Citrus Sinensis ID: 010848
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZR6 | 509 | Inositol transporter 1 OS | yes | no | 1.0 | 0.980 | 0.813 | 0.0 | |
| Q9C757 | 580 | Probable inositol transpo | no | no | 0.685 | 0.589 | 0.597 | 1e-109 | |
| Q9ZQP6 | 580 | Probable inositol transpo | no | no | 0.677 | 0.582 | 0.526 | 2e-99 | |
| O23492 | 582 | Inositol transporter 4 OS | no | no | 0.667 | 0.572 | 0.542 | 1e-96 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.881 | 0.962 | 0.379 | 7e-79 | |
| Q01440 | 547 | Membrane transporter D1 O | N/A | no | 0.871 | 0.795 | 0.369 | 1e-76 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.845 | 0.915 | 0.386 | 9e-76 | |
| P87110 | 557 | Myo-inositol transporter | yes | no | 0.917 | 0.822 | 0.331 | 3e-72 | |
| P30606 | 609 | Myo-inositol transporter | yes | no | 0.889 | 0.729 | 0.335 | 7e-72 | |
| Q96QE2 | 648 | Proton myo-inositol cotra | yes | no | 0.699 | 0.538 | 0.430 | 1e-71 |
| >sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/509 (81%), Positives = 452/509 (88%), Gaps = 10/509 (1%)
Query: 1 MTLTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIK 60
MTLT+ + PGSSGYLD+FP+RRMSYF N Y+LGLTV AGIGGLLFGYDTGVISGALLYIK
Sbjct: 1 MTLTIPNAPGSSGYLDMFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIK 60
Query: 61 DDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA 120
DDFE V QSSFLQETIVSMALVGA++GAA+GGWIND YGRKKATL ADVVF AGAI+MAA
Sbjct: 61 DDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAA 120
Query: 121 APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN 180
APDPYVLI GRLLVGLGVG+ASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVN
Sbjct: 121 APDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVN 180
Query: 181 LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 240
AFT+VPGTWRWMLGVS VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RL
Sbjct: 181 SAFTQVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRL 240
Query: 241 EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT 300
EDEIDHLSAA EEE ++K+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPT
Sbjct: 241 EDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPT 300
Query: 301 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW 360
IVQMAGF SNQLAL LSL VA NA GT+VGIY IDH GRKKLALSSL GVIISL++LS
Sbjct: 301 IVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSV 360
Query: 361 AFISGSSASSS-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419
+F S SS G+YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSAT
Sbjct: 361 SFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSAT 420
Query: 420 VNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWK 479
VNWISNLIVAQTFLT+AE GTG TFLILAGIAVLAV+FVI+FVPETQGLTF EVEQ+WK
Sbjct: 421 VNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWK 480
Query: 480 ERA------WGSSL---NTESLLEHGNSS 499
ERA WGSS N E LLE G+ S
Sbjct: 481 ERAYGNISGWGSSSDSNNMEGLLEQGSQS 509
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Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/345 (59%), Positives = 266/345 (77%), Gaps = 3/345 (0%)
Query: 26 FSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAI 85
+ N YVL L AGIGGLLFGYDTGVISGALLYI+DDF++V+++++LQE IVSMA+ GAI
Sbjct: 23 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAI 82
Query: 86 VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTA 145
VGAA GGW ND GR+ A L+AD +F GAIIMAAAP+P +L++GR+ VGLGVG+AS+TA
Sbjct: 83 VGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTA 142
Query: 146 PVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF 205
P+YI+EASP+++RG LVSTN +IT GQFLSYL+NLAFT+V GTWRWMLG++ +PA++QF
Sbjct: 143 PLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPALLQF 202
Query: 206 VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK---KTVR 262
VLM +PESPRWL+ K +E+A +L +IY +E EI L + E E+ ++ + +
Sbjct: 203 VLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSEKIN 262
Query: 263 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAG 322
+ + K+K +R +AG GLQ FQQF GINTVMYYSPTIVQ+AGF SN+ ALLLSL AG
Sbjct: 263 MIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAG 322
Query: 323 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 367
NA G+I+ IY ID GRKKL + SL GVIISL +L+ F ++
Sbjct: 323 LNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVFYEAAT 367
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Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/344 (52%), Positives = 243/344 (70%), Gaps = 6/344 (1%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
Y++ L + AGIGGLLFGY+TGVI+GALLYIK++F V+ ++LQE IVSM + GAIVGAA
Sbjct: 25 YIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAA 84
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149
GGW ND +GR+ + L+ADV+F GA++M A P+V+ILGRLLVG GVG+AS+T+P+YI
Sbjct: 85 IGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYI 144
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209
+E SP+ +RG LVSTN L+IT GQFLSYL+NLAF PGTWRWMLGVSA+PAIIQF LML
Sbjct: 145 SEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLML 204
Query: 210 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV------RY 263
+PESPRWL+ K ++ +L +IY +E EI L + E + + +
Sbjct: 205 TLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDKL 264
Query: 264 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGT 323
+ +R AG +Q QQF GINTVMYYSPTI+Q AG+ SN+ A+ L+L +G
Sbjct: 265 RGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSGL 324
Query: 324 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 367
NAVG++V + +D +GR+KL + S+ G+I LV+L+ F S+
Sbjct: 325 NAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVFNEASN 368
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Plasma membrane inositol-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 184/339 (54%), Positives = 249/339 (73%), Gaps = 6/339 (1%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
Y++ L + AGIGGLLFGYDTGVISGALL+IK+DF+ V++ ++LQ TIVSMA+ GAIVGAA
Sbjct: 26 YIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAA 85
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149
GGWIND +GR+ + L+ADV+F GAI+MA AP P+V+I+GR+ VG GVG+AS+T+P+YI
Sbjct: 86 VGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYI 145
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209
+EASP+ +RG LVSTN L+IT GQF SYL+NLAF PGTWRWMLGV+ VPAI+QFVLML
Sbjct: 146 SEASPARIRGALVSTNGLLITGGQFFSYLINLAFVHTPGTWRWMLGVAGVPAIVQFVLML 205
Query: 210 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV------RY 263
+PESPRWL+ K ++ +L +IY +E E++ L + E E + + +
Sbjct: 206 SLPESPRWLYRKDRIAESRAILERIYPADEVEAEMEALKLSVEAEKADEAIIGDSFSAKL 265
Query: 264 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGT 323
F + +R AG +Q QQF GINTVMYYSP+IVQ AG+ SN+ A+ LSL +G
Sbjct: 266 KGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGL 325
Query: 324 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 362
NA+G+IV + +D +GR+KL + S+ G+I L++L+ F
Sbjct: 326 NALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILATVF 364
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Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 175/461 (37%), Positives = 272/461 (59%), Gaps = 21/461 (4%)
Query: 23 MSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALV 82
M SN++ L +GG L+GYDTGVISGA+L++K + + ++F + +VS LV
Sbjct: 1 MKKQSNIW---LYFFGALGGALYGYDTGVISGAILFMKKE---LGLNAFTEGLVVSSLLV 54
Query: 83 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIAS 142
GAI+G+ + G + D +GRKKA + A ++F G + +A AP+ V++L R+++GL VG ++
Sbjct: 55 GAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTST 114
Query: 143 VTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAI 202
P+Y++E +P RG L S N LMIT G LSY+VN F + WRWMLG++AVP++
Sbjct: 115 TIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAE-AWRWMLGLAAVPSL 173
Query: 203 IQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR 262
+ + +LFMPESPRWLF ++ KA +L K+ ++ EI + A +++ K
Sbjct: 174 LLLIGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLK--- 230
Query: 263 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAG 322
++F +R A +AG GL QQF G NT++YY+P GF N ++L ++ +
Sbjct: 231 --ELF-DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGF-GNSASILGTVGIGT 286
Query: 323 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA--FISGSSASSSGVYGWIAVI 380
N + T+V I +ID GRK L L AG++ISL++L+ F + A+S W VI
Sbjct: 287 VNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAAS-----WTTVI 341
Query: 381 GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 440
L ++I FA GPV W + E++P RGI G+S + + LIV+ T+ + E +G
Sbjct: 342 CLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIG 401
Query: 441 TGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKER 481
FLI A I ++A +FV V ET+G + E+EQ +++
Sbjct: 402 ISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQDLRDK 442
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q01440|GTR1_LEIDO Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 275/452 (60%), Gaps = 17/452 (3%)
Query: 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWIN 95
+ A +GG LFGYDTGVI+ AL +KD F ++ S+ IV++A+ GA VGA G+I+
Sbjct: 7 LCAALGGFLFGYDTGVINAALFQMKDHF-GFSEHSWQYALIVAIAIAGAFVGAFISGFIS 65
Query: 96 DAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 155
A+GR+ +AD +F G+++M AAP+ V+++ R++VGL +GI+S T PVY+AE +
Sbjct: 66 AAFGRRPCIAVADALFVIGSVLMGAAPNVEVVLVSRVIVGLAIGISSATIPVYLAEVTSP 125
Query: 156 EVRGGLVSTNVLMITSGQFLS---YLVNLAFTEVPGTWRWMLGVSAVPAIIQ-FVLMLFM 211
+ RG + N L +T GQF++ + + FT WR +G+ A+PA++Q F L+ F+
Sbjct: 126 KHRGATIVLNNLFLTGGQFVAAGFTAIMVVFTSKNIGWRVAIGIGALPAVVQAFCLLFFL 185
Query: 212 PESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKE 271
PESPRWL K ++A V K E+D +EL + + Y + +++
Sbjct: 186 PESPRWLLSKGHADRAKAVADKF--------EVDLCEFQEGDELPSVR-IDYRPLM-ARD 235
Query: 272 IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVG 331
+R + +GLQ QQF+GINT+MYYS I+ AGF+ + ++LS+ +A NA+ T V
Sbjct: 236 MRFRVVLSSGLQIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNALFTAVA 295
Query: 332 IYLIDHFGRKKLALSSLAGVIISLVLLS-WAFISGSSASSSGVYGWIAVIGLALYIAFFA 390
I+ +D FGR+++ L S+ G ++ LV+++ F G+ S S V G + + LA+++A +A
Sbjct: 296 IFTVDRFGRRRMLLISVFGCLVLLVVIAIIGFFIGTRISYS-VGGGLFLALLAVFLALYA 354
Query: 391 PGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG 450
PG+G +PW + E++P R ++ NW +N++V+Q F + +G G TF I++G
Sbjct: 355 PGIGCIPWVIMGEIFPTHLRTSAASVATMANWGANVLVSQVFPILMGAIGVGGTFTIISG 414
Query: 451 IAVLAVVFVILFVPETQGLTFLEVEQMWKERA 482
+ L +FV F ET+GLT +++ M+++RA
Sbjct: 415 LMALGCIFVYFFAVETKGLTLEQIDNMFRKRA 446
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Leishmania donovani (taxid: 5661) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 169/437 (38%), Positives = 260/437 (59%), Gaps = 15/437 (3%)
Query: 40 IGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYG 99
+GGLL+GYDTGVISGALL+I +D + ++ + +VSM L+GAI G+A G +D +G
Sbjct: 16 LGGLLYGYDTGVISGALLFINND---IPLTTLTEGLVVSMLLLGAIFGSALSGTCSDRWG 72
Query: 100 RKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 159
R+K + ++F GA+ A + +LI R+++GL VG ++ PVY++E +P+++RG
Sbjct: 73 RRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132
Query: 160 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLF 219
L + N LMI +G L+Y+VN FT WRWM+G++AVPA++ + + FMPESPRWL
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESPRWLV 191
Query: 220 MKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAG 279
+ +E+A +++ +D +E E+ + + E KK+T L V K+K IR L G
Sbjct: 192 KRGSEEEARRIMNITHDPKDIEMELAEMK---QGEAEKKETT--LGVLKAKWIRPMLLIG 246
Query: 280 AGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG 339
GL FQQ GINTV+YY+PTI AG ++ A L ++ + N + I + LID G
Sbjct: 247 VGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASA-LGTMGIGILNVIMCITAMILIDRVG 305
Query: 340 RKKLALSSLAGVIISLVLLSWAFIS-GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 398
RKKL + G+ +SL LS ++ G SAS++ W+ V+ L +YI F+ GPV W
Sbjct: 306 RKKLLIWGSVGITLSLAALSGVLLTLGLSASTA----WMTVVFLGVYIVFYQATWGPVVW 361
Query: 399 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF 458
L E++P + RG G + V +NLIV+ F + +G F++ + I +L+ F
Sbjct: 362 VLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFF 421
Query: 459 VILFVPETQGLTFLEVE 475
VPET+G + E+E
Sbjct: 422 AFYMVPETKGKSLEEIE 438
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itr2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 158/476 (33%), Positives = 268/476 (56%), Gaps = 18/476 (3%)
Query: 34 LTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGW 93
L+ +AGI GLLFGYDTGVISGAL + D V SS +E I S A++ A + GW
Sbjct: 84 LSAVAGISGLLFGYDTGVISGALAVLGSDLGHV-LSSGQKELITSATSFAALISATTSGW 142
Query: 94 INDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEAS 153
+ D GRK+ L AD +F G++IMAA+ + ++++GR +VG G+G+ S+ P+YI E +
Sbjct: 143 LADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELA 202
Query: 154 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 213
P+ +RG LV V+ IT GQ ++Y +N AF V WR M G+ A PA+ Q + + + PE
Sbjct: 203 PARLRGRLVIIYVVFITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFWTPE 262
Query: 214 SPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK--KTVRYLDVFKSKE 271
SPR+L + EK +LS+I+ A+ EI + + +E ++ + ++ F S +
Sbjct: 263 SPRYLLRHNHVEKVYKILSRIHPEAK-PAEIAYKVSLIQEGVKVDFPEGNKFQHFFHSLK 321
Query: 272 I-------RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTN 324
+ R + G LQ FQQF+G N + Y+S I Q GF++ ++ +S+ V TN
Sbjct: 322 VLFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKN---SISVSIVVGATN 378
Query: 325 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI---SGSSASSSGVYGWIAVIG 381
V TIV ID GR+++ L + A +I L L + A+ + ++ +++ + ++ +
Sbjct: 379 FVFTIVAFMFIDRIGRRRILLCTSAVMIAGLALCAIAYHFLPADTTQNTNSGWQYVVLAS 438
Query: 382 LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 441
+ +++A +A G+G +PW +E++P + R + G S +NW+ NLI++ +FLT+ E +
Sbjct: 439 IIIFLASYASGIGNIPWQ-QAELFPMEVRALGAGFSTAINWVGNLIISASFLTMMESITP 497
Query: 442 GATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGN 497
TF + AG + +V PE G++ + ++ ++ W + + + G
Sbjct: 498 TGTFALFAGFCFVGLVTSYFTYPELAGMSIENIHKLLEKGFWQAVKESTKRVRKGR 553
|
Transporter for myo-inositol. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P30606|ITR2_YEAST Myo-inositol transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ITR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 271 bits (694), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 158/471 (33%), Positives = 263/471 (55%), Gaps = 27/471 (5%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+++ LT +A I G +FGYDTG IS AL+ I D + + +E I + +GA++ +
Sbjct: 108 FIITLTFVASISGFMFGYDTGYISSALISINRDLDNKVLTYGEKELITAATSLGALITSV 167
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149
G D +GR+ + ++++F GAI+ A + + GRL++G GVGI S+ +P++I
Sbjct: 168 GAGTAADVFGRRPCLMFSNLMFLIGAILQITAHKFWQMAAGRLIMGFGVGIGSLISPLFI 227
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209
+E +P +RG L N L +T GQ ++Y V WR ++G+S +P ++QF
Sbjct: 228 SEIAPKMIRGRLTVINSLWLTGGQLIAYGCGAGLNHVKNGWRILVGLSLIPTVLQFSFFC 287
Query: 210 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI-----DHLSAAAEEELRKKKTVRYL 264
F+P++PR+ MK D ++A +VL + Y EDEI + LS+ + K ++
Sbjct: 288 FLPDTPRYYVMKGDLKRAKMVLKRSY--VNTEDEIIDQKVEELSSLNQSIPGKNPITKFW 345
Query: 265 DVFKS-----KEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLA 319
++ K R A + G GLQA QQFTG N++MY+S TI + GF+++ +S+
Sbjct: 346 NMVKELHTVPSNFR-ALIIGCGLQAIQQFTGWNSLMYFSGTIFETVGFKNSS---AVSII 401
Query: 320 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF------ISGSSA--SSS 371
V+GTN V T++ + ID GR+ + L L G+ ++LV+ + AF +G+ A +S
Sbjct: 402 VSGTNFVFTLIAFFCIDKIGRRYILLIGLPGMTVALVICAIAFHFLGIKFNGADAVVASD 461
Query: 372 GVYGW--IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVA 429
G W + ++ + +Y AF+A G+G VPW SE++P+ RG+ + NW +L++A
Sbjct: 462 GFSSWGIVIIVFIIVYAAFYALGIGTVPWQ-QSELFPQNVRGVGTSYATATNWAGSLVIA 520
Query: 430 QTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKE 480
TFLT+ + + TF AG+A L+ +F PE GL EV+ + K+
Sbjct: 521 STFLTMLQNITPTGTFSFFAGVACLSTIFCYFCYPELSGLELEEVQTILKD 571
|
Minor transporter for myo-inositol. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q96QE2|MYCT_HUMAN Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 227/355 (63%), Gaps = 6/355 (1%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+V + V + +GG LFGYDTGV+SGA+L +K ++ + QE +VS + A V A
Sbjct: 80 FVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLSLDALWQELLVSSTVGAAAVSAL 136
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149
+GG +N +GR+ A LLA +FTAG+ ++AAA + L+ GRL+VGLG+GIAS+T PVYI
Sbjct: 137 AGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYI 196
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAVPAIIQFVLM 208
AE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++AVPA+IQF
