score=79.76 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~ 61 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT 61 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 468999999999999999999999999999998653
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.49 E-value=5.6e-05 Score=74.58 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.6
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
++|+|||||++|+++|..|++.|++|+|+|++++...
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG 38 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence 5899999999999999999999999999999876543
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00024 Score=69.12 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=30.0
Q ss_pred hCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
+.|++++.+ +|.+++.+ .|.+.+|+++.+|.||+|++.
T Consensus 121 ~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~ 163 (342)
T 3qj4_A 121 ESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV 163 (342)
T ss_dssp HHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred hcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence 348999999 89988643 356677877899999999873
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00076 Score=70.04 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCEEEeCceEEEeC--C----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 288 HYATTQLSKSGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 288 ~~~~~~l~~~gV~v~~~~v~~v~~--~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+++.||+++.++|++++. + .|.+++|+++.+|.||.|+|....
T Consensus 169 ~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp HHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred HHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 445556667899999888888753 2 467788888999999999998775
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00044 Score=71.40 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEE--CCCc--EEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLIL--NDGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~--~~g~--~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.||+++.+ +|+++.. + +|.+ .+|+ ++.+|+||.|+|....
T Consensus 112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~ 173 (512)
T 3e1t_A 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR 173 (512)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH
Confidence 45556677777899999998 7887754 3 2444 3564 7999999999999874
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.5e-05 Score=73.30 Aligned_cols=34 Identities=26% Similarity=0.175 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|+|||||+||+.+|..|++.|++|+|||+++
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 3689999999999999999999999999999876
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00074 Score=67.10 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|..|++.+ .+|+++++..
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~G--------------~~V~vlE~~~ 37 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAERG--------------HRVLVLERHT 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCC
Confidence 7999999999999999999887 8999999864
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00017 Score=73.21 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=67.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC-C----C-------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-S----S------------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l-~----~------------------------- 281 (499)
+|+|||||++|+.+|..|++.+ .+|+++++.+.. . .
T Consensus 8 dVvIVGaG~aGl~aA~~La~~G--------------~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~ 73 (453)
T 3atr_A 8 DVLIIGGGFAGSSAAYQLSRRG--------------LKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENK 73 (453)
T ss_dssp SEEEECCSHHHHHHHHHHSSSS--------------CCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhh
Confidence 7999999999999999998765 677777764210 0 0
Q ss_pred -----------------------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEEC---CCc--EEeeeE
Q 010845 282 -----------------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILN---DGT--EVPYGL 326 (499)
Q Consensus 282 -----------------------~-~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~---v~~~---~g~--~i~~D~ 326 (499)
+ ...+.+.+.+.+.+.|++++.+ +|++++. +. |++. +|+ ++.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~ 153 (453)
T 3atr_A 74 INGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKV 153 (453)
T ss_dssp EEEEEEECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSE
T ss_pred hcceEEECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCE
Confidence 0 1245666777777889999999 8888753 33 4554 665 799999
Q ss_pred EEEcCCCCcc
Q 010845 327 LVWSTGVGPS 336 (499)
Q Consensus 327 vi~a~G~~p~ 336 (499)
||.|+|..+.
T Consensus 154 VV~AdG~~s~ 163 (453)
T 3atr_A 154 VVEATGYSRS 163 (453)
T ss_dssp EEECCGGGCT
T ss_pred EEECcCCchh
Confidence 9999998764
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00031 Score=69.93 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=63.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC-----C--C-CHH---H------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-----S--F-DDR---L------------ 286 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~-----~--~-~~~---~------------ 286 (499)
.+|+|||||++|+.+|..|++.+ .+|+++++.. ... . + +.. +
T Consensus 27 ~dV~IVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~ 92 (398)
T 2xdo_A 27 KNVAIIGGGPVGLTMAKLLQQNG--------------IDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYD 92 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHH
Confidence 38999999999999999999876 8999999752 211 0 0 000 0
Q ss_pred ----------------------------------HHHHHHHHHhC--CCEEEeC-ceEEEeCC----eEEECCCcEEeee
Q 010845 287 ----------------------------------RHYATTQLSKS--GVRLVRG-IVKDVDSQ----KLILNDGTEVPYG 325 (499)
Q Consensus 287 ----------------------------------~~~~~~~l~~~--gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D 325 (499)
...+.+.|.+. +++++.+ +|++++.+ .|++.+|+++.+|
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 172 (398)
T 2xdo_A 93 LALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETAD 172 (398)
T ss_dssp HCBCCCEEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEES
T ss_pred hhcccceEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecC
Confidence 00112222221 3567777 78888643 4667888899999
Q ss_pred EEEEcCCCCcc
Q 010845 326 LLVWSTGVGPS 336 (499)
Q Consensus 326 ~vi~a~G~~p~ 336 (499)
+||.|.|..+.
T Consensus 173 ~vV~AdG~~S~ 183 (398)
T 2xdo_A 173 LVILANGGMSK 183 (398)
T ss_dssp EEEECSCTTCS
T ss_pred EEEECCCcchh
Confidence 99999998775
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.001 Score=68.30 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=67.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC------------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------------------------------ 279 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l------------------------------ 279 (499)
.+|+|||||++|+-+|..|++.+ .+|+++++.. ..
T Consensus 13 ~dVlIVGaGpaGl~~A~~La~~G--------------~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 78 (499)
T 2qa2_A 13 ASVIVVGAGPAGLMLAGELRLGG--------------VDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVET 78 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccc
Confidence 48999999999999999999866 5566665431 10
Q ss_pred ----------------C-CC-------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCc---EEeeeEE
Q 010845 280 ----------------S-SF-------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGT---EVPYGLL 327 (499)
Q Consensus 280 ----------------~-~~-------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~---~i~~D~v 327 (499)
+ .. ...+.+.+.+.+++.|++++.+ +|.+++. + .+++.+++ ++.+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~v 158 (499)
T 2qa2_A 79 STQGHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYV 158 (499)
T ss_dssp ESEEEETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEE
T ss_pred cccceecceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEE
Confidence 0 00 1345666677778889999998 8888854 3 35566664 7999999
Q ss_pred EEcCCCCcc
Q 010845 328 VWSTGVGPS 336 (499)
Q Consensus 328 i~a~G~~p~ 336 (499)
|.|.|....
T Consensus 159 VgADG~~S~ 167 (499)
T 2qa2_A 159 VGCDGGRST 167 (499)
T ss_dssp EECCCTTCH
T ss_pred EEccCcccH
Confidence 999999864
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=8.1e-05 Score=76.61 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
.+++|+|||||++||++|..|++.|++|+|+|+++....
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg 70 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence 357999999999999999999999999999999887554
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=7.5e-05 Score=77.72 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhccC---CCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~ 95 (499)
+++|||||||++|+++|..|++ .|++|+|||+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 5799999999999999999999 999999999864
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=4.8e-05 Score=74.48 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhccCCC------CeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g------~~V~lie~~~ 95 (499)
++|+|||||++|+++|++|++.| .+|+|||++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 48999999999999999999987 8999999975
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0004 Score=69.10 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=28.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||++|+-+|..|++.+ .+|+++|+.
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G--------------~~v~v~Er~ 33 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHG--------------IKVTIYERN 33 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHhCC--------------CCEEEEecC
Confidence 8999999999999999999987 889999875
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0001 Score=76.95 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCceEEEeC--C----eEEECCCcEEeeeEEEEcCCCCcch
Q 010845 284 DRLRHYATTQLSKS-GVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 284 ~~~~~~~~~~l~~~-gV~v~~~~v~~v~~--~----~v~~~~g~~i~~D~vi~a~G~~p~~ 337 (499)
..+.+.+.+.+++. ||+++.++|++++. + .|.+++|+++.+|.||.|+|..+..
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 46778888888888 99999888888852 2 4667888889999999999987753
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=8.8e-05 Score=76.04 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~~ 99 (499)
.+++|+|||||++||++|..|++.| .+|+|+|+++....
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG 47 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSG
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Confidence 3579999999999999999999998 79999999987643
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.39 E-value=7e-05 Score=77.71 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHh-CCCEEEeCceEEEeC--C----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 284 DRLRHYATTQLSK-SGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~-~gV~v~~~~v~~v~~--~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+.+.+.+.+++ .||+++.++|++++. + .|.+++|+++.+|.||.|+|....
T Consensus 175 ~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 175 AKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 4567777888888 899999888888753 2 466778778999999999999765
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=7.5e-05 Score=76.96 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEEC---CCc--EEeeeEEEEcCCCCcchhcc
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILN---DGT--EVPYGLLVWSTGVGPSTLVK 340 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~---~g~--~i~~D~vi~a~G~~p~~~~~ 340 (499)
+..+...+.+.+++.|++++.+ +|+++.. + +|.+. +|+ ++.+|.||.|+|.....+..
T Consensus 148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~ 215 (501)
T 2qcu_A 148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFD 215 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHH
Confidence 4567777888888999999998 8888753 2 46663 565 79999999999998775544
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.38 E-value=5.2e-05 Score=80.92 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=35.2
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
...++|+|||||++||++|..|++.|++|+|+|+++...
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g 143 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG 143 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 345799999999999999999999999999999987654
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=7.4e-05 Score=77.20 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=33.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+|||||||+|||++|..|++.|++|+|||+.+..
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~ 76 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999998754
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00019 Score=76.29 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=33.0
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~~~~~ 97 (499)
+.+|+|||||++||++|..|++ .|++|+|||+.+..
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~ 68 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP 68 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 4689999999999999999999 99999999988643
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.001 Score=69.70 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C----eEEEC------CC---------cEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q----KLILN------DG---------TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~----~v~~~------~g---------~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.||+++.+ ++.++.. + +|.+. +| .++.+|.||.|.|..+.
T Consensus 145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence 45666777788889999999 8888752 2 25554 33 68999999999999875
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00066 Score=70.44 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----e--EEECCC---cEEeeeEEEEcCCCCc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----K--LILNDG---TEVPYGLLVWSTGVGP 335 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~----~--v~~~~g---~~i~~D~vi~a~G~~p 335 (499)
.+...+.+.+++.|++++.+ +|++++ ++ + +++.++ .++.+|+||.|.|...
T Consensus 121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence 45666777788889999998 888875 33 3 445555 6899999999999976
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.001 Score=68.36 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=66.8
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC--C---------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--S--------------------------- 280 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l--~--------------------------- 280 (499)
..|+|||||++|+-+|..|++.+ .+|+++++.. .. +
T Consensus 12 ~dVlIVGaGpaGl~~A~~La~~G--------------~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (500)
T 2qa1_A 12 AAVIVVGAGPAGMMLAGELRLAG--------------VEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVET 77 (500)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCB
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccc
Confidence 48999999999999999999866 5666665431 10 0
Q ss_pred ------------------C------C-CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCc---EEeeeEE
Q 010845 281 ------------------S------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGT---EVPYGLL 327 (499)
Q Consensus 281 ------------------~------~-~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~---~i~~D~v 327 (499)
. + ...+.+.+.+.+++.|++++.+ +|++++. ++ +++.+++ ++.+|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~v 157 (500)
T 2qa1_A 78 STQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYL 157 (500)
T ss_dssp CCEEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEE
T ss_pred cccccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEE
Confidence 0 0 1245566677778889999998 8888853 44 4455664 7999999
Q ss_pred EEcCCCCcc
Q 010845 328 VWSTGVGPS 336 (499)
Q Consensus 328 i~a~G~~p~ 336 (499)
|.|.|....
T Consensus 158 VgADG~~S~ 166 (500)
T 2qa1_A 158 VGCDGGRSS 166 (500)
T ss_dssp EECCCTTCH
T ss_pred EECCCcchH
Confidence 999999864
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00094 Score=70.34 Aligned_cols=92 Identities=14% Similarity=0.300 Sum_probs=65.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-Cc-------CCC---------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LSS--------------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~-------l~~--------------------- 281 (499)
.+|+|||||+.|+.+|..+++.+ .+|+++++. .. +..
T Consensus 108 ~dvvVIG~GpAGl~aA~~l~~~g--------------~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~ 173 (598)
T 2x8g_A 108 YDLIVIGGGSGGLAAGKEAAKYG--------------AKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSH 173 (598)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccEEEECCCccHHHHHHHHHhCC--------------CeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHH
Confidence 48999999999999999999877 899999962 10 100
Q ss_pred -----------CC--------HHHHHHH-----------HHHHHhCCCEEEeCceEEEeCCeEEE--CCC--cEEeeeEE
Q 010845 282 -----------FD--------DRLRHYA-----------TTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYGLL 327 (499)
Q Consensus 282 -----------~~--------~~~~~~~-----------~~~l~~~gV~v~~~~v~~v~~~~v~~--~~g--~~i~~D~v 327 (499)
++ ..+.+++ ...+++.+|+++.+....++...+.+ .+| +++.+|.|
T Consensus 174 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~l 253 (598)
T 2x8g_A 174 ALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKI 253 (598)
T ss_dssp HHHHHHHTTCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEE
T ss_pred HHhhHHhCCccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEE
Confidence 00 0111111 12356779999988767777776655 355 46999999
Q ss_pred EEcCCCCcc
Q 010845 328 VWSTGVGPS 336 (499)
Q Consensus 328 i~a~G~~p~ 336 (499)
|+|||.+|.
T Consensus 254 viAtGs~p~ 262 (598)
T 2x8g_A 254 ILATGERPK 262 (598)
T ss_dssp EECCCEEEC
T ss_pred EEeCCCCCC
Confidence 999998876
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00016 Score=75.89 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=32.8
Q ss_pred CCcEEEECCchHHHHHHHhccCC------CCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~------g~~V~lie~~~~~ 97 (499)
..+|||||||+||+++|..|++. |++|+|||+.+..
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~ 76 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 76 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence 37999999999999999999998 9999999998654
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00073 Score=70.69 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEe-C--C---eEEEC--CCc--EEeeeEEEEcCCCCcc
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVD-S--Q---KLILN--DGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~-~--~---~v~~~--~g~--~i~~D~vi~a~G~~p~ 336 (499)
+...+.+.+++.||+++++ +|.++. + + +|++. +|+ ++.+|.||+|+|..+.
T Consensus 257 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 257 VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp HHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred HHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 4455666777889999999 888873 2 2 35554 564 6899999999997663
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00021 Score=76.66 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=66.9
Q ss_pred CCcEEEEC--CchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-E
Q 010845 62 KPRVVVLG--SGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (499)
Q Consensus 62 ~~~VvIIG--gG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (499)
.++|+||| ||+.|+.+|..|++.|.+|+++++.+.+.-.. ........+.+. +.+ .+++++. .
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~----------~~~~~~~~l~~~---l~~-~GV~i~~~~ 588 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT----------NNTFEVNRIQRR---LIE-NGVARVTDH 588 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG----------GGGTCHHHHHHH---HHH-TTCEEEESE
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc----------ccchhHHHHHHH---HHH-CCCEEEcCc
Confidence 46799999 99999999999999999999999887532110 000111122222 222 5777766 4
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+|+.++.+. +.+..... +++.++++|.||+|+|..|+.
T Consensus 589 ~V~~i~~~~--~~v~~~~~------~~~~~i~aD~VV~A~G~~p~~ 626 (690)
T 3k30_A 589 AVVAVGAGG--VTVRDTYA------SIERELECDAVVMVTARLPRE 626 (690)
T ss_dssp EEEEEETTE--EEEEETTT------CCEEEEECSEEEEESCEEECC
T ss_pred EEEEEECCe--EEEEEccC------CeEEEEECCEEEECCCCCCCh
Confidence 888998654 33332111 123579999999999998763
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=8e-05 Score=76.97 Aligned_cols=53 Identities=25% Similarity=0.247 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEeC--C----eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 284 DRLRHYATTQLSKSGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~~v~~v~~--~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+.+.+.+.+++.||+++.++|++++. + .|++.+|+++.+|.||.|+|....
T Consensus 173 ~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 173 DEVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 4677778888888999999888888753 2 366788889999999999998765
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00011 Score=77.51 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=34.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
.++|||||||++|+++|..|++.|++|+|||+.+...
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g 82 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS 82 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence 4799999999999999999999999999999987644
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00071 Score=74.14 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010845 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
+...+.+.+++.|++++.+ +|++++. + .|.+.+| ++.||.||+|+|.....+...++
T Consensus 153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g 215 (830)
T 1pj5_A 153 AVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIG 215 (830)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhC
Confidence 4445566677889999988 8888853 3 3556666 79999999999998765544443
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00037 Score=68.67 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=28.6
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.++|+|||||.+|+-+|..|+ .+ .+|+++++.
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G--------------~~V~vlE~~ 40 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AH--------------GRVVVLERE 40 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TT--------------SCEEEECSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-CC--------------CCEEEEECC
Confidence 458999999999999999998 46 899999986
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.28 E-value=8.1e-05 Score=74.47 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~ 95 (499)
..+|+|||||++|+++|+.|++. |++|+|||+..
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~ 71 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 47999999999999999999998 99999999975
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=5.8e-05 Score=76.55 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC----------------C----eEEECCCcEE--eeeEEEEcCCCCcchhc
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS----------------Q----KLILNDGTEV--PYGLLVWSTGVGPSTLV 339 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~----------------~----~v~~~~g~~i--~~D~vi~a~G~~p~~~~ 339 (499)
+..+...+.+.+++.|++++.+ +|++++. + +|.+.+| ++ .+|.||+|+|.....++
T Consensus 180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~~l~ 258 (448)
T 3axb_A 180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSNRLL 258 (448)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHHHHH
Confidence 3478888888999999999998 8988853 2 3556667 68 99999999998876665
Q ss_pred ccCC
Q 010845 340 KSLD 343 (499)
Q Consensus 340 ~~~~ 343 (499)
..++
T Consensus 259 ~~~g 262 (448)
T 3axb_A 259 NPLG 262 (448)
T ss_dssp GGGT
T ss_pred HHcC
Confidence 5544
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=76.04 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECC---C--cEEeeeEEEEcCCCCcchhcccCCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILND---G--TEVPYGLLVWSTGVGPSTLVKSLDL 344 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~---g--~~i~~D~vi~a~G~~p~~~~~~~~l 344 (499)
+..+...+.+.+++.|++++.+ +|+++.. + +|.+.+ | .++.+|.||.|+|.....+....+.
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~ 241 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRS 241 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCC
Confidence 3567777788888999999998 8888753 3 355543 3 4799999999999887665554443
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00022 Score=76.24 Aligned_cols=82 Identities=22% Similarity=0.343 Sum_probs=61.4
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC----------CCCC--HHHHHHHHHHHHhC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------SSFD--DRLRHYATTQLSKS 297 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l----------~~~~--~~~~~~~~~~l~~~ 297 (499)
.++|+|||||+.|+.+|..|++.+ .+|+++++.+.+ +... .++...+.+.+++.
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g--------------~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARG--------------HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVT 438 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999998866 899999986322 1111 13445566777888
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEE-eeeEEEEcCCCCcc
Q 010845 298 GVRLVRG-IVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i-~~D~vi~a~G~~p~ 336 (499)
||+++.+ .+.. ..+ .+|.||+|||.+|.
T Consensus 439 gv~~~~~~~v~~-----------~~~~~~d~lviAtG~~p~ 468 (671)
T 1ps9_A 439 GVTLKLNHTVTA-----------DQLQAFDETILASGIVPR 468 (671)
T ss_dssp TCEEEESCCCCS-----------SSSCCSSEEEECCCEEEC
T ss_pred CCEEEeCcEecH-----------HHhhcCCEEEEccCCCcC
Confidence 9999988 4321 123 89999999999876
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.001 Score=66.44 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=64.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCCcCCC------C----------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSS------F---------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~~l~~------~---------------------- 282 (499)
+|+|||||++|+-+|..|++.+ .+ |+++++...... +
T Consensus 6 dVvIVGaG~aGl~~A~~L~~~G--------------~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~ 71 (410)
T 3c96_A 6 DILIAGAGIGGLSCALALHQAG--------------IGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAI 71 (410)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSE
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCC
Confidence 8999999999999999999876 67 888886421100 0
Q ss_pred ----------------------------------CHHHHHHHHHHHHh-CC-CEEEeC-ceEEEeC-C--eEEECC---C
Q 010845 283 ----------------------------------DDRLRHYATTQLSK-SG-VRLVRG-IVKDVDS-Q--KLILND---G 319 (499)
Q Consensus 283 ----------------------------------~~~~~~~~~~~l~~-~g-V~v~~~-~v~~v~~-~--~v~~~~---g 319 (499)
...+.+.+.+.+++ .| ++++.+ +|++++. + .+++.+ |
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~~~~v~v~~~~~~~g 151 (410)
T 3c96_A 72 PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHG 151 (410)
T ss_dssp EECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTS
T ss_pred CcceEEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEecCCccEEEEecCCCC
Confidence 01344555566655 35 689888 7777752 3 355554 7
Q ss_pred --cEEeeeEEEEcCCCCcc
Q 010845 320 --TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 320 --~~i~~D~vi~a~G~~p~ 336 (499)
+++.+|+||.|.|..+.
T Consensus 152 ~~~~~~ad~vV~AdG~~S~ 170 (410)
T 3c96_A 152 KPQALGADVLVGADGIHSA 170 (410)
T ss_dssp CEEEEEESEEEECCCTTCH
T ss_pred CceEEecCEEEECCCccch
Confidence 57999999999999875
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00017 Score=74.93 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||||+|||++|..|++ |.+|+|||+.+.
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 4799999999999999999999 999999999864
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=71.67 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCeE--EECCCcEEeeeEEEEcCCCCcc
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~v--~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+.+.+.+.+++.|++++++ +|++|. ++.+ +..+|+++.||.||+++|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence 477788888888899999998 788774 3333 2357889999999999998875
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0003 Score=76.55 Aligned_cols=84 Identities=12% Similarity=0.209 Sum_probs=51.7
Q ss_pred cccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhccCCCCeEEEEc
Q 010845 13 AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVS 92 (499)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie 92 (499)
..|+.++.|+..+.| ..+..+.+|..+....... ..+..........++|+|||||++||++|..|++.|++|+|+|
T Consensus 232 ~~~~~~~~r~~~~~p-~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E 308 (852)
T 2xag_A 232 EATLQQLEAPYNSDT-VLVHRVHSYLERHGLINFG--IYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 308 (852)
T ss_dssp HHHHHHCCTTTTSCH-HHHHHHHHHHHHTTSSSCS--SCBCSSCCCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCCcccCCc-HHHHHHHHHHHHHHHHhcC--cccccCCcccCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEE
Confidence 446677777766655 3333344443332210000 0000111112345799999999999999999999999999999
Q ss_pred CCCCccc
Q 010845 93 PRNHMVF 99 (499)
Q Consensus 93 ~~~~~~~ 99 (499)
+++....
T Consensus 309 ~~~~~GG 315 (852)
T 2xag_A 309 ARDRVGG 315 (852)
T ss_dssp SSSSSCT
T ss_pred ecCcCCC
Confidence 9876543
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00019 Score=75.02 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC---eEEEC---CCc--EEeeeEEEEcCCCCcchhccc
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLILN---DGT--EVPYGLLVWSTGVGPSTLVKS 341 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~---~v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~ 341 (499)
+..+...+.+.+++.|++++.+ +|+++. ++ +|.+. +|+ ++.+|.||.|+|.....+...
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~ 256 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNL 256 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHh
Confidence 4566667777788999999998 888875 33 35543 343 799999999999887655443
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00089 Score=74.41 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=65.7
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----C-----C----CHHHHHHHHHHHHhC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----S-----F----DDRLRHYATTQLSKS 297 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----~-----~----~~~~~~~~~~~l~~~ 297 (499)
.+|+|||+|+.|+.+|..+++.+ .+|+++++...+. . + +.++...+.+.+.+.
T Consensus 129 ~dVvVIGaGpAGl~AA~~la~~G--------------~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~ 194 (965)
T 2gag_A 129 TDVLVVGAGPAGLAAAREASRSG--------------ARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEA 194 (965)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHS
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999999999876 8999999863111 1 1 123444555566664
Q ss_pred -CCEEEeC-ceEEEeCCe-----------EEE--------CCCcEEeeeEEEEcCCCCcc
Q 010845 298 -GVRLVRG-IVKDVDSQK-----------LIL--------NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 -gV~v~~~-~v~~v~~~~-----------v~~--------~~g~~i~~D~vi~a~G~~p~ 336 (499)
+|+++.+ +|.++..+. +.+ .++.++.+|.+|+|||..|.
T Consensus 195 ~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~ 254 (965)
T 2gag_A 195 EETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHER 254 (965)
T ss_dssp TTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEEC
T ss_pred CCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccC
Confidence 9999988 788776532 111 11236899999999999875
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00028 Score=74.82 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..|++.|++|+|||+.+
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~ 38 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 4689999999999999999999999999999875
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00025 Score=71.92 Aligned_cols=51 Identities=10% Similarity=-0.002 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC---C---eEEECCCcEEeeeEEEEcCCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS---Q---KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---~---~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
.++.+.+.+.+++.|++++++ .|++|.. + +|++.+|+++.||.||.+++..
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 478888889999999999999 8988853 2 4778888899999999999988
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00024 Score=74.50 Aligned_cols=34 Identities=29% Similarity=0.221 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|||||||+||+++|..|++.|.+|+|||+.+
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~ 40 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3689999999999999999999999999999974
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0003 Score=74.96 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccC-----CCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-----SLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-----~g~~V~lie~~~~ 96 (499)
+.+|+|||||++||++|..|++ .|++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 4689999999999999999999 9999999998754
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00028 Score=76.16 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
..++|+|||||++|+++|..|++.|++|+|+|+++...
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~g 372 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIG 372 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccccee
Confidence 45799999999999999999999999999999987644
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00039 Score=68.83 Aligned_cols=84 Identities=20% Similarity=0.362 Sum_probs=62.9
Q ss_pred cEEEeCcChHHHHHHHHHHHH--HHHHHHHhcCCCCCceEEEEEeCCCcC------------------------CC----
Q 010845 232 HCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEANEIL------------------------SS---- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~--~~~~~~~~~~~~~~~~~Vtlv~~~~~l------------------------~~---- 281 (499)
+|+|||||+.|+.+|..|++. + .+|+++++.... ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G--------------~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPL--------------WAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERL 67 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTT--------------SEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGG
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC--------------CCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHH
Confidence 799999999999999999987 5 788888864211 00
Q ss_pred ----------------------------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCC
Q 010845 282 ----------------------------FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 282 ----------------------------~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G 332 (499)
...++.+.+.+.+++.||+++.+ +|++++.. +++.+|+||.|.|
T Consensus 68 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------~~~~ad~vV~AdG 140 (381)
T 3c4a_A 68 NPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------PLADYDLVVLANG 140 (381)
T ss_dssp CCEEECCEEEEESSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------CGGGCSEEEECCG
T ss_pred hhccccceEEEeCCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------ccccCCEEEECCC
Confidence 01346667777788889999988 78777542 1357999999999
Q ss_pred CCcc
Q 010845 333 VGPS 336 (499)
Q Consensus 333 ~~p~ 336 (499)
..+.
T Consensus 141 ~~S~ 144 (381)
T 3c4a_A 141 VNHK 144 (381)
T ss_dssp GGGG
T ss_pred CCch
Confidence 8764
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.003 Score=63.55 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=29.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce-EEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~ 277 (499)
.|+|||||..|+-+|..|++.+ . +|+++++..
T Consensus 8 dVvIIGgG~aGlsaA~~La~~G--------------~~~V~vlE~~~ 40 (438)
T 3dje_A 8 SLLIVGAGTWGTSTALHLARRG--------------YTNVTVLDPYP 40 (438)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEeCCC
Confidence 7999999999999999999877 7 899999864
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00029 Score=77.26 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
+.+|||||||++|+++|++|++.|+ +|+|||++..
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL 39 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 4799999999999999999999998 9999999763
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00034 Score=71.38 Aligned_cols=37 Identities=27% Similarity=0.531 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCcc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMV 98 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~~ 98 (499)
.++|+|||||++|+++|..|++.|+ +|+|+|+++...
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~g 41 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG 41 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCC
Confidence 4789999999999999999999998 899999987644
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.004 Score=64.76 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=29.4
Q ss_pred ccEEEeCcChHHHHHHHHHHH---HHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSD---FIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~---~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.+|+|||||+.|.-+|..|++ .+ .+|+|+++..
T Consensus 26 ~dVvIVGgG~aGl~aA~~La~~~~~G--------------~~V~liE~~~ 61 (550)
T 2e4g_A 26 DKILIVGGGTAGWMAASYLGKALQGT--------------ADITLLQAPD 61 (550)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTTTS--------------SEEEEEECCC
T ss_pred CcEEEECCCHHHHHHHHHHHhhcCCC--------------CcEEEEeCCC
Confidence 489999999999999999998 44 8999999864
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00028 Score=74.34 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..|++.|++|+|||+..
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~ 51 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF 51 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 3699999999999999999999999999999874
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0017 Score=66.68 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=29.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|..|++.+ .+|+++++.+
T Consensus 5 DVvIIGgGi~G~~~A~~La~~G--------------~~V~llE~~~ 36 (501)
T 2qcu_A 5 DLIVIGGGINGAGIAADAAGRG--------------LSVLMLEAQD 36 (501)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCC--------------CCEEEEECCC
Confidence 7999999999999999999887 8999999864
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0045 Score=64.01 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=29.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.+|+|||||+.|.-+|..|++.... ...-.....+.+|+|+++..
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~~~~--~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 8 TEIIIVGGGTAGWITAGLLAAEHNV--DKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHHE--ETTEECSSCSCEEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhhhcc--ccccccCCCCCeEEEEeCCC
Confidence 4899999999999999999872100 00000000128999999863
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0049 Score=63.43 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=28.0
Q ss_pred cEEEeCcChHHHHHHHHHHH---HHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSD---FIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~---~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
+|+|||||++|.-+|..|++ .+ .+|+|+++..
T Consensus 4 dVvIVGgG~aGl~~A~~La~~~~~G--------------~~V~lvE~~~ 38 (511)
T 2weu_A 4 SVVIVGGGTAGWMTASYLKAAFDDR--------------IDVTLVESGN 38 (511)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHGGG--------------SEEEEEEC--
T ss_pred eEEEECCCHHHHHHHHHHHhhcCCC--------------CEEEEEecCC
Confidence 79999999999999999998 55 8999999864
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00046 Score=73.21 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhcc---C-CCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGID---T-SLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~---~-~g~~V~lie~~~ 95 (499)
..+|||||||+|||+||..|+ + .|.+|+|||+.+
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~ 59 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 59 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence 479999999999999999999 6 899999999976
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0004 Score=73.66 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccCC------CCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~------g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..|++. |.+|+|||+..
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~ 61 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence 47999999999999999999987 99999999864
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00034 Score=73.55 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=40.3
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCC-chHHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p-~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.||.+.|| ..|++||+|+|+... ..|...+. .....|.-.|+.+++++...+.
T Consensus 359 ~GGi~vd~~~~~-~IpGLyAaGe~a~~g-~hGanrl~gnsl~~~~vfGr~Ag~~aa~~~~ 416 (602)
T 1kf6_A 359 MGGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRLAGEQATERAA 416 (602)
T ss_dssp CCEEECCTTSBC-SSBTEEECGGGEECS-SSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECCCCcc-ccCCEEEcccccccc-ccCCCCCccHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999 999999999997411 01222222 2334577779999999877653
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00044 Score=71.00 Aligned_cols=90 Identities=22% Similarity=0.380 Sum_probs=61.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-----------CCC---HHHHHHHHHHHHh
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------SFD---DRLRHYATTQLSK 296 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-----------~~~---~~~~~~~~~~l~~ 296 (499)
.+|+|||||+.|+.+|..|++. .+|+++++.+.+. .++ .++...+.+.+ +
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~---------------~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~ 172 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY---------------LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-N 172 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT---------------CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-C
T ss_pred CCEEEECccHHHHHHHHHHHhc---------------CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-h
Confidence 4899999999999999998753 5799999863221 111 22223333333 5
Q ss_pred CCCEEEeC-ceEEEeCC--eEEE---CCCc--EEeeeEEEEcCCCCcc
Q 010845 297 SGVRLVRG-IVKDVDSQ--KLIL---NDGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~--~v~~---~~g~--~i~~D~vi~a~G~~p~ 336 (499)
.||+++.+ .+.+++.+ .+.+ ++++ ++.+|.+|+|+|..|.
T Consensus 173 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~ 220 (493)
T 1y56_A 173 ENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS 220 (493)
T ss_dssp TTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC
T ss_pred cCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc
Confidence 69999887 67666543 2322 4454 6899999999998875
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.002 Score=67.12 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=29.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|..|+..+ .+|+++++.+
T Consensus 20 DVvVIGgGi~Gl~~A~~La~~G--------------~~V~LlEk~d 51 (561)
T 3da1_A 20 DLLVIGGGITGAGIALDAQVRG--------------IQTGLVEMND 51 (561)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCC
Confidence 7999999999999999999887 8999999863
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0049 Score=63.42 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeCC------eEEECC-Cc--EEeee-EEEEcCCCCc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ------KLILND-GT--EVPYG-LLVWSTGVGP 335 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~~------~v~~~~-g~--~i~~D-~vi~a~G~~p 335 (499)
.+.+.+.+.+++.||+++++ +|+++..+ +|++.+ ++ ++.+| .||+|+|-..
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 45556667777889999999 88887532 455543 33 58996 9999999765
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00085 Score=72.32 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCcEEEEC--CchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-E
Q 010845 62 KPRVVVLG--SGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (499)
Q Consensus 62 ~~~VvIIG--gG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (499)
.++|+||| ||+.|+.+|..|++.|.+|+||++.+ +.-.... ... ...+.+. +. ..+++++. .
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~--------~~~--~~~~~~~---l~-~~GV~i~~~~ 592 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHF--------TLE--YPNMMRR---LH-ELHVEELGDH 592 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHH--------TTC--HHHHHHH---HH-HTTCEEECSE
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccc--------ccc--HHHHHHH---HH-hCCCEEEcCc
Confidence 46899999 99999999999999999999999977 3210000 000 1112221 22 25777765 4
Q ss_pred EEEEEECCCCEEEEeeecCcc-c-----------cCCCceeeeeCCeEEEcCCCCccC
Q 010845 139 HCAGIDTDNHVVHCETVTDEL-R-----------TLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~-~-----------~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+++.|+.+ .+.+.....+. . ...++...+++|.||+|+|..|+.
T Consensus 593 ~v~~i~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~ 648 (729)
T 1o94_A 593 FCSRIEPG--RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648 (729)
T ss_dssp EEEEEETT--EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred EEEEEECC--eEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence 78888754 34433211110 0 001223359999999999988764
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00031 Score=74.46 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCC--------CeEEEEcCCC-Cc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL--------YDVVCVSPRN-HM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g--------~~V~lie~~~-~~ 97 (499)
+++|+|||||++||++|+.|.+.| ++|+|+|+++ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 478999999999999999999887 9999999998 65
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00071 Score=70.42 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=33.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++++|||||++|+.+|.+|++.|++|+|+|+.+.
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 457999999999999999999999999999999864
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0065 Score=61.81 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEEC-CCcEEeeeEEEEcCCCCcc
Q 010845 287 RHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILN-DGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~~gV~v~~~-~v~~v~--~~~---v~~~-~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+++.||+++.+ .+ ++. ++. +.+. ++.++.+|.||+|+|..+.
T Consensus 122 ~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~ 177 (472)
T 2e5v_A 122 FNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY 177 (472)
T ss_dssp HHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred HHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence 344555566789999998 68 874 343 3443 3345789999999999875
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0049 Score=65.34 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCC--EEEeC-ceEEEeCC------e--EEEC------CC--cEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSGV--RLVRG-IVKDVDSQ------K--LILN------DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV--~v~~~-~v~~v~~~------~--v~~~------~g--~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.|+ +++.+ +|++++.+ . |+++ +| +++.+|+||.|.|....
T Consensus 142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~ 212 (639)
T 2dkh_A 142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN 212 (639)
T ss_dssp HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH
Confidence 566677788888876 89988 88887532 2 3443 45 57999999999998764
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=67.30 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~~~~ 96 (499)
.+|+||||||+||+.+|.+|++ .+++|+|||+.+.
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 5899999999999999999997 6799999999864
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=60.19 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECC---C--cEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILND---G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~---g--~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++. ++.+ +|++++. ++ +++.+ | +++.+|+||.|.|....
T Consensus 139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSP 197 (549)
T ss_dssp HHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH
Confidence 3445556666655 7777 7888753 33 44544 6 47999999999998753
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0018 Score=67.10 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+|+||||||.||+.+|.+|++ |.+|+|+|+.+..
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence 4799999999999999999999 9999999998753
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0025 Score=66.45 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~ 96 (499)
..+|+||||||.||+.+|.+|++.+ .+|+|||+.+.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 3489999999999999999999987 79999999875
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0027 Score=65.26 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..++++|||+|++|+.+|..|.+.|.+|+|||+....
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~ 46 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW 46 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 4579999999999999999999999999999998753
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0035 Score=52.17 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.02 Score=59.74 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=29.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|..|++.+ .+|+++++.+
T Consensus 34 DVvVIGgGi~G~~~A~~La~rG--------------~~V~LlE~~~ 65 (571)
T 2rgh_A 34 DLLIIGGGITGAGVAVQAAASG--------------IKTGLIEMQD 65 (571)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCC
Confidence 7999999999999999999887 8999998754
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.003 Score=64.94 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
.++++|||+|++|+.+|..|++.|.+|+|||+.....