Sbjct: 197 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGF 256
Query: 209 LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR--YLDV 266
LF+PESPRWL K +KA +LS++ +++E D + EEE ++ + +
Sbjct: 257 LFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRM 316
Query: 267 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAV 326
R A + G GLQ FQQ +GINT+MYYS TI+QM+G + ++LA+ L+ A TN +
Sbjct: 317 LSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFI 376
Query: 327 GTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 381
T+VG++L++ GR+KL SLAG ++L++L+ F+ + S + IA G
Sbjct: 377 FTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFVLSAQVSPRITFKPIAPSG 431
|
H(+)-myo-inositol cotransporter. Can also transport related stereoisomers. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| 224133102 | 489 | predicted protein [Populus trichocarpa] | 0.979 | 1.0 | 0.834 | 0.0 | |
| 30689342 | 509 | putative inositol transporter 1 [Arabido | 1.0 | 0.980 | 0.813 | 0.0 | |
| 297824309 | 521 | hypothetical protein ARALYDRAFT_322009 [ | 1.0 | 0.957 | 0.798 | 0.0 | |
| 2289003 | 521 | putative membrane transporter [Arabidops | 1.0 | 0.957 | 0.794 | 0.0 | |
| 449468830 | 495 | PREDICTED: inositol transporter 1-like [ | 0.987 | 0.995 | 0.805 | 0.0 | |
| 225433847 | 499 | PREDICTED: probable inositol transporter | 0.993 | 0.993 | 0.792 | 0.0 | |
| 356527449 | 501 | PREDICTED: probable inositol transporter | 0.993 | 0.990 | 0.760 | 0.0 | |
| 357501429 | 500 | hypothetical protein MTR_7g005910 [Medic | 0.993 | 0.992 | 0.742 | 0.0 | |
| 356576905 | 499 | PREDICTED: probable inositol transporter | 0.983 | 0.983 | 0.742 | 0.0 | |
| 357445131 | 508 | hypothetical protein MTR_1g116660 [Medic | 0.975 | 0.958 | 0.75 | 0.0 |
| >gi|224133102|ref|XP_002327961.1| predicted protein [Populus trichocarpa] gi|222837370|gb|EEE75749.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/489 (83%), Positives = 448/489 (91%)
Query: 9 PGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQ 68
PGSSGYLD+FP+RRMSYFSN YV+GLTV AGIGGLLFGYDTGVISGALLYIKD+FE VNQ
Sbjct: 1 PGSSGYLDMFPERRMSYFSNSYVIGLTVAAGIGGLLFGYDTGVISGALLYIKDEFEVVNQ 60
Query: 69 SSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLI 128
SSFLQETIVSMALVGAI+GAA GGWINDAYGRKKATLLADVVF AG+I+MAAAP+PYVLI
Sbjct: 61 SSFLQETIVSMALVGAIIGAAGGGWINDAYGRKKATLLADVVFAAGSIVMAAAPNPYVLI 120
Query: 129 LGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG 188
LGRL VGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVNLAFTEVPG
Sbjct: 121 LGRLFVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNLAFTEVPG 180
Query: 189 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLS 248
TWRWM+GV+AVPA+IQF +ML +PESPRWLFMK +K KAI +LSKIYD+ARL+DEIDHLS
Sbjct: 181 TWRWMVGVAAVPAVIQFCIMLCLPESPRWLFMKDNKAKAIAILSKIYDVARLQDEIDHLS 240
Query: 249 AAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQ 308
EEE +K+ V+ DVFKSKEIRLAFL GAGLQAFQQFTGINTVMYYSPTIVQMAGF
Sbjct: 241 ITEEEECQKRNDVKISDVFKSKEIRLAFLVGAGLQAFQQFTGINTVMYYSPTIVQMAGFS 300
Query: 309 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA 368
SNQLALLLSL +A NA GT++GIYLIDHFGRKKLA+SSLAGVI SL +L+ AF SS
Sbjct: 301 SNQLALLLSLVIAAMNAAGTVLGIYLIDHFGRKKLAISSLAGVIASLFILAGAFFGKSSG 360
Query: 369 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 428
SS+ +YGWIAV+GLAL IA F+PGMGPVPWT+NSE+YPEQYRGICGGMSATVNWISNLIV
Sbjct: 361 SSNELYGWIAVLGLALCIACFSPGMGPVPWTVNSEIYPEQYRGICGGMSATVNWISNLIV 420
Query: 429 AQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLN 488
AQTFL++AE VGTG+TFL+LAGIAVLAVVFVI++VPET GL F+EVEQ+WKERAWGSS N
Sbjct: 421 AQTFLSIAEAVGTGSTFLMLAGIAVLAVVFVIMYVPETMGLAFVEVEQIWKERAWGSSYN 480
Query: 489 TESLLEHGN 497
TESLLE GN
Sbjct: 481 TESLLEQGN 489
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30689342|ref|NP_850393.1| putative inositol transporter 1 [Arabidopsis thaliana] gi|75331205|sp|Q8VZR6.1|INT1_ARATH RecName: Full=Inositol transporter 1 gi|17380890|gb|AAL36257.1| putative membrane transporter protein [Arabidopsis thaliana] gi|20465939|gb|AAM20155.1| putative membrane transporter protein [Arabidopsis thaliana] gi|84617967|emb|CAJ00303.1| inositol transporter 1 [Arabidopsis thaliana] gi|330255158|gb|AEC10252.1| putative inositol transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/509 (81%), Positives = 452/509 (88%), Gaps = 10/509 (1%)
Query: 1 MTLTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIK 60
MTLT+ + PGSSGYLD+FP+RRMSYF N Y+LGLTV AGIGGLLFGYDTGVISGALLYIK
Sbjct: 1 MTLTIPNAPGSSGYLDMFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIK 60
Query: 61 DDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA 120
DDFE V QSSFLQETIVSMALVGA++GAA+GGWIND YGRKKATL ADVVF AGAI+MAA
Sbjct: 61 DDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAA 120
Query: 121 APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN 180
APDPYVLI GRLLVGLGVG+ASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVN
Sbjct: 121 APDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVN 180
Query: 181 LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 240
AFT+VPGTWRWMLGVS VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RL
Sbjct: 181 SAFTQVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRL 240
Query: 241 EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT 300
EDEIDHLSAA EEE ++K+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPT
Sbjct: 241 EDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPT 300
Query: 301 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW 360
IVQMAGF SNQLAL LSL VA NA GT+VGIY IDH GRKKLALSSL GVIISL++LS
Sbjct: 301 IVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSV 360
Query: 361 AFISGSSASSS-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419
+F S SS G+YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSAT
Sbjct: 361 SFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSAT 420
Query: 420 VNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWK 479
VNWISNLIVAQTFLT+AE GTG TFLILAGIAVLAV+FVI+FVPETQGLTF EVEQ+WK
Sbjct: 421 VNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWK 480
Query: 480 ERA------WGSSL---NTESLLEHGNSS 499
ERA WGSS N E LLE G+ S
Sbjct: 481 ERAYGNISGWGSSSDSNNMEGLLEQGSQS 509
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824309|ref|XP_002880037.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata] gi|297325876|gb|EFH56296.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/521 (79%), Positives = 453/521 (86%), Gaps = 22/521 (4%)
Query: 1 MTLTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIK 60
MTLT+ + PGSSGYLD+FP+RRMSYF N Y+LGLTV AGIGGLLFGYDTGVISGALLYIK
Sbjct: 1 MTLTIPNAPGSSGYLDMFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIK 60
Query: 61 DDFEAVNQSSFLQ------------ETIVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108
DDFE V QSSFLQ ETIVSMALVGA++GAA+GGWIND YGRKKATL AD
Sbjct: 61 DDFEVVKQSSFLQVNYVSCFTSCKLETIVSMALVGAMIGAAAGGWINDYYGRKKATLFAD 120
Query: 109 VVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLM 168
VVF AGAI+MAAAPDPYVLI GRLLVGLGVG+ASVTAPVYIAEASPSEVRGGLVSTNVLM
Sbjct: 121 VVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLM 180
Query: 169 ITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAI 228
IT GQFLSYLVN AFT+VPGTWRWMLGVS VPA+IQFVLMLFMPESPRWLFMK+ K +AI
Sbjct: 181 ITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFVLMLFMPESPRWLFMKNRKAEAI 240
Query: 229 LVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQF 288
VL++ YDI+RLEDEIDHLSAA EEE ++K+TV YLDVF+SKE+RLAFLAGAGLQAFQQF
Sbjct: 241 QVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQF 300
Query: 289 TGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 348
TGINTVMYYSPTIVQMAGF SNQLAL LSL VA NA GT+VGIY IDH GRKKLALSSL
Sbjct: 301 TGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSL 360
Query: 349 AGVIISLVLLSWAFISGSSASSS-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE 407
GVIISL++LS +F S ASS G+YGW+AV+GLALYIAFFAPGMGPVPWT+NSE+YP+
Sbjct: 361 FGVIISLLILSVSFFKQSDASSDGGLYGWLAVLGLALYIAFFAPGMGPVPWTVNSEIYPQ 420
Query: 408 QYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 467
QYRGICGGMSATVNWISNLIVAQTFLT+AE GTG TFLILAGIA LAV+FVI+FVPETQ
Sbjct: 421 QYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAFLAVIFVIVFVPETQ 480
Query: 468 GLTFLEVEQMWKERA------WGSSL---NTESLLEHGNSS 499
GLTF EVEQ+WKERA WGSS N E LLE G+ S
Sbjct: 481 GLTFSEVEQIWKERAYGDISGWGSSSDSNNMEGLLEQGSQS 521
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2289003|gb|AAB64332.1| putative membrane transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/521 (79%), Positives = 452/521 (86%), Gaps = 22/521 (4%)
Query: 1 MTLTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIK 60
MTLT+ + PGSSGYLD+FP+RRMSYF N Y+LGLTV AGIGGLLFGYDTGVISGALLYIK
Sbjct: 1 MTLTIPNAPGSSGYLDMFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIK 60
Query: 61 DDFEAVNQSSFLQ------------ETIVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108
DDFE V QSSFLQ ETIVSMALVGA++GAA+GGWIND YGRKKATL AD
Sbjct: 61 DDFEVVKQSSFLQVYNVSSFTSSKLETIVSMALVGAMIGAAAGGWINDYYGRKKATLFAD 120
Query: 109 VVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLM 168
VVF AGAI+MAAAPDPYVLI GRLLVGLGVG+ASVTAPVYIAEASPSEVRGGLVSTNVLM
Sbjct: 121 VVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLM 180
Query: 169 ITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAI 228
IT GQFLSYLVN AFT+VPGTWRWMLGVS VPA+IQF+LMLFMPESPRWLFMK+ K +AI
Sbjct: 181 ITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAI 240
Query: 229 LVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQF 288
VL++ YDI+RLEDEIDHLSAA EEE ++K+TV YLDVF+SKE+RLAFLAGAGLQAFQQF
Sbjct: 241 QVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQF 300
Query: 289 TGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 348
TGINTVMYYSPTIVQMAGF SNQLAL LSL VA NA GT+VGIY IDH GRKKLALSSL
Sbjct: 301 TGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSL 360
Query: 349 AGVIISLVLLSWAFISGSSASSS-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE 407
GVIISL++LS +F S SS G+YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+
Sbjct: 361 FGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQ 420
Query: 408 QYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 467
QYRGICGGMSATVNWISNLIVAQTFLT+AE GTG TFLILAGIAVLAV+FVI+FVPETQ
Sbjct: 421 QYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQ 480
Query: 468 GLTFLEVEQMWKERA------WGSSL---NTESLLEHGNSS 499
GLTF EVEQ+WKERA WGSS N E LLE G+ S
Sbjct: 481 GLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGSQS 521
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468830|ref|XP_004152124.1| PREDICTED: inositol transporter 1-like [Cucumis sativus] gi|449484700|ref|XP_004156956.1| PREDICTED: inositol transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/493 (80%), Positives = 444/493 (90%)
Query: 1 MTLTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIK 60
MTLTLES+PGSSGYLD++P+R+M YF N YVLGLTV+AGIGGLLFGYDTGVISGALLYIK
Sbjct: 1 MTLTLESLPGSSGYLDIYPERKMYYFKNPYVLGLTVVAGIGGLLFGYDTGVISGALLYIK 60
Query: 61 DDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA 120
DDFEAV SSFLQETIVSMA++GAIVGAA+GGWINDAYGRKKATLLADVVF GA +MAA
Sbjct: 61 DDFEAVRNSSFLQETIVSMAVLGAIVGAAAGGWINDAYGRKKATLLADVVFAIGAAVMAA 120
Query: 121 APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN 180
APDPY+LI GR LVG+GVG+ASVTAPVYIAEASPSE+RGGLVSTNVLMIT GQFLSYL+N
Sbjct: 121 APDPYILIAGRFLVGMGVGVASVTAPVYIAEASPSEIRGGLVSTNVLMITVGQFLSYLIN 180
Query: 181 LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 240
LAFT+VPGTWRWMLGVS VPA+IQFV MLF+PESPRWLFMK +K KA VLSKIYD RL
Sbjct: 181 LAFTQVPGTWRWMLGVSGVPAVIQFVFMLFLPESPRWLFMKDEKSKATAVLSKIYDFPRL 240
Query: 241 EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT 300
EDEID+LS+ EEE KK V Y+DVFKSKEIR+AFLAGAGLQAFQQFTGINTVMYYSPT
Sbjct: 241 EDEIDYLSSQLEEEKHKKINVSYMDVFKSKEIRIAFLAGAGLQAFQQFTGINTVMYYSPT 300
Query: 301 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW 360
IVQMAGF+SNQLALLLSL VA NA GT++GIYLIDH GRKKLA+SSL+GVI+SL +LS
Sbjct: 301 IVQMAGFRSNQLALLLSLIVAAMNAAGTVLGIYLIDHVGRKKLAISSLSGVIVSLAILSG 360
Query: 361 AFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV 420
A +G S++G+ G IAVIGLALYIAFF+PGMGPVPWT+NSE+YPE YRG+CGGMSATV
Sbjct: 361 ALFAGQYGSTNGLNGCIAVIGLALYIAFFSPGMGPVPWTVNSEIYPEAYRGLCGGMSATV 420
Query: 421 NWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKE 480
NWISNLIVAQTFL++AE+ GTG TFLI A IAVLA+VFV+++VPETQGLTF EVE++WKE
Sbjct: 421 NWISNLIVAQTFLSLAEVAGTGLTFLIFAAIAVLAIVFVVVYVPETQGLTFEEVERIWKE 480
Query: 481 RAWGSSLNTESLL 493
RAWG NTESLL
Sbjct: 481 RAWGRDSNTESLL 493
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433847|ref|XP_002263742.1| PREDICTED: probable inositol transporter 1 [Vitis vinifera] gi|297743762|emb|CBI36645.3| unnamed protein product [Vitis vinifera] gi|310877896|gb|ADP37179.1| putative inositol transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/497 (79%), Positives = 448/497 (90%), Gaps = 1/497 (0%)
Query: 3 LTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDD 62
+T++S+PGSSGYLD +P RR++YFSN Y+LGLT +AGIGGLLFGYDTGVISGALLYIKDD
Sbjct: 1 MTIDSLPGSSGYLDSYPGRRITYFSNGYILGLTAVAGIGGLLFGYDTGVISGALLYIKDD 60
Query: 63 FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP 122
FE V QSSFLQETIVSMALVGA++GAA+GGWINDAYGRKKATLLAD+VFT GAI+MAAAP
Sbjct: 61 FEVVGQSSFLQETIVSMALVGAMIGAAAGGWINDAYGRKKATLLADIVFTIGAIVMAAAP 120
Query: 123 DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA 182
+PYVLI GRLLVGLGVG+ASVTAPVYIAEASPSE+RGGLVSTNVLMIT GQFLSYLVNLA
Sbjct: 121 NPYVLIAGRLLVGLGVGVASVTAPVYIAEASPSEIRGGLVSTNVLMITGGQFLSYLVNLA 180
Query: 183 FTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLED 242
FTEVPGTWRWMLGVS VP++IQF LMLF+PESPRWL++K +K +AI VLSKIYD RLED
Sbjct: 181 FTEVPGTWRWMLGVSGVPSVIQFSLMLFLPESPRWLYLKGNKSQAISVLSKIYDPERLED 240
Query: 243 EIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV 302
EID L+AAAEEE ++K VRY DVFKSKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIV
Sbjct: 241 EIDQLAAAAEEERQRKNAVRYRDVFKSKEMRLAFLAGAGLQAFQQFTGINTVMYYSPTIV 300
Query: 303 QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 362
QMAGF+SNQLALLLSL VA NA GTIVGIYLIDH GR++LALSSL+GV +SLV+LS +F
Sbjct: 301 QMAGFRSNQLALLLSLIVAAMNAAGTIVGIYLIDHVGRRRLALSSLSGVFVSLVILSGSF 360
Query: 363 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 422
SS S SG+YGW+AV+GLALYIA F+PGMGPVPW +NSE+YPE YRGICGGMSAT+NW
Sbjct: 361 YMHSSGSGSGLYGWLAVLGLALYIACFSPGMGPVPWAVNSEIYPEAYRGICGGMSATINW 420
Query: 423 ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA 482
ISNLIVAQ+FL+VA VGTGATFLILAG+AV+A VFVI+F+PET+GLTF E++Q+WKERA
Sbjct: 421 ISNLIVAQSFLSVATAVGTGATFLILAGVAVVAFVFVIVFLPETKGLTFEEMDQLWKERA 480
Query: 483 WGSSLNTESLLEHGNSS 499
G S E LLE + +
Sbjct: 481 RGHS-RGEGLLEDQDDN 496
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527449|ref|XP_003532323.1| PREDICTED: probable inositol transporter 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/497 (76%), Positives = 446/497 (89%), Gaps = 1/497 (0%)
Query: 3 LTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDD 62
+T++S PGSSGYLDL+P+R+MS+F N Y+LGL +AGIGGLLFGYDTGVISGALLYIKDD
Sbjct: 6 ITMQSTPGSSGYLDLYPERKMSFFKNPYILGLAAVAGIGGLLFGYDTGVISGALLYIKDD 65
Query: 63 FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP 122
FE V S+ LQETIVSMA+ GAIVGAA GGWINDAYGRKKATL ADV+FTAGAIIMA+AP
Sbjct: 66 FEEVRNSNLLQETIVSMAIAGAIVGAALGGWINDAYGRKKATLFADVIFTAGAIIMASAP 125
Query: 123 DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA 182
DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE+RG LVSTNVLMIT GQFLSYLVNLA
Sbjct: 126 DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEIRGSLVSTNVLMITGGQFLSYLVNLA 185
Query: 183 FTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLED 242
FT VPGTWRWMLGVS VPA++QFVLMLF+PESPRWLF+K+ K +A+ VLSKI+D+ARLED
Sbjct: 186 FTGVPGTWRWMLGVSGVPAVVQFVLMLFLPESPRWLFVKNRKNEAVDVLSKIFDVARLED 245
Query: 243 EIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV 302
E+D L+A +E+E +++ +++ DVF+SKEIRLAFL GAGL AFQQFTGINTVMYYSPTIV
Sbjct: 246 EVDFLTAQSEQERQRRSNIKFWDVFRSKEIRLAFLVGAGLLAFQQFTGINTVMYYSPTIV 305
Query: 303 QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 362
QMAGF +N+LALLLSL VAG NA GTI+GIYLIDH GRKKLALSSL GVI+SLV+L++AF
Sbjct: 306 QMAGFHANELALLLSLIVAGMNAAGTILGIYLIDHAGRKKLALSSLGGVIVSLVILAFAF 365
Query: 363 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 422
SS S+ +YGW+AV+GLALYI FF+PGMGPVPWTL+SE+YPE+YRGICGGMSATV W
Sbjct: 366 YKQSSTSNE-LYGWLAVVGLALYIGFFSPGMGPVPWTLSSEIYPEEYRGICGGMSATVCW 424
Query: 423 ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA 482
+SNLIV++TFL++AE +G G+TFLI+ IAV+A VFV+++VPET+GLTF EVE +W+ERA
Sbjct: 425 VSNLIVSETFLSIAEGIGIGSTFLIIGVIAVVAFVFVLVYVPETKGLTFDEVEVIWRERA 484
Query: 483 WGSSLNTESLLEHGNSS 499
WG + NT++LLE G+SS
Sbjct: 485 WGKNPNTQNLLEQGSSS 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501429|ref|XP_003621003.1| hypothetical protein MTR_7g005910 [Medicago truncatula] gi|124365541|gb|ABN09775.1| General substrate transporter [Medicago truncatula] gi|355496018|gb|AES77221.1| hypothetical protein MTR_7g005910 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/497 (74%), Positives = 437/497 (87%), Gaps = 1/497 (0%)
Query: 3 LTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDD 62
+ ++S PGSSGYLD+ PDR+MS+F N Y+LGL +AGIGGLLFGYDTGVISGALLYIKDD
Sbjct: 5 IAMQSTPGSSGYLDMHPDRKMSFFKNPYILGLAAVAGIGGLLFGYDTGVISGALLYIKDD 64
Query: 63 FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP 122
F V S+FLQETIVSMA+ GAIVGAA GGW+NDAYGRKKATLLADV+F GAI+MAAAP
Sbjct: 65 FPQVRNSNFLQETIVSMAIAGAIVGAAFGGWLNDAYGRKKATLLADVIFILGAILMAAAP 124
Query: 123 DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA 182
DPYVLI GRLLVGLGVGIASVTAPVYIAE +PSE+RG LVSTNVLMIT GQF+SYLVNL
Sbjct: 125 DPYVLIAGRLLVGLGVGIASVTAPVYIAEVAPSEIRGSLVSTNVLMITGGQFVSYLVNLV 184
Query: 183 FTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLED 242
FT+VPGTWRWMLGVS VPA+IQF+ MLF+PESPRWLF+K+ K +A+ V+SKIYD++RLED
Sbjct: 185 FTQVPGTWRWMLGVSGVPALIQFICMLFLPESPRWLFIKNRKNEAVDVISKIYDLSRLED 244
Query: 243 EIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV 302
EID L+A +E+E +++ T+++ VF+SKE RLAFL G GL AFQQFTGINTVMYYSPTIV
Sbjct: 245 EIDFLTAQSEQERQRRSTIKFWHVFRSKETRLAFLVGGGLLAFQQFTGINTVMYYSPTIV 304
Query: 303 QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 362
QMAGF +NQLALLLSL VAG NAVGTI+GIYLID+ GRKKLALSSLAGVI SL++LS AF
Sbjct: 305 QMAGFHANQLALLLSLIVAGMNAVGTILGIYLIDNTGRKKLALSSLAGVIASLIMLSVAF 364
Query: 363 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 422
SS S++ VYGW+AVIGL LYI FF+PGMGPVPWT+NSE+YPE+YRGICGGM+ATV W
Sbjct: 365 YKQSS-STNEVYGWLAVIGLGLYIGFFSPGMGPVPWTINSEIYPEEYRGICGGMAATVCW 423
Query: 423 ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA 482
ISNLIV+++FL++A+ +G +TFLI+A IAV+A +FV+L+VPETQGLTF EVE +WKERA
Sbjct: 424 ISNLIVSESFLSIADAIGIASTFLIIAVIAVVAFLFVLLYVPETQGLTFDEVELIWKERA 483
Query: 483 WGSSLNTESLLEHGNSS 499
WG + NT++LLE G+ S
Sbjct: 484 WGKNPNTQNLLEQGSQS 500
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576905|ref|XP_003556570.1| PREDICTED: probable inositol transporter 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/494 (74%), Positives = 436/494 (88%), Gaps = 3/494 (0%)
Query: 1 MTLTLE-SIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYI 59
MT+T SIPGSSGYLD++P+R++S F N Y++G T +A IGGLLFGYDTGVISGALLYI
Sbjct: 1 MTITTHYSIPGSSGYLDIYPERKVSAFQNPYIMGFTAVASIGGLLFGYDTGVISGALLYI 60
Query: 60 KDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA 119
KDDF V S+FLQETIVSMA+ GAIVGAA+GGWIND YGRKKATL+ADV+FT GAI+MA
Sbjct: 61 KDDFPEVRHSNFLQETIVSMAVTGAIVGAAAGGWINDVYGRKKATLIADVIFTLGAIVMA 120
Query: 120 AAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLV 179
AAPDPY+LI+GR+LVGLGVGIASVTAPVYIAE+SPSE+RG LV NVLMIT GQFLSYL+
Sbjct: 121 AAPDPYILIIGRVLVGLGVGIASVTAPVYIAESSPSEIRGALVGINVLMITGGQFLSYLI 180
Query: 180 NLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 239
NLAFT+VPGTWRWMLGVS VPA++QF LML +PESPRWLF+K+ KE+AI VL+KIYD AR
Sbjct: 181 NLAFTQVPGTWRWMLGVSGVPAVVQFFLMLLLPESPRWLFIKNRKEEAITVLAKIYDFAR 240
Query: 240 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSP 299
LEDE++ L+ +E++ +++ +RY DVFKSKEIRLAFLAGAGLQAFQQF GINTVMYYSP
Sbjct: 241 LEDEVNLLTTQSEKDCQRRDGIRYWDVFKSKEIRLAFLAGAGLQAFQQFIGINTVMYYSP 300
Query: 300 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS 359
TIVQMAGFQSN+LALLLSL VAG NA G+++GIYLIDH GR+KLAL SL GVI SL++L+
Sbjct: 301 TIVQMAGFQSNELALLLSLIVAGMNAAGSVLGIYLIDHAGRRKLALYSLGGVIASLIILA 360
Query: 360 WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419
+F + S S SG+YGW+A++GLALYIAFF+PGMGPVPWT+NSEVYPE+YRGICGGMSAT
Sbjct: 361 LSFFNQS--SESGLYGWLAILGLALYIAFFSPGMGPVPWTVNSEVYPEEYRGICGGMSAT 418
Query: 420 VNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWK 479
VNW+SNLIV Q+FL+VA VGTG TFLI+A IAVLA +FV+++VPET+GLTF EVE +WK
Sbjct: 419 VNWVSNLIVVQSFLSVAAAVGTGPTFLIIAIIAVLAFMFVVVYVPETKGLTFDEVELLWK 478
Query: 480 ERAWGSSLNTESLL 493
ERAWG + + +SLL
Sbjct: 479 ERAWGKNPDAQSLL 492
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357445131|ref|XP_003592843.1| hypothetical protein MTR_1g116660 [Medicago truncatula] gi|355481891|gb|AES63094.1| hypothetical protein MTR_1g116660 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/488 (75%), Positives = 428/488 (87%), Gaps = 1/488 (0%)
Query: 5 LESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFE 64
++S PGSSGYLDL+P+R+MS+F N Y+LGL +AGIGGLLFGYDTGVISGALLYIKDDFE
Sbjct: 9 VQSTPGSSGYLDLYPERKMSFFKNPYILGLAAVAGIGGLLFGYDTGVISGALLYIKDDFE 68
Query: 65 AVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP 124
+V +S+ LQETIVSMA+ GAIVGAA GGWINDAYGRKKATL+ADV+F GAI MAAAPDP
Sbjct: 69 SVRESNILQETIVSMAIAGAIVGAAIGGWINDAYGRKKATLIADVIFIIGAIGMAAAPDP 128
Query: 125 YVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 184
Y+LI+GRLLVGLGVGIASVTAPVYIAEASPSE+RG LVSTN LMITSGQ LSY+VNLAFT
Sbjct: 129 YILIIGRLLVGLGVGIASVTAPVYIAEASPSEIRGSLVSTNSLMITSGQLLSYIVNLAFT 188
Query: 185 EVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 244
VPGTWRWMLGVSAVPA++QF+LMLF+PESPRWLFMK+ K +A+ V+S IYD+ARLEDE+
Sbjct: 189 RVPGTWRWMLGVSAVPALVQFILMLFLPESPRWLFMKNRKNEAVDVISNIYDLARLEDEV 248
Query: 245 DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 304
D L+A AE++ +K V++ DVFKSKEIRLAF+ GAGL FQQFTGINTVMYYSPTIVQM
Sbjct: 249 DFLTAEAEQDRQKNMNVKFKDVFKSKEIRLAFMVGAGLMVFQQFTGINTVMYYSPTIVQM 308
Query: 305 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 364
AGFQS +LAL +SL VA NAVGT++GIYLIDH GRK LAL SL GV SLVLLS AF +
Sbjct: 309 AGFQSKELALQISLFVAAMNAVGTVLGIYLIDHAGRKILALCSLGGVFTSLVLLSVAFSN 368
Query: 365 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 424
+SA++S GW+AV+GL LYIAFF+PGMGPVPW +NSE+YP++YRGICGGMSATV W+S
Sbjct: 369 QTSAAASNATGWLAVLGLILYIAFFSPGMGPVPWAMNSEIYPKEYRGICGGMSATVCWVS 428
Query: 425 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAW- 483
NLIV+QTFL+VAE +GTG TFLILA I VLA +FV+L+VPET+GLTF EVE +WKERAW
Sbjct: 429 NLIVSQTFLSVAEALGTGPTFLILAVITVLAFLFVLLYVPETKGLTFDEVELIWKERAWG 488
Query: 484 GSSLNTES 491
G+++N S
Sbjct: 489 GTNINNNS 496
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| TAIR|locus:2058193 | 509 | INT1 "inositol transporter 1" | 1.0 | 0.980 | 0.697 | 6e-183 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.675 | 0.581 | 0.529 | 6.7e-119 | |
| TAIR|locus:2130689 | 582 | INT4 "inositol transporter 4" | 0.667 | 0.572 | 0.483 | 3.5e-107 | |
| TAIR|locus:2058774 | 580 | INT3 "nositol transporter 3" [ | 0.667 | 0.574 | 0.469 | 3.2e-104 | |
| UNIPROTKB|Q96QE2 | 648 | SLC2A13 "Proton myo-inositol c | 0.663 | 0.510 | 0.373 | 1.1e-76 | |
| UNIPROTKB|E1BML6 | 648 | SLC2A13 "Uncharacterized prote | 0.663 | 0.510 | 0.370 | 2.2e-76 | |
| MGI|MGI:2146030 | 637 | Slc2a13 "solute carrier family | 0.661 | 0.518 | 0.369 | 3.6e-76 | |
| RGD|621814 | 637 | Slc2a13 "solute carrier family | 0.663 | 0.519 | 0.364 | 5.9e-76 | |
| UNIPROTKB|F1PGX9 | 652 | SLC2A13 "Uncharacterized prote | 0.661 | 0.506 | 0.372 | 2.5e-75 | |
| ZFIN|ZDB-GENE-090812-1 | 546 | slc2a13b "solute carrier famil | 0.533 | 0.487 | 0.394 | 1.6e-67 |
| TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1775 (629.9 bits), Expect = 6.0e-183, P = 6.0e-183
Identities = 355/509 (69%), Positives = 390/509 (76%)
Query: 1 MTLTLESIPGSSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIK 60
MTLT+ + PGSSGYLD+FP+RRMSYF N Y+LGLTV AGIGGLLFGYDTGVISGALLYIK
Sbjct: 1 MTLTIPNAPGSSGYLDMFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIK 60
Query: 61 DDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA 120
DDFE V QSSFLQETIVSMALVGA++GAA+GGWIND YGRKKATL ADVVF AGAI+MAA
Sbjct: 61 DDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAA 120
Query: 121 APDPYXXXXXXXXXXXXXXXASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN 180
APDPY ASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVN
Sbjct: 121 APDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVN 180
Query: 181 LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 240
AFT+VPGTWRWMLGVS VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RL
Sbjct: 181 SAFTQVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRL 240
Query: 241 EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPT 300
EDEIDHLSAA EEE ++K+TV YLDVF+SKE+R INTVMYYSPT
Sbjct: 241 EDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPT 300
Query: 301 IVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW 360
IVQMAGF SNQ NA GT+VGIY IDH GRKKLALSSL GVIISL++LS
Sbjct: 301 IVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSV 360
Query: 361 AFIXXXXXXXXX-VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419
+F +YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSAT
Sbjct: 361 SFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSAT 420
Query: 420 VNWISNLIVAQTFLTVAELVGTGATXXXXXXXXXXXXXXXXXXXPETQGLTFLEVEQMWK 479
VNWISNLIVAQTFLT+AE GTG T PETQGLTF EVEQ+WK
Sbjct: 421 VNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWK 480
Query: 480 ERA------WGSSL---NTESLLEHGNSS 499
ERA WGSS N E LLE G+ S
Sbjct: 481 ERAYGNISGWGSSSDSNNMEGLLEQGSQS 509
|
|
| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 180/340 (52%), Positives = 232/340 (68%)
Query: 26 FSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAI 85
+ N YVL L AGIGGLLFGYDTGVISGALLYI+DDF++V+++++LQE IVSMA+ GAI
Sbjct: 23 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAI 82
Query: 86 VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTA 145
VGAA GGW ND GR+ A L+AD +F GAIIMAAAP+P AS+TA
Sbjct: 83 VGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTA 142
Query: 146 PVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF 205
P+YI+EASP+++RG LVSTN +IT GQFLSYL+NLAFT+V GTWRWMLG++ +PA++QF
Sbjct: 143 PLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPALLQF 202
Query: 206 VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK---KTVR 262
VLM +PESPRWL+ K +E+A +L +IY +E EI L + E E+ ++ + +
Sbjct: 203 VLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSEKIN 262
Query: 263 YLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXG 322
+ + K+K +R INTVMYYSPTIVQ+AGF SN+ G
Sbjct: 263 MIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAG 322
Query: 323 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 362
NA G+I+ IY ID GRKKL + SL GVIISL +L+ F
Sbjct: 323 LNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVF 362
|
|
| TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 3.5e-107, Sum P(2) = 3.5e-107
Identities = 164/339 (48%), Positives = 222/339 (65%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
Y++ L + AGIGGLLFGYDTGVISGALL+IK+DF+ V++ ++LQ TIVSMA+ GAIVGAA
Sbjct: 26 YIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAA 85
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTAPVYI 149
GGWIND +GR+ + L+ADV+F GAI+MA AP P+ AS+T+P+YI
Sbjct: 86 VGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYI 145
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209
+EASP+ +RG LVSTN L+IT GQF SYL+NLAF PGTWRWMLGV+ VPAI+QFVLML
Sbjct: 146 SEASPARIRGALVSTNGLLITGGQFFSYLINLAFVHTPGTWRWMLGVAGVPAIVQFVLML 205
Query: 210 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV------RY 263
+PESPRWL+ K ++ +L +IY +E E++ L + E E + + +
Sbjct: 206 SLPESPRWLYRKDRIAESRAILERIYPADEVEAEMEALKLSVEAEKADEAIIGDSFSAKL 265
Query: 264 LDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGT 323
F + +R INTVMYYSP+IVQ AG+ SN+ G
Sbjct: 266 KGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGL 325
Query: 324 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 362
NA+G+IV + +D +GR+KL + S+ G+I L++L+ F
Sbjct: 326 NALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILATVF 364
|
|
| TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
Identities = 159/339 (46%), Positives = 215/339 (63%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
Y++ L + AGIGGLLFGY+TGVI+GALLYIK++F V+ ++LQE IVSM + GAIVGAA
Sbjct: 25 YIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAA 84
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTAPVYI 149
GGW ND +GR+ + L+ADV+F GA++M A P+ AS+T+P+YI
Sbjct: 85 IGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYI 144
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209
+E SP+ +RG LVSTN L+IT GQFLSYL+NLAF PGTWRWMLGVSA+PAIIQF LML
Sbjct: 145 SEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLML 204
Query: 210 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV--RYLDVF 267
+PESPRWL+ K ++ +L +IY +E EI L + E + + + D
Sbjct: 205 TLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDKL 264
Query: 268 K----SKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGT 323
+ + +R INTVMYYSPTI+Q AG+ SN+ G
Sbjct: 265 RGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSGL 324
Query: 324 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 362
NAVG++V + +D +GR+KL + S+ G+I LV+L+ F
Sbjct: 325 NAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVF 363
|
|
| UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 126/337 (37%), Positives = 192/337 (56%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+V + V + +GG LFGYDTGV+SGA+L +K ++ + QE +VS + A V A
Sbjct: 80 FVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLSLDALWQELLVSSTVGAAAVSAL 136
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTAPVYI 149
+GG +N +GR+ A LLA +FTAG+ ++AAA + AS+T PVYI
Sbjct: 137 AGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYI 196
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAVPAIIQFVLM 208
AE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++AVPA+IQF
Sbjct: 197 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGF 256
Query: 209 LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYL--DV 266
LF+PESPRWL K +KA +LS++ +++E D + EEE ++ + + +
Sbjct: 257 LFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRM 316
Query: 267 FKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAV 326
R INT+MYYS TI+QM+G + ++ TN +
Sbjct: 317 LSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFI 376
Query: 327 GTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 363
T+VG++L++ GR+KL SLAG ++L++L+ F+
Sbjct: 377 FTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFV 413
|
|
| UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 125/337 (37%), Positives = 192/337 (56%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+V + V + +GG LFGYDTGV+SGA+L +K ++ + QE +VS + A V A
Sbjct: 80 FVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLSLDAMWQELLVSSTVGAAAVSAL 136
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTAPVYI 149
+GG +N +GR+ A LLA +FTAG+ ++AAA + AS+T PVYI
Sbjct: 137 AGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYI 196
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAVPAIIQFVLM 208
AE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++A+PA+IQF
Sbjct: 197 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGF 256
Query: 209 LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYL--DV 266
LF+PESPRWL K +KA +LS++ +++E D + EEE ++ + + +
Sbjct: 257 LFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRM 316
Query: 267 FKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAV 326
R INT+MYYS TI+QM+G + ++ TN +
Sbjct: 317 LSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFI 376
Query: 327 GTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 363
T+VG++L++ GR+KL SLAG ++L++L+ F+
Sbjct: 377 FTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFL 413
|
|
| MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 125/338 (36%), Positives = 189/338 (55%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+V + +GG LFGYDTGV+SGA+L ++ + + QE +VS A+ A V A
Sbjct: 69 FVYAAAAFSALGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAAL 125
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTAPVYI 149
+GG +N A GR+ A LLA + T G+ ++AAA + AS+T PVYI
Sbjct: 126 AGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYI 185
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAVPAIIQFVLM 208
AE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++A+PA+IQF+
Sbjct: 186 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGF 245
Query: 209 LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR---YLD 265
LF+PESPRWL K +KA +LS++ +++E D + + EEE K+ T
Sbjct: 246 LFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEE-EKEATAAGPIICR 304
Query: 266 VFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNA 325
+ R INT+MYYS TI+QM+G + ++ TN
Sbjct: 305 MLSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNF 364
Query: 326 VGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 363
+ T+VG++L++ GR+KL SLAG ++L++L+ F+
Sbjct: 365 IFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFL 402
|
|
| RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 123/337 (36%), Positives = 188/337 (55%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+V + +GG LFGYDTGV+SGA+L ++ + + QE +VS A+ A V A
Sbjct: 69 FVYAAAAFSALGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAAL 125
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTAPVYI 149
+GG +N A GR+ A LLA + T G+ ++AAA + AS+T PVYI
Sbjct: 126 AGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYI 185
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAVPAIIQFVLM 208
AE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++A+PA+IQF+
Sbjct: 186 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGF 245
Query: 209 LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYL--DV 266
LF+PESPRWL K +KA +LS++ +++E D + + EEE ++ + +
Sbjct: 246 LFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGPIICRM 305
Query: 267 FKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAV 326
R INT+MYYS TI+QM+G + ++ TN +
Sbjct: 306 LSYPPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFI 365
Query: 327 GTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 363
T+VG++L++ GR+KL SLAG ++L +L+ F+
Sbjct: 366 FTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALGFL 402
|
|
| UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 126/338 (37%), Positives = 191/338 (56%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+V V + +GG LFGYDTGV+SGA+L +K ++ + QE +VS + A V A
Sbjct: 84 FVYVAAVFSALGGFLFGYDTGVVSGAMLLLK---RQLSLDALWQELLVSSTVGAAAVSAL 140
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTAPVYI 149
+GG +N +GR+ A LLA +F AG+ ++AAA + AS+T PVYI
Sbjct: 141 AGGALNGVFGRRAAILLASALFAAGSAVLAAAGNRETLLAGRLVVGLGIGIASMTVPVYI 200
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAVPAIIQFVLM 208
AE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++A+PA+IQF
Sbjct: 201 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGF 260
Query: 209 LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKT---VRYLD 265
LF+PESPRWL K +KA +LS++ +++E D + EEE ++ + V Y
Sbjct: 261 LFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVIYR- 319
Query: 266 VFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNA 325
+ R INT+MYYS TI+QM+G + ++ TN
Sbjct: 320 MLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNF 379
Query: 326 VGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 363
+ T+VG++L++ GR+KL SLAG ++L++L+ F+
Sbjct: 380 IFTLVGVWLVEKVGRRKLTFGSLAGTTVALLVLALGFL 417
|
|
| ZFIN|ZDB-GENE-090812-1 slc2a13b "solute carrier family 2 (facilitated glucose transporter), member 13b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 107/271 (39%), Positives = 153/271 (56%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+V L + +GG LFGYDTGV+SGA+L +K + + SS QE +VS+ + A V A
Sbjct: 34 FVYTLAFFSALGGFLFGYDTGVVSGAMLLLKREKKL---SSVWQELLVSITVGAAAVSAL 90
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXXASVTAPVYI 149
+GG++N +GR+ LLA +F AG II++ A + AS+T PVYI
Sbjct: 91 AGGFLNGRFGRRVCILLASFIFCAGGIILSVARNKEALLCGRLTVGLGLGIASMTVPVYI 150
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAVPAIIQFVLM 208
AE SP ++RG LV+ N L IT GQF++ +V+ AF+ +P WR+MLG+S VPA +QF+
Sbjct: 151 AEVSPPDLRGQLVTVNTLFITGGQFIASVVDGAFSYLPHDGWRFMLGLSVVPAALQFLGF 210
Query: 209 LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYL-DVF 267
LF+PESPRWL K + A+LVL +I +E+E + + + +EE R L +
Sbjct: 211 LFLPESPRWLLQKGFTQNALLVLRQIRGDVDVEEEFESIRCSIQEEQRDVAGGPVLWRML 270
Query: 268 KSKEIRXXXXXXXXXXXXXXXXXINTVMYYS 298
S R INTV+YYS
Sbjct: 271 ASPPARRALIVGCGLQMFQQLAGINTVIYYS 301
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3796 | 0.8817 | 0.9628 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3640 | 0.8577 | 0.9365 | yes | no |
| Q8VZR6 | INT1_ARATH | No assigned EC number | 0.8133 | 1.0 | 0.9803 | yes | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3683 | 0.8797 | 0.9461 | yes | no |
| P87110 | ITR2_SCHPO | No assigned EC number | 0.3319 | 0.9178 | 0.8222 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 499 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-109 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-107 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-85 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-27 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-19 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-19 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 4e-17 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-15 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 3e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-12 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 3e-11 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 8e-11 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 8e-09 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 1e-08 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 4e-08 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 7e-08 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 8e-08 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 4e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-06 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 3e-05 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 4e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-05 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 6e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.002 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 330 bits (849), Expect = e-109
Identities = 172/457 (37%), Positives = 264/457 (57%), Gaps = 20/457 (4%)
Query: 34 LTVIAGIGGLLFGYDTGVISGALLYIKDDF--------EAVNQSSFLQETIVSMALVGAI 85
L ++A +GG LFGYDTGVI L IK A S+ L IVS+ VG +
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 86 VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD--PYVLILGRLLVGLGVGIASV 143
+G+ G + D +GRKK+ L+ +V+F GA++ A Y+LI+GR++VGLGVG SV
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 144 TAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV--PGTWRWMLGVSAVPA 201
P+YI+E +P ++RG L S L IT G ++ ++ L + WR LG+ VPA
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 202 IIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV 261
I+ + +LF+PESPRWL +K E+A VL+K+ ++ ++ EI + E + +
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERS-VEAEKA 239
Query: 262 RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVA 321
+L++F+ K +R L G LQ FQQ TGIN + YYSPTI + G +LL+++ V
Sbjct: 240 SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSD---SLLVTIIVG 296
Query: 322 GTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 381
N V T + I+L+D FGR+ L L AG+ I ++L A + G + S +A++
Sbjct: 297 VVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALL-GVAKSKGAGI--VAIVF 353
Query: 382 LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 441
+ L+IAFFA G GPVPW + SE++P R ++ NW++N ++ F + +G
Sbjct: 354 ILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG- 412
Query: 442 GATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMW 478
G FL+ AG+ VL ++FV FVPET+G T E+++++
Sbjct: 413 GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = e-107
Identities = 182/464 (39%), Positives = 259/464 (55%), Gaps = 18/464 (3%)
Query: 26 FSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEA-----VNQSSFLQETIVSMA 80
+ V L++IA IGGL+FGYDTGVI GAL +F+ + SS L +VS+
Sbjct: 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIF 80
Query: 81 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPY---VLILGRLLVGLG 137
LVG +GA GW++D +GRKK+ L+ ++F GAI+M A +LI+GR+L+G+G
Sbjct: 81 LVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIG 140
Query: 138 VGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA--FTEVPGTWRWMLG 195
VGIAS P+Y++E +P +RG L S L IT G ++Y WR LG
Sbjct: 141 VGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG 200
Query: 196 VSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD----IARLEDEIDHLSAAA 251
+ +PA + F+ + F+PESPRWL K E+A L+++ L DE++ +
Sbjct: 201 LQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260
Query: 252 EEELRKKKTVRYLDVFKSKE-IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSN 310
E R + + +F S IR G LQ FQQFTGIN +MYYSPTI + AG S
Sbjct: 261 SIEKRSVQP-SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV-ST 318
Query: 311 QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASS 370
A L+S+ V N T V I+L+D FGR+ L L AG+ I L +L S + SS
Sbjct: 319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378
Query: 371 SGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ 430
G +A++ + L+IAFFA G GPVPW + SE++P R ++ NW++N IV
Sbjct: 379 KSS-GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGF 437
Query: 431 TFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEV 474
F T+ E +G G F+ G+ VL ++FV F+PET+G T E+
Sbjct: 438 LFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 3e-85
Identities = 152/487 (31%), Positives = 249/487 (51%), Gaps = 47/487 (9%)
Query: 27 SNMYVLGLTVIAGIGGLLFGYDTGVISGAL-----LYIKDDFEAVNQSSFLQETIVSMAL 81
++ Y+ +T++A +GGLLFGYDT VISG + +++ + + ++ L V+ AL
Sbjct: 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASAL 65
Query: 82 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAI--------IMAAAPDPYVLILG--- 130
+G I+G A GG+ ++ +GR+ + +A V+F A+ + PD +
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 131 -RLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN--------L 181
R++ G+GVG+AS+ +P+YIAE +P+ +RG LVS N I GQ + Y VN
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA 185
Query: 182 AFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLE 241
++ G WR+M A+PA++ +L+ F+PE+PR+L + +E+A +L KI
Sbjct: 186 SWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT 244
Query: 242 DEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI 301
+ + + + +K + L + G L FQQF GIN V+YY+P I
Sbjct: 245 QALQEIKHSLDH--GRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEI 297
Query: 302 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA 361
+ G S +ALL ++ V N T++ I +D FGRK L + G+ I + L A
Sbjct: 298 FKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 356
Query: 362 FISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN 421
F + + G +A++ + Y+A FA GPV W L SE++P RG ++
Sbjct: 357 FYTQAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQ 409
Query: 422 WISNLIVAQTF------LTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVE 475
WI+N V+ TF + G ++ I + VLA +F+ FVPET+G T E+E
Sbjct: 410 WIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469
Query: 476 QMWKERA 482
+W+
Sbjct: 470 ALWEPET 476
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-27
Identities = 112/419 (26%), Positives = 191/419 (45%), Gaps = 41/419 (9%)
Query: 63 FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP 122
++ V + ++ + S VG ++G+ G+++D +GRKK LL+ +V ++ A +P
Sbjct: 119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP 178
Query: 123 DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG--GLVSTNVLMITSGQFLSYLVN 180
+ V ++ RLLVG+G+G V A V E P + R G + + G L LV
Sbjct: 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSL--GLVLLPLVA 236
Query: 181 LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 240
+P WRW+ ++P + F+L F+PESPRWL + E+A+ +L +I I
Sbjct: 237 YF---IPD-WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGK 292
Query: 241 EDEIDHLSAAAEEELR-KKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSP 299
+ + LS + E++L KK +LD+F++ +R L FT YY
Sbjct: 293 KLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTL----CLMMLWFT--TAFSYYGL 346
Query: 300 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK-LALSSLAGVIISLVLL 358
+ + L L +S V ++ + LID GR+ +A S L + L+LL
Sbjct: 347 VLDLGNLGGNIYLDLFISGLV---ELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL 403
Query: 359 SWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR----GICG 414
F+ ++ LA+ F + + +E+YP R G+C
Sbjct: 404 ---FVPVD-------LYFL-RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCS 452
Query: 415 GMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 473
M+ + IS +V +L L ++ G+A+LA + LF+PET+G+ E
Sbjct: 453 TMARVGSIISPFLV---YLGEKWLF---LPLVLFGGLALLAGILT-LFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 81/391 (20%), Positives = 152/391 (38%), Gaps = 34/391 (8%)
Query: 27 SNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIV 86
+ Y +++ + L+ GYD + A I ++ ++ + S L+G
Sbjct: 11 LSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW-GLDPVQL--GFLFSAGLIGMAF 67
Query: 87 GAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAP 146
GA G + D GR++ L + ++F+ ++ A A + L++ R L GLG+G
Sbjct: 68 GALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLN 127
Query: 147 VYIAEASPSEVRGGLVST-----NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAV-P 200
++E +P RG V + G +L+ + WR + V + P
Sbjct: 128 ALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF------GWRSLFYVGGIAP 181
Query: 201 AIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKT 260
++ +LM F+PES +L K E +++ I + E SA E++ +
Sbjct: 182 LLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAIAPQMQAEA----QSALPEQKATQGTK 236
Query: 261 VRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAV 320
+ + L G+ + + P ++ GF + A +L
Sbjct: 237 RSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGGALFN 295
Query: 321 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 380
G +G+I+ +L D G + AL L G + ++++ S F S + + A+
Sbjct: 296 FG-GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF------SPTLLLLLGAIA 348
Query: 381 GLALYIAFFAPGMGPVPWTLNSEVYPEQYRG 411
G FF G + L + YP R
Sbjct: 349 G------FFVNGGQSGLYALMALFYPTAIRA 373
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-19
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 4/178 (2%)
Query: 35 TVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWI 94
++ +G L G D G++S AL + +D S+ IVS +G +G+ G++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDL---GLSASQAGLIVSAFSLGYALGSLLAGYL 57
Query: 95 NDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASP 154
+D +GR++ LL ++F G++++A A ++L++GR L+GLG G A IAE P
Sbjct: 58 SDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP 117
Query: 155 SEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 212
+ RG + G L L+ E G WRW+ + A+ ++ +L+LF+
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 84/418 (20%), Positives = 155/418 (37%), Gaps = 38/418 (9%)
Query: 52 ISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVF 111
+S A +++D S+ + S G +VG GGW+ D +G +K + V++
Sbjct: 13 LSFAAPMLQEDL---GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIW 69
Query: 112 TAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITS 171
+ A A L + R+L+G + +A P+ R VS
Sbjct: 70 GVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL 129
Query: 172 GQ-FLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM----PESPRWLFMKSDKEK 226
G LV +W+W + V II VL L P+ +WL +++EK
Sbjct: 130 GGIIGGPLVGWILIHF--SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL---TEEEK 184
Query: 227 AILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ 286
I+V L+ + K + ++ K + + L +
Sbjct: 185 YIVVGGL-------------LAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI-- 229
Query: 287 QFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS 346
G+ + + PT + S A ++ +G I+G L D R+ +L
Sbjct: 230 ---GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV 286
Query: 347 -SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY 405
+ II+ ++LS + + + + A+ +AL FF G G + W L S+
Sbjct: 287 FARKTAIIAGLVLSLLMFATNYVNIP----YAALALVAL--GFFGLGAGAIGWALISDNA 340
Query: 406 PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFV 463
P G+ GG+ ++ + ++ +A G+ A L++ L L +
Sbjct: 341 PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 75/389 (19%), Positives = 143/389 (36%), Gaps = 48/389 (12%)
Query: 40 IGGLLFGYDTGVISGAL-LYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY 98
+ L G ++ AL LY+ +D S +++ +G + G ++D +
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAEDL---GISPTEIGLLLTAFSLGYALAQPLAGRLSDRF 59
Query: 99 GRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVR 158
GR++ L+ ++F G +++ A ++L++ R+L GLG G A IA+ P E R
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 159 GGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWL 218
G + G L L+ + G WR + A+ A++ VL
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAAL-------- 170
Query: 219 FMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLA 278
+ EE + + + + L
Sbjct: 171 -------------------LLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLA- 210
Query: 279 GAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF 338
++ Y P ++ G + LLL LA A+G ++ L D
Sbjct: 211 -----LLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLA-GLLGAIGRLLLGRLSDRL 264
Query: 339 GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 398
GR++ L +L +I++ + L+ ++ SS ++ L + F A + P