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 4799999999999999999999999999999987544
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0039 Score=64.97 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~ 95 (499)
..+|+||||||.||+.+|.+|.+. +++|+|||+.+
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 358999999999999999999974 79999999987
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0056 Score=51.77 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.+|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4689999999999999999999999999999863
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0057 Score=51.89 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...+|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 34689999999999999999999999999999865
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0074 Score=50.18 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.+|+|+|.|..|...|..|.+.|++|++||+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4689999999999999999999999999999975
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.016 Score=59.34 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC---C---------eEEECCC-----cEEeeeEEEEcCCCCcc
Q 010845 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS---Q---------KLILNDG-----TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~---~---------~v~~~~g-----~~i~~D~vi~a~G~~p~ 336 (499)
++.+|+....++.+..+..+ +|++++. + .|++.++ +++.|+.||+|+|..|.
T Consensus 146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~ 215 (501)
T 4b63_A 146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAK 215 (501)
T ss_dssp HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEEC
T ss_pred HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCC
Confidence 45666666666767778888 7887742 1 3444433 36889999999998776
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0069 Score=49.98 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||+|..|...|..|.+.|++|+++|+++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 589999999999999999999999999999854
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.006 Score=63.86 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCcEEEECCchHHHHHHHhccC-CCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~~~~~ 97 (499)
..++++|||||++|+.+|..|++ .|.+|+|||+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 35799999999999999999999 79999999998754
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0069 Score=62.83 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=32.9
Q ss_pred CCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~~ 97 (499)
.++++|||||.+|+.+|.+|++. +.+|+|||+.+..
T Consensus 13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 47999999999999999999997 8999999998653
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0046 Score=64.29 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~~~~~ 97 (499)
.+|+||||||.||+.+|.+|++ .+++|+|||+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 3689999999999999999998 68999999998654
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.041 Score=58.42 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=19.3
Q ss_pred cEEEeCcChHHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSD 251 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~ 251 (499)
.|+|||||++|+-+|..|++
T Consensus 10 dVlIVGaGpaGL~lA~~La~ 29 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSE 29 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred cEEEECcCHHHHHHHHHHhc
Confidence 79999999999999999998
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0084 Score=47.77 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~ 95 (499)
+++|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 468999999999999999999999 8999999864
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0088 Score=49.56 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4679999999999999999999999999999863
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.12 Score=55.78 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=29.7
Q ss_pred CCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 297 SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.|++|+++ .|++|+.+ .|++.+|+++.+|.||+|++.
T Consensus 542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~ 583 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL 583 (776)
T ss_dssp TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence 37889988 89999753 356678889999999999853
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.012 Score=54.20 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=30.3
Q ss_pred CCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 362 ~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.++||++||++. ...+..|+..|+.+|+.|...|+
T Consensus 293 ~~~~v~l~GDa~~----------g~gv~~A~~sG~~aA~~I~~~L~ 328 (336)
T 3kkj_A 293 ADLGIYVCGDWCL----------SGRVEGAWLSGQEAARRLLEHLQ 328 (336)
T ss_dssp TTTTEEECCGGGT----------TSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEecccC----------CcCHHHHHHHHHHHHHHHHHHhh
Confidence 5689999999874 23478899999999999998886
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.015 Score=52.32 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=32.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
-+.++|+|||||..|...|..|.+.|.+|+||+++.
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 446799999999999999999999999999999863
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.16 Score=52.90 Aligned_cols=49 Identities=16% Similarity=0.026 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEeC---C---eEEE---CCCc--EEeeeEEEEcCCCCc
Q 010845 287 RHYATTQLSKSGVRLVRG-IVKDVDS---Q---KLIL---NDGT--EVPYGLLVWSTGVGP 335 (499)
Q Consensus 287 ~~~~~~~l~~~gV~v~~~-~v~~v~~---~---~v~~---~~g~--~i~~D~vi~a~G~~p 335 (499)
...+.+.+++.||+++.+ .|.++.. + +|.+ .+|+ ++.++.||+|+|...
T Consensus 146 ~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 146 LHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp HHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 334455566779999998 7888742 2 3443 4565 689999999999754
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.036 Score=57.29 Aligned_cols=30 Identities=20% Similarity=0.502 Sum_probs=26.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||+|..|+-+|..+++ + .+|+++++.
T Consensus 10 DVvVVG~G~AGl~aAl~la~-G--------------~~V~vlEk~ 39 (540)
T 1chu_A 10 DVLIIGSGAAGLSLALRLAD-Q--------------HQVIVLSKG 39 (540)
T ss_dssp SEEEECCSHHHHHHHHHHTT-T--------------SCEEEECSS
T ss_pred CEEEECccHHHHHHHHHHhc-C--------------CcEEEEECC
Confidence 79999999999999999987 6 678888765
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.015 Score=52.28 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=63.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~ 310 (499)
++|+|||||.+|...+..|.+.+ .+|+++.+. ..+++ .+..++.+|+++.....
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~G--------------A~VtVvap~-----~~~~l----~~l~~~~~i~~i~~~~~--- 85 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEG--------------AAITVVAPT-----VSAEI----NEWEAKGQLRVKRKKVG--- 85 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGC--------------CCEEEECSS-----CCHHH----HHHHHTTSCEEECSCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEECCC-----CCHHH----HHHHHcCCcEEEECCCC---
Confidence 59999999999999999998876 899999753 23343 33334556877644111
Q ss_pred CCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCC----CCCCCCCCCeEEecccc
Q 010845 311 SQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDE----WLRVPSVQDVFAVGDCS 373 (499)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~----~l~~~~~~~Ifa~GD~a 373 (499)
.+.--.+|+||.|||.... ..+... . +. .+.||- .+-.--.|-++--||..
T Consensus 86 -------~~dL~~adLVIaAT~d~~~N~~I~~~-a---k~-gi~VNvvD~p~~~~f~~Paiv~rg~l~ 141 (223)
T 3dfz_A 86 -------EEDLLNVFFIVVATNDQAVNKFVKQH-I---KN-DQLVNMASSFSDGNIQIPAQFSRGRLS 141 (223)
T ss_dssp -------GGGSSSCSEEEECCCCTHHHHHHHHH-S---CT-TCEEEC-----CCSEECCEEEEETTEE
T ss_pred -------HhHhCCCCEEEECCCCHHHHHHHHHH-H---hC-CCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence 0111248999999998764 322221 1 11 244431 12211357777777755
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.021 Score=57.59 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..++|+|||.|.+|+++|..|.+.|++|++.|.++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 45799999999999999999999999999999875
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.015 Score=54.07 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=32.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||-.|...|..|.+.|++|+||+++.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 35789999999999999999999999999999864
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.03 Score=53.95 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
+++|+|||+|..|...|..|+..|+ +|+|+|.+..
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~ 44 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG 44 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 4689999999999999999998887 9999998753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.025 Score=49.24 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~ 95 (499)
..+|+|+|+|..|..+|..|.+. |++|+++|+++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 46899999999999999999998 99999999864
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.024 Score=57.04 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.++|+|||.|.+|+++|..|.++|++|+++|.+..
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~ 39 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence 46899999999999999999999999999998764
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=94.32 E-value=0.17 Score=53.06 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEe--CC---eEEE---CCCc--EEeeeEEEEcCCCCc
Q 010845 288 HYATTQLSKSGVRLVRG-IVKDVD--SQ---KLIL---NDGT--EVPYGLLVWSTGVGP 335 (499)
Q Consensus 288 ~~~~~~l~~~gV~v~~~-~v~~v~--~~---~v~~---~~g~--~i~~D~vi~a~G~~p 335 (499)
..+.+.+.+.||+++.+ .+.++. ++ +|.+ .+|+ .+.++.||+|+|-..
T Consensus 159 ~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 159 HTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 33444455678999988 777763 33 3444 3565 689999999999755
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.027 Score=50.66 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=30.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 379999999999999999999999999999864
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.035 Score=54.15 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
|++|+|||||..|..+++.+++.|++|+++|.++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57999999999999999999999999999998764
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.051 Score=45.17 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|||+|..|...|..|.+.|++|++++++.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4689999999999999999999999999999864
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.044 Score=52.00 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|.|||+|.-|...|..|++.|++|+++|+++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999875
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.041 Score=54.04 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|+|||+|.+|+.+|..|...|.+|+++|+++.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~ 224 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA 224 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998763
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.039 Score=55.69 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|+|+|-.|...|..|...|++|++||+++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3689999999999999999999999999999873
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.048 Score=51.95 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=32.9
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+++|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 456799999999999999999999999999999865
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.046 Score=57.25 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEE--eC--C---eEEECCCcEEeeeEEEEcCCCCcc
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDV--DS--Q---KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v--~~--~---~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..+.+.+.+.+++.|.+++++ .|.+| ++ + +|.+.+|+++.||.||......|.
T Consensus 378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438 (650)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence 478888888999999999999 88886 33 2 455677999999999997776664
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.1 Score=50.09 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=53.1
Q ss_pred ccEEEeCcChHHHH-HHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve-~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++|.|||.|.+|+. +|..|.+.+ .+|+..+.... ++ ..+.|++.||+++.+ ....
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G--------------~~V~~~D~~~~----~~-----~~~~L~~~gi~v~~g~~~~~ 61 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAG--------------FEVSGCDAKMY----PP-----MSTQLEALGIDVYEGFDAAQ 61 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTT--------------CEEEEEESSCC----TT-----HHHHHHHTTCEEEESCCGGG
T ss_pred cEEEEEEECHHHHHHHHHHHHhCC--------------CEEEEEcCCCC----cH-----HHHHHHhCCCEEECCCCHHH
Confidence 58999999999997 788888877 89999987532 11 235577889998865 2111
Q ss_pred EeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 309 VDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 309 v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+ .. -.+|+||.++|..+.
T Consensus 62 l-------~~---~~~d~vV~Spgi~~~ 79 (326)
T 3eag_A 62 L-------DE---FKADVYVIGNVAKRG 79 (326)
T ss_dssp G-------GS---CCCSEEEECTTCCTT
T ss_pred c-------CC---CCCCEEEECCCcCCC
Confidence 1 00 148999999999886
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.075 Score=53.55 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=54.9
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
.++|+|||.|.+|+-+|..|.+.+ .+|+..+..... .+ ...+.|++.||+++.+ ...+
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G--------------~~V~~~D~~~~~--~~-----~~~~~L~~~gi~~~~g~~~~~ 67 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLG--------------AIVTVNDGKPFD--EN-----PTAQSLLEEGIKVVCGSHPLE 67 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTT--------------CEEEEEESSCGG--GC-----HHHHHHHHTTCEEEESCCCGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC--------------CEEEEEeCCccc--CC-----hHHHHHHhCCCEEEECCChHH
Confidence 469999999999999999999887 899999875310 01 2235678889999876 2110
Q ss_pred EeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 309 VDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 309 v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+ +. + .+|+||.++|..++
T Consensus 68 ~------~~-~---~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 68 L------LD-E---DFCYMIKNPGIPYN 85 (451)
T ss_dssp G------GG-S---CEEEEEECTTSCTT
T ss_pred h------hc-C---CCCEEEECCcCCCC
Confidence 0 00 0 27999999999886
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.043 Score=53.44 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...+|+|||+|..|+.+|..|...|.+|+++|+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999875
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.056 Score=51.92 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHH-HHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCR-LMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~-aA~~L~~~g~~V~lie~~~~ 96 (499)
.+++|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~ 39 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY 39 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 4578999999999996 78899999999999998753
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.063 Score=50.37 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|.|||+|.-|...|..|++.|++|+++|+++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999999999999999999875
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.057 Score=51.41 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|.|||+|.-|...|..++..|++|+|+|.++.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~ 40 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR 40 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46899999999999999999999999999998753
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.054 Score=52.68 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
...+|||+|||.||+.+|+.|...|. +|+++|++.
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G 222 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG 222 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 45799999999999999999988898 899999873
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.069 Score=51.04 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
+++|+|||+|..|...|..|...|+ +|+++|++.
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 3689999999999999999999898 999999864
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.047 Score=52.33 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=42.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC--------CC-HHHHHHHHHHHHhCCCEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FD-DRLRHYATTQLSKSGVRL 301 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~--------~~-~~~~~~~~~~l~~~gV~v 301 (499)
..|+|||+||.|+-+|..|+... .+.+|+++++...+.. ++ ..+...+.+.+++.||++
T Consensus 66 ~DV~IIGaGPAGlsAA~~la~~r------------~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~ 133 (326)
T 3fpz_A 66 SDVIIVGAGSSGLSAAYVIAKNR------------PDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPY 133 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHC------------TTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCC
T ss_pred CCEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEE
Confidence 47999999999999999997531 1289999998632110 11 112233455677889998
Q ss_pred EeC
Q 010845 302 VRG 304 (499)
Q Consensus 302 ~~~ 304 (499)
..+
T Consensus 134 ~~~ 136 (326)
T 3fpz_A 134 EDE 136 (326)
T ss_dssp EEC
T ss_pred EEC
Confidence 876
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.067 Score=48.45 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...++|+|.|| |..|...+..|.+.|++|+++++++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 34578999999 9999999999999999999999864
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.071 Score=50.63 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|.|||+|.-|...|..|.+.|++|+++++++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 3589999999999999999999999999999864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.078 Score=49.57 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|+|.|+|+.|...+..|.+.|++|++++++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999865
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.089 Score=52.39 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=32.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.+.+|.|||.|+.||..|..|++.|++|+.+|-++
T Consensus 19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 456799999999999999999999999999999764
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.082 Score=50.59 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||+|.-|...|..|.+.|++|+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 589999999999999999999999999999864
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.068 Score=51.88 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~ 94 (499)
...+|||+|||.+|..+|+.|...|. +|+++|++
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 45799999999999999999998888 79999997
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.077 Score=50.76 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+++|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 345799999999999999999999999999999864
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.08 Score=51.02 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
.++|.|||+|.-|...|..|.+.|++|++++++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 468999999999999999999999999999974
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.098 Score=46.61 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.++|.|||+|.-|.+.|..|.+.|++|+++|+++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998754
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.085 Score=52.17 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|+|||+|.+|+.+|..++..|.+|+++|+++
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999875
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.079 Score=53.81 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~ 95 (499)
+++|.|||.|+.|+..|..|++. |++|+++|++.
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 46899999999999999999887 79999999864
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.09 Score=52.58 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=29.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
++|+|||||++|+-+|..|++.+ .+|+++++.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G--------------~~V~viE~~ 54 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHD--------------VDVTVYTDR 54 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--------------CeEEEEcCC
Confidence 48999999999999999999987 899999975
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.11 Score=51.11 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...+|+|||+|.+|+.++..++..|.+|+++|+++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~ 206 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 206 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899999999999999999999999999998753
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.03 E-value=0.1 Score=50.58 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|.|||+|..|...|..|.+.|++|+++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.1 Score=52.93 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|.|||+|+-|+..|..|++.|++|+++|++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3689999999999999999999999999999864
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.11 Score=52.58 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhccCC-CC-eEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS-LY-DVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~-g~-~V~lie~~~~ 96 (499)
.++|.|||+|+-|+..|..|++. |+ +|+++|+++.
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 46899999999999999999999 99 9999998864
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.11 Score=48.55 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|.|||+|.-|...|..|.+.|++|+++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence 799999999999999999999999999998753
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.13 Score=51.20 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=30.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..++|.|||.|+-|+..|..|++ |++|+++|+++
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 44689999999999999999998 99999999874
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.22 Score=50.61 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
|++|||||||++||+||.+|++.|++|+|+|+++....
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG 38 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGG 38 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-----
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCC
Confidence 57999999999999999999999999999999987543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.2 Score=50.21 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...++|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 3457899999999999999999999999999999764
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.13 Score=49.13 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
+++.+|.|||+|..|.+.|..|...++ +|+|+|.++.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~ 42 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG 42 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 345789999999999999999988888 9999998753
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.13 Score=48.07 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|+|.|||+.|-..+..|.+.|++|+++++++
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 3689999999999999999999999999998864
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.097 Score=52.74 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||..|...+..|.+.|.+|+||+++.
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~ 45 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence 34789999999999999999999999999999864
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.098 Score=48.05 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..+|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 4689999999999999999999997 799999874
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.12 Score=50.29 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|+|+|+|.+|+.++..|+..|.+|+++|+++
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3789999999999999999999999999999864
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.15 Score=49.56 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.092 Score=50.00 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=30.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||+|.-|.+.|..|.+.|++|+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 589999999999999999999999999999864
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=91.62 E-value=0.1 Score=47.34 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|+|+|..|...|..|.+.|+ |+++|+++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~ 41 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN 41 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence 4689999999999999999999999 99999864
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.11 Score=52.07 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||+|.-|+..|..|++.|++|+++|+++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 589999999999999999999999999999875
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.15 Score=48.82 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
+++|+|||+|..|...|..|+..|+ +|+|+|.+.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 4689999999999999999998887 999999865
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.11 Score=50.07 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCCCCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 58 KANEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 58 ~~~~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...++++|+|.|| |+.|...+..|.+.|++|+++++.+.
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 54 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS 54 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 3345678999999 99999999999999999999998753
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.14 Score=49.02 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
++|+|||||..|...|..|+..|+ +|+|+|.+..
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~ 49 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG 49 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 589999999999999999999888 9999998753
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.13 Score=51.14 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.+|+|||.|..|...|..|.+.|++|++||.++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 46899999999999999999999999999998753
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.2 Score=51.01 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=29.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
++|+|||||.+|+.+|..|++.+ .+|+++++.
T Consensus 34 ~~v~IiGaG~~Gl~aA~~l~~~g--------------~~v~vlE~~ 65 (498)
T 2iid_A 34 KHVVIVGAGMAGLSAAYVLAGAG--------------HQVTVLEAS 65 (498)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHT--------------CEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 58999999999999999999877 889999875
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.16 Score=45.41 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=31.2
Q ss_pred CCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|+|.|| |+.|...+..|.+.|++|+++++++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 478999996 9999999999999999999999874
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.14 Score=48.64 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.1
Q ss_pred CcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
++|+|||+|..|.+.|..|+..|+ +|+|+|.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 379999999999999999998888 999999864
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.16 Score=44.49 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.6
Q ss_pred CcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|+|| |..|...+..|.+.|++|+++++++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 68999999 9999999999999999999999864
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.16 Score=48.36 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~ 94 (499)
+.++|.|||+|..|...|..|+..|+ +|+|+|.+
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 45789999999999999999998899 99999986
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.13 Score=45.94 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|.|||+|..|...|..|.+.|++|++++++.
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998863
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=91.13 E-value=0.17 Score=50.23 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=29.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
+|+|||||.+|+-+|..|++.+ .+|+++|+..
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G--------------~~V~vlE~~~ 33 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAG--------------HEVEVFERLP 33 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTT--------------CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CceEEEeCCC
Confidence 7999999999999999999877 8999999863
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=91.12 E-value=0.23 Score=48.60 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|+|||+|.-|..++..+++.|++|+++|+.+.
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~ 46 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED 46 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 457899999999999999999999999999998754
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.10 E-value=0.16 Score=48.51 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=30.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
+.||+|||+|..|.+.|..|...++ +|+|+|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999988877 899999864
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.14 Score=49.55 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=29.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||.+|+-+|..|++.+ .+|+++++.
T Consensus 6 dvvIIG~G~~Gl~~A~~La~~G--------------~~V~vlE~~ 36 (369)
T 3dme_A 6 DCIVIGAGVVGLAIARALAAGG--------------HEVLVAEAA 36 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 7999999999999999999877 899999987
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.14 Score=48.81 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
.+.||+|||+|..|.+.|..|...+. ++.|+|.+.
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~ 41 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT 41 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 34699999999999999999987664 899999753
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.14 Score=49.85 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+|.|||+|.-|...|..|.+.|++|+++++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 89999999999999999999999999999864
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.12 Score=49.18 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=30.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
+.+++|.|||.|.-|...|..|.+.|+ +|+++|+++
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~ 58 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS 58 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 345799999999999999999999999 999999863
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.22 Score=50.26 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..++|.|||+|.-|...|..|++.|++|+++|+++
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 34689999999999999999999999999999875
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.087 Score=47.36 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEE-EcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVC-VSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~l-ie~~~ 95 (499)
.+++|.|||+|.-|...|..|.+.|++|++ +++++
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 356899999999999999999999999999 77764
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.19 Score=47.98 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=31.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
++++|.|||+|..|.+.|..|...++ +|+|+|.++.
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~ 40 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG 40 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence 35789999999999999999988777 9999998753
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.17 Score=49.50 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|+|+|..|..+|..|+..|++|+++|+++
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4789999999999999999999999999999864
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.84 E-value=0.2 Score=47.11 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+++|.|||+|.-|-..|..|+ .|++|+++|+++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 3579999999999999999999 999999999875
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.15 Score=49.72 Aligned_cols=32 Identities=41% Similarity=0.496 Sum_probs=29.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
+|+|||||.+|+.+|..|++.+ .+|+++++..
T Consensus 7 dVvIIGgGi~Gl~~A~~La~~G--------------~~V~lle~~~ 38 (382)
T 1y56_B 7 EIVVIGGGIVGVTIAHELAKRG--------------EEVTVIEKRF 38 (382)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCC
Confidence 7999999999999999999876 8899999864
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.19 Score=47.47 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++|.|||.|.-|...|..|.+.|++|+++|+++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998763
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.19 Score=49.66 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+|.|||+|..|+..|..|++ |++|+++|+++
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 79999999999999999999 99999999864
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=90.71 E-value=0.16 Score=48.40 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
+++|.|||+|..|...|..|+..|+ +|+++|.++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~ 39 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG 39 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence 3689999999999999999998888 9999998753
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.19 Score=48.75 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=28.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||||.+|+-+|..|++.+ .+|+++++.
T Consensus 8 dVvVIG~Gi~Gls~A~~La~~G--------------~~V~vle~~ 38 (363)
T 1c0p_A 8 RVVVLGSGVIGLSSALILARKG--------------YSVHILARD 38 (363)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CEEEEEecc
Confidence 7999999999999999999876 899999974
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.64 Score=38.10 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=50.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~ 310 (499)
.+|+|+|.|..|..+|..|...+ .+|+++++. ++.. +.+++.|+.++.+...+.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g--------------~~v~vid~~-------~~~~----~~~~~~g~~~i~gd~~~~- 61 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD--------------IPLVVIETS-------RTRV----DELRERGVRAVLGNAANE- 61 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESC-------HHHH----HHHHHTTCEEEESCTTSH-
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECC-------HHHH----HHHHHcCCCEEECCCCCH-
Confidence 38999999999999999999876 899999985 2222 234557888765411100
Q ss_pred CCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 311 SQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+ +..-..-.+|.+|.+++...
T Consensus 62 --~~-l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 62 --EI-MQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp --HH-HHHTTGGGCSEEEECCSCHH
T ss_pred --HH-HHhcCcccCCEEEEECCChH
Confidence 00 00000125899999998654
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.18 Score=49.26 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=32.6
Q ss_pred CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 356 ~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.+|+++..+|+|++|+.+.+ .-...|..||-.|+.|+...+.
T Consensus 321 ~tle~k~~~~Lf~AGqi~G~----------~Gy~eAaa~Gl~AG~naa~~~~ 362 (443)
T 3g5s_A 321 ETLEFREAEGLYAAGVLAGV----------EGYLESAATGFLAGLNAARKAL 362 (443)
T ss_dssp TTSEETTEEEEEECGGGGTB----------CSHHHHHHHHHHHHHHHHHHHT
T ss_pred hhceecCCCCEEECcccccc----------HHHHHHHHhHHHHHHHHHHHhc
Confidence 55666678899999999853 1134788999999999888776
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.16 Score=49.57 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=29.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
+|+|||||.+|+-+|..|++.+ .+|+++++..
T Consensus 5 dvvIIGaG~~Gl~~A~~La~~G--------------~~V~vie~~~ 36 (389)
T 2gf3_A 5 DVIVVGAGSMGMAAGYQLAKQG--------------VKTLLVDAFD 36 (389)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCC
Confidence 7999999999999999999877 8999999864
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.22 Score=44.19 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=29.7
Q ss_pred cEEEEC-CchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 64 RVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIG-gG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+|+||| +|..|...|..|.+.|++|+++++++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 699999 99999999999999999999999864
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.34 Score=50.63 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~ 95 (499)
..+|||||||+||+++|..|++.| .+|+|||+.+
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~ 40 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 368999999999999999999988 9999999974
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.18 Score=47.63 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.19 Score=44.66 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=30.0
Q ss_pred CcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|+|| |..|...+..|.+.|++|+++++++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 36999996 9999999999999999999999864
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=90.52 E-value=0.15 Score=48.19 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=29.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
+.+|+|||||..|...|..|...|+ +|+|+|.+.
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 4689999999999999998888787 899999865
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.2 Score=46.63 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=30.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|+|+|-+|.++|..|.+.|.+|++++++.
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4689999999999999999999999999998863
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.24 Score=46.76 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
.++|+|||+|-+|..+|..|.+.|+ +|+|++++.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4689999999999999999999998 899998863
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.21 Score=46.28 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|||+|-+|-++|..|.+.|.+|+|++|+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5789999999999999999999999999999875
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.22 Score=47.34 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
.++|.|||.|.-|.+.|..|++.|+ +|+++|+++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 4689999999999999999999999 999999864
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.15 Score=51.08 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 79999999999999999999999999999864
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.23 Score=47.10 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=29.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||+|.-|...|..|. .|++|+++++++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 58999999999999999999 899999999864
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.19 Score=47.20 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.3
Q ss_pred CcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+||+|.|| |+.|-..+..|.++|++|+++.|++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP 34 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 47999999 9999999999999999999998864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.21 Score=50.04 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|.|||.|+-|+..|..|++.|++|+++|+++.
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 36899999999999999999999999999999864
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=0.2 Score=49.06 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...+|+|||+|..|..+|..++..|++|+++|+++
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45789999999999999999999999999999864
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=90.24 E-value=0.19 Score=47.10 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999999875
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.21 Score=45.66 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...++|.|||+|.-|...|..|.+.|++|+++++++
T Consensus 17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 345789999999999999999999999999999865
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.26 Score=46.71 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+++|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999864
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=0.2 Score=49.81 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=28.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||.+|+-+|..|++.+ .+|+++++.
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G--------------~~V~vlE~~ 33 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAG--------------KKVLLLEGG 33 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecC
Confidence 7999999999999999999887 899999975
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.21 Score=48.86 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=29.8
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
..+|+|||+|.+|+-+|..|.+.+ .+|+++++.
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G--------------~~V~VlE~~ 76 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAG--------------HDVTILEAN 76 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTS--------------CEEEEECSC
T ss_pred CceEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence 358999999999999999999876 899999976
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=0.21 Score=47.36 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
++|+|||+|..|...|..|+..|+ +|+|+|.+.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 589999999999999999988886 999999865
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=0.19 Score=48.04 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
..++|+|||+|..|.++|..|...++ +++|+|.+.
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 44 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 45789999999999999999988776 899999853
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.38 Score=48.12 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~ 95 (499)
.+++|||||||++|+++|+.|++.| .+|+|||++.
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~ 57 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCC
Confidence 3579999999999999999999999 9999999943
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=0.27 Score=46.24 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=33.9
Q ss_pred CCCCCCCCCCcEEEECCc---hHHHHHHHhccCCCCeEEEEcCCC
Q 010845 54 LGPTKANEKPRVVVLGSG---WAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 54 ~~~~~~~~~~~VvIIGgG---~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
|.++.....+.|+|.||+ ..|.+.|..|++.|++|++++++.
T Consensus 22 m~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~ 66 (296)
T 3k31_A 22 MRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE 66 (296)
T ss_dssp CCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence 444444556789999986 789999999999999999998863
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=0.21 Score=47.62 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=29.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
.+.+|+|||+|..|.+.|..|...+. +|+++|.+.
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~ 41 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 34689999999999999999877664 899999864
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.13 Score=48.28 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999999875
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.22 Score=47.36 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=29.6
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~ 96 (499)
++|+|||+|..|...|..|+.. +++|+++|.+..
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~ 36 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence 3799999999999999998874 789999999753
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.13 Score=48.60 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=30.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||+|--|...|..|.+.|++|++++++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 589999999999999999999899999999874
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.23 Score=44.26 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.7
Q ss_pred cEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 64 RVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+|+|.|| |..|...+..|.+.|++|+++++++
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 6999999 9999999999999999999999864
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.17 Score=51.04 Aligned_cols=31 Identities=39% Similarity=0.520 Sum_probs=28.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce--EEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~--~Vtlv~~~ 276 (499)
+|+|||||.+|+-+|..|++.+ . +|+++|+.
T Consensus 4 dVvVIGaGiaGLsaA~~L~~~G--------------~~~~V~vlEa~ 36 (477)
T 3nks_A 4 TVVVLGGGISGLAASYHLSRAP--------------CPPKVVLVESS 36 (477)
T ss_dssp EEEEECCBHHHHHHHHHHHTSS--------------SCCEEEEECSS
T ss_pred eEEEECCcHHHHHHHHHHHhCC--------------CCCcEEEEeCC
Confidence 8999999999999999999866 6 99999985
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=0.24 Score=50.41 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=27.6
Q ss_pred cEEEeCcChHHHHHHHHHHHH-HHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~-~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||||.+|+-+|..|++. + .+|+++|+.
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G--------------~~V~VlE~~ 43 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDG--------------PSWMIVDSN 43 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCC--------------SCEEEEESS
T ss_pred CEEEECCcHHHHHHHHHHHhhCC--------------CCEEEEECC
Confidence 799999999999999999874 4 789999876
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.23 Score=49.99 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=50.6
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|||||.+|...+..|.+.+ .+|+++... +.+++ .+...+.+|+++.+...
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~g--------------a~V~vi~~~-----~~~~~----~~l~~~~~i~~~~~~~~-- 66 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAG--------------ARLTVNALT-----FIPQF----TVWANEGMLTLVEGPFD-- 66 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--------------BEEEEEESS-----CCHHH----HHHHTTTSCEEEESSCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCc--------------CEEEEEcCC-----CCHHH----HHHHhcCCEEEEECCCC--
Confidence 368999999999999999999877 899999864 22333 23233457877754211
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+.--.+|+||.|||...
T Consensus 67 --------~~~l~~~~lVi~at~~~~ 84 (457)
T 1pjq_A 67 --------ETLLDSCWLAIAATDDDT 84 (457)
T ss_dssp --------GGGGTTCSEEEECCSCHH
T ss_pred --------ccccCCccEEEEcCCCHH
Confidence 111114899999999874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.34 Score=40.61 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=29.8
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
...+|+|+|+|.+|..+|..|...+ .+|+++++.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g--------------~~V~vid~~ 51 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSG--------------HSVVVVDKN 51 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 3468999999999999999998876 789999875
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.55 E-value=0.24 Score=47.27 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+++|.|||+|.-|...|..|++.|++|+++ +++
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~ 51 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP 51 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence 4578999999999999999999999999999 653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=0.23 Score=47.47 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
..+|+|||+|..|.+.|..|...|+ +++|+|.+.
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~ 40 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK 40 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence 4689999999999999999988776 899999853
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.25 Score=47.52 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||+|.-|...|..|.+.|++|+++++++
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999999864
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=0.38 Score=45.92 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...++|+|.|| |+.|...+..|.+.|++|++++++.
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~ 54 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA 54 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34568999998 9999999999999999999999854
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=89.40 E-value=0.84 Score=43.39 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=49.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEe-C--ceEE
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR-G--IVKD 308 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~-~--~v~~ 308 (499)
+|+|||+|..|.-+|..|++.+ .+|+++.+++ . +.+++.|+.+.. . ...
T Consensus 4 kI~IiGaGaiG~~~a~~L~~~g--------------~~V~~~~r~~--------~-----~~i~~~Gl~~~~~~~g~~~- 55 (320)
T 3i83_A 4 NILVIGTGAIGSFYGALLAKTG--------------HCVSVVSRSD--------Y-----ETVKAKGIRIRSATLGDYT- 55 (320)
T ss_dssp EEEEESCCHHHHHHHHHHHHTT--------------CEEEEECSTT--------H-----HHHHHHCEEEEETTTCCEE-
T ss_pred EEEEECcCHHHHHHHHHHHhCC--------------CeEEEEeCCh--------H-----HHHHhCCcEEeecCCCcEE-
Confidence 8999999999999999998866 7999998742 1 345566776654 1 211
Q ss_pred EeCCeEEECCCc-EE-eeeEEEEcCCCCcc
Q 010845 309 VDSQKLILNDGT-EV-PYGLLVWSTGVGPS 336 (499)
Q Consensus 309 v~~~~v~~~~g~-~i-~~D~vi~a~G~~p~ 336 (499)
+.+-.+. .+-+ .. ++|+||+|+-....
T Consensus 56 ~~~~~~~-~~~~~~~~~~DlVilavK~~~~ 84 (320)
T 3i83_A 56 FRPAAVV-RSAAELETKPDCTLLCIKVVEG 84 (320)
T ss_dssp ECCSCEE-SCGGGCSSCCSEEEECCCCCTT
T ss_pred EeeeeeE-CCHHHcCCCCCEEEEecCCCCh
Confidence 1111121 2222 22 68999999876654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.31 E-value=0.31 Score=44.87 Aligned_cols=36 Identities=19% Similarity=0.074 Sum_probs=31.4
Q ss_pred CCCCcEEEECC-ch-HHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGS-GW-AGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGg-G~-aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+.+.|+|.|| |. -|.+.|+.|.+.|++|++++++.
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~ 57 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE 57 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence 45678999999 75 99999999999999999998864
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=89.27 E-value=0.3 Score=47.75 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..++++|+|||..+...|..++..|++|+++|.++.+
T Consensus 203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~ 239 (386)
T 2we8_A 203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF 239 (386)
T ss_dssp CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh
Confidence 3579999999999999999999999999999998764
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=89.26 E-value=0.25 Score=44.65 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=31.2
Q ss_pred CCCCcEEEECC-chHHHHHHHhccCCC-CeEEEEcCCC
Q 010845 60 NEKPRVVVLGS-GWAGCRLMKGIDTSL-YDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGg-G~aGl~aA~~L~~~g-~~V~lie~~~ 95 (499)
+.+++|+|.|| |..|...+..|.+.| ++|+++++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~ 58 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQP 58 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence 34578999995 999999999999999 8999999864
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=89.25 E-value=0.28 Score=46.98 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPR 94 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~ 94 (499)
....+|.|||+|..|.+.|..|...|+ +++|+|.+
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 345799999999999999999887776 89999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 499 | ||||
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 1e-10 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 5e-10 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 9e-10 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 6e-09 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 1e-07 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 0.003 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 5e-07 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 5e-07 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 7e-07 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 1e-05 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 1e-05 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 4e-04 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 5e-04 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 5e-04 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 5e-04 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 6e-04 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 0.001 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 0.003 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 0.003 |
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 58.6 bits (140), Expect = 1e-10
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 7/171 (4%)
Query: 234 VVVGGGPTGVEFSGELSDFIMR-DVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
VV+G G V F EL + + + + + + +++R
Sbjct: 7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66
Query: 293 QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG--- 349
+ V D + + L+DG +PYG LV +TG P ++ + L ++ G
Sbjct: 67 APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC 126
Query: 350 -GRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGKYL 398
I +D + R + DV+A+GD +G+ A+ QG +
Sbjct: 127 DDGIFVDAYGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAV 176
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (133), Expect = 5e-10
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 34/151 (22%)
Query: 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249
VK T R++ + + + E + ++GGG G E + L
Sbjct: 14 VKSRTTLFRKIGDFRSLEKIS--------------REVKSI---TIIGGGFLGSELACAL 56
Query: 250 SDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRL-----V 302
V + + + L ++ ++ + GV++ V
Sbjct: 57 GRKAR----------ALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV 106
Query: 303 RGIVKDVDSQKLILNDGTEVPYGLLVWSTGV 333
+ + + L DG +V +V + G+
Sbjct: 107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 55.5 bits (132), Expect = 9e-10
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 8/169 (4%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG GP G E + +LS V + + + +
Sbjct: 4 VIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYR 63
Query: 294 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIG 353
+RL +K+++ + EVPY LV +TG L + + G I
Sbjct: 64 KRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHT--GRGIL 121
Query: 354 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402
ID+ R +DV+A+GDC+ ++ A+ A Q + L +L
Sbjct: 122 IDDNFRTS-AKDVYAIGDCAE-----YSGIIAGTAKAAMEQARVLADIL 164
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 53.6 bits (127), Expect = 6e-09
Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 13/175 (7%)
Query: 234 VVVGGGPTGVEFSGELSDF-----IMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH 288
V+VG G GVE + L I A + +
Sbjct: 7 VIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTP 66
Query: 289 YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 348
A + + + + D Q++IL+DG + Y LV +TG P + +L +
Sbjct: 67 DAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLI--PNCELASAA 124
Query: 349 G----GRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQGKYL 398
G I I+E ++ S + AVGDC + + + V A Q + +
Sbjct: 125 GLQVDNGIVINEHMQ-TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKI 178
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 49.8 bits (117), Expect = 1e-07
Identities = 32/187 (17%), Positives = 50/187 (26%), Gaps = 40/187 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-------------ILS 280
VVVGGG G + + + ++ VTLIE N
Sbjct: 6 VVVGGGTGGATAAKYI--------KLADPSIE----VTLIEPNTDYYTCYLSNEVIGGDR 53
Query: 281 SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS---- 336
+ Y + V D D + + G E Y V + G+
Sbjct: 54 KLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKI 113
Query: 337 -----TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA 391
+ + L G + + + +GD S +P A
Sbjct: 114 EQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANP------MPKSGYSA 167
Query: 392 ERQGKYL 398
QGK
Sbjct: 168 NSQGKVA 174
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 36.7 bits (83), Expect = 0.003
Identities = 26/128 (20%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 63 PRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+VVV+G G G K I + V + P L G +
Sbjct: 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLE-----S 57
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
+ R G GID D +V + YD+ V+A G
Sbjct: 58 IKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAE-----------FGYDRCVVAPGI 106
Query: 181 EASTFGIH 188
E I
Sbjct: 107 ELIYDKIE 114
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 46.6 bits (110), Expect = 5e-07
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 33/144 (22%)
Query: 191 KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELS 250
KE LR + A I+ + +++GGG G+E +
Sbjct: 10 KEYLLTLRTIFDADRIKESI-----------------ENSGEAIIIGGGFIGLELA---- 48
Query: 251 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309
+ + HV LI + D+ L + L ++GV+ + +
Sbjct: 49 ----------GNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEA 98
Query: 310 DSQKLILNDGTEVPYGLLVWSTGV 333
+ + +L + + + + + G+
Sbjct: 99 NEEG-VLTNSGFIEGKVKICAIGI 121
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 47.9 bits (112), Expect = 5e-07
Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 44/196 (22%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------- 280
+V+G G E EL + + E + +S
Sbjct: 4 IVLGSSHGGYEAVEEL--------LNLHPDA----EIQWYEKGDFISFLSAGMQLYLEGK 51
Query: 281 -SFDDRLRHYATTQLSKSGVRL--------VRGIVKDVDSQKLILNDGTEVPYGLLVWST 331
+ +R+ ++ GV + ++ V + L+ + Y L+ S
Sbjct: 52 VKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISP 111
Query: 332 GVGPST--------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKT 382
G P L P G I DE+ S DVFAVGD
Sbjct: 112 GAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEY-MRTSEPDVFAVGDATLIKYNPADTE 170
Query: 383 VLPALAQVAERQGKYL 398
V ALA A +QG++
Sbjct: 171 VNIALATNARKQGRFA 186
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 45.9 bits (108), Expect = 7e-07
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 34/149 (22%)
Query: 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246
+ G LR + A+ I+ L +SRL ++VGGG G+E +
Sbjct: 4 LQGATMPVHTLRTLEDARRIQAGL--------------RPQSRL---LIVGGGVIGLELA 46
Query: 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG 304
+ +HV+L+E + + L + + GV L
Sbjct: 47 --------------ATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFE 92
Query: 305 I-VKDVDSQKLILNDGTEVPYGLLVWSTG 332
V ++L+DGT + ++V G
Sbjct: 93 RSVTGSVDGVVLLDDGTRIAADMVVVGIG 121
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+ VGGG +EF+G + + R + ++ D I ++LR
Sbjct: 20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQ--LTEQLRANGI 77
Query: 292 TQLSKSGVRLVRGIVKDVDSQK-LILNDGTEVPYGLLVWSTG 332
+ + K+ D + ++ G E Y +++ + G
Sbjct: 78 NVRTHEN---PAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 44.1 bits (103), Expect = 1e-05
Identities = 36/213 (16%), Positives = 66/213 (30%), Gaps = 58/213 (27%)
Query: 234 VVVGGGPTGVEFSGELSD----------------------------------FIMRDVRQ 259
+VVG GP G + + + +
Sbjct: 7 LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66
Query: 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG---IVKDVDSQKLIL 316
+ + + + E +S +L L + V +V+G V + +
Sbjct: 67 EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126
Query: 317 NDGTEVPYGLLVWSTGVGPSTLV-----------KSLDLPKSPGGRIGIDEWLRVPSVQD 365
+ + + +TG P LV + + + + G I +D+ R SV +
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPN 185
Query: 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
+FA+GD PALA A +GK
Sbjct: 186 IFAIGDIVPG---------PALAHKASYEGKVA 209
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (87), Expect = 4e-04
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 19/107 (17%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
VVG G GVE G + + + + L SFD +
Sbjct: 23 RVAVVGAGYIGVELGGVI-NGLGAKTHLFEMF------------DAPLPSFDPMISETLV 69
Query: 292 TQLSKSGVRL-----VRGIVKDVDSQ-KLILNDGTEVPYGLLVWSTG 332
++ G +L + +VK+ D L L DG L+W+ G
Sbjct: 70 EVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397
G + +D R ++A GDC+G L LA VA QG+
Sbjct: 180 RGNYLTVDRVSRT-LATGIYAAGDCTGLLP---------LASVAAMQGRI 219
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 24/194 (12%), Positives = 55/194 (28%), Gaps = 29/194 (14%)
Query: 234 VVVGGGPTGVEFSGELSD--------FIMRDVRQRYSHVK-----------------DYI 268
+++GGG + + + D Y +
Sbjct: 8 LLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFK 67
Query: 269 HVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG---IVKDVDSQKLILNDGTEVPYG 325
E + + + GV ++ G + DV + LNDG+++ Y
Sbjct: 68 QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYE 127
Query: 326 LLVWSTG-VGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL 384
+ +TG P+ + + G + + +++ GD + + +
Sbjct: 128 KCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRR 187
Query: 385 PALAQVAERQGKYL 398
A G+
Sbjct: 188 VEHHDHAVVSGRLA 201
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 38.0 bits (87), Expect = 5e-04
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 21/147 (14%)
Query: 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 245
G G N +LR + A+ IRR+L +RL VV+GGG G+E
Sbjct: 8 GAVGKANNFRYLRTLEDAECIRRQL--------------IADNRL---VVIGGGYIGLEV 50
Query: 246 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
+ M + + + ++ R + + V
Sbjct: 51 AATAIKANMHVTLLDTAARVLERVTA----PPVSAFYEHLHREAGVDIRTGTQVCGFEMS 106
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTG 332
++ DGT +P L++ G
Sbjct: 107 TDQQKVTAVLCEDGTRLPADLVIAGIG 133
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
G + ++E+L+ SV +V+AVGD G P A + G Y
Sbjct: 211 GEVLVNEYLQT-SVPNVYAVGDLIGG---------PMEMFKARKSGCYA 249
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 38.4 bits (88), Expect = 0.001
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
G I +D+ +R +V ++A+GD G P LA A +G
Sbjct: 179 GFIEVDKQMRT-NVPHIYAIGDIVGQ---------PMLAHKAVHEGHVA 217
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.003
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 284 DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343
+ +R +A V G + P+ + + + + L
Sbjct: 107 EIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLS----LNKLG 162
Query: 344 LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
+ G I +DE+ +V+ ++AVGD G L VA G+ L
Sbjct: 163 IQTDDKGHIIVDEFQNT-NVKGIYAVGDVCGK---------ALLTPVAIAAGRKL 207
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.7 bits (84), Expect = 0.003
Identities = 39/213 (18%), Positives = 61/213 (28%), Gaps = 58/213 (27%)
Query: 234 VVVGGGPTGVEFSGELSDF----------------------IMRDVRQRYSHVKDY---- 267
V++GGGP G + + + I SH+
Sbjct: 7 VIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHS 66
Query: 268 ----------IHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR----GIVKDVDSQK 313
+ + L L K+ V V+ + S
Sbjct: 67 FANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVD 126
Query: 314 LILNDGTEVPYGLLVWSTG---VGPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQD 365
I + T V ++ +TG G + L+L K GRI ++E +V
Sbjct: 127 TIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSG 185
Query: 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 398
V+A+GD P LA AE G
Sbjct: 186 VYAIGDVIP---------GPMLAHKAEEDGVAC 209
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.87 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.86 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.86 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.85 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.85 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.8 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.79 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.76 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.72 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.72 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.71 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.7 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.69 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.69 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.68 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.68 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.67 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.66 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.66 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.66 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.65 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.63 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.61 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.6 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.6 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.59 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.59 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.58 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.57 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.57 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.57 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.57 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.57 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.54 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.52 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.5 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.49 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.47 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.47 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.45 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.38 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.34 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.34 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.27 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.24 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.2 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.2 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.09 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.08 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.05 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.05 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.03 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.02 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.02 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.02 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.01 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.0 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.0 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.98 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.97 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.96 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.94 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.94 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.93 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.92 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.9 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.9 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.88 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.88 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.87 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.87 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.85 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.83 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.82 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.82 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.8 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.8 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.78 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.76 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.76 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.74 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.73 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.72 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.72 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.72 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.72 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.71 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.71 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.7 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.7 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.68 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.68 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.65 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.63 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.63 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.63 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.62 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.56 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.55 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.54 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.53 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.51 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.47 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.42 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.4 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.4 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.4 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.38 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.38 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.38 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.36 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.36 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.35 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.34 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.34 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.33 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.33 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.33 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.28 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.27 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.27 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.27 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.25 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.24 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.18 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.15 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.12 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.08 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.04 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.03 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.02 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.98 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.95 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 97.94 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 97.93 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.92 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.9 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 97.88 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.82 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 97.82 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.79 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.75 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.74 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 97.73 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.65 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.65 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 97.64 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 97.64 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.62 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.58 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.55 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.54 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.52 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.5 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.49 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.39 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.37 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.36 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.34 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.33 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.28 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.25 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.25 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.23 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.22 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.15 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.12 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.1 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.08 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.04 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.03 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 96.92 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 96.8 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 96.79 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 96.75 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 96.72 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.59 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.42 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.4 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.38 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.3 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.28 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.14 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 95.85 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.83 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.79 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 95.76 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.54 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 95.52 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.48 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 95.37 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.35 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.35 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.1 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.08 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.98 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.98 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.95 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 94.91 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.8 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.77 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.71 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.68 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.57 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.51 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.42 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 94.4 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 94.33 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.3 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.28 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.19 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 93.93 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 93.88 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.85 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.74 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.71 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.69 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.68 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.61 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.48 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.31 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.15 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.97 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 92.77 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.73 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.67 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.62 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 92.53 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 92.41 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 92.24 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.24 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.23 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.16 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 92.16 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 92.12 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.11 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 92.07 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.06 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 91.95 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 91.94 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.89 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.86 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 91.84 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 91.73 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 91.69 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 91.63 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.55 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 91.54 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 91.1 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 91.08 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.86 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.61 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 90.55 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 90.5 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.45 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.45 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 90.1 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 89.87 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 89.66 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.63 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 89.55 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 89.38 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 89.3 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 89.28 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 89.26 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 88.87 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 88.82 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 88.74 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 88.66 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 88.4 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 88.31 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 88.29 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 88.15 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 88.09 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 88.05 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 88.05 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 87.71 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.16 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.1 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 86.99 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 86.82 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.77 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 86.28 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 86.26 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 86.05 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 85.75 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 84.99 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 84.98 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 84.3 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 83.79 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 83.63 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 83.44 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.97 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 82.83 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 82.81 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 82.77 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 82.73 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 82.43 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 82.04 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 81.98 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 81.83 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 81.81 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 81.63 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 81.27 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 81.22 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 81.17 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 81.09 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 81.07 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.79 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 80.68 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 80.62 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 80.36 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 80.3 |
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.87 E-value=1e-21 Score=171.22 Aligned_cols=149 Identities=30% Similarity=0.495 Sum_probs=120.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHH-------------HHHHHHHHhCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLR-------------HYATTQLSKSG 298 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~-------------~~~~~~l~~~g 298 (499)
||+|||||++|+|+|..|++ + .+||++++.+.....++.+. ....+.+++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~--------------~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-T--------------YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRG 66 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-T--------------SEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHT
T ss_pred eEEEECCcHHHHHHHHHHHc-C--------------CCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhcc
Confidence 79999999999999998864 2 78999987643222222222 22245677889
Q ss_pred CEEEeC-ceEEEeCC-eEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccc
Q 010845 299 VRLVRG-IVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 376 (499)
Q Consensus 299 V~v~~~-~v~~v~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~ 376 (499)
++++.+ .++.++.+ .+.+.+++++++|.+|||+|..|+++....+++.+. .|.||+++|+ +.|+|||+|||+..+
T Consensus 67 v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~~--~i~v~~~~~t-~~~~i~aiGD~~~~~ 143 (167)
T d1xhca1 67 IEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGR--GILIDDNFRT-SAKDVYAIGDCAEYS 143 (167)
T ss_dssp EEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECCHHHHHTTCCBSS--SEECCTTSBC-SSTTEEECGGGEEBT
T ss_pred ceeeeeccccccccccccccccccccccceeEEEEEecCCchhhhcCceeCC--ceeeccccEe-cCCCeEEeeecccCC
Confidence 999998 89999765 577778889999999999999988888888887753 4999999999 899999999999743
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 377 ESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 377 ~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
...+..++.|++||+.+|+||.
T Consensus 144 -----~~~~~~~~~a~~~a~~~a~~i~ 165 (167)
T d1xhca1 144 -----GIIAGTAKAAMEQARVLADILK 165 (167)
T ss_dssp -----TBCCCSHHHHHHHHHHHHHHHT
T ss_pred -----CeEEChHHHHHHHHHHHHHHcC
Confidence 3457789999999999999974
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.86 E-value=6.2e-22 Score=175.39 Aligned_cols=157 Identities=24% Similarity=0.292 Sum_probs=116.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHH----------HHHHhCCCEE
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT----------TQLSKSGVRL 301 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~----------~~l~~~gV~v 301 (499)
+|+|||||++|+|+|..|.+.+. +..++++......+...+.+...+. +.....+|++
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g~------------~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 72 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAGY------------QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEW 72 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC------------CSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEE
T ss_pred CEEEECccHHHHHHHHHHHhcCC------------ceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEE
Confidence 79999999999999999988761 1445555443333222222222221 1234668999
Q ss_pred EeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcchh------cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccc
Q 010845 302 VRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPSTL------VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (499)
Q Consensus 302 ~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~~~------~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~ 372 (499)
+.+ ++++++.+ .+.+++|+++++|.+|||+|..|+.. ....++.. ++.|.||+++|| +.|+|||+|||
T Consensus 73 ~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~t-s~~~IyA~GD~ 149 (183)
T d1d7ya1 73 LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGRT-TCPDVYALGDV 149 (183)
T ss_dssp EETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCBC-SSTTEEECGGG
T ss_pred EEeccccccccccceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEeccceec-cccccchhhhh
Confidence 999 89999765 78899999999999999999999742 33344543 456999999998 99999999999
Q ss_pred cccccCCCCCC-CCchHHHHHHHHHHHHHHHH
Q 010845 373 SGYLESTGKTV-LPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 373 a~~~~~~g~~~-~p~~~~~A~~~g~~aa~~i~ 403 (499)
+..+++.++.. ..++++.|.+||+.+|+||.
T Consensus 150 a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil 181 (183)
T d1d7ya1 150 TRQRNPLSGRFERIETWSNAQNQGIAVARHLV 181 (183)
T ss_dssp EEEECTTTCSEEECCCHHHHHHHHHHHHHHHH
T ss_pred hccceeeCCceechhHHHHHHHHHHHHHHHHc
Confidence 98876544322 34679999999999999986
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.3e-22 Score=181.37 Aligned_cols=159 Identities=17% Similarity=0.243 Sum_probs=125.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHH------------------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL------------------------ 286 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~------------------------ 286 (499)
.+++|||||++|+++|..|.+.+ ++.+|+++.+...+|...+.+
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~------------~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~ 72 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARD------------PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGK 72 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHS------------TTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSC
T ss_pred CCEEEECCcHHHHHHHHHHHhcC------------CCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccc
Confidence 47999999999999999998764 237899998754333211111
Q ss_pred -------------HHHHHHHHHhCCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc--hhcccCCCCCC-
Q 010845 287 -------------RHYATTQLSKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS--TLVKSLDLPKS- 347 (499)
Q Consensus 287 -------------~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~--~~~~~~~l~~~- 347 (499)
.......+++.||+++++ +|++|+. +.|+++||++++||.+|||+|..|+ .+....+++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~ 152 (213)
T d1m6ia1 73 ERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDS 152 (213)
T ss_dssp EEESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCT
T ss_pred hhhhhcCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhh
Confidence 111123356789999999 8999975 4799999999999999999998876 35566677774
Q ss_pred CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
..|.|.||++||+ + |+|||+|||+.+++...+...+.+++.|.+||+.+|+||.
T Consensus 153 ~~~~i~vd~~l~~-~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~ 206 (213)
T d1m6ia1 153 DFGGFRVNAELQA-R-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMT 206 (213)
T ss_dssp TTCSEECCTTCEE-E-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHhcCc-C-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhc
Confidence 4578999999998 5 9999999999988765555678899999999999999986
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.85 E-value=4.2e-21 Score=172.25 Aligned_cols=159 Identities=25% Similarity=0.352 Sum_probs=120.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHH--------------HHHHHHHHHHhC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR--------------LRHYATTQLSKS 297 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~--------------~~~~~~~~l~~~ 297 (499)
||+|||||++|+|+|.+|.+++ ++.+|++++++..++..+.. +.....+.|+++
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~------------~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 69 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLH------------PDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESR 69 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHC------------TTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHT
T ss_pred EEEEECCcHHHHHHHHHHHhcC------------CCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHC
Confidence 7999999999999999998765 23799999987433322222 222235678899
Q ss_pred CCEEEeC-ceEEEeCC--eEEE---CCCc--EEeeeEEEEcCCCCcch--------hcccCCCCCCCCCceeeCCCCCCC
Q 010845 298 GVRLVRG-IVKDVDSQ--KLIL---NDGT--EVPYGLLVWSTGVGPST--------LVKSLDLPKSPGGRIGIDEWLRVP 361 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~--~v~~---~~g~--~i~~D~vi~a~G~~p~~--------~~~~~~l~~~~~G~i~vd~~l~~~ 361 (499)
||+++++ +|.+++.+ .|++ .+|+ ++++|.+|+|+|..|+. .....+++++++|+|.||+++||
T Consensus 70 gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T- 148 (198)
T d1nhpa1 70 GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRT- 148 (198)
T ss_dssp TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBC-
T ss_pred CcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccc-
Confidence 9999999 89999864 5554 3443 58899999999987642 11223567788999999999999
Q ss_pred CCCCeEEeccccccccC-CCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 362 SVQDVFAVGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 362 ~~~~Ifa~GD~a~~~~~-~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+.|+|||+|||+.++.. .+.......++.|.+||+.+|+||.
T Consensus 149 ~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~ 191 (198)
T d1nhpa1 149 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE 191 (198)
T ss_dssp SSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred cccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhC
Confidence 99999999999976542 2333445679999999999999873
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.85 E-value=8.8e-21 Score=154.80 Aligned_cols=117 Identities=24% Similarity=0.375 Sum_probs=107.0
Q ss_pred CCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010845 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (499)
Q Consensus 185 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~ 264 (499)
|++||.+..++++++++|+.++++.+ +..++++|||||++|+|+|.+|++++
T Consensus 2 P~ipG~~~~v~~lrtl~Da~~l~~~~-----------------~~~~~vvIIGgG~iG~E~A~~l~~~g----------- 53 (121)
T d1d7ya2 2 PTLQGATMPVHTLRTLEDARRIQAGL-----------------RPQSRLLIVGGGVIGLELAATARTAG----------- 53 (121)
T ss_dssp GGGTTCSSCEEECCSHHHHHHHHHHC-----------------CTTCEEEEECCSHHHHHHHHHHHHTT-----------
T ss_pred ccCCCCCCCEEEeCCHHHHHHHHHhh-----------------hcCCeEEEECcchhHHHHHHHhhccc-----------
Confidence 78999877789999999999988775 23469999999999999999999887
Q ss_pred CCceEEEEEeCC-CcCC-CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCC
Q 010845 265 KDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 265 ~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G 332 (499)
.+||++++. ++|+ .+++++.+.+.+.|+++||+++++ +|+++.++.++++||++++||+||+|+|
T Consensus 54 ---~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 54 ---VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp ---CEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred ---ceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence 999999997 6786 679999999999999999999999 8999999999999999999999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=2e-19 Score=147.37 Aligned_cols=120 Identities=21% Similarity=0.385 Sum_probs=105.5
Q ss_pred CccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHh
Q 010845 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (499)
Q Consensus 181 ~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~ 260 (499)
+|+.|+|||. +++++++++.++.++.+.+. ..++++|||||++|+|+|..|++++
T Consensus 1 R~r~p~ipG~-e~~~t~~~~~d~~~l~~~~~-----------------~~~~vvIiGgG~iG~E~A~~l~~~g------- 55 (122)
T d1xhca2 1 RAREPQIKGK-EYLLTLRTIFDADRIKESIE-----------------NSGEAIIIGGGFIGLELAGNLAEAG------- 55 (122)
T ss_dssp EECCCCSBTG-GGEECCCSHHHHHHHHHHHH-----------------HHSEEEEEECSHHHHHHHHHHHHTT-------
T ss_pred CCCCcCCCCc-cceEccCCHHHHHHHHHHhh-----------------cCCcEEEECCcHHHHHHHHHhhccc-------
Confidence 3678999997 67899999999999887763 3369999999999999999999987
Q ss_pred cCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCC
Q 010845 261 YSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 261 ~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.+||++++.+.+..+++++.+.+.+.|+++||+++++ ++.+++++++. .+++++++|+||||+|.
T Consensus 56 -------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v~-~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 56 -------YHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGVL-TNSGFIEGKVKICAIGI 121 (122)
T ss_dssp -------CEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEEE-ETTEEEECSCEEEECCE
T ss_pred -------ceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEE-eCCCEEECCEEEEEEEe
Confidence 9999999985333599999999999999999999999 89999988874 57789999999999995
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.79 E-value=2.1e-19 Score=159.02 Aligned_cols=158 Identities=24% Similarity=0.327 Sum_probs=114.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC--------------CHHHHHHHHHHHHh
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF--------------DDRLRHYATTQLSK 296 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~--------------~~~~~~~~~~~l~~ 296 (499)
++|+|||||++|+|+|.+|++++. +..|+++.+....+.. ..............
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~------------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGW------------EGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAA 71 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------------CSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHcCC------------ceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcc
Confidence 489999999999999999998771 1344444443322211 11122222344566
Q ss_pred CCCEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc----hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEe
Q 010845 297 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS----TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~----~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~ 369 (499)
.++++..+ .+..++.+ .+...++.++++|.++|++|.+|+ .+.+..++.. +|.+.||++||| +.|+|||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~t-s~~~vya~ 148 (185)
T d1q1ra1 72 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQT-SDPLIMAV 148 (185)
T ss_dssp TTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBC-SSTTEEEC
T ss_pred cceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCcccc-chhhhhcc
Confidence 77778777 67777664 688889999999999999998875 2445556544 567999999999 99999999
Q ss_pred ccccccccCCC-CCCCCchHHHHHHHHHHHHHHHH
Q 010845 370 GDCSGYLESTG-KTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 370 GD~a~~~~~~g-~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|||+..+...+ ....+++++.|.+||+.||+||.
T Consensus 149 GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~ 183 (185)
T d1q1ra1 149 GDCARFHSQLYDRWVRIESVPNALEQARKIAAILC 183 (185)
T ss_dssp GGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred hhhhccccccCCcccchhhHHHHHHHHHHHHHHcc
Confidence 99998765433 22345689999999999999984
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.76 E-value=4.8e-18 Score=149.64 Aligned_cols=159 Identities=22% Similarity=0.251 Sum_probs=116.1
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCCCCHHH----------HHHHHHHHHhCC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRL----------RHYATTQLSKSG 298 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~~~~~~----------~~~~~~~l~~~g 298 (499)
+|||+|||||++|+|+|..|.+.+ ++.+||++++.+ ++....... .......+...+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~------------~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLAD------------PSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHG 69 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC------------TTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTT
T ss_pred CCcEEEECccHHHHHHHHHHHHcC------------CCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccc
Confidence 469999999999999999998765 237999999873 333221111 111123456678
Q ss_pred CEEEeCceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcch-hccc--------CCCCCCCCCceeeC-CCCCCCCCCCe
Q 010845 299 VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST-LVKS--------LDLPKSPGGRIGID-EWLRVPSVQDV 366 (499)
Q Consensus 299 V~v~~~~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~--------~~l~~~~~G~i~vd-~~l~~~~~~~I 366 (499)
+++..+.+..++.. .+.+.+++++++|.+|||+|.+|+. ++.. .++..+. +++.++ +.++..+.++|
T Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 148 (186)
T d1fcda1 70 IQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDA-GWCPVDIKTFESSIHKGI 148 (186)
T ss_dssp EEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTT-SSEEBCSSSCBBSSSTTE
T ss_pred eeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCccccc-ccccceeeeeecccccCc
Confidence 88887766665543 6778899999999999999999873 2222 1344444 445454 55776799999
Q ss_pred EEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 367 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 367 fa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|++||++.. .+.|++++.|.+||+.+|+||...+.
T Consensus 149 ~~iGd~~~~------~~~p~~~~~A~~q~~~~A~ni~~~~~ 183 (186)
T d1fcda1 149 HVIGDASIA------NPMPKSGYSANSQGKVAAAAVVVLLK 183 (186)
T ss_dssp EECTTSEEC------TTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEecccccc------CCCCchHhHHHHHHHHHHHHHHHHhc
Confidence 999999952 45689999999999999999999886
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.72 E-value=3e-17 Score=134.23 Aligned_cols=116 Identities=20% Similarity=0.338 Sum_probs=101.0
Q ss_pred CCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010845 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 187 ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
|||.+ ++++++++++++.++++.+. ....++|+|||||++|+|+|..+++++
T Consensus 1 IPG~d~~~v~~~~~~~da~~i~~~~~---------------~~~~k~vvViGgG~iG~E~A~~l~~~g------------ 53 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKLKQKTV---------------DPEVNNVVVIGSGYIGIEAAEAFAKAG------------ 53 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHHHHHHT---------------CTTCCEEEEECCSHHHHHHHHHHHHTT------------
T ss_pred CcCCCCCCeEEeCCHHHHHHHHHHhh---------------ccCCCEEEEECChHHHHHHHHHhhccc------------
Confidence 68875 78899999999999987752 123469999999999999999999987
Q ss_pred CceEEEEEeCC-CcCC-CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---eEEECCCcEEeeeEEEEcC
Q 010845 266 DYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWST 331 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---~v~~~~g~~i~~D~vi~a~ 331 (499)
.+||++++. ++++ .+++++.+.+.+.|+++||+++++ .+++++.+ ...++||++++||+||+|.
T Consensus 54 --~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 54 --KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp --CEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred --eEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 899999997 6776 579999999999999999999999 89999876 3557899999999999984
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.72 E-value=2.8e-17 Score=153.58 Aligned_cols=147 Identities=24% Similarity=0.328 Sum_probs=109.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------------------------------ 281 (499)
.++|||||+.|+++|..++.++ .+|++++..+.+..
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G--------------~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~ 109 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMG--------------GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQY 109 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhc
Confidence 6999999999999999999988 89999998642210
Q ss_pred ---------CCH-HHHH------------HHHHHHHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcch-
Q 010845 282 ---------FDD-RLRH------------YATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 282 ---------~~~-~~~~------------~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~- 337 (499)
... ...+ ...+.+...++..+.+ ...-++...+.. +|++++||.||+|+|.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~-~g~~i~ad~viiAtG~~P~~~ 188 (261)
T d1mo9a1 110 WFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA-AGKVFKAKNLILAVGAGPGTL 188 (261)
T ss_dssp TCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE-TTEEEEBSCEEECCCEECCCC
T ss_pred cccccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeeccccc-ccceEeeeeeeeccCCCCCcC
Confidence 000 0000 0112233444444433 444444455554 67899999999999999972
Q ss_pred ----------hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 338 ----------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 338 ----------~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+.+.+|++++++|+|.||++||| +.|+|||+|||+. + |.+++.|..||++||.||.
T Consensus 189 ~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~T-s~~~IyA~GDv~~------~---~~l~~~A~~~G~~aa~~i~ 254 (261)
T d1mo9a1 189 DVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIG------G---PMEMFKARKSGCYAARNVM 254 (261)
T ss_dssp CSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGC------S---SCSHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccceeeeeccCCEEEeCCCccc-CCCCEEEEEEeCC------C---cccHHHHHHHHHHHHHHHC
Confidence 12345899999999999999999 9999999999984 2 7889999999999999984
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3.6e-17 Score=132.28 Aligned_cols=88 Identities=30% Similarity=0.428 Sum_probs=81.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..+++++ .+||++++. +++|.+++++.+++.+.|+++||+++++ .|++
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G--------------~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~ 87 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLG--------------AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKA 87 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEE
T ss_pred CEEEEECCChhhHHHHHHhhccc--------------cEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEE
Confidence 49999999999999999999988 899999997 7999999999999999999999999999 8988
Q ss_pred EeCC-----eEEECCCcEEeeeEEEEcCC
Q 010845 309 VDSQ-----KLILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 309 v~~~-----~v~~~~g~~i~~D~vi~a~G 332 (499)
+..+ .+.+++|+++++|.||||+|
T Consensus 88 i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 88 VVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 8653 47789999999999999998
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.70 E-value=1.5e-16 Score=144.45 Aligned_cols=148 Identities=27% Similarity=0.363 Sum_probs=113.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC-----------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF----------------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~----------------------------- 282 (499)
.|+|||||+.|+++|..+++.+ .+|+++++...+...
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G--------------~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 70 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLG--------------FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANH 70 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhc
Confidence 6999999999999999999988 899999976322110
Q ss_pred ---------C------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE----CCCcEEeeeEEEEcCCC----
Q 010845 283 ---------D------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL----NDGTEVPYGLLVWSTGV---- 333 (499)
Q Consensus 283 ---------~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~----~~g~~i~~D~vi~a~G~---- 333 (499)
. ..+.......++..+|+++.....-..+..... .++.++.+|.||+|||.
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~g 150 (221)
T d1dxla1 71 GVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKG 150 (221)
T ss_dssp TEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECC
T ss_pred CeecccceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccC
Confidence 0 012233445566778998877554455443332 23467899999999995
Q ss_pred -Ccch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 334 -GPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 334 -~p~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
.|+. .++++++++|++|+|.||+++|| +.|+|||+|||+. + |.+++.|..+|+.+|++|.
T Consensus 151 r~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T-~v~gi~A~GDv~~------g---~~l~~~A~~~g~~aa~~i~ 214 (221)
T d1dxla1 151 RTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIP------G---PMLAHKAEEDGVACVEYLA 214 (221)
T ss_dssp EEECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSS------S---CCCHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCChHhcCceEcCCCcEEeCCCccc-CCCCEEEEeccCC------C---cccHHHHHHHHHHHHHHHc
Confidence 4552 25677899999999999999999 9999999999984 2 7789999999999999884
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=4.8e-17 Score=134.80 Aligned_cols=110 Identities=27% Similarity=0.434 Sum_probs=96.1
Q ss_pred ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEE
Q 010845 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (499)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vt 271 (499)
++++++++++|+.++++.+ ...++++|||||++|+|+|..|++.+ .+||
T Consensus 14 ~~v~~lr~~~d~~~l~~~~-----------------~~~k~v~VIGgG~iG~E~A~~l~~~g--------------~~Vt 62 (133)
T d1q1ra2 14 NNFRYLRTLEDAECIRRQL-----------------IADNRLVVIGGGYIGLEVAATAIKAN--------------MHVT 62 (133)
T ss_dssp TTEEESSSHHHHHHHHHTC-----------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEE
T ss_pred CCeeEeCCHHHHHHHHHhh-----------------ccCCEEEEECCchHHHHHHHHHHhhC--------------ccee
Confidence 4677899999999887654 23469999999999999999999987 9999
Q ss_pred EEeCC-CcCC-CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-------eEEECCCcEEeeeEEEEcCC
Q 010845 272 LIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 272 lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-------~v~~~~g~~i~~D~vi~a~G 332 (499)
++++. ++++ .+++.+.+.+++.++++||+++++ .|++++.. .+.++||+++++|+||+|+|
T Consensus 63 vie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 63 LLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred eeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 99997 6776 579999999999999999999999 89988642 47789999999999999998
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=2.6e-16 Score=144.23 Aligned_cols=151 Identities=27% Similarity=0.393 Sum_probs=109.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---------------------------CCC--
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------------------------SSF-- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---------------------------~~~-- 282 (499)
+|+||||||.|+.+|...++++.+ ..+|+++++..+- +.+
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~-----------~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~ 71 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPE-----------TTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGF 71 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTT-----------TEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-----------CCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCC
Confidence 799999999999999888776521 2678888864321 000
Q ss_pred ---------C-H-----------HHHHHHHHHHHhCCCEEEeCceEEEeC------C--eEEECCCc--EEeeeEEEEcC
Q 010845 283 ---------D-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDS------Q--KLILNDGT--EVPYGLLVWST 331 (499)
Q Consensus 283 ---------~-~-----------~~~~~~~~~l~~~gV~v~~~~v~~v~~------~--~v~~~~g~--~i~~D~vi~a~ 331 (499)
+ + .....+.+.++..||+++.++-.-+.. . .+...||+ ++++|.+|+++
T Consensus 72 ~i~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAt 151 (233)
T d1xdia1 72 HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVAT 151 (233)
T ss_dssp C------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECC
T ss_pred cccccCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeec
Confidence 0 0 111224556778899999873222222 1 23345553 69999999999
Q ss_pred CCCcchh------------cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHH
Q 010845 332 GVGPSTL------------VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 399 (499)
Q Consensus 332 G~~p~~~------------~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa 399 (499)
|..|... ++..+++++++|+|.||++||| +.|+|||+|||+. . +++++.|..+|++||
T Consensus 152 G~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-~~~gIyA~GDv~~------~---~~l~~~A~~~g~~aa 221 (233)
T d1xdia1 152 GASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTG------L---LPLASVAAMQGRIAM 221 (233)
T ss_dssp CEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBC-SSTTEEECSGGGT------S---CSCHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhhhcccCCCcCCcCCCccc-CCCCEEEEEEeCC------C---chhHHHHHHHHHHHH
Confidence 9988521 2344677889999999999999 9999999999984 2 678889999999999
Q ss_pred HHHH
Q 010845 400 SLLN 403 (499)
Q Consensus 400 ~~i~ 403 (499)
.|+.
T Consensus 222 ~~~~ 225 (233)
T d1xdia1 222 YHAL 225 (233)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9985
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.68 E-value=2.8e-16 Score=142.82 Aligned_cols=148 Identities=26% Similarity=0.390 Sum_probs=110.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
.|+|||||+.|+++|..+++.+ .+|+++++..+..
T Consensus 5 DviVIG~GpaGl~aA~~aar~G--------------~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLG--------------QKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGI 70 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTE
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcc
Confidence 6999999999999999999987 8999998753210
Q ss_pred -----CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCe--EEEC-CCcEEeeeEEEEcC--------C
Q 010845 281 -----SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQK--LILN-DGTEVPYGLLVWST--------G 332 (499)
Q Consensus 281 -----~~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~--v~~~-~g~~i~~D~vi~a~--------G 332 (499)
.+. ..+.......++..||+++.++-.-..... +... ++.++.+|.+|+++ |
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G 150 (223)
T d1ebda1 71 KAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVG 150 (223)
T ss_dssp ECCSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSC
T ss_pred cchhheeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCcccccc
Confidence 000 012233344567789999887432233332 2222 34578899999985 6
Q ss_pred CCcch--h-cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 333 VGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 333 ~~p~~--~-~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
..|++ + ++++|+++|++|+|.||+++|| +.|+|||+|||+. + +.+++.|..||+.||++|.
T Consensus 151 ~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~------~---~~~~~~A~~~g~~aa~~i~ 214 (223)
T d1ebda1 151 RRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVP------G---PALAHKASYEGKVAAEAIA 214 (223)
T ss_dssp EEESCSSSSTTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSS------S---CCCHHHHHHHHHHHHHHHT
T ss_pred ceecCCCCChHhcCceECCCCCEeECCCCCC-CCCCEEEEeccCC------C---cccHHHHHHHHHHHHHHHc
Confidence 67763 2 5677899999999999999999 9999999999984 2 6778999999999999874
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.68 E-value=1e-16 Score=129.45 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=78.8
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++|+|||||++|+|+|..++.++ .+||++++. ++|+.+++++++.+.+.|+++||+++++ +|++
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g--------------~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 88 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLG--------------IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVE 88 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CEEEEECCchHHHHHHHHHHhcc--------------ccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEE
Confidence 59999999999999999999887 999999986 7999999999999999999999999999 8999
Q ss_pred EeCC-----eEEECCCcEEe-eeEEEEcC
Q 010845 309 VDSQ-----KLILNDGTEVP-YGLLVWST 331 (499)
Q Consensus 309 v~~~-----~v~~~~g~~i~-~D~vi~a~ 331 (499)
++.. .++++||++++ +|.||||.
T Consensus 89 i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 89 IKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 9632 47789998874 79999985
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.9e-16 Score=130.15 Aligned_cols=115 Identities=18% Similarity=0.312 Sum_probs=97.7
Q ss_pred ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEE
Q 010845 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (499)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vt 271 (499)
+..+.+++++|+.++.+.+ +..++++|||||++|+|+|.+|++.... .+.+|+
T Consensus 16 ~~~~~~r~~~d~~~l~~~~-----------------~~~k~i~IvGgG~~G~E~A~~l~~~~~~----------~g~~Vt 68 (137)
T d1m6ia2 16 SRTTLFRKIGDFRSLEKIS-----------------REVKSITIIGGGFLGSELACALGRKARA----------LGTEVI 68 (137)
T ss_dssp HTEEECCSHHHHHHHHHHH-----------------HHCSEEEEECCSHHHHHHHHHHHHHHHH----------HTCEEE
T ss_pred CcEEEEcCHHHHHHHHHHh-----------------hcCCEEEEECCCHHHHHHHHHHHHHHHh----------cCCEEE
Confidence 5677889999999887765 2346999999999999999999765321 127999
Q ss_pred EEeCC-CcCC-CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 272 LIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 272 lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
++++. .+++ .+++++++.+.+.|+++||+++.+ .|++++.+ .++++||++++||+||||+|.