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTESSL---------WLLVALLLLGFGAGLVFPALN 315
Query: 399 TLNSEVYPEQYRGICGGMSATVNWISNLI 427
L S++ P++ RG G+ T + +
Sbjct: 316 ALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 115/498 (23%), Positives = 192/498 (38%), Gaps = 76/498 (15%)
Query: 36 VIAGIGGLLFGYDTGVIS------GALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
VIAG+G YD IS G + Y + S+ + + A +G + G
Sbjct: 19 VIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGS----ASIGTLAGQL 74
Query: 90 SGGWINDAYGRKKA---TLLADVVFTAGAIIMAAAPDPYV---LILGRLLVGLGVGIASV 143
GW+ D GRK+ L+ ++ T + + + V L R +G+G+G
Sbjct: 75 FFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP 134
Query: 144 TAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT-------EVPGT------- 189
+ + +E + + RG +++ M G +V L E
Sbjct: 135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGS 194
Query: 190 --------WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLE 241
WR ++G AVPA++ L +PE+PR+ + + ++E
Sbjct: 195 CVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE 254
Query: 242 DEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ---QFTGIN------ 292
E D + A+ K + K L G F F G+N
Sbjct: 255 AEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVI 314
Query: 293 -TVMYYSPTIVQMAGFQS---NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 348
+ + YSP ++ + L+ +A+AGT G V ++L+D GRK + L
Sbjct: 315 LSAIGYSPPAATNNAYEELYKTAVGNLI-IALAGT-VPGYWVTVFLVDIIGRKPI---QL 369
Query: 349 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP--VPWTLNSEVYP 406
G I VL F+ G + + +G++A+ LA + A F P VP EV+P
Sbjct: 370 MGFFILTVLF---FVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVP----GEVFP 422
Query: 407 EQYRGICGGMSATVNWISNLIVAQTFLTVAE----------LVGTGATFLILAGIAVLAV 456
+YR G+SA +I FL +A+ + G I A L +
Sbjct: 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI 482
Query: 457 VFVILFVPETQGLTFLEV 474
+F +L +PET+G + E+
Sbjct: 483 LFTLL-IPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 13/188 (6%)
Query: 277 LAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID 336
L L F G ++ Y P +Q S A LL +G ++G L D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 337 HFGRKK-LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP 395
GR++ L L L + L+LL+ A ++ L + F P
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAP------------SLALLLVALLLLGFGLGFAFP 284
Query: 396 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 455
TL SE+ P + RG G+ T + + + + G G FLILA +A+LA
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 456 VVFVILFV 463
+ ++L
Sbjct: 345 ALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 97/454 (21%), Positives = 175/454 (38%), Gaps = 55/454 (12%)
Query: 38 AGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA 97
A +G LL G+D +I+ L ++ +F + +++S A + G G + D
Sbjct: 25 AWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA---ASLISAAFISRWFGGLLLGAMGDR 81
Query: 98 YGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 157
YGR+ A +++ V+F+ G + AP + L + RL++G+G+ ++ Y+ E+ P +
Sbjct: 82 YGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL 141
Query: 158 R----GGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 212
R G L+S ++ + + Q S +V WR + + +P I L +P
Sbjct: 142 RNKASGFLISGFSIGAVVAAQVYSLVVP------VWGWRALFFIGILPIIFALWLRKNLP 195
Query: 213 ESPRWLFMKSDKEKAILVLSKIYDIARLEDEI--DHLSAAAEEELRKKKTVRYLDVFKSK 270
E+ W + K ++ +Y I +AAA V
Sbjct: 196 EAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIV---- 251
Query: 271 EIRLAFLAGAGLQAFQ-QFTGINTVM------------YYS-------PTIVQM-AGFQS 309
L L A +F Q +G YS PT ++ G+
Sbjct: 252 -AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDP 310
Query: 310 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS 369
+ +A +L + G AVG VG +L D G +K + SL +IS +L+ F G
Sbjct: 311 HTVANVLFFSGFG-AAVGCCVGGFLGDWLGTRKAYVCSL---LISQLLIIPVFAIGG--- 363
Query: 370 SSGVYGWIAVIGLALYI-AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 428
+ V+GL L+ G+ + L + + R G + V + +
Sbjct: 364 -----ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALA 418
Query: 429 AQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 462
+A+ + G L+ V+ +I
Sbjct: 419 PILGALIAQRLDLGTALASLSFSLTFVVILLIGL 452
|
Length = 496 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 8e-11
Identities = 84/397 (21%), Positives = 134/397 (33%), Gaps = 70/397 (17%)
Query: 47 YDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGA-----IVGAASGGWINDAYGRK 101
+D + A + + F + + + + A A +GA G D GRK
Sbjct: 7 FDFYLYGFAAVLVFHTFFPPSGDPLVA-LLATFATFAAGFLARPLGAIVFGHFGDRIGRK 65
Query: 102 KA-----------TLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA 150
K TLL ++ + I + A P +L+L RL+ G +G A +Y+A
Sbjct: 66 KTLVITLLMMGIGTLLIGLLPSYATIGIWA---PILLLLARLIQGFSLGGEWGGAALYLA 122
Query: 151 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-------WRWMLGVSAVPAII 203
E +P RG S + G L+ L L + + G WR VSAV +I
Sbjct: 123 EYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLI 182
Query: 204 QFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRY 263
L + E+P + + +K E L K
Sbjct: 183 GLYLRRNLEETPVFEKAQEKHKKK--------------------RGPIAETLTKH----- 217
Query: 264 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGT 323
R FL G GL T + Y PT + S ALL+ +
Sbjct: 218 ---------RKPFLLGLGL-VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLIL 267
Query: 324 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 383
+ + L D GR+ L + LL+ + S S + V+G+A
Sbjct: 268 FFITIPLSGALSDRIGRRP----VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMA 323
Query: 384 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV 420
L + MG E++P + R ++ +
Sbjct: 324 LIGGMYTGPMGSF----LPELFPTEVRYTGASLAYNL 356
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 87/391 (22%), Positives = 154/391 (39%), Gaps = 72/391 (18%)
Query: 78 SMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLG 137
S ++G + GA GG + D GRK+ +++ +F ++ A A D L++ RLL G+G
Sbjct: 57 SAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVG 116
Query: 138 VGIASVTAPVYIA---EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWML 194
+G A P IA EA +RG VS + G L+ ++ + WR +
Sbjct: 117 LGGA---LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV-LAAGDAAWRHIF 172
Query: 195 GV-SAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEE 253
V P ++ +LM ++PES + ++ VL ++ R
Sbjct: 173 YVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGR-------------- 218
Query: 254 ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMY----YSPTIVQMAGFQS 309
A A L + + V+Y + P+++ G
Sbjct: 219 ------------------------ATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSR 254
Query: 310 NQLALL-LSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA 368
+Q L+ ++ + G A+G+++ L+D +++ L AG++ SL L A
Sbjct: 255 SQAGLVQIAFNIGG--ALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL---------A 303
Query: 369 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI- 427
++ + + G A F G V + L YP Q RG G + V + ++
Sbjct: 304 AAPSF-AGMLLAGFAA--GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAG 360
Query: 428 --VAQTFLTVAELVGTGATFLILAGIAVLAV 456
+A L +G +I A I V+ V
Sbjct: 361 PLLAGQLLA----LGRSTVGVIGASIPVILV 387
|
Length = 406 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 57/221 (25%), Positives = 88/221 (39%), Gaps = 25/221 (11%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+VLGL ++A G + V+ L + D + + IV + G +VGA
Sbjct: 170 FVLGLALMAD------GVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL---GMMVGAF 220
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149
G + D GRK+ L+ V A + + RLL G G+G A Y
Sbjct: 221 FWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYF 280
Query: 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG--------------TWRWMLG 195
AE E RG +S + G Y +A+ +P +WR +
Sbjct: 281 AEFLAQEKRGEHLSWLCMFWMIGGI--YAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338
Query: 196 VSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 236
V A P + + FMPESPR+ ++A ++L I+D
Sbjct: 339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHD 379
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 88/431 (20%), Positives = 147/431 (34%), Gaps = 75/431 (17%)
Query: 40 IGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYG 99
+ G V G L I D V++ + Q +++ +G +GA +
Sbjct: 20 LAAFAIGTTEFVPVGLLPPIAADL-GVSEGAAGQ--LITAYALGVALGAPLLALLTGRLE 76
Query: 100 RKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 159
R++ L +F ++ A AP VL+L R L GL G+ A A P RG
Sbjct: 77 RRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG 136
Query: 160 --------GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRW-MLGVSAVPAIIQFVLMLF 210
GL VL + G FL L WR L ++ + + +L
Sbjct: 137 RALALVFTGLTLATVLGVPLGTFLGQLFG---------WRATFLAIAVLALLALLLLWKL 187
Query: 211 MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK 270
+P S +S + LR L + +
Sbjct: 188 LPPS-------------------------------EISGSLPGPLR-----TLLRLLRRP 211
Query: 271 EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIV 330
+ L LA L F Y P + +AGF + ++L+L LA +G ++
Sbjct: 212 GVLLGLLATF-LFMTGHFALYT---YIRPFLESVAGFSVSAVSLVL-LAFGIAGFIGNLL 266
Query: 331 GIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFA 390
G L D R+ L + L + L L G +A+ L L F
Sbjct: 267 GGRLADRGPRRALIAALLLLALALLALTFT-----------GASPALALALLFL-WGFAF 314
Query: 391 PGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG 450
T + + P+ + G ++ + + A V + +G AT + A
Sbjct: 315 SPALQGLQTRLARLAPDA-ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAA 373
Query: 451 IAVLAVVFVIL 461
+ +LA++ +L
Sbjct: 374 LLLLALLLALL 384
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 82 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIA 141
+G ++ + G + D +GRK L+ +F + A + + VLI+ R L G G A
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 142 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA 201
V IA+ P E RG + I G L + + G WR A+ A
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILA 127
Query: 202 IIQFVLMLF-MPES 214
+ F+L+ F +PE+
Sbjct: 128 LAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 76 IVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVG 135
++S AL+ GA G D YGR+ + + V+F+AG + AP + + RL++G
Sbjct: 52 LISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIG 111
Query: 136 LGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG-TWRWML 194
+G+G ++ Y+ E+ P +R + G ++ V V G WR +
Sbjct: 112 IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF 171
Query: 195 GVSAVPAIIQFVLMLFMPESPRW 217
+S +P I L +PE+ W
Sbjct: 172 FISILPIIFALWLRKNIPEAEDW 194
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 82/409 (20%), Positives = 144/409 (35%), Gaps = 50/409 (12%)
Query: 70 SFLQETIVSMALVGAIV-GAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD--PYV 126
++ + +++ A G + G + G K +L +++ GA + A Y
Sbjct: 46 TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYG 105
Query: 127 LILGRLLV-GLGVGIASVTAPVYIAEASPSEV---RGGLVST-NVLMITSG-QFLSYLVN 180
L L + G+G+ A Y+ E R L N L G S L+
Sbjct: 106 FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI- 164
Query: 181 LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 240
L +SA + S ++ ++ + L + + L
Sbjct: 165 --------LSGVALTMSAA---QILAIKGADASSVQFPYL------ILAGLLVLLAVLIL 207
Query: 241 EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT 300
++ L AA +F++K +RL LA + G V Y
Sbjct: 208 LSKLPDLQVAAPSLGASGSAG-LSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSY---- 262
Query: 301 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLS 359
+ ++ G Q A LS G VG +G L+ K LA +L +++ L +
Sbjct: 263 LEELLGLNEQQAAYYLSFFWVGF-MVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV-- 319
Query: 360 WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419
A I G +A+ L L I F M P ++L + E G +
Sbjct: 320 -ALIG----------GVVALYALFL-IGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMA 367
Query: 420 VNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 468
+ + I+ +A++ G TFLI+ + L V+F L +++G
Sbjct: 368 I--VGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKG 414
|
Length = 422 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 4e-07
Identities = 82/423 (19%), Positives = 157/423 (37%), Gaps = 44/423 (10%)
Query: 38 AGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA 97
A +G + G+D +I + IK D + + + A +G G A G + D
Sbjct: 23 AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAF---LATAAFIGRPFGGALFGLLADK 79
Query: 98 YGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 157
+GRK + + V ++ G + A +L L R +VG+G+ A Y E+ P +
Sbjct: 80 FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139
Query: 158 RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRW 217
+ + V G ++ +F E G WR V +P ++ + PES W
Sbjct: 140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARAPESKEW 198
Query: 218 LFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFL 277
E ++ ++ ++ +F + L
Sbjct: 199 ----------------------EEAKLSGKGKHSQSAW-SVFSLSMKGLFNRAQFPLTLC 235
Query: 278 AGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH 337
+ F F + PT + GF + ++ L++ A GT +G IV D
Sbjct: 236 --VFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGT-VLGNIVWGLCADR 292
Query: 338 FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY-IAFFAPGMGPV 396
G KK + G+++S + + F ++G L+ + G+G +
Sbjct: 293 IGLKK---TFSIGLLMSFLFIFPLFRIPQDNYL--------LLGACLFGLMATNVGVGGL 341
Query: 397 PWTLNSEVYPEQYRGICGGMSATVNWISNLI--VAQTFLTVAELVGTGATFLILAGIAVL 454
+ +P + RG+ G+ + S +A T+L + +G TF++ A +
Sbjct: 342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATI 401
Query: 455 AVV 457
++
Sbjct: 402 LLI 404
|
Length = 426 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 13/196 (6%)
Query: 277 LAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID 336
L L F + P + + G ++Q L++S G A+G+++ YL D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGY-ALGSLLAGYLSD 59
Query: 337 HFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 396
FGR+++ L L + +LL++A ++ + + P
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFA------------SSLWLLLVGRFLLGLGGGALYPA 107
Query: 397 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 456
L +E +P + RG G+ + + L+ +AE +G FLILA + +L
Sbjct: 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA 167
Query: 457 VFVILFVPETQGLTFL 472
+ ++ + L
Sbjct: 168 LLLLFLLRLLLLLALA 183
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 81/351 (23%), Positives = 137/351 (39%), Gaps = 70/351 (19%)
Query: 91 GGW----INDAYGRKKATLLADVVFTAGAIIMAAAPD--------PYVLILGRLLVGLGV 138
GGW I D +GRKK+ L++ + G++++A P P +L+L RL GL V
Sbjct: 79 GGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSV 138
Query: 139 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-------WR 191
G T+ Y++E + +G S + + GQ L+ LV + + WR
Sbjct: 139 GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWR 198
Query: 192 WMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAA 251
+ AV A++ L R L S +E A +
Sbjct: 199 IPFALGAVLAVVALWLR-------RQLDETSQQETR-----------------ALKEAGS 234
Query: 252 EEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQ 311
+ L + + ++ + L F A L F FT Y +V AG +N
Sbjct: 235 LKGLWRNR--------RAFIMVLGFTAAGSL-CFYTFT-----TYMQKYLVNTAGMHANV 280
Query: 312 LALLLSLAVAGTNAVGTIVGIYLIDHFGRKK--LALSSLAGVIISLVLLSWAFISGSSAS 369
+ +++ A+ + ++G L D GR+ L SLA + +L + +S
Sbjct: 281 ASGIMTAALFVFMLIQPLIGA-LSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP--- 336
Query: 370 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV 420
Y ++ AL I F + + L +E++P Q R + G+S V
Sbjct: 337 ----YAAFGLVMCALLIVSFYTSISGI---LKAEMFPAQVRALGVGLSYAV 380
|
Length = 432 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 57/288 (19%), Positives = 101/288 (35%), Gaps = 55/288 (19%)
Query: 104 TLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVS 163
+L ++ A I++ + +L LG LL G G+ + +V P I P V G +
Sbjct: 79 SLFLALLLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTG 137
Query: 164 TNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSD 223
+ +G L+ + + + G WR LG A+ A++ ++ L +
Sbjct: 138 LYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ------- 190
Query: 224 KEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAG--AG 281
S A K V V++S LA+ G
Sbjct: 191 ----------------------AASIAT-------KLVSVRKVWRS---PLAWQVTLFMG 218
Query: 282 LQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG-R 340
LQ+ + V+ + P I+ G + + LLSL ++ L +
Sbjct: 219 LQSLLYY----IVIGWLPAILIDRGLSAAEAGSLLSLMQLAQ-LPTALLIPLLARRSKNQ 273
Query: 341 KKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 388
+ L + +L +++ LV L A W ++GL AF
Sbjct: 274 RPLVVLALLLMLVGLVGLLL-------APGQLPILWALLLGLGQGGAF 314
|
Length = 395 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
Query: 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASG 91