T Consensus 69 ~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 69 QLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred EecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 99997 6776 589999999999999999999999 89999764 588899999999999999994
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.9e-16 Score=139.68 Aligned_cols=149 Identities=26% Similarity=0.390 Sum_probs=110.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
.++|||+|+.|+++|..+++.+ .+|++++...+-.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G--------------~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~ 70 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELG--------------ARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF 70 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccc
Confidence 5999999999999999999988 8999998643200
Q ss_pred -----CCCH------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEE-ECCCcEEeeeEEEEcCCCCcc-h----
Q 010845 281 -----SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPS-T---- 337 (499)
Q Consensus 281 -----~~~~------------~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~-~~~g~~i~~D~vi~a~G~~p~-~---- 337 (499)
.++. .+.....+.++..||+++.++-.....+.++ ..+..++.++.+++++|..|. +
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~ 150 (221)
T d3grsa1 71 PSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERV 150 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEE
T ss_pred cccccchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccc
Confidence 0110 1222334567889999998732222222222 234467889999999997654 1
Q ss_pred ------hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 338 ------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 ------~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
-+++.+++++++|+|.||+++|| +.|+|||+|||+. + +.+.+.|..+|+.||++|..
T Consensus 151 p~~~~l~L~~~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~------~---~~l~~~A~~~G~~aa~~~~~ 213 (221)
T d3grsa1 151 PNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG------K---ALLTPVAIAAGRKLAHRLFE 213 (221)
T ss_dssp ESCTTTTGGGTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGT------S---SCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCcCchhcCcEECCCccEEeCCCccc-cCCcEEEEEEccC------C---cCcHHHHHHHHHHHHHHHcC
Confidence 15566888999999999999999 9999999999984 2 67889999999999998754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.66 E-value=4.8e-16 Score=125.96 Aligned_cols=92 Identities=26% Similarity=0.434 Sum_probs=81.7
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..++++.. .+.+|+++++. +++|.+++++.+.+++.|+++||+++++ .|++
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~-----------~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~ 87 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKA-----------RGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAK 87 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSC-----------TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEE
T ss_pred CeEEEECCChHHHHHHHHhHhhcc-----------cccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEE
Confidence 499999999999999998877631 12799999987 7999999999999999999999999999 8999
Q ss_pred EeCC-----eEEECCCcEEeeeEEEEcCCC
Q 010845 309 VDSQ-----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 309 v~~~-----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
++.+ .+++++|++++||.||||+|.
T Consensus 88 i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 88 VTKNADGTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp EEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence 9643 488899999999999999994
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=1.9e-15 Score=133.97 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=120.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC-----------------CC-----CCHHHHH
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----------------SS-----FDDRLRH 288 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l-----------------~~-----~~~~~~~ 288 (499)
++|+|||||++|+++|..+++.+ .+++++++.... +. .++++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 71 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAE--------------LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTD 71 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEeecccccccccccccchhhhccccccccccchHHHH
Confidence 58999999999999999999887 888888753110 11 1356777
Q ss_pred HHHHHHHhCCCEEEeCceEEEeCC--e-EEECCCcEEeeeEEEEcCCCC-----cchhcccCCCCCCCCCceeeCC-CCC
Q 010845 289 YATTQLSKSGVRLVRGIVKDVDSQ--K-LILNDGTEVPYGLLVWSTGVG-----PSTLVKSLDLPKSPGGRIGIDE-WLR 359 (499)
Q Consensus 289 ~~~~~l~~~gV~v~~~~v~~v~~~--~-v~~~~g~~i~~D~vi~a~G~~-----p~~~~~~~~l~~~~~G~i~vd~-~l~ 359 (499)
.+.+.+++.|+++..+.|.+++.. . ....+..+..+|.+++++|.. |+..+..-++++|++|+|.+|+ .++
T Consensus 72 ~~~~q~~~~g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~ 151 (192)
T d1vdca1 72 KFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQ 151 (192)
T ss_dssp HHHHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCB
T ss_pred HHHHHHHhhcceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceE
Confidence 777888889999987777777653 2 333455688999999999864 5543334478899999999996 688
Q ss_pred CCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 360 ~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
| +.|+|||+|||+.. ..+++..|..+|..+|..+.+++.
T Consensus 152 T-s~~GV~a~GDv~~~--------~~r~~v~A~g~G~~aA~~~~~yl~ 190 (192)
T d1vdca1 152 T-SVPGVFAAGDVQDK--------KYRQAITAAGTGCMAALDAEHYLQ 190 (192)
T ss_dssp C-SSTTEEECGGGGCS--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred e-cCCCEEEeeecCCc--------ccceEEEEEechHHHHHHHHHHHh
Confidence 8 99999999999952 134688899999999999988875
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.65 E-value=3.2e-16 Score=126.90 Aligned_cols=90 Identities=27% Similarity=0.434 Sum_probs=79.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..+..++. .+.+||++++. ++||.+++++++.+.+.|+++||+++++ ++++
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~-----------~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ 89 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKP-----------KDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAK 89 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCC-----------TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred CeEEEECCcHHHHHHHHHhhhccc-----------CCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEE
Confidence 499999999999999999987752 12689999997 7999999999999999999999999999 8999
Q ss_pred EeC--C---eEEECCCcEEeeeEEEEcC
Q 010845 309 VDS--Q---KLILNDGTEVPYGLLVWST 331 (499)
Q Consensus 309 v~~--~---~v~~~~g~~i~~D~vi~a~ 331 (499)
++. + .++++||++++||.||||.
T Consensus 90 ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 90 VELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred EEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 963 2 4888999999999999984
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=2.2e-15 Score=138.12 Aligned_cols=149 Identities=21% Similarity=0.295 Sum_probs=110.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-----CC------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----SF------------------------ 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-----~~------------------------ 282 (499)
.|+|||+|+.|+.+|..+++.+ .+|.+++.....+ .+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G--------------~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~ 70 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFD--------------KKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQA 70 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGC--------------CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhH
Confidence 6999999999999999999887 8999999542100 00
Q ss_pred -----------------C------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--CCC--cEEeeeEEEE
Q 010845 283 -----------------D------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYGLLVW 329 (499)
Q Consensus 283 -----------------~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~--~~g--~~i~~D~vi~ 329 (499)
+ ..+...+...|++.+|+++.+.-.-...+.+.. .++ ..+.++.+++
T Consensus 71 ~~~~~~~gi~~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi 150 (235)
T d1h6va1 71 LKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLI 150 (235)
T ss_dssp HHHTTTTTBCCCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEE
T ss_pred hhhhhccccccccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceeccccccccccccccccee
Confidence 0 012222344567789999988544455554333 333 3588999999
Q ss_pred cCCCCcch-----------hcccCCCCCCC-CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHH
Q 010845 330 STGVGPST-----------LVKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397 (499)
Q Consensus 330 a~G~~p~~-----------~~~~~~l~~~~-~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~ 397 (499)
++|.+|.. .+...+++++. .|+|.||++||| +.|+|||+|||+. + .+.+++.|+.+|+.
T Consensus 151 ~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~T-svpgIyA~GDv~~-----g---~~~l~~~A~~eG~~ 221 (235)
T d1h6va1 151 ATGERPRYLGIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQT-NVPYIYAIGDILE-----G---KLELTPVAIQAGRL 221 (235)
T ss_dssp CCCEEECCCSSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBC-SSTTEEECGGGBT-----T---SCCCHHHHHHHHHH
T ss_pred ecCCCceeEEEeeccceeeccccceeeeccccCccccCCcccc-CCCCEEEEEeccC-----C---CcccHHHHHHHHHH
Confidence 99999862 12344677775 599999999999 9999999999984 2 26788999999999
Q ss_pred HHHHHH
Q 010845 398 LFSLLN 403 (499)
Q Consensus 398 aa~~i~ 403 (499)
+|++|.
T Consensus 222 aa~~~~ 227 (235)
T d1h6va1 222 LAQRLY 227 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999885
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.61 E-value=3.8e-15 Score=135.93 Aligned_cols=148 Identities=23% Similarity=0.344 Sum_probs=104.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------------------------------ 281 (499)
.|+|||+||.|+.+|..+++.+ .+|++|++.+.+..
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G--------------~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G 73 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEG--------------LKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANG 73 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcC
Confidence 6999999999999999999988 89999997642210
Q ss_pred -------CC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCe--------------EEECCCcEEeeeEEE
Q 010845 282 -------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQK--------------LILNDGTEVPYGLLV 328 (499)
Q Consensus 282 -------~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~--------------v~~~~g~~i~~D~vi 328 (499)
+. ..+...........+++++.+.-....+.. ......+...+|-++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (229)
T d1ojta1 74 IKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCI 153 (229)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred CcccCCcccHHHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccccccccccceecceEE
Confidence 00 011122233456678888765222211110 111112345667777
Q ss_pred EcCCCC-cc---hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 329 WSTGVG-PS---TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 329 ~a~G~~-p~---~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++.|.+ |+ ..++.+++++|++|+|.||+++|| +.|+|||+|||+. + |.+++.|+.||+.||.||.
T Consensus 154 l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~T-svpgVyAaGDv~~------~---~~l~~~A~~eG~~Aa~~i~ 222 (229)
T d1ojta1 154 IAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVG------Q---PMLAHKAVHEGHVAAENCA 222 (229)
T ss_dssp ECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTC------S---SCCHHHHHHHHHHHHHHHT
T ss_pred EEecccCCcccccchhhhCccCCCCCCEEcCCCccC-CCCCEEEEEecCC------C---cchHHHHHHHHHHHHHHHc
Confidence 776665 43 256788999999999999999999 9999999999984 2 6788999999999999874
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.60 E-value=4.5e-15 Score=135.11 Aligned_cols=148 Identities=22% Similarity=0.308 Sum_probs=110.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---CCCC-------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD------------------------- 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---~~~~------------------------- 283 (499)
.|+|||||+.|+.+|..+++.+ .+|.++++.... ..+.
T Consensus 5 DviIIGgGpAGl~aA~~aar~G--------------~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~ 70 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLG--------------LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAH 70 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhh
Confidence 6999999999999999999988 899999864211 0110
Q ss_pred ----------------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEE--ECC--CcEEeeeEEEEcC
Q 010845 284 ----------------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLI--LND--GTEVPYGLLVWST 331 (499)
Q Consensus 284 ----------------------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~--~~~--g~~i~~D~vi~a~ 331 (499)
..+...+...++..||+++.+........... ..+ ..++.++.+++++
T Consensus 71 ~~~~~~gi~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 150 (229)
T d3lada1 71 ESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILAS 150 (229)
T ss_dssp TTSGGGTEECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECC
T ss_pred hhhhhcccccCcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccC
Confidence 01122234455678899987743333333222 222 2468899999999
Q ss_pred CCCcch----------hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 010845 332 GVGPST----------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSL 401 (499)
Q Consensus 332 G~~p~~----------~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~ 401 (499)
|.+|.. ++.++|+.+|++|+|.||+++|| +.|+|||+|||.. + |.+++.|..+|+.+|++
T Consensus 151 G~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T-~vpgiyA~GDv~~------g---~~l~~~A~~~G~~aa~~ 220 (229)
T d3lada1 151 GSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGDVVR------G---AMLAHKASEEGVVVAER 220 (229)
T ss_dssp CEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGGGSS------S---CCCHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccchHhcCeeecCCCcEEecccccC-CCCCEEEEeCCcc------h---HHHHHHHHHHHHHHHHH
Confidence 988752 45567889999999999999999 9999999999984 2 67889999999999998
Q ss_pred HH
Q 010845 402 LN 403 (499)
Q Consensus 402 i~ 403 (499)
|.
T Consensus 221 i~ 222 (229)
T d3lada1 221 IA 222 (229)
T ss_dssp HH
T ss_pred Hc
Confidence 86
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.60 E-value=3.4e-15 Score=120.37 Aligned_cols=88 Identities=30% Similarity=0.438 Sum_probs=79.8
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..+++++ ++||++++. +++|.+++++.+.+++.|+++||+++++ +|++
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g--------------~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 87 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLG--------------AQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEG 87 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEE
T ss_pred CeEEEECCCHHHHHHHHHHhhcc--------------cceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEE
Confidence 49999999999999999999988 899999996 7999999999999999999999999999 8999
Q ss_pred EeCCeEEECC----CcEEeeeEEEEcCC
Q 010845 309 VDSQKLILND----GTEVPYGLLVWSTG 332 (499)
Q Consensus 309 v~~~~v~~~~----g~~i~~D~vi~a~G 332 (499)
++++.....+ +++++||.|++|+|
T Consensus 88 i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 88 YENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred EcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 9987655432 35799999999998
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.59 E-value=1.5e-14 Score=130.98 Aligned_cols=146 Identities=32% Similarity=0.509 Sum_probs=107.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
.++|||||+.|+++|..+++++ .+|++|+++.+-.
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~ 72 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLG--------------IPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSP 72 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhcccccc
Confidence 7999999999999999999998 8999998643200
Q ss_pred --------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhc-
Q 010845 281 --------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV- 339 (499)
Q Consensus 281 --------~~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~- 339 (499)
... ..........+.+.+++++.++..-++...+. .++.++.+|.+++|||.+|..+.
T Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~-~~~~~i~a~~viiAtG~~p~~lp~ 151 (220)
T d1lvla1 73 LGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE-VDGQRIQCEHLLLATGSSSVELPR 151 (220)
T ss_dssp TCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEE-ETTEEEECSEEEECCCEEECCBTE
T ss_pred ceEEeccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCccccc-ccceeEeeceeeEcCCCCcccccc
Confidence 000 01112223455677888888754444444443 35678999999999999886421
Q ss_pred ---------ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 340 ---------KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 340 ---------~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
...++.+ ++|+|.||+++|| +.|+|||+|||+. + |.+++.|..+|+.||++|.
T Consensus 152 ~~~~~~~~~~~~~~~~-~~g~i~vd~~~~T-~~~~I~A~GDv~~------~---~~l~~~a~~~g~~~a~~i~ 213 (220)
T d1lvla1 152 RPRTKGFNLECLDLKM-NGAAIAIDERCQT-SMHNVWAIGDVAG------E---PMLAHRAMAQGEMVAEIIA 213 (220)
T ss_dssp EECCSSSSGGGSCCCE-ETTEECCCTTCBC-SSTTEEECGGGGC------S---SCCHHHHHHHHHHHHHHHT
T ss_pred cccccCCcceeeehhh-cCCcccccchhhc-CCCCEEEEEEeCC------c---ccchhhhhhhHHHHHHHHc
Confidence 1223333 3588999999999 9999999999994 3 7799999999999999874
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.59 E-value=2.6e-18 Score=157.84 Aligned_cols=168 Identities=13% Similarity=0.064 Sum_probs=97.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEE
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (499)
...++|+|||||+|||++|..|++.|++|+|+|+++....+........+.................+.. ....
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 120 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLK-KNKE----- 120 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHT-TCTT-----
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhh-ccee-----
Confidence 4568999999999999999999999999999999988766543332222221111111111111111111 1110
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc-CccCCCHHHHHHHHHHHHHHHhhcC
Q 010845 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
..++...+.+.... ..++.||+||+|||+.+..+.+++.+.. ....... ..
T Consensus 121 -~~~~~~~~~~~~~~-----------~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~--------------~~-- 172 (233)
T d1djqa3 121 -SQLALGQKPMTADD-----------VLQYGADKVIIATGASECTLWNELKARESEWAENDI--------------KG-- 172 (233)
T ss_dssp -CEEECSCCCCCHHH-----------HHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTC--------------CE--
T ss_pred -eeeecccccccchh-----------hhhhccceeeeccCCCcccccccccccccccchhhh--------------hh--
Confidence 11122222222111 1357899999999998766544432110 0000000 00
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC
Q 010845 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL 279 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l 279 (499)
........++++|+|||++|+|+|.+|+..+ .+|+++++. .++
T Consensus 173 ----~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~r~~~~~ 216 (233)
T d1djqa3 173 ----IYLIGDAEAPRLIADATFTGHRVAREIEEAN--------------PQIAIPYKRETIA 216 (233)
T ss_dssp ----EEECGGGTSCCCHHHHHHHHHHHHHTTTSSC--------------TTSCCCCCCCCCC
T ss_pred ----hhhccccCCceeEecCchHHHHHHHHHHhcC--------------CceEEEEeccccc
Confidence 0001123468999999999999999999876 789999986 443
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.58 E-value=8.1e-15 Score=118.70 Aligned_cols=88 Identities=23% Similarity=0.390 Sum_probs=78.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..++.++ ++||++++. +++|.+++++.+.+++.|++.||+++++ ++++
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G--------------~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~ 88 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLG--------------AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTG 88 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEE
T ss_pred CeEEEECCChHHHHHHHHHHHcC--------------CceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEE
Confidence 39999999999999999999998 999999987 7999999999999999999999999999 8998
Q ss_pred EeCC----eEEECCC---cEEeeeEEEEcCC
Q 010845 309 VDSQ----KLILNDG---TEVPYGLLVWSTG 332 (499)
Q Consensus 309 v~~~----~v~~~~g---~~i~~D~vi~a~G 332 (499)
++.+ .+++.++ ++++||.|++|+|
T Consensus 89 i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 89 TEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 8653 3555443 5799999999998
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=2.9e-15 Score=121.86 Aligned_cols=88 Identities=18% Similarity=0.373 Sum_probs=75.7
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 309 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v 309 (499)
++++|||||++|+|+|..+++++ .+||+++++++++.+++++++.+.+.|+++||+++++ .|+++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG--------------~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~ 86 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIG--------------LDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKI 86 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEE
T ss_pred CeEEEECCCccHHHHHHHHhhcC--------------CeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEE
Confidence 39999999999999999999998 8999999888999999999999999999999999999 78777
Q ss_pred eC---C-----eEEECCC-----cEEeeeEEEEcCC
Q 010845 310 DS---Q-----KLILNDG-----TEVPYGLLVWSTG 332 (499)
Q Consensus 310 ~~---~-----~v~~~~g-----~~i~~D~vi~a~G 332 (499)
+. + .+.+.++ .+++||.|++|+|
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 87 EQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 43 1 2333322 2468999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.57 E-value=3.2e-15 Score=121.89 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=78.4
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..++.++ .+||++++. +++|.+++++.+.+++.|+++||+++.+ ++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G--------------~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~ 92 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLG--------------SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVA 92 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred CeEEEECCCHHHHHHHHHhhcCC--------------CEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEE
Confidence 49999999999999999999998 999999997 7999999999999999999999999999 8888
Q ss_pred EeC--Ce--EEECC--C--cEEeeeEEEEcCCC
Q 010845 309 VDS--QK--LILND--G--TEVPYGLLVWSTGV 333 (499)
Q Consensus 309 v~~--~~--v~~~~--g--~~i~~D~vi~a~G~ 333 (499)
++. ++ +.+++ | +++++|.|++|+|.
T Consensus 93 v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 93 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred EEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 864 33 44432 3 47999999999994
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.7e-16 Score=136.31 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=85.0
Q ss_pred CCCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010845 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 58 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
+...+++|+|||||||||+||..|+++|++|+|+|+.+....+..+.....+.....++...+... +. ..++++..
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~---~~-~~gV~i~l 114 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRM---IE-VTGVTLKL 114 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHH---HH-HHTCEEEE
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHh---hh-cCCeEEEe
Confidence 334568999999999999999999999999999999998877654433333333332222222222 22 24666544
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
++. |+.+ ....||.+|+|||+.++.+.+||.+
T Consensus 115 ~~~---------Vt~~-------------~~~~~d~vilAtG~~~~~~~~pg~~-------------------------- 146 (179)
T d1ps9a3 115 NHT---------VTAD-------------QLQAFDETILASGIPNRALAQPLID-------------------------- 146 (179)
T ss_dssp SCC---------CCSS-------------SSCCSSEEEECCCEECCTTHHHHHT--------------------------
T ss_pred CCE---------Eccc-------------ccccceeEEEeecCCCcccccchhc--------------------------
Confidence 321 1111 2457999999999988776655532
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHH
Q 010845 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFS 246 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A 246 (499)
..++++|+|+|.+++++.
T Consensus 147 -----------~g~~v~vigggd~a~~~~ 164 (179)
T d1ps9a3 147 -----------SGKTVHLIGGCDVAMELD 164 (179)
T ss_dssp -----------TTCCEEECGGGTCCSSCC
T ss_pred -----------cCCEEEEECCcHhhhhcc
Confidence 124899999999998863
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=7.7e-15 Score=120.01 Aligned_cols=88 Identities=30% Similarity=0.449 Sum_probs=76.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..+++++ .+||+++++ +++|.+++++.+.+.+.|+++||+++++ ++++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 88 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALG--------------SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKE 88 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhcCC--------------cEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 49999999999999999999988 899999997 7999999999999999999999999999 8998
Q ss_pred EeC--CeEEE-----CCC------cEEeeeEEEEcCC
Q 010845 309 VDS--QKLIL-----NDG------TEVPYGLLVWSTG 332 (499)
Q Consensus 309 v~~--~~v~~-----~~g------~~i~~D~vi~a~G 332 (499)
++. +++.+ .+| ..++||.|+||+|
T Consensus 89 i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 89 VKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 853 33322 233 2578999999998
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.6e-14 Score=126.33 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=115.6
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc----C--------CC-----CCHHHHHHHH
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L--------SS-----FDDRLRHYAT 291 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~----l--------~~-----~~~~~~~~~~ 291 (499)
+.++|+|||||++|++.|..+++.+ .+|+++++.+. + +. .+.++.+...
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g--------------~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 69 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH 69 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTT--------------CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--------------CceEEEEeecccccccccchhhhhhccccccchHHHHHHHH
Confidence 3458999999999999999999887 89999986421 1 11 2356777788
Q ss_pred HHHHhCCCEEEeCceEEEeCC--e-EEECCCcEEeeeEEEEcCCCCcch---hc--ccCCCCCCCCCceeeCC-----CC
Q 010845 292 TQLSKSGVRLVRGIVKDVDSQ--K-LILNDGTEVPYGLLVWSTGVGPST---LV--KSLDLPKSPGGRIGIDE-----WL 358 (499)
Q Consensus 292 ~~l~~~gV~v~~~~v~~v~~~--~-v~~~~g~~i~~D~vi~a~G~~p~~---~~--~~~~l~~~~~G~i~vd~-----~l 358 (499)
+.+.+.++++..+.|.++... . .......+++++.+++++|..+.. .. ..-.++++ +|+|.+|+ .+
T Consensus 70 ~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~ 148 (190)
T d1trba1 70 EHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNAT 148 (190)
T ss_dssp HHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTT
T ss_pred HHHHhcCcEEecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCccccc
Confidence 888899999988788887654 2 223345689999999999987641 11 11123443 58899984 45
Q ss_pred CCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 359 ~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+| +.|+|||+|||+.. ..+++..|..+|..||.++.+++.
T Consensus 149 ~T-~v~gV~aaGDv~~~--------~~~q~i~Aag~G~~AA~~a~~yl~ 188 (190)
T d1trba1 149 QT-SIPGVFAAGDVMDH--------IYRQAITSAGTGCMAALDAERYLD 188 (190)
T ss_dssp BC-SSTTEEECGGGGCS--------SSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cc-ccCeEEEeEEecCc--------ceeEEEEEeccHHHHHHHHHHHHh
Confidence 77 99999999999841 246788899999999998888774
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.54 E-value=1.5e-14 Score=116.98 Aligned_cols=86 Identities=27% Similarity=0.505 Sum_probs=75.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..+++++ .+||++++. ++++.+++++.+.+.+.|+++||+++++ .|++
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G--------------~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~ 88 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFG--------------TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKG 88 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred CeEEEECCCccceeeeeeecccc--------------cEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEE
Confidence 49999999999999999999988 999999987 7999999999999999999999999999 8998
Q ss_pred EeC--Ce--EEE-CCC--cEEeeeEEEEc
Q 010845 309 VDS--QK--LIL-NDG--TEVPYGLLVWS 330 (499)
Q Consensus 309 v~~--~~--v~~-~~g--~~i~~D~vi~a 330 (499)
++. ++ +.+ .+| +++++|.|+++
T Consensus 89 i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 89 AEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred EEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 864 33 333 344 56999999974
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.52 E-value=2.4e-14 Score=116.58 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=78.1
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 307 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~ 307 (499)
.++++|||||++|+|+|..++.++ .+|+++++. ++++.+++++++.+.+.++++||+++++ ++.
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g--------------~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~ 87 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATG--------------RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVT 87 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcc--------------hhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEE
Confidence 469999999999999999999887 999999997 6889999999999999999999999999 898
Q ss_pred EEeCC------eEE---ECCCcEEeeeEEEEcCC
Q 010845 308 DVDSQ------KLI---LNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 308 ~v~~~------~v~---~~~g~~i~~D~vi~a~G 332 (499)
+++.+ .+. ..++++++||+||+|+|
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 88 RIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 88654 122 23457899999999998
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=6.6e-14 Score=113.72 Aligned_cols=86 Identities=21% Similarity=0.335 Sum_probs=75.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..+++++ .+||++++. ++||.+++++.+.+++.|+++||+++++ +|++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG--------------~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~ 89 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLG--------------SKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVIS 89 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred CeEEEECCCchHHHHHHHHHhhC--------------cceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEE
Confidence 49999999999999999999998 999999986 7999999999999999999999999999 8888
Q ss_pred EeC--C----eEEECCC-----cEEeeeEEEEc
Q 010845 309 VDS--Q----KLILNDG-----TEVPYGLLVWS 330 (499)
Q Consensus 309 v~~--~----~v~~~~g-----~~i~~D~vi~a 330 (499)
++. + .+++.++ ++++||.|++|
T Consensus 90 v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 90 AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 864 2 2344433 47999999986
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.49 E-value=3.6e-13 Score=123.46 Aligned_cols=74 Identities=20% Similarity=0.408 Sum_probs=64.7
Q ss_pred cEEeeeEEEEcCCCCcchh-----------cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchH
Q 010845 320 TEVPYGLLVWSTGVGPSTL-----------VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALA 388 (499)
Q Consensus 320 ~~i~~D~vi~a~G~~p~~~-----------~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~ 388 (499)
+++++|.+++++|.+|... ++.++++++++|+|.||+++|| +.|+|||+|||+. + +.++
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-s~~~iyA~GDv~~------~---~~~~ 217 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTD------R---VMLT 217 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGC------S---CCCH
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCc-CCCCEEEEEECCC------C---ccch
Confidence 5789999999999988632 4566888999999999999999 9999999999984 2 6788
Q ss_pred HHHHHHHHHHHHHHH
Q 010845 389 QVAERQGKYLFSLLN 403 (499)
Q Consensus 389 ~~A~~~g~~aa~~i~ 403 (499)
+.|..||+.+|++|.
T Consensus 218 ~~A~~eg~~aa~~~~ 232 (240)
T d1feca1 218 PVAINEGAAFVDTVF 232 (240)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 899999999999885
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=3.5e-13 Score=122.79 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=102.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC-------CC-------H-------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS-------FD-------D------------- 284 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~-------~~-------~------------- 284 (499)
.|+|||+|+.|+.+|..+++.+ .+|++++....+.. ++ .
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G--------------~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~ 72 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLG--------------FNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKR 72 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhc
Confidence 7999999999999999999987 89999997532210 00 0
Q ss_pred ------------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE--C--------CCcEEeeeEEEE-
Q 010845 285 ------------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--N--------DGTEVPYGLLVW- 329 (499)
Q Consensus 285 ------------------------~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~--~--------~g~~i~~D~vi~- 329 (499)
.+.......+++.+|+++.+.-.=++...+.. . ....++++.++.
T Consensus 73 Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~ 152 (233)
T d1v59a1 73 GIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVA 152 (233)
T ss_dssp TEEECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEEC
T ss_pred CeeEeeceecchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEecccccceeeeeeeccCCeEEEe
Confidence 01111222334556666654211111111111 1 112345555544
Q ss_pred -------cCCCCcch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHH
Q 010845 330 -------STGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 399 (499)
Q Consensus 330 -------a~G~~p~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa 399 (499)
++|.+|+. .++.+|++++++|+|.||++++| +.|+|||+|||.. + |.+++.|..+|+.||
T Consensus 153 ~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T-~~~~v~A~GD~~~------g---~~l~~~a~~~G~~aa 222 (233)
T d1v59a1 153 TGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDVTF------G---PMLAHKAEEEGIAAV 222 (233)
T ss_dssp CCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGGSS------S---CCCHHHHHHHHHHHH
T ss_pred cccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEec-CCCCEEEEcCCcc------c---HHHHHHHHHHHHHHH
Confidence 88888873 35677899999999999999999 9999999999984 2 678999999999999
Q ss_pred HHHHH
Q 010845 400 SLLNR 404 (499)
Q Consensus 400 ~~i~~ 404 (499)
++|..
T Consensus 223 ~~i~~ 227 (233)
T d1v59a1 223 EMLKT 227 (233)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 99853
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.47 E-value=2.7e-13 Score=110.23 Aligned_cols=87 Identities=26% Similarity=0.385 Sum_probs=76.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 308 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~ 308 (499)
++++|||||++|+|+|..+++++ .+||+++++ +++|.+++++.+.+.+.|++.||+++++ ++.+
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G--------------~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~ 91 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIG--------------SEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVG 91 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred CeEEEEccchHHHHHHHHHHhcC--------------CeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEE
Confidence 49999999999999999999998 999999997 7899999999999999999999999999 8999
Q ss_pred EeCC--e--EEE--C-CC--cEEeeeEEEEcC
Q 010845 309 VDSQ--K--LIL--N-DG--TEVPYGLLVWST 331 (499)
Q Consensus 309 v~~~--~--v~~--~-~g--~~i~~D~vi~a~ 331 (499)
++.+ + +.+ . +| ++++||.|++|+
T Consensus 92 i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 92 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 9754 2 333 2 33 458999999874
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.2e-12 Score=114.59 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=119.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---CcC--------CCC----CHHHHHHHHHHHHh
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL--------SSF----DDRLRHYATTQLSK 296 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~l--------~~~----~~~~~~~~~~~l~~ 296 (499)
.|+|||||++|+++|..+++.+ .+|+++++. +++ +.+ .+.+...+.+..++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G--------------~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKG--------------IRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhh
Confidence 5999999999999999999887 899999863 121 111 25666777777888
Q ss_pred CCCEEEeC-ceEEEeCC-------eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeE
Q 010845 297 SGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~-------~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~If 367 (499)
.+++.... .+..+... .....++.++.++.++.++|..++ ......++.....|.|.||...++ +.|+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t-~~~gv~ 147 (184)
T d1fl2a1 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCET-NVKGVF 147 (184)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBC-SSTTEE
T ss_pred eeceeeccceeeeecccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceee-eCCCEE
Confidence 88888877 66666442 344556778999999999998776 455556677778899999999999 999999
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
++|||...+ .+....|..+|..+|.++...+.
T Consensus 148 a~gd~~~~~--------~~~~vva~g~G~~aA~~~~~~l~ 179 (184)
T d1fl2a1 148 AAGDCTTVP--------YKQIIIATGEGAKASLSAFDYLI 179 (184)
T ss_dssp ECSTTBSCS--------SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeecCcc--------cCCcEEEEECcHHHHHHHHHHHh
Confidence 999999531 34577899999999999888775
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.38 E-value=2.4e-13 Score=118.88 Aligned_cols=112 Identities=24% Similarity=0.298 Sum_probs=86.9
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
+||||||||++|+.+|..|++.+ .+|||||+++.+...+...................... ....+.+..+++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~ 77 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL-----RAHGIQVVHDSA 77 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHH-----HTTTEEEECCCE
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhc-----cccceeEeeeee
Confidence 69999999999999999998865 58999999998877777666665554444333333322 235678888899
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCc
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV 190 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~ 190 (499)
..++...+.+.+.+ ...++||+||+|||..++.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~-----------~~~i~~D~li~atG~~~~~~~i~~~ 116 (186)
T d1fcda1 78 TGIDPDKKLVKTAG-----------GAEFGYDRCVVAPGIELIYDKIEQR 116 (186)
T ss_dssp EECCTTTTEEEETT-----------SCEEECSEEEECCCEEECCTTSTEE
T ss_pred Eeeeeccceeeccc-----------ceeeccceEEEEeccccchhhhhhh
Confidence 99998888877654 2589999999999999998877765
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.34 E-value=5.6e-13 Score=113.51 Aligned_cols=137 Identities=10% Similarity=-0.024 Sum_probs=104.0
Q ss_pred cCCCCccCC-CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEe--CcChHHHHHHHHHHHHH
Q 010845 177 ALGAEASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV--GGGPTGVEFSGELSDFI 253 (499)
Q Consensus 177 AtG~~~~~~-~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVv--GgG~~gve~A~~l~~~~ 253 (499)
|||+.|..| +|||++....++-+.+++.. ....|+ +.++|+ |||++|+|+|..|++++
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~----------~~~~~~---------~~vvi~d~ggg~ig~e~A~~la~~G 64 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMD----------GKKKIG---------KRVVILNADTYFMAPSLAEKLATAG 64 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHH----------TCSCCC---------SEEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhc----------CccccC---------CceEEEecCCChHHHHHHHHHHHcC
Confidence 899999876 89999642222335555432 222232 355555 99999999999999998
Q ss_pred HHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcC
Q 010845 254 MRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWST 331 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~ 331 (499)
.+||++++. .+++.+++.....+.+.|.+.||+++++ ++.+++++.+.+.+....+++.++.++
T Consensus 65 --------------~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~l~~~~~~~~~~v~~~~ 130 (156)
T d1djqa2 65 --------------HEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGP 130 (156)
T ss_dssp --------------CEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTEEEEEETTCSCSCCCCCCT
T ss_pred --------------CeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcceEEEeeeccccceeeeee
Confidence 999999997 5777777788889999999999999999 999999998888776666778888888
Q ss_pred CCCcc-hhcccCCCCC
Q 010845 332 GVGPS-TLVKSLDLPK 346 (499)
Q Consensus 332 G~~p~-~~~~~~~l~~ 346 (499)
|..|+ ......+++.
T Consensus 131 g~~~~~~~~~~~~le~ 146 (156)
T d1djqa2 131 GVSPRDANTSHRWIEF 146 (156)
T ss_dssp TSCSSCCCCCCEEEEC
T ss_pred EEEecccCCccCcEec
Confidence 88887 3444444444
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.1e-11 Score=111.53 Aligned_cols=147 Identities=26% Similarity=0.436 Sum_probs=109.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------------------------------ 281 (499)
.|+|||||+.|+++|..+++++ .+|++|+++.+-..
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G--------------~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g 69 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYG--------------QKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYG 69 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGT
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcC
Confidence 6899999999999999999988 89999997542100
Q ss_pred -------CC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc----hh
Q 010845 282 -------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS----TL 338 (499)
Q Consensus 282 -------~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~----~~ 338 (499)
++ ..+....+..+++.||++....-.......+. .+++.+.++.+++|||..|. +.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~-~~~~~~~~~~~iiatG~~p~ip~ip~ 148 (217)
T d1gesa1 70 FDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLE-VNGETITADHILIATGGRPSHPREPA 148 (217)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEE-ETTEEEEEEEEEECCCEEECCCEEES
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeec-CCCceeeeeeeeeecCccccCCCCCC
Confidence 00 01222334456788999887743333333333 46778999999999998875 21
Q ss_pred c-----ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 339 V-----KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 ~-----~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
. ...++.++++|++.+|+.+++ +.|+||++||+.. | +..++.|.++|+.++.++.
T Consensus 149 ~~~l~l~~~gv~~~~~~~i~~d~~~~t-~~~~i~~iG~g~~-----g----~ela~~~~~~G~~v~~~~~ 208 (217)
T d1gesa1 149 NDNINLEAAGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTG-----A----VELTPVAVAAGRRLSERLF 208 (217)
T ss_dssp CTTSCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECSGGGT-----S----CCCHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccEEEcCCccEeeCchhcc-CCCcEEEECCCcc-----H----HHHHHHHHHHHHHHHHHHh
Confidence 2 234677889999999999999 8899999999994 2 6789999999999997653
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.27 E-value=2.5e-11 Score=110.41 Aligned_cols=98 Identities=16% Similarity=0.297 Sum_probs=70.0
Q ss_pred HhCCCEEEeCceEEEeCCeEEECC--------CcEEeeeEEEEcCCCCcchh-----------cccCCCCCCCCCceeeC
Q 010845 295 SKSGVRLVRGIVKDVDSQKLILND--------GTEVPYGLLVWSTGVGPSTL-----------VKSLDLPKSPGGRIGID 355 (499)
Q Consensus 295 ~~~gV~v~~~~v~~v~~~~v~~~~--------g~~i~~D~vi~a~G~~p~~~-----------~~~~~l~~~~~G~i~vd 355 (499)
...||+++.+.=.......+...+ .+.+++|.++++++..|... ....++.++ +|+|.||
T Consensus 115 ~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~-~G~I~vd 193 (238)
T d1aoga1 115 DTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIK-NGGVQVD 193 (238)
T ss_dssp HSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEE-TTEECCC
T ss_pred cccccEEEEEEeeccccccccccccccccccccccccccceeeecccccccccccccceeeecccccEEEEc-CCeEEec
Confidence 356788887632223333222211 24678889998887776411 233466654 7899999
Q ss_pred CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 356 ~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++|| +.|+|||+|||.. + +.+.+.|..+|+.+|++|.