L ++ + F G E + S+ ++S+ +G I+GA G
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 92 GWINDAYGRKKATLLADVVFTA-GAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA 150
G ++D GR++ LL ++ A G +++A AP +L++ LL+G G+G A +
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291
Query: 151 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 210
E +P E RG + G L L+ + G + + + A A++ +L+L
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLLLL 350
Query: 211 MP 212
+P
Sbjct: 351 LP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 66/345 (19%), Positives = 124/345 (35%), Gaps = 44/345 (12%)
Query: 91 GGWINDAYGRKKATLLADVVFTAGA-IIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149
G ++D + L ++ A + + +V+ L G+ G+ +
Sbjct: 50 MGSVSDRSN-PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTV 108
Query: 150 AEASPSEVRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAII-QFVL 207
+ RG VS N G L LV E+ +W W+ V + AII +
Sbjct: 109 TKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAIIVSLIC 167
Query: 208 MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK-TVRYLDV 266
L + +SP+ + +E +E D + EEEL KK+ ++Y+ +
Sbjct: 168 FLLLRDSPQSCGLPPAEEMPN-------------EEPDGDAEKKEEELTKKQIFLQYV-L 213
Query: 267 FKSKEIRLAFLAGAGLQAFQQFTGINT-VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNA 325
++ + + TGI Y + +++ L L
Sbjct: 214 LNKVLWYISL---GYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELG----GL 266
Query: 326 VGTIVGIYLIDHF---GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGL 382
VGT++ +L D R LA+ +A +I+SL L+ W + + +
Sbjct: 267 VGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSL-LVYWLNPAAN-------PLMDLICLF 318
Query: 383 ALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI 427
A + F G + + SE+ P++ G + V + + L
Sbjct: 319 A--LGFLVYGPQMLIGVIASELAPKK---AAGTAAGFVGFFAYLG 358
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 13/185 (7%)
Query: 282 LQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK 341
+ + G ++ LLL+ G A+ + L D FGR+
Sbjct: 4 AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGY-ALAQPLAGRLSDRFGRR 62
Query: 342 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLN 401
++ L L + L+LL +A ++ L + + P L
Sbjct: 63 RVLLIGLLLFALGLLLLLFA------------SSLWLLLVLRVLQGLGGGALFPAAAALI 110
Query: 402 SEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 461
++ +P + RG G+ + + + +A L G A FLILA +A+LA V L
Sbjct: 111 ADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170
Query: 462 FVPET 466
+P
Sbjct: 171 LLPRP 175
|
Length = 346 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 86/421 (20%), Positives = 142/421 (33%), Gaps = 55/421 (13%)
Query: 67 NQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKK---ATLLADVVFTAGAIIMAAAPD 123
S LQ I+S G I+ G++ Y K + V + I AA
Sbjct: 72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISI-VIPWAAGGG 130
Query: 124 PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAF 183
+++ R++ GL G S I + +P + R L+ M TSG L + L
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG----MSTSGFQLGTFIFLPI 186
Query: 184 TEVPGTWRWMLGV--------SAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIY 235
+ G G V + +F + P S EK + S
Sbjct: 187 S---GWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQ- 242
Query: 236 DIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVM 295
++ ++++ + KS + + A G F +
Sbjct: 243 ----------------GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGH-----FWLYTILP 281
Query: 296 YYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVII 353
Y PT + + + LL SL G YL D K L+L++ +
Sbjct: 282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAG-YLADFLKSSKTLSLTAARKIFN 340
Query: 354 SL-VLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL-NSEVYPEQYRG 411
+ L F S+ Y + +I L L A GP+ L NS ++ G
Sbjct: 341 GIGGLGPGIFAYALPYLSAAFY--LTIIILTLANAV---SSGPLAGVLINSLDLAPRFLG 395
Query: 412 ICGGMSATVNWISNLIVAQ---TFLTVAELVGTGATFLILAGIAVLAVVFVILFV-PETQ 467
G++ +I LI + L+ FLI+A + +L V+F ++F E Q
Sbjct: 396 FIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQ 455
Query: 468 G 468
Sbjct: 456 D 456
|
[Transport and binding proteins, Anions]. Length = 465 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.98 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.92 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.92 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.91 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.89 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.88 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.86 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.86 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.86 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.85 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.85 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.84 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.84 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.81 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.81 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.79 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.79 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.77 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.72 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.7 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.69 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.67 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.66 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.65 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.63 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.62 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.56 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.55 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.51 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.5 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.47 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.47 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.39 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.36 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.35 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.34 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.33 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.32 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.29 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.26 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.26 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.25 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.24 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.22 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.22 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.22 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.2 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.19 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.18 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.16 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.15 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.13 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.12 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.1 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.08 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.07 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.07 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.07 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.07 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.06 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.06 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.06 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.05 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.04 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.04 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.03 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.02 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.02 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.02 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.01 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.99 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.99 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.99 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.99 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.98 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.98 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.97 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.96 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.94 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.94 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.94 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.92 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.92 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.89 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.88 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.88 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.88 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.86 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.86 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.86 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.85 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.84 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.84 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.83 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.83 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.82 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.81 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.79 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.77 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.77 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.76 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.74 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.74 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.72 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.71 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.7 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.69 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.66 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.66 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.65 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.64 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.63 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.62 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.58 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.58 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.58 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.57 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.57 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.56 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.55 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.55 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.54 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.54 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.54 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.51 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.51 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.47 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.43 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.42 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.42 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.41 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.41 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.4 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.4 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.33 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.31 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.29 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.25 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.18 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.16 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.09 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.08 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.05 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.02 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.99 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.99 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.98 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.96 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.88 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.86 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.75 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.74 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.7 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.66 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.57 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.56 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.53 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.51 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.45 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.29 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.19 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.17 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.1 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.08 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.08 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.97 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.94 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.86 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.82 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.78 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.7 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.53 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.51 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.9 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.89 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.84 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.71 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.38 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.37 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.31 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.23 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 94.14 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.84 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.83 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.58 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 92.24 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 91.76 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 91.04 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 90.71 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.84 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 89.75 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 89.49 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 88.25 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 87.61 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.52 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 85.69 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 85.22 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 82.71 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=418.05 Aligned_cols=450 Identities=31% Similarity=0.577 Sum_probs=381.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccc-----c------ccchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 010848 28 NMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAV-----N------QSSFLQETIVSMALVGAIVGAASGGWIND 96 (499)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~-----~------~~~~~~~~~~s~~~lg~~ig~~~~g~l~D 96 (499)
.+++..+++++++++|.+||+.+.+|...+.+.+-.+.+ + .-+..++.+++++.+|.++|+++.++++|
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~ 85 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD 85 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888999999999999877765432211 1 12334578899999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHH
Q 010848 97 AYGRKKATLLADVVFTAGAIIMAA---APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQ 173 (499)
Q Consensus 97 r~Grr~~l~~~~~l~~~~~~~~~~---a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~ 173 (499)
|+|||..+.++.++...++++..+ ++++++++++|++.|+..|......+.|+.|.+|.+.||........+..+|.