T Consensus 194 e~~~T-~~~~iyAvGDv~~------~---~~l~~~A~~eg~~aa~~i~ 231 (238)
T d1aoga1 194 EYSRT-NVSNIYAIGDVTN------R---VMLTPVAINEAAALVDTVF 231 (238)
T ss_dssp TTCBC-SSTTEEECGGGGT------S---CCCHHHHHHHHHHHHHHHH
T ss_pred CCeee-ccCCEEEEEEecC------C---ccchhhHHHHHHHHHHHHc
Confidence 99999 9999999999984 2 6788999999999999974
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=3.1e-13 Score=121.81 Aligned_cols=164 Identities=10% Similarity=0.077 Sum_probs=89.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh-----------hhccC-----CCCC-------
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------TCVGT-----LEFR------- 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~-----------~~~g~-----~~~~------- 114 (499)
++||+||||||||++||.++++.|.+|+|||++. +..+.. .+. ..... ....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE 80 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHH
Confidence 5899999999999999999999999999999864 221100 000 00000 0000
Q ss_pred cc-------ccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 115 SV-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 115 ~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+ ...+......+....++.+........+. ..+... ...+.++.+++|||+.|..|.+
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--~~~~~~------------~~~~~~~~~iiatG~~p~ip~i 146 (217)
T d1gesa1 81 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEVN------------GETITADHILIATGGRPSHPRE 146 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEET------------TEEEEEEEEEECCCEEECCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--eeecCC------------CceeeeeeeeeecCccccCCCC
Confidence 00 00011111111222455554433222221 122211 2578999999999999999988
Q ss_pred CCccccCc---cCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHH
Q 010845 188 HGVKENAT---FLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255 (499)
Q Consensus 188 pG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~ 255 (499)
|+.+...+ .+..-+.. . .. .+...+...++|.|||+|.+|+|+|..+...+..
T Consensus 147 p~~~~l~l~~~gv~~~~~~-----~----i~------~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~ 202 (217)
T d1gesa1 147 PANDNINLEAAGVKTNEKG-----Y----IV------VDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRR 202 (217)
T ss_dssp ESCTTSCHHHHTCCBCTTS-----C----BC------CCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHH
T ss_pred CCcCCcccccccEEEcCCc-----c----Ee------eCchhccCCCcEEEECCCccHHHHHHHHHHHHHH
Confidence 87542100 00000000 0 00 0111112234899999999999999988888743
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.8e-12 Score=113.43 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=79.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCcccc-cchhhhhccCCCCC-------------cc---ccc--
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLASTCVGTLEFR-------------SV---AEP-- 119 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~-~~~~~~~~g~~~~~-------------~~---~~~-- 119 (499)
+++++||||||++|+.+|..|++.++ +|++|++++++.|. |.+........... .. ..+
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 82 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence 45789999999999999999987654 69999999988776 44433322211110 00 000
Q ss_pred --hhhhccccccCCCeEEEEE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCC
Q 010845 120 --IARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (499)
Q Consensus 120 --~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG 189 (499)
............+++++.+ +|+.||.+.+.|++.+ | .++.||+||+|||+.+..+.+++
T Consensus 83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~d---G--------~~i~~d~lViAtG~~~~~~~l~~ 144 (213)
T d1m6ia1 83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLND---G--------SQITYEKCLIATGGTEPNVELAK 144 (213)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETT---S--------CEEEEEEEEECCCEEEECCTTHH
T ss_pred hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeecc---c--------eeeccceEEEeeeeecchhhhhh
Confidence 0000001123357777764 7999999999998866 2 48999999999998877655554
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.20 E-value=3.2e-11 Score=106.67 Aligned_cols=112 Identities=20% Similarity=0.235 Sum_probs=79.9
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCCCC-CccccchhhhccccccCCCeEEE-E
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEF-RSVAEPIARIQPAISREPGSYFF-L 137 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (499)
+||||||||++|+.+|..|++. +.+|+++|++++..|.+. ++.+..+.... +.+.....+. +.+ .+++++ .
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---l~~-~gi~v~~~ 76 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEK---MES-RGVNVFSN 76 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHH---HHH-TTCEEEET
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHH---HHH-CCcEEEEe
Confidence 4799999999999999999875 568999999988776643 45455444332 2222222221 222 567654 4
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
.+|++||.+++.+++.+..++ ++..++||+||+|+|+.+..
T Consensus 77 ~~V~~i~~~~~~v~~~~~~~g------~~~~~~~D~li~a~G~~~~~ 117 (198)
T d1nhpa1 77 TEITAIQPKEHQVTVKDLVSG------EERVENYDKLIISPGAVPFE 117 (198)
T ss_dssp EEEEEEETTTTEEEEEETTTC------CEEEEECSEEEECCCEEECC
T ss_pred eceeeEeeccccceeeecccc------cccccccceeeEeecceeec
Confidence 699999999999988764433 35689999999999988754
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=6.1e-11 Score=101.25 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=74.7
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHH------HHHhcC-C----------------CCCceEEEEEeC-CC-cCCCCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRD------VRQRYS-H----------------VKDYIHVTLIEA-NE-ILSSFD 283 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~------~~~~~~-~----------------~~~~~~Vtlv~~-~~-~l~~~~ 283 (499)
.+++|+|||||++|+|+|..+.+.+... .....+ . .....+++.+.. .+ +...+.
T Consensus 28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 107 (162)
T d1ps9a2 28 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLG 107 (162)
T ss_dssp CCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSC
T ss_pred cCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccceeccccceEEEEEeccchhccccc
Confidence 3469999999999999999998765310 001110 0 012245565554 33 444566
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEEC-CCc--EEeeeEEEEcCCC
Q 010845 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILN-DGT--EVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~~-~g~--~i~~D~vi~a~G~ 333 (499)
..........++..||+++++ ++.+++++++.+. +|+ +++||+||+|+|+
T Consensus 108 ~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 108 KTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ 161 (162)
T ss_dssp TTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred hhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence 667778888999999999999 8999999987663 343 5899999999995
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.08 E-value=8e-11 Score=109.10 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=68.2
Q ss_pred hCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch--hcc-cCCCC------CCCCCceeeC----CC
Q 010845 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST--LVK-SLDLP------KSPGGRIGID----EW 357 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~--~~~-~~~l~------~~~~G~i~vd----~~ 357 (499)
..+.++..+ .+..+... .|++.||+.+.+|.++++....... +.. .-.++ ++..+...++ +.
T Consensus 222 ~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~ 301 (347)
T d1b5qa1 222 IVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ 301 (347)
T ss_dssp BCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHH
T ss_pred hcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhh
Confidence 445667776 67776543 4777899999999999987643210 000 00111 1122222222 23
Q ss_pred CCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 358 l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+++ +.++||++||++. ...|.+++.|+.+|+.+|+.|...++
T Consensus 302 ~~~-~~~~v~~~GD~~~-------~~~~~~~~gA~~sG~~aA~~l~~~~~ 343 (347)
T d1b5qa1 302 LRA-PVGRVYFTGEHTS-------EHYNGYVHGAYLSGIDSAEILINCAQ 343 (347)
T ss_dssp HHC-CBTTEEECSGGGC-------SSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-ccCCEEEEEcccc-------CcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455 6789999999985 23477889999999999999999886
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.05 E-value=1.4e-10 Score=99.43 Aligned_cols=103 Identities=26% Similarity=0.368 Sum_probs=73.0
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-cchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEEE
Q 010845 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCA 141 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 141 (499)
||||||||++|+.+|..|++ +.+||||++++...|. +.+.....+......+....... ....+++++. ..++
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~v~ 76 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW----YRKRGIEIRLAEEAK 76 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHH----HHHHTEEEECSCCEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHH----HHhccceeeeecccc
Confidence 79999999999999999976 6799999999877766 45566665555443332222222 1124566654 4788
Q ss_pred EEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010845 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 142 ~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
.+|...+.+..+. .+++||+||+|+|..+.
T Consensus 77 ~i~~~~~~~~~~~------------~~i~~D~li~a~G~~~~ 106 (167)
T d1xhca1 77 LIDRGRKVVITEK------------GEVPYDTLVLATGAPNV 106 (167)
T ss_dssp EEETTTTEEEESS------------CEEECSEEEECCCEECC
T ss_pred ccccccccccccc------------cccccceeEEEEEecCC
Confidence 8988777654433 47999999999998754
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.05 E-value=4.3e-11 Score=112.67 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh---hhhcc-------------------C----CCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---STCVG-------------------T----LEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~---~~~~g-------------------~----~~~~ 114 (499)
+..+|+|||||++||++|++|++.|++|+|+|+++......... +.... . ....
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~ 85 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP 85 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccc
Confidence 35799999999999999999999999999999987653321100 00000 0 0001
Q ss_pred ccccchhhhccccccCCCeEEEEEEEEEEE--CCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC--CCccCCCCCCc
Q 010845 115 SVAEPIARIQPAISREPGSYFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGV 190 (499)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG--~~~~~~~ipG~ 190 (499)
.+...++.+...+.....+.+ .++|+++. .+.+.+++...+ ..++++|+||+||| +.|..|.+|++
T Consensus 86 e~~~Yl~~~a~~~~L~~~I~f-~t~V~~~~~de~~~~W~V~~~~---------~~~~~~~~~i~atG~ls~~~~p~~~~~ 155 (298)
T d1w4xa1 86 EILRYINFVADKFDLRSGITF-HTTVTAAAFDEATNTWTVDTNH---------GDRIRARYLIMASGQLSDALTGALFKI 155 (298)
T ss_dssp HHHHHHHHHHHHTTGGGGEEC-SCCEEEEEEETTTTEEEEEETT---------CCEEEEEEEEECCCSCCCCTTHHHHTS
T ss_pred hHHHHHHHHHHHcCCcccccC-CcEEEEEEEecCCCceeecccc---------ccccccceEEEeecccccccCCccccc
Confidence 122223333222222223433 56788875 455666666522 24789999999999 45777777776
Q ss_pred c
Q 010845 191 K 191 (499)
Q Consensus 191 ~ 191 (499)
+
T Consensus 156 ~ 156 (298)
T d1w4xa1 156 D 156 (298)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.03 E-value=2.7e-10 Score=109.31 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMV 98 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~ 98 (499)
+++|+|||||+|||++|..|++.+ ++|+|+|+++..+
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iG 42 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG 42 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 478999999999999999998765 6999999997653
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.02 E-value=1.2e-09 Score=100.26 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=112.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC---------------------------CCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL---------------------------SSF 282 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l---------------------------~~~ 282 (499)
..|+|||||++|+-+|..+++.+ .+|+++|+.+ +. +.+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G--------------~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~ 70 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLG--------------KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHF 70 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTS
T ss_pred CcEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHH
Confidence 37999999999999999999877 7889988752 21 000
Q ss_pred -------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-----eEEEC
Q 010845 283 -------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-----KLILN 317 (499)
Q Consensus 283 -------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~-----~v~~~ 317 (499)
...+.+.+.+.+++.||+++++ +|.+++. + .++..
T Consensus 71 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~ 150 (253)
T d2gqfa1 71 VKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV 150 (253)
T ss_dssp THHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE
T ss_pred HHHHhhhhcccchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec
Confidence 1234555667778889999999 8888753 1 24456
Q ss_pred CCcEEeeeEEEEcCCCCcc----------hhcccCCCCCCC-----CCcee---eC-CCCCCCCCCCeEEeccccccccC
Q 010845 318 DGTEVPYGLLVWSTGVGPS----------TLVKSLDLPKSP-----GGRIG---ID-EWLRVPSVQDVFAVGDCSGYLES 378 (499)
Q Consensus 318 ~g~~i~~D~vi~a~G~~p~----------~~~~~~~l~~~~-----~G~i~---vd-~~l~~~~~~~Ifa~GD~a~~~~~ 378 (499)
+++++.||.||+|+|-.+. .+++++++..-+ .|.+. +| .+|+....|++|.+|-+..+...
T Consensus 151 ~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~ 230 (253)
T d2gqfa1 151 NSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGW 230 (253)
T ss_dssp TTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEEC
T ss_pred CCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeee
Confidence 7889999999999997643 244555544311 12232 44 35888889999999988876655
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHH
Q 010845 379 TGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 379 ~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
.|+ -.-|.|...|..+++.|.+
T Consensus 231 ~gg----~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 231 LGG----YNFQWAWSSAYACALSISR 252 (253)
T ss_dssp TTT----HHHHHHHHHHHHHHHHHHT
T ss_pred cCC----EehhhhHhHHHHHHHHHhc
Confidence 553 4578899999999998763
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.02 E-value=1.7e-09 Score=94.96 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=103.2
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce-EEEEEeCCCcCC----------CCCHHHHHHHHHHHHhCC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILS----------SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~l~----------~~~~~~~~~~~~~l~~~g 298 (499)
.+||+|||||++|+++|..|++.+ . +|+++++.+.+. ...............+.+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G--------------~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLG--------------YSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLG 69 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTT
T ss_pred CCEEEEECChHHHHHHHHHHHHCC--------------CCeEEEEEecCcccchhhhhccccccccccccchhhhhhccc
Confidence 469999999999999999999987 5 599999874332 234455556666667778
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchh----c-ccCCCCCCCCCceeeCC-CCCCCCCCCeEEecc
Q 010845 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL----V-KSLDLPKSPGGRIGIDE-WLRVPSVQDVFAVGD 371 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~----~-~~~~l~~~~~G~i~vd~-~l~~~~~~~Ifa~GD 371 (499)
.++... .+.. ....+.+..+..+|.+++++|...... . ..........+....+. .+++ +.+.||+.||
T Consensus 70 ~~~~~~~~v~~---~~~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~g~ 145 (196)
T d1gtea4 70 VKIICGKSLSE---NEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-SEPWVFAGGD 145 (196)
T ss_dssp CEEEESCCBST---TSBCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-SSTTEEECSG
T ss_pred eeEEeeEEecc---ceeeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCC-Cccccccccc
Confidence 887766 4321 111222223456889999999765421 1 11122233445555554 4777 8999999999
Q ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010845 372 CSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 372 ~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
+.. + +.++..|..+|+.+|..+.+.++.
T Consensus 146 vig------g---~~~av~a~~~g~~~a~~v~r~~~~ 173 (196)
T d1gtea4 146 IVG------M---ANTTVESVNDGKQASWYIHKYIQA 173 (196)
T ss_dssp GGC------S---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC------C---cchHHHHHHHHhhhehhHhhccHh
Confidence 984 2 567888999999999988877763
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.02 E-value=4.8e-10 Score=89.97 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
+++++|||||+.|+.+|..|++.|.+|++++++++..- . . ..++...+.+. +. ..+++++.+ ++
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~--~--------~-d~ei~~~l~~~---l~-~~Gv~i~~~~~v 86 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP--A--------V-DEQVAKEAQKI---LT-KQGLKILLGARV 86 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST--T--------S-CHHHHHHHHHH---HH-HTTEEEEETCEE
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC--c--------c-cchhHHHHHHH---HH-hcCceeecCcEE
Confidence 37899999999999999999999999999999886421 0 1 11222333332 33 367877664 88
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+.++.++..+++.....+ ...++.+|+|++|+|
T Consensus 87 ~~i~~~~~~v~v~~~~~~------~~~~~~~D~vlvAvG 119 (119)
T d3lada2 87 TGTEVKNKQVTVKFVDAE------GEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEECSSCEEEEEESSS------EEEEEEESEEEECSC
T ss_pred EEEEEeCCEEEEEEEECC------CCEEEECCEEEEeeC
Confidence 999877776555432222 135799999999998
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=3.8e-12 Score=116.15 Aligned_cols=158 Identities=12% Similarity=0.021 Sum_probs=84.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCC-------CeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSL-------YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g-------~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (499)
+++|+|||||||||+||.+|++.| ++|+|+|+.+...... ..+..+.......+.+.........++.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~-----~~gi~p~~~~~~~~~~~~~~~~~~~g~~ 76 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV-----RSGVAPDHPKIKSISKQFEKTAEDPRFR 76 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH-----HHTSCTTCTGGGGGHHHHHHHHTSTTEE
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCee-----eeccCcccccchhhhhhhhhhhccCCce
Confidence 369999999999999999998876 5899999998765421 1111111111111111111123346666
Q ss_pred EEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC-ccCCCHHHHHHHHHHHHHH
Q 010845 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 135 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~-~~~~~~~~~~~~~~~~~~~ 213 (499)
+..... + .+.+.++ .....||++++|||+.+..+.++|..... .........
T Consensus 77 ~~~~~~--v---~~~~~~~------------~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~---------- 129 (239)
T d1lqta2 77 FFGNVV--V---GEHVQPG------------ELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGG---------- 129 (239)
T ss_dssp EEESCC--B---TTTBCHH------------HHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETT----------
T ss_pred EEEEEE--e---ccccchh------------hhhccccceeeecCCCccccccccccccccccchhhhhh----------
Confidence 654321 1 0111111 12357999999999987776666654211 110000000
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHH
Q 010845 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~ 251 (499)
............-..+.++++|+|+|+.+++++..+..
T Consensus 130 ~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~ 167 (239)
T d1lqta2 130 RINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 167 (239)
T ss_dssp EETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred hhccccccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence 00000000000011234578889999999999987654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.00 E-value=4.9e-10 Score=90.09 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=64.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|||+.+++.... ........+.+. + ...+++++. .+|
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~----------~~~~~~~~~~~~---l-~~~GV~i~~~~~v 95 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA----------APATLADFVARY---H-AAQGVDLRFERSV 95 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------SCHHHHHHHHHH---H-HTTTCEEEESCCE
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc----------CCHHHHHHHHHH---H-HHCCcEEEeCCEE
Confidence 4789999999999999999999999999999998743211 011122222222 2 336788765 467
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+++.. ..+++++ + .++++|.+|+|+|
T Consensus 96 ~~~~~--~~v~l~d---g--------~~i~~D~vi~a~G 121 (121)
T d1d7ya2 96 TGSVD--GVVLLDD---G--------TRIAADMVVVGIG 121 (121)
T ss_dssp EEEET--TEEEETT---S--------CEEECSEEEECSC
T ss_pred EEEeC--CEEEECC---C--------CEEECCEEEEeeC
Confidence 77654 4566554 2 4899999999998
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.00 E-value=2.6e-09 Score=97.64 Aligned_cols=156 Identities=16% Similarity=0.211 Sum_probs=108.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC---------------CC--------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------SF-------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~---------------~~-------------- 282 (499)
.|+|||||++|+-+|..|++.+ .+|+++++.+... ..
T Consensus 4 DViIIGaG~aGl~aA~~la~~G--------------~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEG--------------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR 69 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchh
Confidence 6999999999999999999877 8999998752111 00
Q ss_pred ---------------------------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC---eEEEC
Q 010845 283 ---------------------------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLILN 317 (499)
Q Consensus 283 ---------------------------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~---~v~~~ 317 (499)
...+.+.+.+.+++.||+++.+ +|+++. ++ .|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~ 149 (251)
T d2i0za1 70 FLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ 149 (251)
T ss_dssp GGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET
T ss_pred hhhhhhhhhhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeC
Confidence 0123445566778899999999 888875 33 47788
Q ss_pred CCcEEeeeEEEEcCCCCcch----------hcccCCCCCCCC--CceeeC----CCCCCCCCCCeEEeccccccccCCCC
Q 010845 318 DGTEVPYGLLVWSTGVGPST----------LVKSLDLPKSPG--GRIGID----EWLRVPSVQDVFAVGDCSGYLESTGK 381 (499)
Q Consensus 318 ~g~~i~~D~vi~a~G~~p~~----------~~~~~~l~~~~~--G~i~vd----~~l~~~~~~~Ifa~GD~a~~~~~~g~ 381 (499)
+|+++.+|.||+|+|....+ +++..+..+.+- +.+.++ ..+.....|++|++|++.......|+
T Consensus 150 ~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG 229 (251)
T d2i0za1 150 TGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG 229 (251)
T ss_dssp TCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT
T ss_pred CCCeEecCeEEEccCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch
Confidence 99999999999999976532 344445433211 111111 23333478999999999865544443
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHH
Q 010845 382 TVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 382 ~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
.....|...|+.++..+...
T Consensus 230 ----~~~~~a~~~G~~a~~~~~~~ 249 (251)
T d2i0za1 230 ----YNITSALVTGRIAGTTAGEN 249 (251)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999887654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.98 E-value=4e-09 Score=98.10 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=62.4
Q ss_pred HHHhcCCCC-CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEE
Q 010845 257 VRQRYSHVK-DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 257 ~~~~~~~~~-~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~ 329 (499)
+.+.+|.+. +.....+..+. ..+ .+..+...+.+.+++.|++++.+ +|.+++.+ .|.+++| ++.||.||+
T Consensus 123 ~~~~~p~~~~~~~~~~~~~~~~g~~--~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VVi 199 (281)
T d2gf3a1 123 INKRWPGITVPENYNAIFEPNSGVL--FSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIV 199 (281)
T ss_dssp HHHHSTTCCCCTTEEEEEETTCEEE--EHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEE
T ss_pred hhhhhhcccccccceeeeccccccc--cccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEE
Confidence 344566654 23344444443 111 24577888888999999999998 89988643 4566665 699999999
Q ss_pred cCCCCcchhcccCCCCCC
Q 010845 330 STGVGPSTLVKSLDLPKS 347 (499)
Q Consensus 330 a~G~~p~~~~~~~~l~~~ 347 (499)
|+|...+.++..+|+...
T Consensus 200 AaG~~s~~l~~~lg~~~~ 217 (281)
T d2gf3a1 200 SMGAWNSKLLSKLNLDIP 217 (281)
T ss_dssp CCGGGHHHHGGGGTEECC
T ss_pred CCCCcchhhHHhcCCccc
Confidence 999998888888886553
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.97 E-value=2.5e-11 Score=112.23 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=31.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+||+|||||+||++||.++++.|.+|+|||++.
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~ 34 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR 34 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 689999999999999999999999999999864
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.96 E-value=1.2e-09 Score=96.97 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=71.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc----cchhhhhcc----CCCCCc--cccchhhhccccccCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLASTCVG----TLEFRS--VAEPIARIQPAISREP 131 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~----~~~~~~~~g----~~~~~~--~~~~~~~~~~~~~~~~ 131 (499)
.+||+|||||+||++||.++++.|.++.||+.+...... |.......+ ..+... +..+-.+....+....
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~ 81 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR 81 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence 489999999999999999999999999999986321111 111110000 011110 1111111222345567
Q ss_pred CeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc
Q 010845 132 GSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (499)
Q Consensus 132 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~ 182 (499)
+..+++++|+.+..+++.+.--...++ .++.++.||||||+-.
T Consensus 82 nL~i~q~~V~dli~e~~~v~gV~t~~G--------~~~~AkaVILtTGTFL 124 (230)
T d2cula1 82 PLHLFQATATGLLLEGNRVVGVRTWEG--------PPARGEKVVLAVGSFL 124 (230)
T ss_dssp TEEEEECCEEEEEEETTEEEEEEETTS--------CCEECSEEEECCTTCS
T ss_pred CHHHHhccceeeEecccceeeEEeccc--------cEEEEeEEEEccCcce
Confidence 899999999999877776542222223 4799999999999753
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.94 E-value=2.5e-10 Score=91.18 Aligned_cols=94 Identities=19% Similarity=0.364 Sum_probs=63.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
+++++|||||+.|+.+|..|++.|.+|||||+.+...- ..+ .++...+.+. +.+ .+++++.+ +|
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~----------~~d-~~~~~~l~~~---l~~-~gV~i~~~~~V 85 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP----------TYD-SELTAPVAES---LKK-LGIALHLGHSV 85 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST----------TSC-HHHHHHHHHH---HHH-HTCEEETTCEE
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccc----------ccc-chhHHHHHHH---HHh-hcceEEcCcEE
Confidence 36899999999999999999999999999999886421 011 1222333333 222 46776654 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+.++.. ...+...++ ++.++++|.+++|+|
T Consensus 86 ~~i~~~--~~~~~~~~~-------~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 86 EGYENG--CLLANDGKG-------GQLRLEADRVLVAVG 115 (115)
T ss_dssp EEEETT--EEEEECSSS-------CCCEECCSCEEECCC
T ss_pred EEEcCC--eEEEEEcCC-------CeEEEEcCEEEEecC
Confidence 888643 333322221 235799999999998
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=4.2e-10 Score=89.92 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=63.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
+++|+|||||+.|+.+|..|++.|.+|||+|+.+...-. .+ .++...+.+. +.+ .+++++.+ ++
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~----------~d-~~~~~~~~~~---l~~-~GV~~~~~~~v 85 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS----------FD-PMISETLVEV---MNA-EGPQLHTNAIP 85 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------SC-HHHHHHHHHH---HHH-HSCEEECSCCE
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh----------cc-hhhHHHHHHH---HHH-CCCEEEeCCEE
Confidence 368999999999999999999999999999998864311 11 1122223332 222 57777664 77
Q ss_pred EEEECCCC-EEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+.+..... .+++.. .++ .++++|.||+|||
T Consensus 86 ~~i~~~~~~~~~v~~-~~g--------~~~~~D~vi~a~G 116 (116)
T d1gesa2 86 KAVVKNTDGSLTLEL-EDG--------RSETVDCLIWAIG 116 (116)
T ss_dssp EEEEECTTSCEEEEE-TTS--------CEEEESEEEECSC
T ss_pred EEEEEcCCcEEEEEE-CCC--------CEEEcCEEEEecC
Confidence 77765432 344332 112 4789999999998
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.93 E-value=5.1e-10 Score=102.52 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=33.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++||+|||||++|++||..|++.|++|+|||+++..
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999998654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.92 E-value=9e-10 Score=95.78 Aligned_cols=104 Identities=22% Similarity=0.367 Sum_probs=68.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCCe--EEEEcCCCCcccc-cchhhhhccCCCCCccccchhhhccccccCCCeEEEE-E
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~--V~lie~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (499)
.+|||||||++|+.+|..|++.|.+ +++++++....|. +.+............+. .......+++++. .
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~ 76 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR-------LDCKRAPEVEWLLGV 76 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSB-------CCGGGSTTCEEEETC
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHH-------HHHhhcCCeEEEEec
Confidence 5699999999999999999987765 5556666554443 22222211111111111 1122235677665 4
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+++.++.+.+.+.+.+ + .+++||+||+|+|..|+.
T Consensus 77 ~v~~i~~~~~~~~~~~---g--------~~~~~D~vi~a~G~~p~~ 111 (183)
T d1d7ya1 77 TAQSFDPQAHTVALSD---G--------RTLPYGTLVLATGAAPRA 111 (183)
T ss_dssp CEEEEETTTTEEEETT---S--------CEEECSEEEECCCEEECC
T ss_pred cccccccccceeEecC---C--------cEeeeeeEEEEEEEEccc
Confidence 8899999998887765 2 489999999999998865
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.5e-09 Score=87.87 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=66.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++|+|||||+.|+.+|..|++.|.+|||+++++.+.- . .+ .++...+.+. +. ..+++++. .++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~--~--------~d-~~~~~~~~~~---l~-~~Gv~i~~~~~v 86 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR--S--------FD-SMISTNCTEE---LE-NAGVEVLKFSQV 86 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT--T--------SC-HHHHHHHHHH---HH-HTTCEEETTEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc--c--------hh-hHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 36899999999999999999999999999999886421 0 11 1122223322 32 35777765 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+.+......+.++...............+++|+|++|+|
T Consensus 87 ~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 87 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 888766655444322111111111224578999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.90 E-value=1.2e-09 Score=89.40 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=63.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+|||+.+...-.. ....+...+.+. + ...+++++.+ +|
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~----------~~~~~~~~~~~~---~-~~~GV~i~~~~~v 100 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV----------TAPPVSAFYEHL---H-REAGVDIRTGTQV 100 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------SCHHHHHHHHHH---H-HHHTCEEECSCCE
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc----------cchhhhhhhhhc---c-cccccEEEeCCeE
Confidence 4789999999999999999999999999999988642110 011112222222 2 2357777654 77
Q ss_pred EEEECC--CCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~--~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+.++.. +..++.....+| .++++|.+|+|+|
T Consensus 101 ~~i~~~~~~~~v~~v~~~~G--------~~i~~D~vi~a~G 133 (133)
T d1q1ra2 101 CGFEMSTDQQKVTAVLCEDG--------TRLPADLVIAGIG 133 (133)
T ss_dssp EEEEECTTTCCEEEEEETTS--------CEEECSEEEECCC
T ss_pred EEEEEeCCCceEEEEECCCC--------CEEECCEEEEeeC
Confidence 777643 333332222223 4799999999998
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=5.4e-09 Score=84.42 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=72.8
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceE
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 307 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~ 307 (499)
+.|+|+|||||.+|+|.|..|+++. .+|+++++++-+. .++...+.+.+.....+|.++.+ .+.
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a--------------~~V~li~r~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVENGNIILHTNRTLE 90 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCC-CCHHHHHHHHHHHHTSSEEEECSCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcC--------------CcEEEEeeccccc-chhHHHHHHHHhhcccceeEecceEEE
Confidence 4469999999999999999999887 8999999975443 36777788888888889999998 888
Q ss_pred EEeCC-----eEEECCC------cEEeeeEEEEcCC
Q 010845 308 DVDSQ-----KLILNDG------TEVPYGLLVWSTG 332 (499)
Q Consensus 308 ~v~~~-----~v~~~~g------~~i~~D~vi~a~G 332 (499)
++.++ +|++.|. +++++|.+++++|
T Consensus 91 ~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 91 EVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred EEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 88764 3556542 4699999999987
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.88 E-value=3.7e-10 Score=103.80 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=33.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+++||+|||||+|||+||..|++.|++|+|||+++..
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998654
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.87 E-value=3.1e-09 Score=84.93 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++|+|||||+.|+.+|..|++.|.+|||||+.+.+.- ..+ .++...+.+. +.+ .+++++. .+|
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~----------~~d-~~~~~~l~~~---l~~-~GI~i~~~~~v 86 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS----------GFE-KQMAAIIKKR---LKK-KGVEVVTNALA 86 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST----------TSC-HHHHHHHHHH---HHH-TTCEEEESEEE
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecceecc----------ccc-chhHHHHHHH---HHh-cCCEEEcCCEE
Confidence 36899999999999999999999999999999987421 111 1222333332 333 5787665 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEc
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViA 177 (499)
+.++...+.+.+....++ +..++++|.|++.
T Consensus 87 ~~i~~~~~~~~v~~~~~g------~~~~i~~D~Vlvs 117 (117)
T d1ebda2 87 KGAEEREDGVTVTYEANG------ETKTIDADYVLVT 117 (117)
T ss_dssp EEEEEETTEEEEEEEETT------EEEEEEESEEEEC
T ss_pred EEEEEcCCEEEEEEEeCC------CEEEEEeEEEEEC
Confidence 899877666555432222 2467999999974
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=6.7e-10 Score=97.24 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=70.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhh--hccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--CVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
++++|+|||||++||+||.+|++.|.+|+|||+.+........... ..+..+... ...+.+.........++.+..+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLT-GPLLMERMHEHATKFETEIIFD 82 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCB-HHHHHHHHHHHHHHTTCEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccc-hHHHHHHHHHHHHhcCcEEecc
Confidence 4579999999999999999999999999999987542211110000 001111110 1111111111122245666777
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010845 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
+|+.++...+.+.+... ...+..+.+++|+|..++
T Consensus 83 ~V~~~~~~~~~~~v~~~----------~~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 83 HINKVDLQNRPFRLNGD----------NGEYTCDALIIATGASAR 117 (190)
T ss_dssp CEEEEECSSSSEEEEES----------SCEEEEEEEEECCCEEEC
T ss_pred eeEEEecCCCcEEEEEe----------eeeEeeeeeeeecceeee
Confidence 89999988876665542 247899999999998764
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.85 E-value=1.7e-10 Score=103.65 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=34.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
..+||+||||||||+++|.++++.|.+|+|||+++.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G 39 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG 39 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 46899999999999999999999999999999987653
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.83 E-value=3.4e-09 Score=85.45 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=65.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++++|||||+.|+.+|..+++.|.+||++|+.+...- .. ..++...+.+. +. ..++.++. .++
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~----------~~-d~~~~~~l~~~---l~-~~gv~~~~~~~v 90 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ----------GA-DRDLVKVWQKQ---NE-YRFDNIMVNTKT 90 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST----------TS-CHHHHHHHHHH---HG-GGEEEEECSCEE
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc----------cc-hhhHHHHHHHH---HH-HcCcccccCcEE
Confidence 46899999999999999999999999999999876421 01 11222223332 22 35676655 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
..+..++..+.+.....+ ++..++++|+|++|+|
T Consensus 91 ~~v~~~~~g~~v~~~~~~-----g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 91 VAVEPKEDGVYVTFEGAN-----APKEPQRYDAVLVAAG 124 (125)
T ss_dssp EEEEEETTEEEEEEESSS-----CCSSCEEESCEEECCC
T ss_pred EEEEEcCCcEEEEEEeCC-----CCeEEEEcCEEEEecC
Confidence 888766665443321111 1234799999999998
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.4e-09 Score=104.66 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCC---------CCCCCce-
Q 010845 289 YATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLP---------KSPGGRI- 352 (499)
Q Consensus 289 ~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~---------~~~~G~i- 352 (499)
...+.+++.|++++++ +|.+|+.+ .|++.||++++||.||+|++...- .+.-.-.++ ....+..
T Consensus 212 ~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 291 (383)
T d2v5za1 212 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILT 291 (383)
T ss_dssp HHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHH
T ss_pred HHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccc
Confidence 3344456779999999 89998764 477889999999999999864221 000000111 1111211
Q ss_pred eeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 353 ~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.....+.. ...+|+.+|+.... ..+.....|+.+|+.+|..|...+.
T Consensus 292 ~~~~~~~~-~~~~~~~~G~~~~~-------~~~g~~~ga~~~g~~~a~~i~~~~~ 338 (383)
T d2v5za1 292 QYGRVLRQ-PVDRIYFAGTETAT-------HWSGYMEGAVEAGERAAREILHAMG 338 (383)
T ss_dssp HHGGGTTC-CBTTEEECSGGGCS-------SSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhcC-CcCceEeccccccc-------cCCcchHHHHHHHHHHHHHHHHHhc
Confidence 12222233 56789999986641 1244567789999999999876653
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.82 E-value=3.2e-10 Score=102.57 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhccC--CCCeEEEEcCCCCcc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~--~g~~V~lie~~~~~~ 98 (499)
+||+|||||||||+||.+|++ .|++|+|||+.+...
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g 39 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF 39 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 589999999999999999976 478999999998754
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.80 E-value=6.9e-09 Score=83.56 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=62.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|||||+.+..... .++ .++...+.+. + ...+++++.+ ++
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~---------~~d-~~~~~~~~~~---l-~~~gv~~~~~~~v 95 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV---------YLD-KEFTDVLTEE---M-EANNITIATGETV 95 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT---------TCC-HHHHHHHHHH---H-HTTTEEEEESCCE
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccccc---------ccc-hhhHHHHHHH---h-hcCCeEEEeCceE
Confidence 468999999999999999999999999999998764211 011 1122223332 2 3367887764 88
Q ss_pred EEEECCCCEEE-EeeecCccccCCCceeeeeCCeEEEcC
Q 010845 141 AGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 141 ~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
+.++.+.+... +.+ + .++++|.+|+|.
T Consensus 96 ~~i~~~~~~~~v~~d---g--------~~i~~D~vi~aI 123 (123)
T d1nhpa2 96 ERYEGDGRVQKVVTD---K--------NAYDADLVVVAV 123 (123)
T ss_dssp EEEECSSBCCEEEES---S--------CEEECSEEEECS
T ss_pred EEEEcCCCEEEEEeC---C--------CEEECCEEEEEC
Confidence 88887654222 222 2 489999999984
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.80 E-value=6.2e-09 Score=95.72 Aligned_cols=126 Identities=26% Similarity=0.412 Sum_probs=82.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
.++|||||+.|+.+|..+++.+ .+|.++++..+-.
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G--------------~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~ 68 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHN--------------AKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGF 68 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccc
Confidence 5899999999999999999988 8999999754310
Q ss_pred ----CCC------------HHHHHHHHHHHHhCCCEEEeC--ceEEEeCCeEEE-------------CCCcEEeeeEEEE
Q 010845 281 ----SFD------------DRLRHYATTQLSKSGVRLVRG--IVKDVDSQKLIL-------------NDGTEVPYGLLVW 329 (499)
Q Consensus 281 ----~~~------------~~~~~~~~~~l~~~gV~v~~~--~v~~v~~~~v~~-------------~~g~~i~~D~vi~ 329 (499)
.++ ..+.+...+.|++.||+++.+ +..+. +.+.. .+++++.+|.||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~--~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiI 146 (259)
T d1onfa1 69 DTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILI 146 (259)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEE
T ss_pred cchhhhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccc--cccccccceeccccccCccceEEEeeeeEEE
Confidence 000 112233455678899999987 22221 11111 1345799999999
Q ss_pred cCCCCcch---hcccCCCC----CCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010845 330 STGVGPST---LVKSLDLP----KSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 330 a~G~~p~~---~~~~~~l~----~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
|||.+|.. ....++++ .+.++.+.+|+..++ ...++|++||++.
T Consensus 147 ATGs~P~~~~~~~~~~~l~~~~i~ts~~~~~~d~~~~t-~Vig~gaiGdv~~ 197 (259)
T d1onfa1 147 AVGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQRT-SVNNIYAVGDCCM 197 (259)
T ss_dssp CCCCCBCCBCCTTTTSSCTTTTCCBSSSCEEECTTCBC-SSSSEEECSTTEE
T ss_pred ecCCCCccccccccccccccceeeecccccccccCCce-eEeeEEEEEEeee
Confidence 99999931 12222221 245678899988888 8999999999985
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.78 E-value=7e-09 Score=96.09 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCCCCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (499)
+..+...+.+.+++.|++++.+ +|.+++.+ +|.+++| ++.||.||+|+|.....+++.+|+..