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 999999999999998888876654 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-ccCCCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhh-cCCHHHHHHHHHHhhChhhHHHHHHHHHHHH
Q 010848 174 FLSYLVNLA-FTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFM-KSDKEKAILVLSKIYDIARLEDEIDHLSAAA 251 (499)
Q Consensus 174 ~l~~~~~~~-~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 251 (499)
+++..++.- +......|++.+....+++++.++..+++||||||+.. |+|+++|++.++++++..+.+++.++..++.
T Consensus 166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~ 245 (485)
T KOG0569|consen 166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI 245 (485)
T ss_pred HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 999776643 33344569999999999999999999999999999998 8999999999999999987777666655544
Q ss_pred HHHHh-hhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Q 010848 252 EEELR-KKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIV 330 (499)
Q Consensus 252 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
+++.. +++..+.++++++++.++.....+.+...+++.+.+.+.+|...+++..|++... +.+.+......+.+.+++
T Consensus 246 ~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~-a~~an~~~g~v~~~~t~~ 324 (485)
T KOG0569|consen 246 EEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE-AQYANLGIGIVNLLSTLV 324 (485)
T ss_pred HHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 44332 2356678999999999999888888999999999999999999999999998655 445556666678999999
Q ss_pred HHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhh
Q 010848 331 GIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR 410 (499)
Q Consensus 331 ~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 410 (499)
+.+++||.|||++++.+..++.+..+++........... .+..+..+.+...+...++.|.+|++|.+.+|++|++.|
T Consensus 325 ~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R 402 (485)
T KOG0569|consen 325 SPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR 402 (485)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence 999999999999999888877777666654433222111 344556677788888999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHhhcc
Q 010848 411 GICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKER 481 (499)
Q Consensus 411 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~~~~ 481 (499)
+.+.+....++|+.+++..+.++++.+..|. ..|.+|.+.+.+..++.++++||||||+..|+.+.++++
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999887 789999999999999999999999999999998888766
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=386.92 Aligned_cols=453 Identities=42% Similarity=0.678 Sum_probs=370.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhc--hhcchhhHHhhhhhhccccccc----hhHHHHHHHHHHHHHHHHHhhhhhhhhhchh
Q 010848 28 NMYVLGLTVIAGIGGLLFGYD--TGVISGALLYIKDDFEAVNQSS----FLQETIVSMALVGAIVGAASGGWINDAYGRK 101 (499)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~g~~--~~~i~~~~~~i~~~~~~~~~~~----~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr 101 (499)
++.....+..+.++.+..|+| .+..+.....+.++........ ..++++.+...+|..+|++++|+++|++|||
T Consensus 40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk 119 (513)
T KOG0254|consen 40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK 119 (513)
T ss_pred ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 446667778888999999998 6677777777776543222111 2348899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhh
Q 010848 102 KATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNL 181 (499)
Q Consensus 102 ~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 181 (499)
+.++++.+++.++++++++++|..+++++|+++|+|.|....+.+.|++|++|++.||...+..+....+|.++++..+.
T Consensus 120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hccCCCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhC--hhhHHHHHHHHHHHHHHHHh-hh
Q 010848 182 AFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD--IARLEDEIDHLSAAAEEELR-KK 258 (499)
Q Consensus 182 ~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~ 258 (499)
.......+||..+.+..+++++..+..+++||||+|+.++++.++++..+.++.+ ..+.+.+.+.+......+.. .+
T Consensus 200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
T KOG0254|consen 200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE 279 (513)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence 6543223699999999999999888888899999999999999999999999988 44555555544421111111 11
Q ss_pred cccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010848 259 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF 338 (499)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 338 (499)
....+.++++ |..++....+.....++|+++.+...+|.+.+++..|..... ...++.......++..++.+++||+
T Consensus 280 ~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~ 356 (513)
T KOG0254|consen 280 GKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRF 356 (513)
T ss_pred ccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1123445555 666777777888889999999999999999999999987553 3444555556788888999999999
Q ss_pred CChHHHHHhhHHHHHHHHHHHHHHhhCCCCC-CCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHH
Q 010848 339 GRKKLALSSLAGVIISLVLLSWAFISGSSAS-SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMS 417 (499)
Q Consensus 339 grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 417 (499)
|||+.++.+..++.++.+++........... ......+..+...+++...+..+.++++|.+.+|.+|.+.|+++.+++
T Consensus 357 gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~ 436 (513)
T KOG0254|consen 357 GRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLA 436 (513)
T ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHH
Confidence 9999999999999999888876654433221 223455677777888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH-HHHHhcccCCCCCHHHHHHHhhcccc
Q 010848 418 ATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV-FVILFVPETQGLTFLEVEQMWKERAW 483 (499)
Q Consensus 418 ~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~pet~~~~l~~~~~~~~~~~~ 483 (499)
...+++.+.+....++...+..+....|.++++.+.+... +++++.|||||+++||+++.++++..
T Consensus 437 ~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 437 VAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence 9999999998888888776665545678888888888877 78899999999999999999887653
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=368.34 Aligned_cols=438 Identities=22% Similarity=0.304 Sum_probs=306.8
Q ss_pred cchhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhh-cc-ccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHH
Q 010848 26 FSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDF-EA-VNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKA 103 (499)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~-~~-~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~ 103 (499)
+-.+.++.++.+++++.+.+|||.+.++...|.+.+++ +. ...++..++++.+.+.+|+.+|++++|+++||+|||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 33456778888889999999999999999999887653 21 12234456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHH
Q 010848 104 TLLADVVFTAGAIIMAAAPD------PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSY 177 (499)
Q Consensus 104 l~~~~~l~~~~~~~~~~a~s------~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~ 177 (499)
+.++++++.+++++++++++ +..++++|+++|++.|...+..+.+++|++|+++||+..+.......+|.++++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876 789999999999999999999999999999999999999999988888888888
Q ss_pred HhhhhccC----------------------CCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHH-HHHHHHHHh
Q 010848 178 LVNLAFTE----------------------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKI 234 (499)
Q Consensus 178 ~~~~~~~~----------------------~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~-~a~~~~~~~ 234 (499)
.++..+.. ...+||++|.+.++++++.++..+++||||+|+..+++++ ++.+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 76654311 1126999999999999888888889999999999877764 455555554
Q ss_pred hChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcch---hhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCch
Q 010848 235 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK---EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQ 311 (499)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~ 311 (499)
.+.+..+ +.++.++ .+++ +++...+++++++++ +.++..+......+. +....+....+.|.+++..|++...
T Consensus 249 ~~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~p~i~~~~G~~~~~ 324 (502)
T TIGR00887 249 LQVKIEA-EPDEVEK-ASTA-VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFL-LDIAFYGVNLNQKVILSAIGYSPPA 324 (502)
T ss_pred hcccccc-Ccccccc-hhcc-ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHccccccHHHHHHHcCCCCc
Confidence 3321110 0000000 0000 000112456666532 222222221111122 2222334555688888888876432
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHH
Q 010848 312 LA-----------LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 380 (499)
Q Consensus 312 ~~-----------~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (499)
.+ .........+.+++.+++++++||+|||+.+..+.....++..++........ . .... .
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~----~--~~~~--~ 396 (502)
T TIGR00887 325 ATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS----T--HGFL--A 396 (502)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc----h--hHHH--H
Confidence 11 11122223345668888999999999999887766655555544443221100 0 0111 1
Q ss_pred HHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCchhhHHHHH
Q 010848 381 GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV----------GTGATFLILAG 450 (499)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~----------~~~~~f~~~~~ 450 (499)
...++..++..+.++..+.+.+|.+|++.|+++.|+.+.++++++++++.+++.+.+.. +....|+++++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 476 (502)
T TIGR00887 397 IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFAL 476 (502)
T ss_pred HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHH
Confidence 12222233455667788889999999999999999999999999999999988877632 33457788888
Q ss_pred HHHHHHHHHHHhcccCCCCCHHHHHH
Q 010848 451 IAVLAVVFVILFVPETQGLTFLEVEQ 476 (499)
Q Consensus 451 ~~~~~~~~~~~~~pet~~~~l~~~~~ 476 (499)
.++++.+. ++++||||+|++||+++
T Consensus 477 ~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 477 FMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHH-heEeccCCCCCHHhhhC
Confidence 88777654 46789999999998864
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=355.72 Aligned_cols=438 Identities=34% Similarity=0.601 Sum_probs=321.9
Q ss_pred hHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccc-----cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHH
Q 010848 29 MYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAV-----NQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKA 103 (499)
Q Consensus 29 ~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~-----~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~ 103 (499)
+.+.+++..++++.+.+|||.++++...|.++++|... +.+....+++.+.+.+|..+|++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 45677888888999999999999999999999988431 3345567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc---------Cc---hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHH
Q 010848 104 TLLADVVFTAGAIIMAAA---------PD---PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITS 171 (499)
Q Consensus 104 l~~~~~l~~~~~~~~~~a---------~s---~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~ 171 (499)
++.+..++.++++.++++ ++ +..+++.|+++|++.|+..+...++++|++|+++||+.++..+.....
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 22 567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccC-------CCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHH
Q 010848 172 GQFLSYLVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 244 (499)
Q Consensus 172 G~~l~~~~~~~~~~-------~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 244 (499)
|..+++.++..+.. ...+||+.|++.+++.++..+..+++||+|+|+..+++.++++...++..+....++..
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQAL 247 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHH
Confidence 99988877654421 12369999999988887777667789999999988888887776666655433322222
Q ss_pred HHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHH
Q 010848 245 DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTN 324 (499)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~ 324 (499)
++......++ +++. ...+.- .............+++..+.+...++.|.+.+..|.+..... ..........
T Consensus 248 ~~~~~~~~~~--~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~-~~~~~~~~~~ 319 (479)
T PRK10077 248 QEIKHSLDHG--RKTG---GKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVIN 319 (479)
T ss_pred HHHHHHHHHh--hhhh---hhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHH
Confidence 2221111100 0000 111110 111122222333455566666667788988888887755433 3444455567
Q ss_pred HHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccccccccccccc
Q 010848 325 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEV 404 (499)
Q Consensus 325 ~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 404 (499)
.++.+++++++||+|||+.+..+..+..++..++...... +. ........+.++...+..+..+..+.+.+|.
T Consensus 320 ~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 392 (479)
T PRK10077 320 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--QA-----PGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 392 (479)
T ss_pred HHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc--Cc-----ccHHHHHHHHHHHHHHhccccchhHHHhHhh
Confidence 8899999999999999999888777766666555432211 10 0112222333333344444567788999999
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHh
Q 010848 405 YPEQYRGICGGMSATVNWISNLIVAQTFLTVA------ELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMW 478 (499)
Q Consensus 405 ~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~ 478 (499)
+|++.|+++.|+....+++++.+++..++.+. +..++...|++++++++++.+..+++.||||++++||+++.+
T Consensus 393 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 472 (479)
T PRK10077 393 FPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALW 472 (479)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence 99999999999999999999998887776544 356667788888888888877777889999999999998887
Q ss_pred hcc
Q 010848 479 KER 481 (499)
Q Consensus 479 ~~~ 481 (499)
+++
T Consensus 473 ~~~ 475 (479)
T PRK10077 473 EPE 475 (479)
T ss_pred hhc
Confidence 654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=351.01 Aligned_cols=425 Identities=20% Similarity=0.256 Sum_probs=308.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHH
Q 010848 28 NMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLA 107 (499)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~ 107 (499)
.+.++.+.++++++.+.+++|..+++..+|.+.++++. +....+++.+++.+|+++|++++|+++||+|||++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl---s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI---PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 45677788888899999999999999999999988865 334457889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC-
Q 010848 108 DVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV- 186 (499)
Q Consensus 108 ~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~- 186 (499)
++++++++++++++++++.++++|+++|++.|+..++..++++|++|+++||..++....++.+|.++++.++..+...
T Consensus 239 lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 239 LSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999998888888888887765443221
Q ss_pred -----------CCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhH-----HHHH--HHHH
Q 010848 187 -----------PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL-----EDEI--DHLS 248 (499)
Q Consensus 187 -----------~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~ 248 (499)
..+||+.+++.+++.++.++..+++||||+|+..+++.+++.+++++++..+.. .+.. ...+
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~ 398 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK 398 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence 136999999999988888888888999999999999999999999888764321 1100 0010
Q ss_pred HHHH-H-----HHhhhc----------------ccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHc-
Q 010848 249 AAAE-E-----ELRKKK----------------TVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA- 305 (499)
Q Consensus 249 ~~~~-~-----~~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 305 (499)
.... + +...+. ...++++|+.+..+..++. ...+ +....+++....|.|.+++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l-~~~w-f~~~~~yygl~~w~P~~~~~~~ 476 (742)
T TIGR01299 399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKL-MGVW-FTLSFGYYGLSVWFPDMIKHLQ 476 (742)
T ss_pred HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 000000 0024456655544443333 3333 333345667777888764321
Q ss_pred -----------------------------------------CC-----C-------------------------------
Q 010848 306 -----------------------------------------GF-----Q------------------------------- 308 (499)
Q Consensus 306 -----------------------------------------g~-----~------------------------------- 308 (499)
|+ .
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 556 (742)
T TIGR01299 477 ADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLF 556 (742)
T ss_pred HHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhc
Confidence 00 0
Q ss_pred ---------------------------------C---chHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHH
Q 010848 309 ---------------------------------S---NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVI 352 (499)
Q Consensus 309 ---------------------------------~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 352 (499)
+ ....+.......++.+++.+++++++||+|||+++..+.++..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsa 636 (742)
T TIGR01299 557 ENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSC 636 (742)
T ss_pred cccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0 0012233444455678999999999999999999887777666
Q ss_pred HHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 010848 353 ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF 432 (499)
Q Consensus 353 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~ 432 (499)
++.+++.+.. + .. + .++... ...++..+..+..+++++|.+|++.|+++.|+.++.+++++++++.+.
T Consensus 637 i~~ll~~~~~----s-----~~-~-ll~~~~-l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 637 ISCFFLSFGN----S-----ES-A-MIALLC-LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHHHHHHHHc----c-----HH-H-HHHHHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544321 0 01 1 111111 222233344566778999999999999999999999999999999888
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCH
Q 010848 433 LTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTF 471 (499)
Q Consensus 433 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l 471 (499)
+.+.+. +...+|++++++.++++++. .++|||+++.+
T Consensus 705 g~L~~~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~l 741 (742)
T TIGR01299 705 GSFVGI-TKAAPILFASAALACGGLLA-LKLPDTRGQVL 741 (742)
T ss_pred HHHHHh-hhHHHHHHHHHHHHHHHHHH-HhCCCCccccc
Confidence 766654 34457777777777765554 46699999864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-49 Score=399.80 Aligned_cols=435 Identities=36% Similarity=0.646 Sum_probs=330.3
Q ss_pred HHHHHhhhhhhchhcchhhHHhhhhhhc-cccc-------cchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 010848 37 IAGIGGLLFGYDTGVISGALLYIKDDFE-AVNQ-------SSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108 (499)
Q Consensus 37 ~~~l~~~~~g~~~~~i~~~~~~i~~~~~-~~~~-------~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~ 108 (499)
+++++++.+|||...++...+......+ ..+. ++...++..+...+|..+|++++|+++||+|||++++++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~ 83 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA 83 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 4567889999999998877765542211 1111 2235678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC---chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC
Q 010848 109 VVFTAGAIIMAAAP---DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE 185 (499)
Q Consensus 109 ~l~~~~~~~~~~a~---s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~ 185 (499)
++..++++++++++ +++.+.++|+++|++.|+..+..+.|+.|..|+++||+..+..+..+..|.+++..++.....