T Consensus 150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~ 217 (276)
T d1ryia1 150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN 217 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred cccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCc
Confidence 3567777888889999999998 89999764 4666665 79999999999999988888888754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.76 E-value=9e-09 Score=82.15 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=61.0
Q ss_pred CCcEEEECCchHHHHHHHh---ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-
Q 010845 62 KPRVVVLGSGWAGCRLMKG---IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL- 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~---L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (499)
+++|+|||||+.|+.+|.. +++.|.+|+++++.+...- ..+ .++...+.+. +. ..+++++.
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~----------~~d-~~~~~~~~~~---l~-~~GI~v~~~ 82 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR----------GFD-SELRKQLTEQ---LR-ANGINVRTH 82 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST----------TSC-HHHHHHHHHH---HH-HTTEEEEET
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc----------ccc-chhhHHHHHH---Hh-hCcEEEEcC
Confidence 3689999999999999865 4556899999999876421 011 1122223332 33 36788776
Q ss_pred EEEEEEECCCC-E--EEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 138 SHCAGIDTDNH-V--VHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 138 ~~v~~id~~~~-~--v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
.+++.|..... . +.+++ + .+++||.+|+|+|
T Consensus 83 ~~v~~i~~~~~g~~~v~~~~---g--------~~i~~D~Vi~a~G 116 (117)
T d1feca2 83 ENPAKVTKNADGTRHVVFES---G--------AEADYDVVMLAIG 116 (117)
T ss_dssp CCEEEEEECTTSCEEEEETT---S--------CEEEESEEEECSC
T ss_pred CEEEEEEECCCCEEEEEECC---C--------CEEEcCEEEEecC
Confidence 47888875432 2 33332 2 4799999999999
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=5.7e-09 Score=84.24 Aligned_cols=87 Identities=24% Similarity=0.375 Sum_probs=65.6
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHH-hCCCEEEeC-c
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS-KSGVRLVRG-I 305 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~-~~gV~v~~~-~ 305 (499)
.+.|+|+|||||.+|+|.|.+|++.. .+|+++++++-+.. .+. ..+.+. ..+|+++++ .
T Consensus 28 ~~gk~V~VvGgG~sA~~~A~~L~~~a--------------~~V~li~r~~~~~~-~~~----~~~~~~~~~~I~v~~~~~ 88 (126)
T d1fl2a2 28 FKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMKA-DQV----LQDKLRSLKNVDIILNAQ 88 (126)
T ss_dssp GBTCEEEEECCSHHHHHHHHHHHTTB--------------SEEEEECSSSSCCS-CHH----HHHHHHTCTTEEEESSEE
T ss_pred cCCceEEEEeCCHHHHHHHHhhhccC--------------CceEEEeccccccc-ccc----cccccccccceeEEcCcc
Confidence 34579999999999999999999886 89999999754432 232 233344 457999999 8
Q ss_pred eEEEeCC-----eEEECC---C--cEEeeeEEEEcCCC
Q 010845 306 VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGV 333 (499)
Q Consensus 306 v~~v~~~-----~v~~~~---g--~~i~~D~vi~a~G~ 333 (499)
+.++.++ ++++.| | +++++|.+++++|.
T Consensus 89 v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 89 TTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp EEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred eEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 9998764 355543 4 46999999999983
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.74 E-value=4.4e-09 Score=84.65 Aligned_cols=88 Identities=18% Similarity=0.313 Sum_probs=61.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (499)
++|+|||||+.|+.+|..|++.|.+||||++.+.+. + ++ .++...+.+. +.+ .+++++.+ ++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~--~---------~d-~~~~~~~~~~---l~~-~GV~~~~~~~v~ 96 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL--G---------LD-EELSNMIKDM---LEE-TGVKFFLNSELL 96 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT--T---------CC-HHHHHHHHHH---HHH-TTEEEECSCCEE
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc--C---------CC-HHHHHHHHHH---HHH-CCcEEEeCCEEE
Confidence 689999999999999999999999999999987642 1 11 1122222222 333 57887764 677
Q ss_pred EEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC
Q 010845 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (499)
Q Consensus 142 ~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~ 180 (499)
.++.+ .+.. + + ..+++|.+|+|+|.
T Consensus 97 ~~~~~--~v~~-~---~--------~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 97 EANEE--GVLT-N---S--------GFIEGKVKICAIGI 121 (122)
T ss_dssp EECSS--EEEE-T---T--------EEEECSCEEEECCE
T ss_pred EEeCC--EEEe-C---C--------CEEECCEEEEEEEe
Confidence 77543 3332 2 1 48999999999994
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.73 E-value=5.7e-09 Score=98.26 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=63.1
Q ss_pred CCEEEeC-ceEEEeCC----------eEEEC-----CCcEEeeeEEEEcCCCCcchhcc----cCCCCC---------CC
Q 010845 298 GVRLVRG-IVKDVDSQ----------KLILN-----DGTEVPYGLLVWSTGVGPSTLVK----SLDLPK---------SP 348 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~----------~v~~~-----~g~~i~~D~vi~a~G~~p~~~~~----~~~l~~---------~~ 348 (499)
+.+++++ +|++|..+ .+... +++++++|.||+|++...-.-+. ...+.. +.
T Consensus 243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
T d1seza1 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY 322 (373)
T ss_dssp TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence 5567777 77777421 23322 34578999999998743211000 000100 11
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
++.+.+++.+++ +.|+||++||+.. +.+...|+.+|..||..|..+++
T Consensus 323 ~~~~~~~~~~~t-~~pglf~aGd~~~----------g~~~~~A~~~G~~aA~~i~~~L~ 370 (373)
T d1seza1 323 DSVLDAIDKMEK-NLPGLFYAGNHRG----------GLSVGKALSSGCNAADLVISYLE 370 (373)
T ss_dssp HHHHHHHHHHHH-HSTTEEECCSSSS----------CSSHHHHHHHHHHHHHHHHHHHS
T ss_pred CcEeecccccCC-CCCCEEEEecCCC----------chhHHHHHHHHHHHHHHHHHHHh
Confidence 122334555677 7899999999984 44688999999999999999886
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.72 E-value=4.9e-07 Score=87.41 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=51.4
Q ss_pred cEEeeeEEEEcCCCCcc---hhcccCCCCC--CCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHH
Q 010845 320 TEVPYGLLVWSTGVGPS---TLVKSLDLPK--SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 394 (499)
Q Consensus 320 ~~i~~D~vi~a~G~~p~---~~~~~~~l~~--~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~ 394 (499)
..+.++..+++.|.+.. .++....+.. ...+.+. .+.....+++..+||+|.+.++. ...=...|+..
T Consensus 199 ~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~---sip~l~~~G~lLVGDAAG~vnP~----~g~GI~~Am~S 271 (380)
T d2gmha1 199 LELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQ---SIPKLTFPGGLLIGCSPGFMNVP----KIKGTHTAMKS 271 (380)
T ss_dssp CEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGG---GCCCCEETTEEECTTTTCCCBTT----TTBCHHHHHHH
T ss_pred ccccccEEEEeeeCCCcchHHHHhhhhhccccccccccc---cccccccCCeeEEeccccccchh----hcCCeeeeecc
Confidence 45668888999998775 2333332221 1111111 01112468999999999865432 13446789999
Q ss_pred HHHHHHHHHHHHH
Q 010845 395 GKYLFSLLNRIGK 407 (499)
Q Consensus 395 g~~aa~~i~~~~~ 407 (499)
|+.||+.+...+.
T Consensus 272 G~lAAeai~~al~ 284 (380)
T d2gmha1 272 GTLAAESIFNQLT 284 (380)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988876
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=1.4e-08 Score=81.52 Aligned_cols=97 Identities=15% Similarity=0.221 Sum_probs=63.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++++|||||+.|+.+|..|++.|.+||||++++.+. | ..+ .++...+.+. +.+ .+++++. .+|
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l--~--------~~d-~ei~~~l~~~---l~~-~GV~i~~~~~v 87 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG--A--------SMD-GEVAKATQKF---LKK-QGLDFKLSTKV 87 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--S--------SSC-HHHHHHHHHH---HHH-TTCEEECSEEE
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc--h--------hhh-hhhHHHHHHH---HHh-ccceEEeCCEE
Confidence 3689999999999999999999999999999988642 1 111 1222233332 333 5777655 578
Q ss_pred EEEECC--CCEEEEeeecCccccCCCceeeeeCCeEEEc
Q 010845 141 AGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (499)
Q Consensus 141 ~~id~~--~~~v~~~~~~~~~~~~~~~~~~i~yd~LViA 177 (499)
+++... ...+.+...+. ..++..++++|+|++|
T Consensus 88 ~~v~~~~~~~~v~~~~~~~----~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 88 ISAKRNDDKNVVEIVVEDT----KTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEEETTTTEEEEEEEET----TTTEEEEEEESEEEEC
T ss_pred EEEEEeCCCcEEEEEEEeC----CCCCeEEEEeCEEEEC
Confidence 887654 33443332111 1123468999999987
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.72 E-value=1.7e-08 Score=81.01 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=62.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|++|++.+.+. +.+ + ..+...+.+. +. ..+++++. .++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l--~~~--------d-~~~~~~~~~~---l~-~~gI~v~~~~~v 86 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK--LIK--------D-NETRAYVLDR---MK-EQGMEIISGSNV 86 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--TCC--------S-HHHHHHHHHH---HH-HTTCEEESSCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh--ccc--------c-cchhhhhhhh---hh-ccccEEEcCCEE
Confidence 4789999999999999999999999999999987542 111 1 1111222222 22 25677665 478
Q ss_pred EEEECCCC--EEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+.++.+.. ...+..... +.+..+++|++++|+|
T Consensus 87 ~~i~~~~~~~~~~~~~~~~------~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 87 TRIEEDANGRVQAVVAMTP------NGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEEECTTSBEEEEEEEET------TEEEEEECSCEEECCC
T ss_pred EEEEecCCceEEEEEEEeC------CCCEEEEcCEEEEEEC
Confidence 78876543 211211111 1235899999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1e-08 Score=84.19 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=65.1
Q ss_pred CCcEEEECCchHHHHHHHhcc----CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGID----TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~----~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
.++|+|||||+.|+.+|..|+ ..|.+|++|++++..... .-+.++...+.+. + ...+++++.
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~----------~~~~~~~~~~~~~---l-~~~GV~~~~ 102 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK----------ILPEYLSNWTMEK---V-RREGVKVMP 102 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT----------TSCHHHHHHHHHH---H-HTTTCEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc----------cCCHHHHHHHHHH---H-HhCCcEEEe
Confidence 368999999999999988885 358999999998864211 0111122222222 2 336788876
Q ss_pred E-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+ .|..++.++..+.+... +| .++++|.+|+|+|
T Consensus 103 ~~~V~~i~~~~~~~~v~l~-~G--------~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 103 NAIVQSVGVSSGKLLIKLK-DG--------RKVETDHIVAAVG 136 (137)
T ss_dssp SCCEEEEEEETTEEEEEET-TS--------CEEEESEEEECCC
T ss_pred CCEEEEEEecCCEEEEEEC-CC--------CEEECCEEEEeec
Confidence 4 78888877776665542 22 4899999999999
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.71 E-value=1.7e-09 Score=97.31 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++||+|||||||||+||.+|++.|.+|+|||+..
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 57999999999999999999999999999999864
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.71 E-value=2.7e-08 Score=79.74 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=60.1
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EEE
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (499)
++++|||||+.|+.+|..|++.|.+||||+++.-+ +. . ..++...+.+. + +..+++++.+ +|+
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l------~~-----~-D~~~~~~l~~~---l-~~~Gv~i~~~~~v~ 84 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL------RG-----F-DQDMANKIGEH---M-EEHGIKFIRQFVPT 84 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS------TT-----S-CHHHHHHHHHH---H-HHTTEEEEESCEEE
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh------cc-----C-CHHHHHHHHHH---H-HHCCCEEEECCEEE
Confidence 58999999999999999999999999999875321 10 1 11122222222 2 3368888764 566
Q ss_pred EEEC----CCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 142 GIDT----DNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 142 ~id~----~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
.+.. ....+.+.....+ .++...++||.|++|+|
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 85 KIEQIEAGTPGRLKVTAKSTN----SEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEECSTTCEEEEEEECTT----SCEEEEEEESEEECCCC
T ss_pred EEEEecCCCccEEEEEEEECC----CCcEEEEECCEEEEEeC
Confidence 5542 2223333221111 12234678999999998
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.70 E-value=8.7e-09 Score=89.30 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=67.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC--CCcccc--cchhhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR--NHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~--~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
..+|||||||++|+.+|..|++.|.+++|++.. +...+. +.......+.............. .......+..
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 78 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDA----YAAQNIQLLG 78 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHH----HHHTTEEEEC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhh----hcccceeeec
Confidence 468999999999999999999998876665544 333322 22232332222222211111111 1112333332
Q ss_pred -EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010845 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 138 -~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
..+..++.+...+...+ ..++.||.+++++|..|..|.+
T Consensus 79 ~~~~~~~~~~~~~v~~~~-----------~~~i~~d~~i~~~G~~~~~~~~ 118 (185)
T d1q1ra1 79 GTQVTAINRDRQQVILSD-----------GRALDYDRLVLATGGRPLIPNC 118 (185)
T ss_dssp SCCEEEEETTTTEEEETT-----------SCEEECSEEEECCCEEEEEECC
T ss_pred cceeeeecccccEEEeec-----------eeEEEeeeeeeeeecccCCCCc
Confidence 36667777777776554 2589999999999988766544
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.70 E-value=6e-09 Score=95.92 Aligned_cols=39 Identities=13% Similarity=-0.007 Sum_probs=35.2
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
.+.+||||||||++|+.+|..+++.|.+|++||+.+.+.
T Consensus 40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG 78 (261)
T d1mo9a1 40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78 (261)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence 346899999999999999999999999999999987653
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.68 E-value=6.5e-08 Score=90.39 Aligned_cols=156 Identities=16% Similarity=0.192 Sum_probs=105.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC--------C-------------C------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS--------S-------------F------ 282 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~--------~-------------~------ 282 (499)
..|+|||+|++|+-+|..|.+.+ .+|+++++. .+-. . .
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G--------------~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~ 73 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELG--------------RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQ 73 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCC--------------CCEEEEEcCCCcccccccCCCCCceeccccccccccccccccC
Confidence 48999999999999999998876 788999874 3210 0 0
Q ss_pred ----------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEe--CC----eEEECCCcEEeeeEEEEcCCCCcchhccc-C
Q 010845 283 ----------DDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKS-L 342 (499)
Q Consensus 283 ----------~~~~~~~~~~~l~~~gV--~v~~~-~v~~v~--~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~-~ 342 (499)
.+++.+++.+..++.++ .+..+ +|+++. ++ .|.+.+++++.+|.||.|+|+-..+.... .
T Consensus 74 ~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~ 153 (298)
T d1w4xa1 74 EWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALF 153 (298)
T ss_dssp HCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHH
T ss_pred CCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCccc
Confidence 13577888888888888 58888 898885 32 68888999999999999999754432111 1
Q ss_pred CCCC-CCCCcee---------eCCCCCCCCCCCeEEec-cccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 343 DLPK-SPGGRIG---------IDEWLRVPSVQDVFAVG-DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 343 ~l~~-~~~G~i~---------vd~~l~~~~~~~Ifa~G-D~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+++. ..+|... .---+.++++||.|.++ --+. .........+..|++++++.|....+
T Consensus 154 ~~~i~g~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~-------~~~~~~~~~~e~q~~~i~~~i~~~~~ 222 (298)
T d1w4xa1 154 KIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSP-------SALSNMLVSIEQHVEWVTDHIAYMFK 222 (298)
T ss_dssp TSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSS-------GGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCc-------cccccHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 1122111 11124467899999974 3321 11134456678889999998877665
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.68 E-value=2.9e-08 Score=78.95 Aligned_cols=93 Identities=12% Similarity=0.185 Sum_probs=60.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++|+|||||+.|+.+|..|++.|.+|+||++.++.. . .. ..++...+.+. +.+ .+++++. .+|
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-~---------~~-d~~~~~~~~~~---l~~-~gV~i~~~~~v 86 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-R---------KF-DESVINVLEND---MKK-NNINIVTFADV 86 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-T---------TS-CHHHHHHHHHH---HHH-TTCEEECSCCE
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-c---------cc-cHHHHHHHHHH---HHh-CCCEEEECCEE
Confidence 4689999999999999999999999999999988642 0 01 11122223322 333 5787765 478
Q ss_pred EEEECC-CCEEEEeeecCccccCCCceeee-eCCeEEEcC
Q 010845 141 AGIDTD-NHVVHCETVTDELRTLEPWKFKI-SYDKLVIAL 178 (499)
Q Consensus 141 ~~id~~-~~~v~~~~~~~~~~~~~~~~~~i-~yd~LViAt 178 (499)
+.++.. ++.+++...+ | ..+ .||.||+|.
T Consensus 87 ~~i~~~~~~~~~v~~~~-G--------~~~~~~D~Vi~AI 117 (117)
T d1onfa2 87 VEIKKVSDKNLSIHLSD-G--------RIYEHFDHVIYCV 117 (117)
T ss_dssp EEEEESSTTCEEEEETT-S--------CEEEEESEEEECC
T ss_pred EEEEEcCCCeEEEEECC-C--------CEEEeCCEEEEeC
Confidence 888643 3334443311 2 233 689999984
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.65 E-value=2.8e-08 Score=93.38 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCCcchhcccCCCCC
Q 010845 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (499)
+..+...+.+.+++.|++++.+ +|+++.. + +|.+++| +++||.||+|+|...+.+++.+++.+
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~l 215 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAV 215 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCC
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCcc
Confidence 4677788888889999999999 8988754 3 3566555 79999999999999888887776544
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.63 E-value=3.6e-09 Score=94.75 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++||||||||+||++||..+++.|.+|+|||++.
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~ 38 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA 38 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35899999999999999999999999999999864
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.63 E-value=1.5e-08 Score=81.55 Aligned_cols=96 Identities=20% Similarity=0.298 Sum_probs=64.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++++|||||+.|+.+|..+++.|.+|||+++++.+.- . .+ .++...+.+. +.+ .+++++. .++
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~--~--------~d-~~~~~~l~~~---l~~-~GI~i~~~~~v 89 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP--T--------MD-AEIRKQFQRS---LEK-QGMKFKLKTKV 89 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST--T--------SC-HHHHHHHHHH---HHH-SSCCEECSEEE
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc--h--------hh-hcchhhhhhh---hhc-ccceEEcCCce
Confidence 36899999999999999999999999999999887431 1 11 1122222322 333 5677664 588
Q ss_pred EEEECCCCEE--EEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 141 AGIDTDNHVV--HCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 141 ~~id~~~~~v--~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
.+++..+..+ .+...+++ ++..+++|+|++|.
T Consensus 90 ~~i~~~~~~~~v~~~~~~~g------~~~~i~~D~vLvAA 123 (123)
T d1dxla2 90 VGVDTSGDGVKLTVEPSAGG------EQTIIEADVVLVSA 123 (123)
T ss_dssp EEEECSSSSEEEEEEESSSC------CCEEEEESEEECCC
T ss_pred EEEEEccCeEEEEEEECCCC------eEEEEEcCEEEEcC
Confidence 8998665543 44432222 24578999999983
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=2.4e-08 Score=85.46 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=66.4
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC----------CC--CCHHHHHHHHHHHHh
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------SS--FDDRLRHYATTQLSK 296 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l----------~~--~~~~~~~~~~~~l~~ 296 (499)
..|+|+|||||+.|++.|..|++.+ .+|+++++.+.+ |. ...++.+++.+.+++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G--------------~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~ 107 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARG--------------HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEV 107 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEECccHHHHHHHHHHHhhc--------------cceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhc
Confidence 4579999999999999999999988 899999986322 11 123567788888899
Q ss_pred CCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcch
Q 010845 297 SGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 337 (499)
.||+++++ .|+. + ....+|.||+|+|..|..
T Consensus 108 ~gV~i~l~~~Vt~---------~-~~~~~d~vilAtG~~~~~ 139 (179)
T d1ps9a3 108 TGVTLKLNHTVTA---------D-QLQAFDETILASGIPNRA 139 (179)
T ss_dssp HTCEEEESCCCCS---------S-SSCCSSEEEECCCEECCT
T ss_pred CCeEEEeCCEEcc---------c-ccccceeEEEeecCCCcc
Confidence 99999998 5531 1 235789999999988763
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.62 E-value=8.3e-09 Score=90.26 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=67.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc--chhhh-----hccCCCCCccccch-hhhccccccCCCe
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP--LLAST-----CVGTLEFRSVAEPI-ARIQPAISREPGS 133 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~--~~~~~-----~~g~~~~~~~~~~~-~~~~~~~~~~~~~ 133 (499)
++||+|||||++|++||.+|++.|.+++|+|+.......+ .+... ..+..... ....+ ..+..+. ...++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~el~~~~~~q~-~~~g~ 82 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGI-LGVELTDKFRKQS-ERFGT 82 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCE-EHHHHHHHHHHHH-HHTTC
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccc-cchHHHHHHHHHH-Hhhcc
Confidence 4799999999999999999999999999999775433221 11100 01111100 01111 1111111 22466
Q ss_pred EEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCC
Q 010845 134 YFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (499)
Q Consensus 134 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~ 181 (499)
.+...+|..++...+.+.+... .....+|.+++++|..
T Consensus 83 ~i~~~~V~~~~~~~~~~~v~~~----------~~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 83 TIFTETVTKVDFSSKPFKLFTD----------SKAILADAVILAIGAV 120 (192)
T ss_dssp EEECCCCCEEECSSSSEEEECS----------SEEEEEEEEEECCCEE
T ss_pred eeeeeeEEecccccCcEEeccc----------ceeeeeeeEEEEeeee
Confidence 7777788899887775555431 2478899999999964
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.56 E-value=3.2e-08 Score=90.72 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+||+|||||++||++|..|++.|++|+|||+++.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 357899999999999999999999999999998754
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.55 E-value=1.8e-08 Score=90.94 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+||+||||||||++||.++++.|++|+|||+.+.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~ 37 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP 37 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 47999999999999999999999999999997653
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=9.7e-09 Score=91.81 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+||+||||||||++||.++++.|.+|+|||++.
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 4899999999999999999999999999999865
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.53 E-value=1.5e-08 Score=90.51 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++||+||||||||++||.++++.|.+|+|||+..
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 4799999999999999999999999999999875
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.51 E-value=1.2e-07 Score=75.44 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=59.4
Q ss_pred CCcEEEECCchHHHHHHHh---ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKG---IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~---L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
+++|+|||||+.|+.+|.. |.+.+.+||||++.+... |.+ ..++...+.+. +.+ .+++++.+
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL--~~~---------d~~~~~~l~~~---l~~-~GV~v~~~ 84 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL--RGF---------DHTLREELTKQ---LTA-NGIQILTK 84 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS--TTS---------CHHHHHHHHHH---HHH-TTCEEEES
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh--ccc---------chHHHHHHHHH---HHh-cCcEEEcC
Confidence 3689999999999999954 455678999999987642 110 11122223332 333 67887764
Q ss_pred -EEEEEECCC-CEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 139 -HCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 139 -~v~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
++++++... +.+.+.. ++| .++++|.+++|.
T Consensus 85 ~~v~~ie~~~~~~~~v~~-~~G--------~~i~~D~Vi~AI 117 (117)
T d1aoga2 85 ENPAKVELNADGSKSVTF-ESG--------KKMDFDLVMMAI 117 (117)
T ss_dssp CCEEEEEECTTSCEEEEE-TTS--------CEEEESEEEECS
T ss_pred CEEEEEEEcCCCeEEEEE-CCC--------cEEEeCEEEEeC
Confidence 788887543 3333332 122 479999999984
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.47 E-value=2.6e-07 Score=74.48 Aligned_cols=86 Identities=17% Similarity=0.290 Sum_probs=64.2
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IV 306 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v 306 (499)
.+.|+|+|||||.+++|.|.+|++.. .+||++++++-+.. .+... .+.+...+|+++++ .+
T Consensus 32 frgk~V~VvGgGdsA~e~A~~L~~~a--------------~~V~li~r~~~~ra-~~~~~---~~l~~~~nI~v~~~~~v 93 (130)
T d1vdca2 32 FRNKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDAFRA-SKIMQ---QRALSNPKIDVIWNSSV 93 (130)
T ss_dssp GTTSEEEEECCSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHHHH---HHHHTCTTEEEECSEEE
T ss_pred hCCCEEEEEcCchHHHHHHHHHhCCC--------------CcEEEEEecccccc-chhhh---hccccCCceEEEeccEE
Confidence 34579999999999999999999887 89999999854443 23222 33345567999999 89
Q ss_pred EEEeCC-------eEEEC---CC--cEEeeeEEEEcC
Q 010845 307 KDVDSQ-------KLILN---DG--TEVPYGLLVWST 331 (499)
Q Consensus 307 ~~v~~~-------~v~~~---~g--~~i~~D~vi~a~ 331 (499)
.++.++ ++.++ ++ +++++|.+++++
T Consensus 94 ~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 94 VEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred EEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 998754 34443 23 579999999874
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.42 E-value=2e-08 Score=78.60 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=52.8
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceE
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVK 307 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~ 307 (499)
.+.|+|+|||+|.||+++|.+|+..+ .+++++.+..-.... ..++... ..+.
T Consensus 30 f~gK~VlVVG~g~Sa~dia~~l~~~a--------------k~v~~~~~r~~~~~~-------------~~~~~~~-~~i~ 81 (107)
T d2gv8a2 30 FVGESVLVVGGASSANDLVRHLTPVA--------------KHPIYQSLLGGGDIQ-------------NESLQQV-PEIT 81 (107)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTS--------------CSSEEEECTTCCSCB-------------CSSEEEE-CCEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHhc--------------CEEEEEEecCccccc-------------cccceec-CCee
Confidence 45679999999999999999998766 666666654211111 1122222 2567
Q ss_pred EEeCC--eEEECCCcEEe-eeEEEEc
Q 010845 308 DVDSQ--KLILNDGTEVP-YGLLVWS 330 (499)
Q Consensus 308 ~v~~~--~v~~~~g~~i~-~D~vi~a 330 (499)
+++.+ .+.+.||+++. .|.||+|
T Consensus 82 ~~~~~~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 82 KFDPTTREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp EEETTTTEEEETTTEEECCCSEEEEC
T ss_pred EEecCCCEEEEcCCCEEeCCCEEEEC
Confidence 77654 59999999886 7999997
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.40 E-value=2.2e-07 Score=83.31 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=25.5
Q ss_pred ceEEEeCCeEEECCCcEEeeeEEEEcCCC
Q 010845 305 IVKDVDSQKLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 305 ~v~~v~~~~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.|+++++++|+++|| ++++|+||+|||+
T Consensus 208 ~I~~~~~~gV~~~dg-~~~~D~VV~ATGf 235 (235)
T d1w4xa2 208 PIETITPRGVRTSER-EYELDSLVLATGF 235 (235)
T ss_dssp CEEEECSSEEEESSC-EEECSEEEECCCC
T ss_pred CCeEEeCCeEEECCC-EEcCCEEEeCCCC
Confidence 588999999999888 5899999999996
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.40 E-value=1.8e-06 Score=76.18 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=65.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--CcC-----CC----C-----------C---HHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EIL-----SS----F-----------D---DRL 286 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~~l-----~~----~-----------~---~~~ 286 (499)
.|+|||||+.|+|.|...++.+ .++.||+.+ .+. |. . . ...
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G--------------~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~ 69 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKG--------------VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAF 69 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHH
T ss_pred cEEEECcCHHHHHHHHHHHHCC--------------CcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhH
Confidence 6999999999999999999988 889999764 111 10 0 0 123
Q ss_pred HHHHHHHHHh-CCCEEEeCceEEEe--CC---eEEECCCcEEeeeEEEEcCCCC
Q 010845 287 RHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 287 ~~~~~~~l~~-~gV~v~~~~v~~v~--~~---~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
...+.+.+.. .+++++.+.|.++. ++ +|++.+|.++.|..||++||.-
T Consensus 70 raQ~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 70 HARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp HHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHHHHHHhhhcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence 3445555544 48999988777763 33 5788999999999999999974
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.40 E-value=1.9e-06 Score=81.15 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=27.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||+|++|+-+|..+++.+ .+|.++++.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G--------------~~V~llEk~ 55 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAG--------------AKVILLEKE 55 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTT--------------CCEEEECSS
T ss_pred eEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 6999999999999999999877 788888864
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.38 E-value=2.8e-07 Score=76.69 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=57.0
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc--CCCCCHHHHHHHHHHHHhCCCEEEeC-ce
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRLRHYATTQLSKSGVRLVRG-IV 306 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~--l~~~~~~~~~~~~~~l~~~gV~v~~~-~v 306 (499)
.++|+|||||++|+|+|..+.+.+. ..|+++++... ++... .....+...+++++.. .+
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA-------------~~V~vi~rr~~~~~~a~~-----~~~~~a~~~~~~~~~~~~~ 106 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGA-------------RRVFLVFRKGFVNIRAVP-----EEVELAKEEKCEFLPFLSP 106 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTC-------------SEEEEECSSCGGGCCSCH-----HHHHHHHHTTCEEECSEEE
T ss_pred CCEEEEECCChhHHHHHHHHHHcCC-------------cceeEEEeCChhhhccch-----hheeecccccceeEecccc
Confidence 3589999999999999999988762 67999988632 22222 2223345678888876 44
Q ss_pred EEEeC--C---eEEE------CCC---------cEEeeeEEEEcCCC
Q 010845 307 KDVDS--Q---KLIL------NDG---------TEVPYGLLVWSTGV 333 (499)
Q Consensus 307 ~~v~~--~---~v~~------~~g---------~~i~~D~vi~a~G~ 333 (499)
.++.. + ++.. ++| .+++||.||+|+|.
T Consensus 107 ~ei~~~~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 107 RKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEecCCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 44432 1 1111 122 36899999999983
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.38 E-value=1.5e-06 Score=82.55 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=66.7
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC----------------------------
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------------------------- 280 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~---------------------------- 280 (499)
.|+|+|||||++|+-+|..|.+.+ ...+|+++|+. .+-.
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~------------~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEK------------AFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVG 71 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT------------CCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHhC------------CCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccc
Confidence 469999999999999999887543 11489999986 3310
Q ss_pred ------------------------------------CC--CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEC
Q 010845 281 ------------------------------------SF--DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN 317 (499)
Q Consensus 281 ------------------------------------~~--~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~ 317 (499)
.+ ...+.+++....+..+..++.+ +|++++.+ .|++.
T Consensus 72 ~~~~~~~~s~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~ 151 (335)
T d2gv8a1 72 PAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYK 151 (335)
T ss_dssp SSSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEE
T ss_pred cccccccccccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEE
Confidence 00 1256677777777778889988 78888643 35554
Q ss_pred CC---c---EEeeeEEEEcCCCCcc
Q 010845 318 DG---T---EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 318 ~g---~---~i~~D~vi~a~G~~p~ 336 (499)
++ + +..+|.||+|+|....
T Consensus 152 ~~~~~~~~~~~~~d~VI~AtG~~s~ 176 (335)
T d2gv8a1 152 GTKAGSPISKDIFDAVSICNGHYEV 176 (335)
T ss_dssp ESSTTCCEEEEEESEEEECCCSSSS
T ss_pred ecCCCCeEEEEEeeEEEEccccccc
Confidence 32 1 4569999999998643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.38 E-value=1.4e-07 Score=87.71 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+|+|||||++||++|..|++.|++|+|||+++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999985
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.36 E-value=1.1e-07 Score=89.02 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=34.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
|||+|||||+|||+||++|++.|++|+|+|+++....
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG 38 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 38 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence 6899999999999999999999999999999987643
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=1.1e-07 Score=86.31 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=35.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..+||||||||++||+||..|++.|++|+|||++++.+.
T Consensus 4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG 42 (297)
T d2bcgg1 4 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG 42 (297)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence 468999999999999999999999999999999987643
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.35 E-value=1.2e-07 Score=85.23 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=64.6
Q ss_pred CcEEEECCchHHHHHHHhccC---CCCeEEEEcCCCCcccc-------c---ch-----hhhhc-----c-CCCCCcccc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFT-------P---LL-----ASTCV-----G-TLEFRSVAE 118 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~-------~---~~-----~~~~~-----g-~~~~~~~~~ 118 (499)
.||+||||||||++||.++++ ++.+|+|||++.. ... | ++ ..... | .....+...
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~-GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~ 80 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI-GGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI 80 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT-THHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC-CceeecccccccEEEEeecchhhhhhhhhhcCCcccccCcee
Confidence 589999999999999987654 4678999998642 111 0 00 00000 0 011111111
Q ss_pred chhh--------------hccccccCCCeEEEEEEEEEEECCC----CEEEEeeecCccccCCCceeeeeCCeEEEcCCC
Q 010845 119 PIAR--------------IQPAISREPGSYFFLSHCAGIDTDN----HVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (499)
Q Consensus 119 ~~~~--------------~~~~~~~~~~~~~~~~~v~~id~~~----~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~ 180 (499)
++.. .........++.++.++...++... +.+.+...+ ++..++++|.+++|||.
T Consensus 81 d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~d-------g~~~~i~ad~viiAtG~ 153 (233)
T d1xdia1 81 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAAD-------GSTSEHEADVVLVATGA 153 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTT-------SCEEEEEESEEEECCCE
T ss_pred eeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecC-------CceeeeecceeeeecCc
Confidence 1100 0111222367888887766665432 244443311 23468999999999999
Q ss_pred CccCCC
Q 010845 181 EASTFG 186 (499)
Q Consensus 181 ~~~~~~ 186 (499)
.|..+.
T Consensus 154 ~p~~~~ 159 (233)
T d1xdia1 154 SPRILP 159 (233)
T ss_dssp EECCCG
T ss_pred cccccc
Confidence 887653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.34 E-value=5.2e-07 Score=85.43 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=60.4
Q ss_pred HhCCCEEEeC-ceEEEeC--CeEE--E----CCCcEEeeeEEEEcCCCCcchhcccC----CCCC---------CCCC-c
Q 010845 295 SKSGVRLVRG-IVKDVDS--QKLI--L----NDGTEVPYGLLVWSTGVGPSTLVKSL----DLPK---------SPGG-R 351 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~--~~v~--~----~~g~~i~~D~vi~a~G~~p~~~~~~~----~l~~---------~~~G-~ 351 (499)
++.|++++.+ +|++|+. +++. + .++++++||.||+|++... ++.+ +++. .... .
T Consensus 246 ~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~---l~~i~~~p~l~~~~~~ai~~~~~~~~~ 322 (370)
T d2iida1 246 RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRA---VRLIKFNPPLLPKKAHALRSVFTPYQF 322 (370)
T ss_dssp HHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHH---HTTSEEESCCCHHHHHHHHHCCCTTHH
T ss_pred HhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHH---HhhCccCCCCCHHHHHHHHhcCCcccc
Confidence 3568999998 8998864 3333 2 2356899999999986321 1111 1110 0000 0
Q ss_pred eeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 352 i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
...++.+.. ...+||++||++..+ ......|+..|..||.+|....
T Consensus 323 ~~~~~~~~~-~~g~v~~aGd~~~~~--------~~~~~~a~~sG~~aA~~i~~a~ 368 (370)
T d2iida1 323 QHFSDPLTA-SQGRIYFAGEYTAQA--------HGWIDSTIKSGLRAARDVNLAS 368 (370)
T ss_dssp HHHHHHHHC-CBTTEEECSGGGSSS--------SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhc-ccCCEEEecccccCC--------CcccHHHHHHHHHHHHHHHhhh
Confidence 111222222 346799999988521 2346779999999999987653
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.34 E-value=4.2e-07 Score=85.25 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=33.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~ 50 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV 50 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 357999999999999999999999999999999754
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.33 E-value=1.3e-07 Score=89.67 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=35.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..++||+|||||+|||+||..|++.|++|+|||+++....
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG 67 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 67 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 3457999999999999999999999999999999887543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.5e-07 Score=89.69 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=35.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
+++||||||||+|||+||+.|++.|++|+|+|++++.+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG 42 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence 457899999999999999999999999999999987654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.28 E-value=2.3e-07 Score=87.37 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=35.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
.++|+|||||++||+||..|++.|++|+|+|++++.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG 39 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence 57999999999999999999999999999999998765
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.27 E-value=1.8e-07 Score=81.55 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=34.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~~ 98 (499)
.++||+|||||++||+||.+|++.|+ +|+|||+++...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g 41 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 41 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence 35799999999999999999999999 599999998754
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.27 E-value=2.3e-07 Score=86.54 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=63.1
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEC-CC--cEEeeeEEEEcCCCCcc-hhcccCCCC-------CCCCCc
Q 010845 288 HYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN-DG--TEVPYGLLVWSTGVGPS-TLVKSLDLP-------KSPGGR 351 (499)
Q Consensus 288 ~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~-~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~-------~~~~G~ 351 (499)
....+..++.|++++++ +|++|+.+ .+++. ++ ++++||.||+|+|.... .++..+.-+ ....|.
T Consensus 223 ~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~ 302 (347)
T d2ivda1 223 VLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGH 302 (347)
T ss_dssp HHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTH
T ss_pred HHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCc
Confidence 33444455568999999 89999754 34443 33 46899999999985422 233222100 011121
Q ss_pred ---eeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 352 ---IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 352 ---i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+...+...+ +.|++|++||... +.....|+++|..+|+.|.
T Consensus 303 ~~~~~~~~~~~~-~~p~~~~~G~~~~----------g~~~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 303 LERVAAIDAALQ-RLPGLHLIGNAYK----------GVGLNDCIRNAAQLADALV 346 (347)
T ss_dssp HHHHHHHHHHHH-TSTTEEECSTTTS----------CCSHHHHHHHHHHHHHHHC
T ss_pred ccceeccccccc-CCCCEEEeccccc----------CCCHHHHHHHHHHHHHHhh
Confidence 111111223 7899999999874 2235568889999888763
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.27 E-value=2.5e-07 Score=84.30 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++||||||||++||++|+.|+++|++|+|||++.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45789999999999999999999999999999874
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=2.1e-07 Score=87.04 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=35.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
|.+|||||||++||++|+.|++.|++|+|||++++.+..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~ 39 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN 39 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence 478999999999999999999999999999999986543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.24 E-value=5.1e-07 Score=83.12 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=32.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCc
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~ 97 (499)
.||+|||||+|||++|..|++.|+ +|+|+|+++.+
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 589999999999999999999996 89999998764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.18 E-value=5e-07 Score=84.13 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=28.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||+|++|+.+|..|++.+ .+|+++|+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G--------------~~V~vlE~~ 32 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRG--------------TDAVLLESS 32 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTT--------------CCEEEECSS
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecC
Confidence 7999999999999999999877 899999986
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=1.9e-06 Score=74.00 Aligned_cols=33 Identities=21% Similarity=0.090 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+||+||||||+|++||.++++.|.+|+|||++.
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~ 34 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF 34 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence 689999999999999999999999999999863
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.12 E-value=1.2e-06 Score=78.82 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
+++|||||||||||++||.++++.|. .|+|+|+...
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~ 38 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH 38 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence 56899999999999999999998876 5999998764
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=5.2e-07 Score=80.72 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
+++||+||||||||++||.+|++.|.+|+|||+++.+.
T Consensus 4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~G 41 (233)
T d1v59a1 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLG 41 (233)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcc
Confidence 46899999999999999999999999999999987653
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.04 E-value=1.1e-05 Score=66.83 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~ 97 (499)
..+|||||||.+|+-+|..+.+.|.+ |++|.+++..
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~ 81 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV 81 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence 46899999999999999999888865 8899887643
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.03 E-value=9.8e-07 Score=78.86 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+||+|||||||||+||.+|++.|++|+|||+.+..
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~ 41 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 589999999999999999999999999999998754
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.02 E-value=4.5e-05 Score=68.88 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=64.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC------CCHHHHHHHH------------
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRLRHYAT------------ 291 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~------~~~~~~~~~~------------ 291 (499)
+||+|||||++|+-+|..|++.+ .+|+++|+. ..... +.+...+.+.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~G--------------~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~ 70 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDAG--------------VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVP 70 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBC
T ss_pred CcEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccC
Confidence 48999999999999999999887 899999975 33221 1222221111
Q ss_pred --------------------------------HHH-HhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010845 292 --------------------------------TQL-SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 292 --------------------------------~~l-~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
..+ ...++.++.+ ++.+++.+ .++++||+++.+|++|.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~ 150 (265)
T d2voua1 71 SSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGG 150 (265)
T ss_dssp CCEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCT
T ss_pred CCcceeEeccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccc
Confidence 111 1335666666 67676543 467789999999999999998
Q ss_pred Ccc
Q 010845 334 GPS 336 (499)
Q Consensus 334 ~p~ 336 (499)
...
T Consensus 151 ~s~ 153 (265)
T d2voua1 151 ASV 153 (265)
T ss_dssp TCH
T ss_pred ccc
Confidence 775
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=5.4e-06 Score=73.85 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=77.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-----------CCCHHHHHHHHHHHHhCCCE
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------SFDDRLRHYATTQLSKSGVR 300 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-----------~~~~~~~~~~~~~l~~~gV~ 300 (499)
+|+|||+|++|+.+|..|.+.+ .+.+|+++++.+.+. .....+.......+.+.|++
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~------------~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHH------------SRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCA 70 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC------------SSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEE
T ss_pred eEEEECccHHHHHHHHHHHhcC------------CCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCee
Confidence 8999999999999999998753 127999999874221 12335556667778889999
Q ss_pred EEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010845 301 LVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 301 v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
++.+ .|.. + +.+.+ -.-.+|.+++|+|..+.......+........+......+..+.+..+..|+...
T Consensus 71 ~~~~~~v~~---~-~~~~~-l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 140 (230)
T d1cjca2 71 FYGNVEVGR---D-VTVQE-LQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKR 140 (230)
T ss_dssp EEBSCCBTT---T-BCHHH-HHHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHH
T ss_pred EEeeEEeCc---c-ccHHH-HHhhhceEEEEeecccccccccccccccccccccccccceeeccccccccccccc
Confidence 9987 4411 1 11100 0125899999999977532222222222212222222233446788888888764
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.95 E-value=4.6e-05 Score=70.78 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=28.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||+|.+|+-+|.++++.+ .+|+|+++..
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G--------------~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSG--------------AKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCC
Confidence 7999999999999999999977 8899998753
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=97.94 E-value=9.8e-05 Score=69.32 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=67.7
Q ss_pred HHHHHhCCCEEEeC-ceEEE--eCC---eEEE---CCCc--EEeeeEEEEcCCCCcchh----------------cccCC
Q 010845 291 TTQLSKSGVRLVRG-IVKDV--DSQ---KLIL---NDGT--EVPYGLLVWSTGVGPSTL----------------VKSLD 343 (499)
Q Consensus 291 ~~~l~~~gV~v~~~-~v~~v--~~~---~v~~---~~g~--~i~~D~vi~a~G~~p~~~----------------~~~~~ 343 (499)
.+..++.||+++.+ .+.++ +++ ++.. .+|+ ++.++.||+|||--..-+ ....|
T Consensus 165 ~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~~G 244 (336)
T d2bs2a2 165 ANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETG 244 (336)
T ss_dssp HHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTS
T ss_pred HHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhhhhh
Confidence 34445668888877 55444 223 2222 3564 578999999998654211 11223
Q ss_pred -CCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010845 344 -LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 344 -l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
.++..-++|.+|+..++ +.|++|++||++..........-......+...+..+++.+...
T Consensus 245 ~~~l~~~~~iq~~~~~~t-~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~~ 306 (336)
T d2bs2a2 245 IAQLGNMGGIRTDYRGEA-KLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEH 306 (336)
T ss_dssp SSCEECCCEEECCTTSBC-SSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccceeechhhcc-cCCcceeccccccccccccccchhhccchhhhhcchhHHHHHhh
Confidence 23456678999999998 89999999998753211111111233445555666666665543
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=2.6e-06 Score=78.50 Aligned_cols=38 Identities=24% Similarity=0.180 Sum_probs=33.5
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCeEEEEcCCCCccc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~~~~~~~ 99 (499)
..||+|||||+|||++|.+|++ .|++|+|||+++....
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG 71 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 71 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCT
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCC
Confidence 4689999999999999999976 5999999999886543
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=1.5e-05 Score=74.52 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~ 95 (499)
..||||||+|+|||+||.++++. |.+|+|+||..
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~ 40 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 46999999999999999999864 78999999874
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=2.7e-07 Score=86.89 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHhccC--CCCeEEEEcCCCCcccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--~g~~V~lie~~~~~~~~ 100 (499)
..++|+|||||||||+||.+|++ .|++|+|+|+++.+...
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 90 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 90 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcce
Confidence 35789999999999999999985 59999999999876544
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.88 E-value=0.00014 Score=67.76 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||+|.+|+-.|.++++.+ .+|.++++.
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G--------------~~V~vlEK~ 51 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAG--------------ANVILVDKA 51 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 6999999999999999999877 788888764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.82 E-value=2.6e-05 Score=64.79 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=61.5
Q ss_pred CcEEEE--CCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EE
Q 010845 63 PRVVVL--GSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (499)
Q Consensus 63 ~~VvII--GgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (499)
..|+|+ |||+.|+.+|..|++.|.+||||++.+..... . ... ....+.+ .+.+ .+++++. .+
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-----~-----~~~-~~~~~~~---~l~~-~GV~i~~~~~ 104 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-----H-----FTL-EYPNMMR---RLHE-LHVEELGDHF 104 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-----H-----HTT-CHHHHHH---HHHH-TTCEEEETEE
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-----c-----chh-HHHHHHH---HHhh-ccceEEeccE
Confidence 456666 99999999999999999999999998753211 1 011 1112222 2333 5677665 58
Q ss_pred EEEEECCCCEEEEeeecCcccc------------CCCceeeeeCCeEEEcCCC
Q 010845 140 CAGIDTDNHVVHCETVTDELRT------------LEPWKFKISYDKLVIALGA 180 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~------------~~~~~~~i~yd~LViAtG~ 180 (499)
+.+|+.+. +.+.+....... ...+...+++|.+|+|||-
T Consensus 105 v~~i~~~~--v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtgR 155 (156)
T d1djqa2 105 CSRIEPGR--MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 155 (156)
T ss_dssp EEEEETTE--EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE
T ss_pred EEEecCcc--eEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEecC
Confidence 88887654 444332111100 1123356888999998873
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=97.82 E-value=5e-06 Score=78.62 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+||||||||+|||+||.+|++.|.+|+|||+.+.
T Consensus 5 ~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~ 39 (336)
T d2bs2a2 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV 39 (336)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 36899999999999999999999999999999753
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.79 E-value=5.7e-06 Score=78.60 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCcEEEECCchHHHHHHHhcc-----CCCCeEEEEcCCCCcccc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGID-----TSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~-----~~g~~V~lie~~~~~~~~ 100 (499)
..++|+|||||++||++|..|+ +.|++|+|||+++...+.
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~ 50 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYN 50 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcC
Confidence 3489999999999999999995 689999999998765443
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=2.1e-05 Score=65.73 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDV 88 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V 88 (499)
.++|+|||||..|+-+|..+.+.|.++
T Consensus 29 gkrVvVIGgG~~g~d~a~~~~r~G~~~ 55 (162)
T d1ps9a2 29 GNKVAIIGCGGIGFDTAMYLSQPGEST 55 (162)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence 479999999999999999999988653
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.74 E-value=0.00034 Score=63.31 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=54.3
Q ss_pred CCCEEEeC-ceEEEeC--C--eEEECCC----cEEeeeEEEEcCCCCcch--hcccCCCCCCCCCceeeCCCCCCCCCCC
Q 010845 297 SGVRLVRG-IVKDVDS--Q--KLILNDG----TEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQD 365 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~--~--~v~~~~g----~~i~~D~vi~a~G~~p~~--~~~~~~l~~~~~G~i~vd~~l~~~~~~~ 365 (499)
.++.+..+ +++.++. + .+.+.|+ +++.+|++|.|-|..... ....... ............+
T Consensus 119 ~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~~~--------~~~~~~~~~~~~~ 190 (288)
T d3c96a1 119 GQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQR--------PLRDPLPHWGRGR 190 (288)
T ss_dssp CTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTCC--------CCCCCCSCCCBTT
T ss_pred cCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccceeeeeeccccc--------cccccccccccCc
Confidence 46667666 5655542 3 3555554 479999999999987651 1111100 0111112225678
Q ss_pred eEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010845 366 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 366 Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+..+||+++...+.. ..-+..|+..+..++..+.
T Consensus 191 ~~~~gda~h~~~p~~----g~G~~~ai~d~~~l~~~l~ 224 (288)
T d3c96a1 191 ITLLGDAAHLMYPMG----ANGASQAILDGIELAAALA 224 (288)
T ss_dssp EEECTHHHHCCCSST----TCTHHHHHHHHHHHHHHHH
T ss_pred ceecccccceeCCcc----ccchhhhhhhHHHHHHHHh
Confidence 999999997544322 2234457777777666553
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=97.73 E-value=1.1e-05 Score=75.80 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..||||||||+|||++|..|++.|++|+|||+.+..
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~ 58 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP 58 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999998753
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=3e-05 Score=68.58 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.8
Q ss_pred ccccEEEeCcChHHHHHHHHHHH
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSD 251 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~ 251 (499)
..++|+|||+|++|+++|..+.+
T Consensus 38 ~gk~VvVIGgGNVAlD~aR~l~r 60 (225)
T d1cjca1 38 SCDTAVILGQGNVALDVARILLT 60 (225)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHS
T ss_pred cCceEEEECCchhHHHHHHHHhc
Confidence 35799999999999999999975
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.00022 Score=56.47 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=64.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEE-EEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (499)
.++|+|||||-+.+..|..|.+..-+|+||-+.+.+.-.+. ..++ +...++++++ ..++
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~----------------~~~~----~~~~~~I~v~~~~~v 89 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQV----------------LQDK----LRSLKNVDIILNAQT 89 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHH----------------HHHH----HHTCTTEEEESSEEE
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccccc----------------cccc----cccccceeEEcCcce
Confidence 57999999999999999999998779999988775422111 1111 2233567766 4678
Q ss_pred EEEECCCC---EEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
..+..++. .+.+.+..+ ++..+++.|.|+++.|
T Consensus 90 ~~i~G~~~~v~~v~l~~~~t------ge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 90 TEVKGDGSKVVGLEYRDRVS------GDIHNIELAGIFVQIG 125 (126)
T ss_dssp EEEEESSSSEEEEEEEETTT------CCEEEEECSEEEECSC
T ss_pred EEEEccccceeeEEEEECCC------CCEEEEECCEEEEEeC
Confidence 88877643 244554322 3457899999999988
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.64 E-value=8.5e-06 Score=76.44 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+..||||||||+|||+||++|++.|.+|+|||+.+..
T Consensus 18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~ 54 (317)
T d1qo8a2 18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 54 (317)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3579999999999999999999999999999998753
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.62 E-value=1.3e-05 Score=71.46 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
+++||+||||||||++||.++++.|. .|+|+|+..
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~ 37 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM 37 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence 57999999999999999999999876 588888753
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.58 E-value=1.6e-05 Score=75.99 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=33.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.++||||||+|+||+.+|.+|++.|++|+|+|+....
T Consensus 3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999987543
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=1.9e-05 Score=73.52 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=58.7
Q ss_pred HHHHHHhCCCEEEeC-ceEEEe-CC-----------eEEE---CCCc--EEeeeEEEEcCCCCcc---------------
Q 010845 290 ATTQLSKSGVRLVRG-IVKDVD-SQ-----------KLIL---NDGT--EVPYGLLVWSTGVGPS--------------- 336 (499)
Q Consensus 290 ~~~~l~~~gV~v~~~-~v~~v~-~~-----------~v~~---~~g~--~i~~D~vi~a~G~~p~--------------- 336 (499)
+.+.+++.+++++.+ .+.++. ++ ++.. .+++ .+.++.||+|+|-...
T Consensus 144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG 223 (305)
T d1chua2 144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG 223 (305)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence 445567789999887 555542 21 2333 2342 4789999999985432
Q ss_pred -hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010845 337 -TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 337 -~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
.+....|.++..-++|.+|++.++ +.|++||+|+++.
T Consensus 224 ~~mA~~aGa~l~~m~~iq~~~~g~t-~~~g~~a~G~~~~ 261 (305)
T d1chua2 224 IAMAWRAGCRVANCGGVMVDDHGRT-DVEGLYAIGEVSY 261 (305)
T ss_dssp HHHHHHTTCCEECSCEEECCTTCBC-SSBTEEECGGGEE
T ss_pred EeeccccceeeEecceeEECCcccC-CCCCceecccEEE
Confidence 023345777777889999999999 8999999999754
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00025 Score=56.18 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEE-EEEE
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (499)
.++|+|||||-+++..|..|.+..-+|+||-+++.+...+.+. ..+.+ .....++.++ ...+
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~-------------~~~~~----~~~~~~i~~~~~~~v 89 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILI-------------KRLMD----KVENGNIILHTNRTL 89 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHH-------------HHHHH----HHHTSSEEEECSCEE
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHH-------------HHHHH----hhcccceeEecceEE
Confidence 4799999999999999999999888999999887643322211 11111 1122455544 3477
Q ss_pred EEEECCCC---EEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010845 141 AGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 141 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
..|..++. .|++.+...+ ++..+++.|.|+++.|
T Consensus 90 ~~i~G~~~~v~~v~l~~~~~~-----e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 90 EEVTGDQMGVTGVRLRDTQNS-----DNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEEECSSSEEEEEEECCTTC-----CCCEEEECSEEEECSC
T ss_pred EEEECCCCceEEEEEEECCCC-----ceEEEEECCEEEEEeC
Confidence 77776654 3455542221 1225799999999987
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=9e-06 Score=76.73 Aligned_cols=36 Identities=28% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+..||+|||+|+|||+||..++++|.+|+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~ 41 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP 41 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 357999999999999999999999999999999764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.50 E-value=6.6e-06 Score=73.51 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=55.9
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCC---------C--HHHHHHHHHHHH
Q 010845 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSF---------D--DRLRHYATTQLS 295 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~---------~--~~~~~~~~~~l~ 295 (499)
...++|+|||||++|+.+|..|++.+ .+|+++++. ++...+ . ..........+.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G--------------~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESG--------------YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQIT 112 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHH
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhc--------------cceeeEeeccccCCccccccccceeecccccchhHHHHHH
Confidence 45579999999999999999999987 899999986 342211 0 112222222232
Q ss_pred ---hCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcch
Q 010845 296 ---KSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 296 ---~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 337 (499)
..++++.. ......+...+..++.+|.||+|||..+..
T Consensus 113 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~vviAtG~~~~~ 153 (233)
T d1djqa3 113 KLLKKNKESQL----ALGQKPMTADDVLQYGADKVIIATGASECT 153 (233)
T ss_dssp HHHTTCTTCEE----ECSCCCCCHHHHHTSCCSEEEECCCEECCH
T ss_pred HHhhcceeeee----ecccccccchhhhhhccceeeeccCCCccc
Confidence 22222111 111112222233457899999999998763
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.49 E-value=3.4e-05 Score=73.74 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 58 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
....+.+|||||+|++|+.+|.+|++.|++|+|+|+...
T Consensus 3 ~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 3 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp CTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 345678999999999999999999999999999998643
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=3.9e-05 Score=68.24 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=63.7
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---------CC--CCHHHHHHHHHHHHhCCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--FDDRLRHYATTQLSKSGV 299 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---------~~--~~~~~~~~~~~~l~~~gV 299 (499)
.+|+|||+|++|+.+|..|.+.+.. ....+.+|+++++.+.+ |. ....+.+...+.+.+.|+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~-------~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~ 75 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADT-------TEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRF 75 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH-------STTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTE
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCc-------cccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCc
Confidence 4999999999999999999998731 11123689999986321 21 234556666677888999
Q ss_pred EEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 300 RLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++++ .+.. .+.++ .-...+|.+++|+|..+.
T Consensus 76 ~~~~~~~v~~----~~~~~-~~~~~~~~v~~atGa~~~ 108 (239)
T d1lqta2 76 RFFGNVVVGE----HVQPG-ELSERYDAVIYAVGAQSR 108 (239)
T ss_dssp EEEESCCBTT----TBCHH-HHHHHSSEEEECCCCCEE
T ss_pred eEEEEEEecc----ccchh-hhhccccceeeecCCCcc
Confidence 99988 4421 01111 112358999999998765
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.37 E-value=4.1e-05 Score=72.62 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhcc----CCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGID----TSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~----~~g~~V~lie~~~~ 96 (499)
..||||||||+|||+||..|+ +.|++|+|||+.+.
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~ 59 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 59 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence 369999999999999999885 47999999999754
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.36 E-value=0.0014 Score=59.68 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=84.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c--CCC-----CC--------------------
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I--LSS-----FD-------------------- 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~--l~~-----~~-------------------- 283 (499)
+|+|||||++|+-+|..|++.+ .+|+++|+.+ . .+. +.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G--------------~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~ 69 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAG--------------IDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDG 69 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHC
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhc
Confidence 7999999999999999999987 8888888752 1 110 11
Q ss_pred ---------------------------------HHHHHHHHHHHHhCCCEEEeC-c-eEEEeCC----eEEE-CCCc--E
Q 010845 284 ---------------------------------DRLRHYATTQLSKSGVRLVRG-I-VKDVDSQ----KLIL-NDGT--E 321 (499)
Q Consensus 284 ---------------------------------~~~~~~~~~~l~~~gV~v~~~-~-v~~v~~~----~v~~-~~g~--~ 321 (499)
..+.+.+.+.+++.+..++.. . +..+..+ .|++ .+|+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~ 149 (292)
T d1k0ia1 70 LVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149 (292)
T ss_dssp EEESCEEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEE
T ss_pred ccccceEEEecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEE
Confidence 124444555666677666655 3 4444332 3444 3554 5
Q ss_pred EeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 010845 322 VPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSL 401 (499)
Q Consensus 322 i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~ 401 (499)
+.||+||-|.|.+..- -+.++.. .......+.+||++....+.+ ......+...+...+..
T Consensus 150 i~a~~vVgADG~~S~v-R~~i~~~--------------~~~~~~~~~~~~~~~~~~p~~----~~~~n~~~~d~~~l~~~ 210 (292)
T d1k0ia1 150 LDCDYIAGCDGFHGIS-RQSIPAE--------------RMQHGRLFLAGDAAHIVPPTG----AKGLNLAASDVSTLYRL 210 (292)
T ss_dssp EECSEEEECCCTTCST-GGGSCGG--------------GSEETTEEECGGGTEECCGGG----TCHHHHHHHHHHHHHHH
T ss_pred EEeCEEEECCCCCCcc-cceeeec--------------cccccccccceeeeeecCCcc----ccccccccccccccccc
Confidence 7899999999988641 1111110 114567889999986432211 12233344555555554
Q ss_pred HHHHH
Q 010845 402 LNRIG 406 (499)
Q Consensus 402 i~~~~ 406 (499)
+...+
T Consensus 211 ~~~~~ 215 (292)
T d1k0ia1 211 LLKAY 215 (292)
T ss_dssp HHHHH
T ss_pred eeeEe
Confidence 44444
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.34 E-value=4.7e-05 Score=72.60 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|||||+|++|+.+|.+|++.|++|+|+|+...
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 36 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence 3799999999999999999999999999999754
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.33 E-value=5.1e-05 Score=66.60 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred cccEEEeCcChHHHHHHHHHHH
Q 010845 230 LLHCVVVGGGPTGVEFSGELSD 251 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~ 251 (499)
.++|+|||+|++|+++|..+..
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~ 60 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLT 60 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHS
T ss_pred CceEEEECCCchhHhhhhhhcc
Confidence 5799999999999999998863
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.0035 Score=57.46 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=25.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||+|+.|+-.|.++++. .+|.+++...
T Consensus 9 DVvVVG~G~AGl~AA~~a~~~---------------g~V~llEK~~ 39 (305)
T d1chua2 9 DVLIIGSGAAGLSLALRLADQ---------------HQVIVLSKGP 39 (305)
T ss_dssp SEEEECCSHHHHHHHHHHTTT---------------SCEEEECSSC
T ss_pred CEEEECccHHHHHHHHHhhcC---------------CCEEEEECCC
Confidence 799999999999888776542 4799998764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.25 E-value=0.00073 Score=62.49 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=37.6
Q ss_pred eeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010845 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 352 i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.++...++ +.|++|++||++.... |.+...++...++..|+.||+.|.+.++
T Consensus 258 iv~~~~~~~-~~pgl~~~Gdaa~~v~--g~~r~G~t~g~m~~sG~~aA~~i~~~l~ 310 (311)
T d2gjca1 258 VVIHSGAYA-GVDNMYFAGMEVAELD--GLNRMGPTFGAMALSGVHAAEQILKHFA 310 (311)
T ss_dssp HHHHCEECT-TSTTEEECTHHHHHHH--TCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCcEE-ccCCEEEEeeecCccc--CcCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555566 8899999999875432 2222234667788899999999988775
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.25 E-value=1e-05 Score=72.32 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhc
Q 010845 284 DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 339 (499)
..+...+.+.++++|++++..+|+++++ .....+|.||.|+|.....+.
T Consensus 142 ~~~~~~L~~~~~~~G~~~~~~~v~~l~~-------~~~~~~d~vVnctG~~a~~l~ 190 (246)
T d1kifa1 142 RKYLQWLTERLTERGVKFFLRKVESFEE-------VARGGADVIINCTGVWAGVLQ 190 (246)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCCHHH-------HHHTTCSEEEECCGGGHHHHS
T ss_pred HHHHHHHHHHHHHCCCEEEEeEeCCHHH-------hccCCCCEEEECCcccccccC
Confidence 4677788888999999998776655431 123458999999999886543
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.23 E-value=0.0015 Score=51.70 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=63.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEE-EEE
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSH 139 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 139 (499)
+.++|+|||||-+.+..|..|++.--+|+||-+++.+.-.+.+ ..+ +...+++.++ ..+
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~----------------~~~----l~~~~nI~v~~~~~ 92 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIM----------------QQR----ALSNPKIDVIWNSS 92 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHH----------------HHH----HHTCTTEEEECSEE
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhh----------------hhc----cccCCceEEEeccE
Confidence 3579999999999999999999988899999988764322111 112 2234667655 457
Q ss_pred EEEEECCCC-----EEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010845 140 CAGIDTDNH-----VVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 140 v~~id~~~~-----~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
+..|.-+.+ .+.+++..+ ++..+++.|.|+||.
T Consensus 93 v~~i~Gd~~~~~v~~v~l~~~~t------ge~~~l~~dGvFVaI 130 (130)
T d1vdca2 93 VVEAYGDGERDVLGGLKVKNVVT------GDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEEESSSSSSEEEEEEEETTT------CCEEEEECSEEEECS
T ss_pred EEEEEccCCcccEEEEEEEECCC------CCEEEEECCEEEEEC
Confidence 777765432 345555322 345789999999973
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.002 Score=59.95 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||+|+.|+-.|.++++.+ .+|+|++..
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G--------------~~V~lleK~ 39 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSG--------------QTCALLSKV 39 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTT--------------CCCEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHcC--------------CeEEEEeCC
Confidence 6999999999999999999876 678888754
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.15 E-value=0.00029 Score=62.95 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=29.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
++|+|||||.+|+-+|..|++.+ .+|+++++.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G--------------~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKG--------------YSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 58999999999999999999987 899999975
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.0054 Score=56.35 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=64.9
Q ss_pred hCCCEEEeC-ceEEE--eCC---eEE---ECCCc--EEeeeEEEEcCCCCcch----------------hcccCCCCCCC
Q 010845 296 KSGVRLVRG-IVKDV--DSQ---KLI---LNDGT--EVPYGLLVWSTGVGPST----------------LVKSLDLPKSP 348 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v--~~~---~v~---~~~g~--~i~~D~vi~a~G~~p~~----------------~~~~~~l~~~~ 348 (499)
..+|+++.+ .+.++ +++ ++. ..+|+ .+.++.||+|||--..- +....|.++.+
T Consensus 147 ~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa~l~d 226 (311)
T d1kf6a2 147 FPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRD 226 (311)
T ss_dssp CTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEES
T ss_pred cCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcccceee
Confidence 457999988 67665 222 232 24564 46799999999853321 22234555545
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHHH
Q 010845 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV-LPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~-~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
-.+|.++++..+ ..+++|+.|++..-- ..|... .........--++.+++++.....
T Consensus 227 me~iq~~p~~~~-~~~~~~~~~~~~~~g-~~g~n~~~~~~~~e~~~~~~~~~~~~~~~~~ 284 (311)
T d1kf6a2 227 MGGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRLAGEQATERAA 284 (311)
T ss_dssp CCEEECCTTSBC-SSBTEEECGGGEECS-SSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchh-cccCCCcCcceeeee-eEeccccccccccceeecChHHHHHHHHhhc
Confidence 567888888877 789999999987421 111111 122233333445666666655544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.10 E-value=0.00016 Score=61.04 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|||+|..|..+|.+|.+.|++|+|+|++.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 3789999999999999999999999999999974
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00015 Score=54.15 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.++|+|+|.|-+|+++|+.|.+.|.+|+++|.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 347899999999999999999999999999998653
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.04 E-value=0.00016 Score=68.66 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+||||||+||+.+|.+|++.|.+|+|+|+...
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 48999999999999999999999999999999853
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.03 E-value=0.0012 Score=50.37 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..++|+|||+|.+|+-.|..|++..-+++++.+++
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 45899999999999999999998777777776654
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=96.92 E-value=0.005 Score=57.83 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=59.3
Q ss_pred CCEEEeC-ceEEEeC----C---eEEE---CCCc--EEeeeEEEEcCCCCcch-hcccCCCC------------------
Q 010845 298 GVRLVRG-IVKDVDS----Q---KLIL---NDGT--EVPYGLLVWSTGVGPST-LVKSLDLP------------------ 345 (499)
Q Consensus 298 gV~v~~~-~v~~v~~----~---~v~~---~~g~--~i~~D~vi~a~G~~p~~-~~~~~~l~------------------ 345 (499)
|++++++ .|.+|.- . +|++ .+|+ ++.++.||+|.|..-.+ ++...++.
T Consensus 232 ~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~~g 311 (379)
T d2f5va1 232 RFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPSLG 311 (379)
T ss_dssp EEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTTTT
T ss_pred CCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccccccc
Confidence 4566666 6666642 1 3443 3354 57899999999975442 32222111
Q ss_pred -----CCCC-CceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010845 346 -----KSPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 346 -----~~~~-G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
.+.. ..-.||+.+|+.+.+|+|++ |+..+|...+ ..|.. ..+.-|..+|++|....
T Consensus 312 ~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~-d~sv~p~~~~--~nPt~--t~~alA~r~a~~i~~~~ 373 (379)
T d2f5va1 312 SHRMGFDEKEDNCCVNTDSRVFGFKNLFLG-GCGNIPTAYG--ANPTL--TAMSLAIKSCEYIKQNF 373 (379)
T ss_dssp BTCBCSCTTTTTCSBCTTCBBTTCSSEEEC-SGGGCCSCCC--SCSHH--HHHHHHHHHHHHHHHHC
T ss_pred eeecccCCCCCCccCCCCCcccccCCEEEe-CCcccCCccc--cCcHH--HHHHHHHHHHHHHHHhh
Confidence 0111 11378999999899999975 5554544222 22332 34445666777776654
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=96.80 E-value=0.00035 Score=67.06 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=33.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCc
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~ 97 (499)
+.+|+||||||.||+.+|.+|++.+ ++|+|||+.+..
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~ 60 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence 3599999999999999999999987 799999998753
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=96.79 E-value=0.00036 Score=66.79 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~ 96 (499)
+.+|+||||||.||+.+|.+|.+.+ ++|.|||+.+.
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~ 52 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY 52 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 3489999999999999999999865 89999999864
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=96.75 E-value=0.00039 Score=65.68 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+||||||+||+.+|.+|++. ++|+|||+.+.
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~ 59 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL 59 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence 47999999999999999999986 89999999864
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=96.72 E-value=0.0024 Score=51.33 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEe-C-----cChHHHHHHHHHHHHHHHHHHHhcCCCCCceEE
Q 010845 197 LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV-G-----GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHV 270 (499)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVv-G-----gG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~V 270 (499)
.....++.++++++.. | +.+.++++. . .+....|+|..+.++.. ..+.+++.+|
T Consensus 14 ~~~~~~~~~L~~~l~~-~-------------~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr------~~g~r~kv~i 73 (141)
T d1fcda2 14 WKAGEQTAILRKQLED-M-------------ADGGTVVIAPPAAPFRCPPGPYERASQVAYYLK------AHKPMSKVII 73 (141)
T ss_dssp SSCSHHHHHHHHHHHH-S-------------CTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHG------GGCSCCCEEE
T ss_pred ecccHHHHHHHHHHHh-c-------------ccCCeEEEecCCCCccCCchHHHHHHHHHHHHH------HcCCCCcEEE
Confidence 3455678888888742 2 112245443 2 23556888887776541 1233333444
Q ss_pred EEEeCCC-cCCCCCHHHHHHHHHHHHhCCCEEEeC---ceEEEeC--CeEEECCCcEEeeeEEEEcC
Q 010845 271 TLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRG---IVKDVDS--QKLILNDGTEVPYGLLVWST 331 (499)
Q Consensus 271 tlv~~~~-~l~~~~~~~~~~~~~~l~~~gV~v~~~---~v~~v~~--~~v~~~~g~~i~~D~vi~a~ 331 (499)
+...... ..+.+.+.+.+.+.+.++++||+++.+ .+.+++. ..+++.+|+++++|++++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vvP 140 (141)
T d1fcda2 74 LDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIP 140 (141)
T ss_dssp ECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEECC
T ss_pred EecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeCC
Confidence 4333322 222233455666777778899999987 4777764 47888999999999998753
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.59 E-value=0.00067 Score=57.30 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 689999999999999999999999999999965
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.42 E-value=0.00081 Score=53.57 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|+|+|.-|...|..|.+.|++|++||+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 479999999999999999999999999999975
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.40 E-value=0.0012 Score=54.23 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++-+|+|||+|.+|+.|+..+.+.|.+|+++|.+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 35689999999999999999999999999999874
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.38 E-value=0.0013 Score=54.66 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+-+|+|||||.+|+.||..+.+.|..|+++|.+..
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 46899999999999999999999999999998754
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0013 Score=54.34 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+||+|||+|.-|...|..|.+.|++|+++++++.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 4899999999999999999999999999998764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.00086 Score=54.74 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=31.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+.++|+|||||..|+.-|..|.+.|.+|+||.++
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4589999999999999999999999999999765
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.14 E-value=0.0018 Score=49.86 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=32.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||..|..-|+.|.+.|.+|+++++..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 45799999999999999999999999999998765
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.85 E-value=0.089 Score=48.49 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=29.6
Q ss_pred CCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010845 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 362 ~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
..+++|++||+... .| ......+...++.+++++...+..
T Consensus 284 ~~~gl~~~g~~~~~---~g----~rf~~~~~~~g~~a~~~~~~~i~~ 323 (356)
T d1jnra2 284 TVKGLFAIGDCAGA---NP----HKFSSGSFTEGRIAAKAAVRFILE 323 (356)
T ss_dssp SSBTEEECGGGBCS---CC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhcCC---cc----ccCccccccccchhHHHHHHHHHc
Confidence 57899999998742 11 344566788899999998887763
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.83 E-value=0.0021 Score=51.07 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++++|||+|..|..+|..|.+.|++|++||+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 579999999999999999999999999999975
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0048 Score=47.20 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=32.4
Q ss_pred CCCcEEEECCc-----------hHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSG-----------WAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG-----------~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|+|||+| +++..|++.|++.|+++++|..++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 46799999998 6888999999999999999998875
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.76 E-value=0.0026 Score=54.63 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||.|+.|+..|..|++.|++|+.+|.+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 479999999999999999999999999999874
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0046 Score=57.20 Aligned_cols=34 Identities=29% Similarity=0.561 Sum_probs=30.6
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
..+|+|||+|.+|+-+|..|++.+ .+|+++|+.+
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G--------------~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFG--------------MDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTT--------------CEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCC
Confidence 348999999999999999999887 8999999863
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=95.52 E-value=0.011 Score=51.26 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.++|+|||+|-+|+-+|..|.+.+.+++++-+...
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence 458999999999999999999988888777765543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0045 Score=52.51 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
-++|.|||+|.-|...|..++..|++|+++|+++.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 36899999999999999999999999999998753
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=95.37 E-value=0.018 Score=51.61 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=28.4
Q ss_pred ccEEEeCcChHHHHHHHHHHH-HHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~-~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
..|+|||+|++|+.+|..|++ .+ .+|+++++.
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G--------------~~V~vlE~~ 66 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPN--------------VQVAIIEQS 66 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTT--------------SCEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHHccC--------------CeEEEEecC
Confidence 379999999999999999976 36 899999976
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.35 E-value=0.0057 Score=56.31 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=30.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
|+|+|||||++|+-+|..|++.+ .+|+++|++.
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~G--------------~~V~viEk~~ 35 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEKG--------------HQVHIIDQRD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--------------CCEEEEECCC
Confidence 69999999999999999999876 8999999874
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.35 E-value=0.0037 Score=52.90 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=32.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.+.||+|||+|.-|.+.|..|++.|++|+|+++++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 345689999999999999999999999999999864
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.10 E-value=0.011 Score=47.88 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCCCcEEEEC-CchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIG-gG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+++|.||| .|--|...|+.|++.|++|+++|++.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 3467999999 69999999999999999999999875
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.08 E-value=0.007 Score=50.99 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
-++|.|||+|.-|...|..++..|++|+++|+++.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46899999999999999999999999999999753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.98 E-value=0.0073 Score=53.40 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=28.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce-EEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~ 277 (499)
+|+|||||++|+-+|..|++.+ . +|+++|+.+
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G--------------~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAG--------------ITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTT--------------CCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCC--------------CCcEEEEECCC
Confidence 7999999999999999999876 5 699999863
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.98 E-value=0.024 Score=47.12 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=50.4
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 309 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v 309 (499)
|+++|||+|..|.-+|..|++.+ .+|+++++.+ +-. +.+++.+...... .....
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G--------------~~V~~~~r~~-------~~~----~~~~~~~~~~~~~~~~~~~ 56 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKG--------------QSVLAWDIDA-------QRI----KEIQDRGAIIAEGPGLAGT 56 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSCH-------HHH----HHHHHHTSEEEESSSCCEE
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CEEEEEECCH-------HHH----HHHHHcCCCchhhhhhhhh
Confidence 58999999999999999999987 8999998752 111 2233444443332 33333
Q ss_pred eCCeEEECCCcE--EeeeEEEEcCCCCc
Q 010845 310 DSQKLILNDGTE--VPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~--i~~D~vi~a~G~~p 335 (499)
......+.+-.+ -++|++|+|+....
T Consensus 57 ~~~~~~~~~~~e~~~~aD~iii~v~~~~ 84 (184)
T d1bg6a2 57 AHPDLLTSDIGLAVKDADVILIVVPAIH 84 (184)
T ss_dssp ECCSEEESCHHHHHTTCSEEEECSCGGG
T ss_pred hhhhhhhhhhHhHhcCCCEEEEEEchhH
Confidence 322233333211 25899999985443
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.011 Score=45.76 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=32.6
Q ss_pred CCCCcEEEECCch-----------HHHHHHHhccCCCCeEEEEcCCCC
Q 010845 60 NEKPRVVVLGSGW-----------AGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~-----------aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+.++|+|||+|+ ++..|++.|++.|+++++|..++.
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 4568999999985 788899999999999999998875
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=94.91 E-value=0.01 Score=48.23 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
.+++||+|||+|..|.++|..|...++ +++|+|.++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~ 42 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG 42 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence 356899999999999999988877664 8999997764
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.80 E-value=0.01 Score=47.88 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=30.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
....||.|||+|..|.++|+.|...+. ++.|+|.++
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 456799999999999999999987664 799999764
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.77 E-value=0.0082 Score=48.29 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~ 95 (499)
+++||+|||+|..|.++|..|...+ -+++|+|.+.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 3579999999999999999998876 4899999864
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.71 E-value=0.022 Score=43.44 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=50.4
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|||||.+|..-|..|.+.+ .+|+++... ..+++ .+..++.+++++.....
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~g--------------a~v~v~~~~-----~~~~~----~~~~~~~~i~~~~~~~~-- 66 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAG--------------ARLTVNALT-----FIPQF----TVWANEGMLTLVEGPFD-- 66 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--------------BEEEEEESS-----CCHHH----HHHHTTTSCEEEESSCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecc-----CChHH----HHHHhcCCceeeccCCC--
Confidence 469999999999999999999887 899998753 22333 33445567777654211
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+..-..+++|+.|++-..
T Consensus 67 --------~~dl~~~~lv~~at~d~~ 84 (113)
T d1pjqa1 67 --------ETLLDSCWLAIAATDDDT 84 (113)
T ss_dssp --------GGGGTTCSEEEECCSCHH
T ss_pred --------HHHhCCCcEEeecCCCHH
Confidence 111224788999988765
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.024 Score=43.02 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...+|.|||||.-|...|..+++.|+++.++|+++.
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 346899999999999999999999999999999865
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.57 E-value=0.012 Score=51.22 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=30.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 278 (499)
.|+|||+|.+|+-+|..|++.+ .+|+++|+++.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G--------------~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDG--------------KKVLHIDKQDH 39 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEcCCCC
Confidence 6999999999999999999987 89999999743
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.51 E-value=0.012 Score=48.21 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=30.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+||.|||.|.-|.+.|+.|.+.|++|+++|+++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 479999999999999999999999999999864
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.42 E-value=0.016 Score=49.04 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++|.|||.|+.|+.+|..++ .|++|+.+|-++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS 33 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence 47999999999999998886 5999999998753
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.40 E-value=0.027 Score=45.70 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
.++.||.|||+|-.|.++|+.|...++ ++.|+|.+.
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 445689999999999999999988775 799999764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.015 Score=49.63 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=32.3
Q ss_pred CCCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
|.++||+|+|| |..|-.++.+|.++|++|+++.|++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 35789999996 9999999999999999999998864
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.30 E-value=0.025 Score=45.94 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
+++||.|||+|..|-++|+.|...|+ ++.|+|.+.
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 35799999999999999999988876 799999864
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.28 E-value=0.19 Score=42.71 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCcEEEECCchHHHHHHHhcc--------------------CCCC-eEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGID--------------------TSLY-DVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~--------------------~~g~-~V~lie~~~~ 96 (499)
.++|||||+|-.+|=+|+.|. +.|. +|+++-|+..
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~ 94 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 94 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence 479999999999999988765 4565 5999988753
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.018 Score=40.36 Aligned_cols=36 Identities=25% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+++|.|||||-=|-..+....+.|+++.++|+++..
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 368999999999999999999999999999998653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=93.93 E-value=0.022 Score=45.34 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=28.6
Q ss_pred CcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~ 96 (499)
+||.|||+|..|.++|..|...+. ++.|+|.+..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE 37 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence 589999999999999999987765 7999997764
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=93.88 E-value=0.018 Score=46.01 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=29.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
+||.|||+|..|.++|..|...++ ++.++|.++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~ 36 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence 689999999999999998887664 8999998654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.85 E-value=0.034 Score=45.18 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=57.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~ 310 (499)
.+|+|+|+|..|.+.+.....++ .+|++++.+ ++..+.++..+.. .++....
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lG--------------A~V~~~D~~-------~~~l~~l~~~~~~-~~~~~~~------ 84 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLG--------------AQVQIFDIN-------VERLSYLETLFGS-RVELLYS------ 84 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC-------HHHHHHHHHHHGG-GSEEEEC------
T ss_pred cEEEEECCChHHHHHHHHHhhCC--------------CEEEEEeCc-------HHHHHHHHHhhcc-cceeehh------
Confidence 49999999999999999999988 899999875 2333444444433 2333321
Q ss_pred CCeEEECCCcEEeeeEEEEc---CCCCcchhcccCCCCCCCCCceeeC
Q 010845 311 SQKLILNDGTEVPYGLLVWS---TGVGPSTLVKSLDLPKSPGGRIGID 355 (499)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a---~G~~p~~~~~~~~l~~~~~G~i~vd 355 (499)
+.-.+. ...-++|+||-+ .|.+++.++.+.-+..=+.|.+.||
T Consensus 85 -~~~~l~-~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 85 -NSAEIE-TAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp -CHHHHH-HHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred -hhhhHH-HhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence 100000 011258888877 4655554544333333455667766
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.74 E-value=0.015 Score=46.84 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=29.1
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 275 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~ 275 (499)
.++|+|||||..|.+-|..|.+.+ .+||++.+
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~G--------------A~VtVvap 44 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTG--------------CKLTLVSP 44 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGT--------------CEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeC
Confidence 469999999999999999999887 89999965
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.71 E-value=0.017 Score=48.20 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=29.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
++|.|||+|.-|.+.|..|++.|++|+|+.+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 47999999999999999999999999999763
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.69 E-value=0.02 Score=50.94 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=29.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|.+|++.+ .+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G--------------~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKEN--------------KNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCC
Confidence 6999999999999999999987 8999999864
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.68 E-value=0.018 Score=46.10 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=28.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
+||.|||+|..|.++|..|..++. +++|+|.+.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 689999999999999998887653 799999764
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.019 Score=52.11 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=29.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||++|+-+|..|++.+ .+|++++++.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g--------------~~V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLN--------------KKVLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGT--------------CCEEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCC--------------CcEEEEECCC
Confidence 6999999999999999998876 8999999874
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.48 E-value=0.029 Score=46.96 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=29.9
Q ss_pred CcEEEE-CCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVL-GSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvII-GgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+||.|| |+|--|.+.|..|++.|++|+|.+|++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 479999 669999999999999999999999874
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.031 Score=45.07 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+-+|+|+|.|.-|..++..|.+.|.+|++||.++
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 4579999999999999999999999999999865
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.038 Score=45.47 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=31.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|+|+|=++-+++..|.+.|.+|+|+.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 34789999999999999999999999999998864
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.034 Score=51.17 Aligned_cols=30 Identities=40% Similarity=0.573 Sum_probs=28.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
|+|||+|.+|+-+|..|++.+ .+|+++|+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G--------------~~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSG--------------LNVVVLEAR 31 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTT--------------CCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHhCC--------------CCEEEEecC
Confidence 899999999999999999987 899999975
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=92.77 E-value=0.043 Score=43.66 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
.||.|||+|..|.++|..|...++ ++.|+|.++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 589999999999999999987765 799999764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.73 E-value=0.036 Score=49.63 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=32.8
Q ss_pred CCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++||+|+|| |+.|-..+..|.+.|++|+++++++.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence 4689999998 99999999999999999999998764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.67 E-value=0.1 Score=42.86 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=66.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC---ceE
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG---IVK 307 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~---~v~ 307 (499)
.+|+|+|+|..|...+.....++ ..|++++.+. . .++.+++.+-+++.- ...
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lG--------------A~V~v~D~~~-------~----~~~~l~~l~~~~i~~~~~~~~ 84 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLG--------------AVVMATDVRA-------A----TKEQVESLGGKFITVDDEAMK 84 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSCS-------T----THHHHHHTTCEECCC------
T ss_pred cEEEEEcCcHHHHHHHHHHHHcC--------------CEEEEEeccH-------H----HHHHHHHhhcceEEEeccccc
Confidence 39999999999999999999988 8999998652 1 123455555554421 111
Q ss_pred EEeCC--e-EEEC----CC-------cEEeeeEEEEc---CCCCcchhcccCCCCCCCCCceeeCC------CCCCCCCC
Q 010845 308 DVDSQ--K-LILN----DG-------TEVPYGLLVWS---TGVGPSTLVKSLDLPKSPGGRIGIDE------WLRVPSVQ 364 (499)
Q Consensus 308 ~v~~~--~-v~~~----~g-------~~i~~D~vi~a---~G~~p~~~~~~~~l~~~~~G~i~vd~------~l~~~~~~ 364 (499)
..+.. . -.++ .. ..-++|+||-+ .|.+++.++.+.-+..=+.|.+.||= .+++ +.|
T Consensus 85 ~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Et-s~~ 163 (183)
T d1l7da1 85 TAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL-SEP 163 (183)
T ss_dssp -----------------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTT-CCT
T ss_pred cccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCcccc-CcC
Confidence 11110 0 0000 00 01258999876 35555444433323334567777762 2455 333
Q ss_pred -CeEEecccccc
Q 010845 365 -DVFAVGDCSGY 375 (499)
Q Consensus 365 -~Ifa~GD~a~~ 375 (499)
.+|..-++..+
T Consensus 164 ~~~~~~~gV~~~ 175 (183)
T d1l7da1 164 GKIVVKHGVKIV 175 (183)
T ss_dssp TCEEEETTEEEE
T ss_pred CCEEEECCEEEE
Confidence 37777666643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.62 E-value=0.038 Score=45.34 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=30.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|+|+|+|..|+.++..++..|.+|+++|.++.
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~ 62 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR 62 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence 35899999999999999888888999999998754
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=92.53 E-value=0.04 Score=49.76 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=28.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
+|+|||||.+|+-+|..|++.+. .+|+|++++.
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~-------------~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGW-------------NNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-------------CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-------------CcEEEEeCCC
Confidence 79999999999999999998761 3699999863
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.04 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=29.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
++|+|||+|..|..+|..++..| .+|+++++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G--------------~~V~l~D~~ 36 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATG--------------HTVVLVDQT 36 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred EEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence 59999999999999999999877 899999986
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=92.24 E-value=0.042 Score=49.48 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=32.0
Q ss_pred CCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++.||+|+|| |+.|...+.+|.+.|++|+++.|+..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 4578999997 99999999999999999999988653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.24 E-value=0.16 Score=39.49 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=47.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 311 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~ 311 (499)
+|+|+|+|..|..+|..|.+.+ .+|++++.+ ++..+.+. .+.++.++.+...+.+
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g--------------~~v~vid~d-------~~~~~~~~---~~~~~~vi~Gd~~~~~- 56 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKG--------------HDIVLIDID-------KDICKKAS---AEIDALVINGDCTKIK- 56 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC-------HHHHHHHH---HHCSSEEEESCTTSHH-
T ss_pred EEEEECCCHHHHHHHHHHHHCC--------------CCcceecCC-------hhhhhhhh---hhhhhhhccCcccchh-
Confidence 7999999999999999998877 899999875 33222222 2347776654110000
Q ss_pred CeEEECCCcEEeeeEEEEcCCCCc
Q 010845 312 QKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 312 ~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+..-..-.+|.++.+++...
T Consensus 57 ---~l~~~~i~~a~~vv~~t~~d~ 77 (132)
T d1lssa_ 57 ---TLEDAGIEDADMYIAVTGKEE 77 (132)
T ss_dssp ---HHHHTTTTTCSEEEECCSCHH
T ss_pred ---hhhhcChhhhhhhcccCCcHH
Confidence 000001124788888877654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.23 E-value=0.038 Score=50.95 Aligned_cols=36 Identities=28% Similarity=0.607 Sum_probs=28.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||||++|+-+|..|+..... +.+.+|+++|+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~---------~~G~~v~vlEr~ 44 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQ---------KPDLKVRIIDKR 44 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHH---------STTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccc---------cCCCcEEEEcCC
Confidence 799999999999999999864311 123799999986
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.16 E-value=0.044 Score=48.79 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=28.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||||.+|+-+|.+|++.+ .+|+++++.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G--------------~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQG--------------VKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 5999999999999999999887 899999985
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.16 E-value=0.065 Score=42.92 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=29.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
+.||.|||+|..|.++|..|...+. ++.|+|.++.
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~ 38 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN 38 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 4689999999999999988776654 7999998653
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=92.12 E-value=0.056 Score=42.91 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=29.2
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~ 96 (499)
+||.|||+|..|.++|..|...+ -+++|+|.++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~ 36 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence 47999999999999999998776 38999998764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.11 E-value=0.058 Score=44.12 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=30.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+|+|+|+|+.|+.++..++..|.+|+++|+++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 579999999999999998888899999999865
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.07 E-value=0.21 Score=42.81 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=29.6
Q ss_pred CCcEEEECCchHHHHHHHhccC--------------------CCC-eEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT--------------------SLY-DVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~--------------------~g~-~V~lie~~~~ 96 (499)
.++|||||+|-.+|=+|+.|.+ .|. +|++|.++..
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 5799999999999999988877 354 6999998863
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.059 Score=44.18 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..+|+|+|+|+.|+.++..++..|. +|+++|+++
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 3579999999999999999988898 699999865
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.95 E-value=0.049 Score=44.31 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
|++|-|||-|.-|...|+.|.+.|++|.++|+++
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~ 34 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 34 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence 4689999999999999999999999999999864
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=91.94 E-value=0.05 Score=44.53 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=30.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
.++|+|||+|-++-+++..|.+.|+ +|+|+.|+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 4689999999999999999999997 699998863
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.89 E-value=0.06 Score=44.04 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=29.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
|++|.|||.|--|.+.|+.|.+.|+ +|+.+|++.
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 4579999999999999999998875 688888864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.86 E-value=0.065 Score=43.64 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=30.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|+|+|+|+.|+.++..++..|.+|+++|+++
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 3579999999999999988888899999999864
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=91.84 E-value=0.063 Score=39.05 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=50.1
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEE
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~ 308 (499)
+.|+|+|+|.|-+|..+|..|.+.+ .+|++.+.....+.. +.+ +.++.++.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g--------------~~v~~~D~~~~~~~~---------~~~-~~~~~~~~~~~-- 57 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARG--------------VTPRVMDTRMTPPGL---------DKL-PEAVERHTGSL-- 57 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESSSSCTTG---------GGS-CTTSCEEESBC--
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCC--------------CEEEEeeCCcCchhH---------HHH-hhccceeeccc--
Confidence 3469999999999999999999887 899999875321110 111 22444443310
Q ss_pred EeCCeEEECCCcEEeeeEEEEcCCCCcc-hhc
Q 010845 309 VDSQKLILNDGTEVPYGLLVWSTGVGPS-TLV 339 (499)
Q Consensus 309 v~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~ 339 (499)
.+...-.+|+||+++|..++ +++
T Consensus 58 --------~~~~~~~~d~vi~SPGi~~~~~~~ 81 (93)
T d2jfga1 58 --------NDEWLMAADLIVASPGIALAHPSL 81 (93)
T ss_dssp --------CHHHHHHCSEEEECTTSCTTSHHH
T ss_pred --------chhhhccCCEEEECCCCCCCCHHH
Confidence 00012357999999999887 443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.73 E-value=0.071 Score=42.42 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=28.8
Q ss_pred CcEEEECC-chHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 63 PRVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGg-G~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
+||.|||| |..|.++|..|...+. ++.|+|.++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 47999996 9999999999988874 899999864
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.69 E-value=0.057 Score=44.30 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=29.4
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
|+|+|+|+|.+|.-+|..|.+.+ .+|+++++.
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g--------------~~V~v~dr~ 34 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSG--------------IKVTVACRT 34 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTT--------------CEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEECC
Confidence 69999999999999999998876 899999986
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.18 Score=41.04 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=46.5
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|+|+|-+|--++..|.+.+ .+|+++.|.. +-.+.+.+.+.+.+. +..+
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g--------------~~i~I~nRt~-------~ka~~l~~~~~~~~~------~~~~ 70 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLD--------------CAVTITNRTV-------SRAEELAKLFAHTGS------IQAL 70 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSH-------HHHHHHHHHTGGGSS------EEEC
T ss_pred CCEEEEECCcHHHHHHHHHhcccc--------------eEEEeccchH-------HHHHHHHHHHhhccc------cccc
Confidence 469999999999999999998876 7899998752 223334444444332 1111
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.. .+-....+|+||-||....
T Consensus 71 ~~-----~~~~~~~~dliIN~Tp~G~ 91 (170)
T d1nyta1 71 SM-----DELEGHEFDLIINATSSGI 91 (170)
T ss_dssp CS-----GGGTTCCCSEEEECCSCGG
T ss_pred cc-----ccccccccceeecccccCc
Confidence 11 1111235899999985543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.55 E-value=0.039 Score=46.16 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=30.2
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
..++|+|||+|..|..+|..++..| .+|+++++.
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G--------------~~V~l~D~~ 36 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKG--------------TPILMKDIN 36 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 3469999999999999999998877 899999986
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.54 E-value=0.092 Score=40.60 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=28.8
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCe-EEEEcCCCCc
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDT-SLYD-VVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~-V~lie~~~~~ 97 (499)
+.+|+|+|||-+|.+.+.++.. .+++ |..||.++..
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 4689999999999999988864 4677 6678877653
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.10 E-value=0.08 Score=42.04 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=28.0
Q ss_pred cEEEECC-chHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 64 RVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGg-G~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
||+|||| |..|.++|..|...++ +++|+|.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~ 36 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence 7999996 9999999999998775 699999753
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.08 E-value=0.062 Score=42.61 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=28.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCC--eEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~ 95 (499)
+||.|||+|..|.++|..|...+. ++.|+|.++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 479999999999999998886553 799999764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.86 E-value=0.076 Score=46.99 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=31.0
Q ss_pred CCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++||+|.|| |+.|-..+.+|.++|++|+.+++++
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 357999998 9999999999999999999999864
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.61 E-value=0.094 Score=42.75 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=29.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|+|+|+|..|+.++..++..|.++++++.++
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence 4689999999999999988888999998998764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=90.55 E-value=0.08 Score=42.91 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+||-|||-|.-|...|..|.+.|++|+++|+++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 369999999999999999999999999999864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.50 E-value=0.089 Score=42.13 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+||.|||.|-.|...|+.|.+.|++|+++++.+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS 34 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence 4799999999999999999999999999987653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.45 E-value=0.065 Score=44.44 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=29.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..+|+|+|+|+.|+.++..++..|. +|+++|+++
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCEEEEECCCccchhheeccccccccccccccccc
Confidence 3589999999999999988888897 799999865
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.45 E-value=0.13 Score=42.23 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..+|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence 3579999999999999999998897 699999864
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=90.10 E-value=0.094 Score=42.42 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~ 94 (499)
+.++|+|||+|-.|-.+|..|...|+ +++|+.|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 45789999999999999999999887 59999875
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.87 E-value=0.093 Score=41.44 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=27.7
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~ 95 (499)
.||.|||+|-.|.++|..|...+ -++.|+|.++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 47999999999999998887655 4799999764
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.11 Score=41.99 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
-++|+|+|-|..|-.+|..|+..|.+|+++|..+
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 4789999999999999999999999999999864
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.63 E-value=0.12 Score=40.24 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=49.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~ 310 (499)
|+++|+|.|..|..+|..|.+.+ .+|++++.+ ++.. +.+++.+..++.+...+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--------------~~vvvid~d-------~~~~----~~~~~~~~~~~~gd~~~-- 53 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--------------HEVLAVDIN-------EEKV----NAYASYATHAVIANATE-- 53 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESC-------HHHH----HHTTTTCSEEEECCTTC--
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CeEEEecCc-------HHHH----HHHHHhCCcceeeeccc--
Confidence 47999999999999999999877 899999875 2222 23455676665441100
Q ss_pred CCeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 311 SQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+. +..-..-.+|.+|++++....
T Consensus 54 ~~~--l~~a~i~~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 54 ENE--LLSLGIRNFEYVIVAIGANIQ 77 (134)
T ss_dssp TTH--HHHHTGGGCSEEEECCCSCHH
T ss_pred chh--hhccCCccccEEEEEcCchHH
Confidence 000 000011258899999886543
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=89.55 E-value=0.11 Score=48.09 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=28.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||+|+.|.-+|..|++.+ .+|.++|++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG--------------~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAG--------------VQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCc--------------CeEEEEecC
Confidence 5999999999999999999876 899999986
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=89.38 E-value=0.11 Score=48.22 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=28.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||+|+.|.-+|..|++.+ .+|.++|++
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG--------------~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAG--------------IPTQIVEMG 39 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 6999999999999999999876 899999985
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=89.30 E-value=0.13 Score=42.30 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.+|-|||-|.-|...|+.|.+.|++|+++|+++
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 3579999999999999999999999999999875
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.28 E-value=0.18 Score=41.39 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||+|-++-+++..|.+.+ +|+|+.|+.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence 3478999999999999999998877 999998863
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=0.14 Score=42.38 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=30.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
+.++|+|||+|-+|-+++..|.+.|. +++|+++++.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~ 53 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 53 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence 34799999999999999999998887 6999998653
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.87 E-value=0.11 Score=48.64 Aligned_cols=37 Identities=27% Similarity=0.533 Sum_probs=29.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||||++|.-+|..|+++... -..+.+|.|+|++
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~--------~~~Gl~VlllEK~ 70 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQ--------HEKDLRVCLVEKA 70 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHH--------TTCCCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--------hcCCCEEEEEcCC
Confidence 799999999999999999875321 0123899999986
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=88.82 E-value=0.5 Score=37.41 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=51.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 311 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~ 311 (499)
+++|+|.|..|..++..|.+.+ .+|++++.. ++-.....+.+...|+.++.+....-+
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~--------------~~v~vId~d-------~~~~~~~~~~~~~~~~~vi~Gd~~d~~- 62 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRG--------------QNVTVISNL-------PEDDIKQLEQRLGDNADVIPGDSNDSS- 62 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECC-------CHHHHHHHHHHHCTTCEEEESCTTSHH-
T ss_pred EEEEECCCHHHHHHHHHHHHcC--------------CCEEEEecc-------chhHHHHHHHhhcCCcEEEEccCcchH-
Confidence 8999999999999999998876 789999864 222233334455678988866211100
Q ss_pred CeEEECCCcEEeeeEEEEcCCCCcc
Q 010845 312 QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 312 ~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.++.-..-++|.+|.+++....
T Consensus 63 ---~L~~a~i~~a~~vi~~~~~d~~ 84 (153)
T d1id1a_ 63 ---VLKKAGIDRCRAILALSDNDAD 84 (153)
T ss_dssp ---HHHHHTTTTCSEEEECSSCHHH
T ss_pred ---HHHHhccccCCEEEEccccHHH
Confidence 0000001148899998876543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.74 E-value=0.16 Score=46.80 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.+||+|.|| |+.|-..+..|.++|++|+++|+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 4568999996 9999999999999999999998654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.66 E-value=0.15 Score=41.21 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=30.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|+|+|+|+.|+.++..++..|.+|++++.++
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~ 61 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD 61 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence 3589999999999999998888999999998764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=88.40 E-value=0.12 Score=42.26 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=30.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|+|+|-++-+++..|.+.+.+|+|+.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 35789999999999999999887778899998863
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=88.31 E-value=0.19 Score=41.20 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..+|+|+|+|+.|+.++..++..|. .|+++|.++
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence 3579999999999999999998897 577778765
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.29 E-value=0.05 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHH
Q 010845 232 HCVVVGGGPTGVEFSGELSDFI 253 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~ 253 (499)
+|+|||+|.+|+-+|..|++.+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G 23 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERY 23 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHH
T ss_pred EEEEECchHHHHHHHHHHHHCC
Confidence 7999999999999999999877
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=88.15 E-value=0.2 Score=40.35 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=28.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
||+|+|+|..|.-+|..|++.+ .+|+++.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G--------------~~V~~~~r~ 32 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQG--------------HEVQGWLRV 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHHCC--------------CceEEEEcC
Confidence 7999999999999999999877 899999886
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=88.09 E-value=0.16 Score=41.77 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|-|||-|.-|...|+.|.+.|++|.++|++.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 479999999999999999999999999999864
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=88.05 E-value=0.19 Score=41.87 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|.|| |-.|..+|+.|++.|.+|++++++.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 4578999994 8999999999999999999999974
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=88.05 E-value=0.18 Score=46.27 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=31.7
Q ss_pred CCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++++|+|+|| |+.|-..+..|.+.|++|+++-|+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence 4689999997 9999999999999999999998764
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.71 E-value=0.17 Score=45.67 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=30.0
Q ss_pred CCcEEEECC-chHHHHHHHhccCCCCeEEEEcCC
Q 010845 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
++||+|.|| |+.|-..+.+|.+.|++|+.+|+.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 478999998 999999999999999999999863
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.18 Score=46.03 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=29.2
Q ss_pred CcEEEECC-chHHHHHHHhccCCCCeEEEEcCC
Q 010845 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 63 ~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+||+|+|| |+.|-..+..|.+.|++|+++|+-
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~ 33 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL 33 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 46999998 999999999999999999999864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.10 E-value=0.24 Score=38.18 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=27.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++|+|+|.|..|..++..|. +.+|++||.++.
T Consensus 1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~ 32 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN 32 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence 47999999999999999996 457888887653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.99 E-value=0.25 Score=41.22 Aligned_cols=34 Identities=18% Similarity=0.026 Sum_probs=28.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..+|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~ 60 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 60 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence 4589999999999999888876666 688888764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=86.82 E-value=0.16 Score=40.77 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
-+++||+|=|+.|-.+|.+|+..|.+|+|.|.+|
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 4789999999999999999999999999999865
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.77 E-value=0.26 Score=40.40 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~ 96 (499)
...|+|+|+|..|+.++..++..|. +|+++|.++.
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD 65 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence 3469999999999999999998885 7999998753
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.28 E-value=0.36 Score=38.40 Aligned_cols=33 Identities=12% Similarity=0.330 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+||.|||+|--|-+.|..|.+.++++++.+++.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence 479999999999999999999999999998753
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=86.26 E-value=0.25 Score=45.22 Aligned_cols=34 Identities=29% Similarity=0.203 Sum_probs=31.0
Q ss_pred CCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+||+|.|| |+.|...+..|.+.|++|..+++..
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 479999996 8999999999999999999999864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=86.05 E-value=0.18 Score=43.82 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..+|+|||+|--|-.+|..|++.|+ +++|+|...
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 4689999999999999999999998 699999763
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.75 E-value=0.16 Score=43.26 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.1
Q ss_pred CCCcEEEECC-chHHHHHHHhccCCCCeEEEEc
Q 010845 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVS 92 (499)
Q Consensus 61 ~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie 92 (499)
++++|+|.|| |+.|..++..|.+.|++|++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~ 34 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG 34 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence 4689999996 9999999999999887765543
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=84.99 E-value=0.31 Score=38.29 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=26.7
Q ss_pred cEEEEC-CchHHHHHHHhccCCCC--eEEEEcCC
Q 010845 64 RVVVLG-SGWAGCRLMKGIDTSLY--DVVCVSPR 94 (499)
Q Consensus 64 ~VvIIG-gG~aGl~aA~~L~~~g~--~V~lie~~ 94 (499)
||.||| +|..|-++|..|..+++ ++.|+|..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~ 35 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP 35 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence 799999 69999999999987765 79999853
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.98 E-value=0.54 Score=38.56 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=30.1
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
..++|.|||.|.+|-++|..+..++ .+|+.+++.
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g--------------~~v~~~d~~ 74 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALG--------------AQVRGFSRT 74 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred cCceEEEeccccccccceeeeeccc--------------ccccccccc
Confidence 3579999999999999999999888 899998775
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=84.30 E-value=0.31 Score=39.73 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
...|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus 28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence 3579999999999999999988886 688888764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=83.79 E-value=0.46 Score=41.09 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=30.7
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+.++|+|||.|.+|.++|..|+..|. .++++++.+
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~Gv-------------g~i~lvD~D 63 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAGV-------------GNLTLLDFD 63 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTC-------------SEEEEECCC
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCc
Confidence 34599999999999999999999883 689999876
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=83.63 E-value=0.35 Score=44.58 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=28.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.++|||+|..|.-+|..|++.+ .+|.++|++
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g--------------~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAG--------------KKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhCC--------------CeEEEEEcc
Confidence 6899999999999999999865 789999986
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=83.44 E-value=0.37 Score=40.81 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=29.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~ 94 (499)
...+||+.|+|.||+..|..|.+.+. ++.++|+.
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~ 59 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 59 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence 34789999999999999999877665 59999986
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.97 E-value=0.49 Score=38.35 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=28.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..+|+|+|+|..|+.++..++..+. +|+.+|+++
T Consensus 29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~ 63 (175)
T d1cdoa2 29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP 63 (175)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence 3579999999999999988887765 688888765
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=82.83 E-value=1.4 Score=35.39 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=45.1
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010845 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|+|+|-++--++..|.+.. .+|+++.|. .+-.+.+.+.+...+ + +..+
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~--------------~~i~I~nR~-------~~~a~~l~~~~~~~~-~-----~~~~ 70 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQ--------------QNIVLANRT-------FSKTKELAERFQPYG-N-----IQAV 70 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTT--------------CEEEEEESS-------HHHHHHHHHHHGGGS-C-----EEEE
T ss_pred CCEEEEECCcHHHHHHHHHHcccC--------------ceeeeccch-------HHHHHHHHHHHhhcc-c-----cchh
Confidence 469999999999988888887644 789999886 223344444444332 1 1111
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCc
Q 010845 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
..+ +....++|++|-||....
T Consensus 71 ~~~-----~~~~~~~diiIN~tp~g~ 91 (171)
T d1p77a1 71 SMD-----SIPLQTYDLVINATSAGL 91 (171)
T ss_dssp EGG-----GCCCSCCSEEEECCCC--
T ss_pred hhc-----cccccccceeeecccccc
Confidence 111 111235899999987653
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=82.81 E-value=0.45 Score=42.53 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++||+|.|| |+-|-..+.+|.+.|+.+++++...
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~ 36 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD 36 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence 568999998 9999999999999999988887554
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=82.77 E-value=0.37 Score=38.22 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=28.5
Q ss_pred CcEEEECCchHHHHHHHhccCCC-CeEEEEcCCC
Q 010845 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~ 95 (499)
++|.+||+|--|-+.|..|.+.| ++|.++|+++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 47999999999999999887665 8999998864
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.73 E-value=0.43 Score=42.80 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=30.4
Q ss_pred CcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|.|| |+.|-.++.+|.++|++|+.+++..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 57999998 9999999999999999999999865
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=82.43 E-value=0.42 Score=34.67 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=31.1
Q ss_pred CCCcEEEECCchHHHHH-HHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRL-MKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~a-A~~L~~~g~~V~lie~~~ 95 (499)
..++|-+||-|=+|+++ |..|.++|++|+--|...
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 45789999999999988 899999999999999864
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=82.04 E-value=0.71 Score=36.23 Aligned_cols=33 Identities=27% Similarity=0.205 Sum_probs=26.1
Q ss_pred CcEEEEC-CchHHHHHHHhccC---CCCeEEEEcCCC
Q 010845 63 PRVVVLG-SGWAGCRLMKGIDT---SLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIG-gG~aGl~aA~~L~~---~g~~V~lie~~~ 95 (499)
+||.||| +|..|-++|..|.. ...++.|+|..+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence 4799999 59999999988743 346899999654
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.98 E-value=0.5 Score=42.71 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=31.0
Q ss_pred CCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCCC
Q 010845 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++++|.|| |+.|...+.+|.+.|++|+.+++...
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~ 36 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS 36 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 367888898 99999999999999999999998653
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.83 E-value=0.62 Score=38.18 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..++|.|||.|..|-..|..|...|.+|+.+|+..
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCceEEEeccccccccceeeeeccccccccccccc
Confidence 45789999999999999999999999999999864
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=81.81 E-value=0.43 Score=39.51 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
++|+|+|+|..|.-+|..|++.+ .+|++..++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g--------------~~V~l~~r~ 39 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKC--------------REVCVWHMN 39 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTE--------------EEEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEec
Confidence 37999999999999999998765 789998774
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=81.63 E-value=0.6 Score=32.25 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=28.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010845 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
|+|.|+|||-.|-.++.+...++ .++.+++..
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG--------------~~v~vldp~ 33 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLG--------------IAVWPVGLD 33 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGT--------------EEEEEECTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC--------------CEEEEEcCC
Confidence 58999999999999999998888 899999875
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.27 E-value=0.44 Score=44.28 Aligned_cols=30 Identities=30% Similarity=0.569 Sum_probs=28.4
Q ss_pred CcEEEECC-chHHHHHHHhccCCCCeEEEEc
Q 010845 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVS 92 (499)
Q Consensus 63 ~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie 92 (499)
+||+|.|| |+-|-.++..|.+.|++|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 58999998 9999999999999999999998
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=81.22 E-value=1.4 Score=38.76 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=40.8
Q ss_pred ccEEEeCc-ChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC
Q 010845 231 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (499)
Q Consensus 231 ~~vvVvGg-G~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~ 304 (499)
++|+|.|| |.+|-.++..|.+.+ .+|+.+.|..... ... .......+...+++++.+
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G--------------~~V~~~~R~~~~~--~~~-~~~~~~~~~~~~v~~v~~ 61 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLG--------------HPTYVLFRPEVVS--NID-KVQMLLYFKQLGAKLIEA 61 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT--------------CCEEEECCSCCSS--CHH-HHHHHHHHHTTTCEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--------------CEEEEEECCCccc--chh-HHHHHhhhccCCcEEEEe
Confidence 47999996 999999999998876 7899888763211 122 223345567788988764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.17 E-value=0.46 Score=38.59 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=26.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~ 95 (499)
..+|+|+|+|+.|+.++..++..|.+ |++.|.++
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~ 63 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE 63 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence 45799999999999999888777776 45556543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=81.09 E-value=0.89 Score=40.26 Aligned_cols=36 Identities=11% Similarity=-0.002 Sum_probs=29.1
Q ss_pred CCCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 60 NEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
-+.+.++|-|| |--|.++|+.|++.|++|++.+++.
T Consensus 23 l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~ 59 (294)
T d1w6ua_ 23 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 59 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 44567777775 5667899999999999999999864
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.07 E-value=0.48 Score=44.68 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCC
Q 010845 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~ 95 (499)
..||+|||+|--|..+|+.|...|+ +++|+|.+.
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 3589999999999999999999998 699999763
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.79 E-value=0.47 Score=43.12 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=29.6
Q ss_pred CcEEEECC-chHHHHHHHhccCCCCeEEEEcCC
Q 010845 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 63 ~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+||+|.|| |+.|-..+.+|.+.|++|+.+|.-
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~ 35 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF 35 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence 68999998 999999999999999999999864
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.68 E-value=0.61 Score=42.24 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCCcEEEECC-chHHHHHHHhccCCCCeEEEEcCCC
Q 010845 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGg-G~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+++|+|.|| |+.|-..+.+|.+.|++|+.+|+..
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~ 50 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA 50 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 3568999998 9999999999999999999999744
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=80.62 E-value=1.6 Score=34.15 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=41.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeC
Q 010845 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 311 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~ 311 (499)
+|.+||+|..|--++..|.+.+ ..+|++.++++ + ...+..++.|++...+
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~-------------~~~i~v~~r~~-------~---~~~~l~~~~~~~~~~~------- 51 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQG-------------GYRIYIANRGA-------E---KRERLEKELGVETSAT------- 51 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-------------SCEEEEECSSH-------H---HHHHHHHHTCCEEESS-------
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-------------CCcEEEEeCCh-------h---HHHHhhhhcccccccc-------
Confidence 6899999999999998876543 15788877642 2 2222233457765433
Q ss_pred CeEEECCCcEEeeeEEEEcCC
Q 010845 312 QKLILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 312 ~~v~~~~g~~i~~D~vi~a~G 332 (499)
....-.+|.||+|+-
T Consensus 52 ------~~~v~~~Div~lavk 66 (152)
T d1yqga2 52 ------LPELHSDDVLILAVK 66 (152)
T ss_dssp ------CCCCCTTSEEEECSC
T ss_pred ------cccccccceEEEecC
Confidence 011123799999864
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.36 E-value=0.37 Score=38.40 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=26.0
Q ss_pred CCcEEEECC-chHHHHHHHhccCCC-------CeEEEEcCCC
Q 010845 62 KPRVVVLGS-GWAGCRLMKGIDTSL-------YDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGg-G~aGl~aA~~L~~~g-------~~V~lie~~~ 95 (499)
+.||.|||| |..|.++|..|...+ .++.++|.+.
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~ 44 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP 44 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc
Confidence 468999996 999999999887532 2577777653
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.30 E-value=0.48 Score=39.65 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=27.0
Q ss_pred CCcEEEECC-chHHHHHHHhccCCCC--eEEEEcCC
Q 010845 62 KPRVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGg-G~aGl~aA~~L~~~g~--~V~lie~~ 94 (499)
+++|+|+|| |+.|-..+.+|.+.|+ +|+++.++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~ 37 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK 37 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence 479999999 9999999999988886 45555443
|