T Consensus 84 ~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 163 (451)
T PF00083_consen 84 LLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY 163 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999 999999999999999999999999999999999999999999999999999888877665533
Q ss_pred CC--CchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccch
Q 010848 186 VP--GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRY 263 (499)
Q Consensus 186 ~~--~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (499)
.. .+||+.+++.++++++.++...++||||+|+..++|.+|+++.++++++.+..+++.++..++.++.. ++...+
T Consensus 164 ~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (451)
T PF00083_consen 164 YSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ--ESKASW 241 (451)
T ss_pred ccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc--ccceee
Confidence 22 25999999999999888788888999999999999999999998886655433333322222111111 111456
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Q 010848 264 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKL 343 (499)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~ 343 (499)
++++++++.++.++....+..++++.+.+...+|.|.+.+..+.+.. ...+........++.+++.+++||+|||++
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~ 318 (451)
T PF00083_consen 242 RDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKL 318 (451)
T ss_pred eeccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence 67777765444455555566677777777778888888887777655 233334444567788888899999999998
Q ss_pred HHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHH
Q 010848 344 ALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI 423 (499)
Q Consensus 344 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l 423 (499)
++.+.....++...+........+.. .......+....++...+..+.++..+.+.+|.||++.|+++.+++...+++
T Consensus 319 ~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i 396 (451)
T PF00083_consen 319 LIIGLLLMAICSLILGIIFFLGVSSS--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI 396 (451)
T ss_pred cccccccccccccccccccccccccc--cccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 88777666665554431011111110 0011222233333444566678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHh
Q 010848 424 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMW 478 (499)
Q Consensus 424 ~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~~~~~~~ 478 (499)
++++.+...+.+.+..+....+.++++++++..+++++++||||||++||++++|
T Consensus 397 ~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 397 GGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 9988888888777666645688888888888888889999999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=313.66 Aligned_cols=443 Identities=40% Similarity=0.670 Sum_probs=315.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccc-----cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchh
Q 010848 27 SNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAV-----NQSSFLQETIVSMALVGAIVGAASGGWINDAYGRK 101 (499)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~-----~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr 101 (499)
++++.+..+.++.++.+..++|...++...|.+..+++.. +.+....+++.+++.++..++++++|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 3456666777777888999999999999999988877643 12345678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHH
Q 010848 102 KATLLADVVFTAGAIIMAAAP---DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYL 178 (499)
Q Consensus 102 ~~l~~~~~l~~~~~~~~~~a~---s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~ 178 (499)
+++..+.+++.++++++.+++ +++.+++.|+++|++.|...+....+++|++|+++|++..+.......+|..+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999986644 34589999999999999999999999999999999999999999999999999998
Q ss_pred hh---hhccCCCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHH----HHHHHHHH
Q 010848 179 VN---LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDE----IDHLSAAA 251 (499)
Q Consensus 179 ~~---~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~ 251 (499)
++ ..... ..+||+.|++.++..++.++..+++||+|+++..+++.+++.+...+.......+.+ .+......
T Consensus 182 ~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 182 FGSGKVSLNN-TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHhhcCCC-CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 87 43333 346999999977777776666778899999887777666655444433221111111 11101111
Q ss_pred HHHHhhhcccchhhhhcchh-hHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Q 010848 252 EEELRKKKTVRYLDVFKSKE-IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIV 330 (499)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
+.+.+.+ ...+.+.++..+ .............+.+....+...++.|.+.+..|++....+ ...........++.++
T Consensus 261 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 338 (481)
T TIGR00879 261 SIEKRSV-QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF-LVSIIVGAVNFAFTFV 338 (481)
T ss_pred HHHHhhc-cccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 1111111 111233333211 112222222333444444555667788888888888875444 4444455557889999
Q ss_pred HHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhh
Q 010848 331 GIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR 410 (499)
Q Consensus 331 ~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 410 (499)
++++.||++||+.+..+.....++...+........... .....+..+....++...+..+..+..+.+..|.+|++.|
T Consensus 339 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (481)
T TIGR00879 339 AIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS-SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417 (481)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc-ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence 999999999999887776555555444432211111100 0001122233333344455556667778888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 010848 411 GICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 473 (499)
Q Consensus 411 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~~ 473 (499)
+++.++.....++++++++...+.+.+..++...|++++++++++++..+++.||+|+++++|
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 999999999999999999998888888888888899999998888888888889999988764
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=316.12 Aligned_cols=404 Identities=17% Similarity=0.172 Sum_probs=262.3
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhhhhcccccc--chhHHH-HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQS--SFLQET-IVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~--~~~~~~-~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~ 108 (499)
....+.++++.++++||.++++...|.+.++|+...+. ++...+ +.++.++++.+|++++|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34556667899999999999999999999998643222 111112 257888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhH--------HHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhh
Q 010848 109 VVFTAGAIIMAAAPDPYV--------LILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN 180 (499)
Q Consensus 109 ~l~~~~~~~~~~a~s~~~--------li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~ 180 (499)
++++++++++++++|+.. +++.|+++|++.|+.++...++++|++|+|+||+..+....+...|..++..+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 899999999999999999999999999999999999888877777777776544
Q ss_pred hhccC-------CCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHH
Q 010848 181 LAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEE 253 (499)
Q Consensus 181 ~~~~~-------~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (499)
..+.. ...+||+.|++.++++++.++++..+||||+|...+++.++.. . +
T Consensus 175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------------------~-~ 231 (490)
T PRK10642 175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------------------R-E 231 (490)
T ss_pred HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------------------c-c
Confidence 32211 1247999999988777766666677999998754322111100 0 0
Q ss_pred HHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 010848 254 ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGI 332 (499)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 332 (499)
...+++..++.+++++. ++.+...... .+......+....|.|.+++ ..|++...... .......+..++.+++|
T Consensus 232 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~-~~~~~~~~~~~~~~~~g 307 (490)
T PRK10642 232 GLQDGPKVSFKEIATKH--WRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSEDHGVL-IIIAIMIGMLFVQPVMG 307 (490)
T ss_pred cccccccCCHHHHHHHh--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 00001112344455431 1112211111 11112233445567788775 56776554333 33444445678888999
Q ss_pred HHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhh
Q 010848 333 YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGI 412 (499)
Q Consensus 333 ~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 412 (499)
+++||+|||+.+..+.....+......... ... . . .....+..+.......+ .+....+.+|.+|++.|++
T Consensus 308 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~--~----~-~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg~ 378 (490)
T PRK10642 308 LLSDRFGRRPFVILGSVALFVLAIPAFILI-NSN--V----I-GLIFAGLLMLAVILNCF-TGVMASTLPAMFPTHIRYS 378 (490)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hCC--C----H-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCccchH
Confidence 999999999987665543222222211111 110 0 1 11111111111111111 1233456679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 010848 413 CGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILFVPETQGLTFL 472 (499)
Q Consensus 413 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~ 472 (499)
+.|..+....+++.+++.....+.+..+ +..++++....++++.+ ..+++|||+++.++
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~~ 438 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCCC
Confidence 9998777777777777877777666543 44455555555555544 34567999876553
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=306.84 Aligned_cols=437 Identities=23% Similarity=0.333 Sum_probs=300.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhh-cccc----ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhch
Q 010848 26 FSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDF-EAVN----QSSFLQETIVSMALVGAIVGAASGGWINDAYGR 100 (499)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~-~~~~----~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Gr 100 (499)
..++++...+++++.|-|.|+||..+|+...|.+..-+ |... -.+-..+.+..+..+|.++||+++|+++||+||
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44788999999999999999999999999888776544 3221 233345678889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHH
Q 010848 101 KKATLLADVVFTAGAIIMAAAPD-------PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQ 173 (499)
Q Consensus 101 r~~l~~~~~l~~~~~~~~~~a~s-------~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~ 173 (499)
|+++...+++..+++++++++.. ..++.+.|++.|+|.|+.+|.+.++.+|.+-.++||...+........|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 99999999999999998887532 47889999999999999999999999999999999988766555555555
Q ss_pred HHHHHhhhhc----cCC----------CCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcC-CHHHHHHHHHHhhChh
Q 010848 174 FLSYLVNLAF----TEV----------PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKS-DKEKAILVLSKIYDIA 238 (499)
Q Consensus 174 ~l~~~~~~~~----~~~----------~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~-~~~~a~~~~~~~~~~~ 238 (499)
+.|.+++..+ ... .+-||..|.++++|+++.+..++.+|||++|-.... |.+.+..-..+..+.
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~- 272 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV- 272 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc-
Confidence 5544433322 111 113999999999999999999999999999864322 222222111111110
Q ss_pred hHHHHHHHHHHHHHHHHhhhccc----chhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHH
Q 010848 239 RLEDEIDHLSAAAEEELRKKKTV----RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL 314 (499)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~ 314 (499)
+.+ ++.+.+...+.+. .+...|..++. +.++..... .+..=..++....+...+++..|+.+.....
T Consensus 273 ~~~-------~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~-WFllDiafy~~nL~~s~I~~~ig~~~~~~~~ 343 (538)
T KOG0252|consen 273 DIE-------AESTAESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGT-WFLLDIAFYGQNLFQSVIFSAIGVIPSANTY 343 (538)
T ss_pred ccc-------hhhccccCCCCcccccchHHHHHHHHHH-HHHHHHHHH-HHhhhhhhhccccHHHHHHHhhccCCCcchH
Confidence 000 0000000111111 12233333321 222222222 2222234455555666777777765443222
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHH
Q 010848 315 --------LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYI 386 (499)
Q Consensus 315 --------~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (499)
...+......+.|..+...++|++|||.+.+.++.++.+..+.+...+.. .. ...+. .+...+..
T Consensus 344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~----~~-~~~Gf--~v~y~l~~ 416 (538)
T KOG0252|consen 344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ----LE-NTIGF--VVLYSLTF 416 (538)
T ss_pred HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc----cc-ccCce--eehHHHHH
Confidence 11222222334466677789999999999998888777766665543221 11 11122 22233344
Q ss_pred HHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCchhhHHHHHHHHHHHHHHHH
Q 010848 387 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE-----LVGTGATFLILAGIAVLAVVFVIL 461 (499)
Q Consensus 387 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~~ 461 (499)
.+.+.|.+.....+.+|.||+++|+++.|++.+.+.++++++...+....+ ..+...++++++++++++.++. +
T Consensus 417 ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~ 495 (538)
T KOG0252|consen 417 FFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-L 495 (538)
T ss_pred HHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-E
Confidence 556677788888999999999999999999999999999999999988887 6677889999999999886654 5
Q ss_pred hcccCCCCCHHHHHHHhhc
Q 010848 462 FVPETQGLTFLEVEQMWKE 480 (499)
Q Consensus 462 ~~pet~~~~l~~~~~~~~~ 480 (499)
++||||+|++||++..++.
T Consensus 496 l~pEtk~~~leei~~e~~~ 514 (538)
T KOG0252|consen 496 LIPETKGKSLEEISNEEES 514 (538)
T ss_pred EeecccccCHHHhcChhhc
Confidence 6789999999999665543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=317.89 Aligned_cols=393 Identities=25% Similarity=0.352 Sum_probs=281.0
Q ss_pred hhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010848 54 GALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLL 133 (499)
Q Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l 133 (499)
...|.+.+||+..+++.+..++..+++.+|+++|++++|+++||+|||+++.++.++..++++++++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45677889998877677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccC
Q 010848 134 VGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 213 (499)
Q Consensus 134 ~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpe 213 (499)
+|++.|...+....++.|++|+++|+...+....+..+|.++++.++..+. +||+.|++.+++.++..+..+++||
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999988889999999888876543 4999999999888887777788999
Q ss_pred ChhHHhhcCCHHHHHHHHHHhhChhhH--HHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCc
Q 010848 214 SPRWLFMKSDKEKAILVLSKIYDIARL--EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGI 291 (499)
Q Consensus 214 sp~~l~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (499)
||+|+..+++.+++.+..++....+.. .++......+ +++.++++....++++++|+++...+.........
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----- 339 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE-KDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT----- 339 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhh-hhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH-----
Confidence 999999999988888777665433221 1111111001 11111112245678888888776654432221111
Q ss_pred ceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCC
Q 010848 292 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS 371 (499)
Q Consensus 292 ~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (499)
....+..+.+.+..+.+. ...........+++.++++++.||+|||+.+..+.....++.+++... . ...
T Consensus 340 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~---~-~~~-- 409 (505)
T TIGR00898 340 AFSYYGLVLDLGNLGGNI----YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV---P-VDL-- 409 (505)
T ss_pred HHHHHHHhccccccCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---C-CCc--
Confidence 111112222233333332 222233444567888999999999999998877766555554443321 1 110
Q ss_pred chhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Q 010848 372 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGI 451 (499)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~ 451 (499)
.+...... +...+...+..+..+.+.+|.+|++.|+++.|+.+..+++++++++.+.. . +..+...++.++++.
T Consensus 410 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~ 483 (505)
T TIGR00898 410 ---YFLRTALA-VLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGL 483 (505)
T ss_pred ---hHHHHHHH-HHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHH
Confidence 01111111 11112222233566788899999999999999999999999998888776 3 334455677888877
Q ss_pred HHHHHHHHHHhcccCCCCCHHH
Q 010848 452 AVLAVVFVILFVPETQGLTFLE 473 (499)
Q Consensus 452 ~~~~~~~~~~~~pet~~~~l~~ 473 (499)
.+++.+. .+++|||++++++|
T Consensus 484 ~~~~~~~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 484 ALLAGIL-TLFLPETKGVPLPE 504 (505)
T ss_pred HHHHHHH-HHcCcCCCCCCCCC
Confidence 7777555 45789999998765
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=299.89 Aligned_cols=394 Identities=21% Similarity=0.230 Sum_probs=251.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccch---hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHH
Q 010848 27 SNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSF---LQETIVSMALVGAIVGAASGGWINDAYGRKKA 103 (499)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~---~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~ 103 (499)
.+++.++....+.++.+.+++|...++...|.+.++++..+.+.. ..+...+..+++..+|++++|+++||+||||+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~ 95 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS 95 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 344455566666789999999999999999999999864222222 22334556667777999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchh--------HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHH
Q 010848 104 TLLADVVFTAGAIIMAAAPDPY--------VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFL 175 (499)
Q Consensus 104 l~~~~~l~~~~~~~~~~a~s~~--------~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l 175 (499)
+..+.++++++++++++++++. .+++.|+++|++.|+..+...++++|++|+++||+..+....+...|.++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL 175 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 58999999999999999999999999999999999888877777777777
Q ss_pred HHHhhhhccC-------CCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHH
Q 010848 176 SYLVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLS 248 (499)
Q Consensus 176 ~~~~~~~~~~-------~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 248 (499)
++.+...+.. ...+||+.|++.++++++.+.++..+||+|++.. +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~---------------------- 227 (432)
T PRK10406 176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET------R---------------------- 227 (432)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h----------------------
Confidence 7665433321 1247999999998888877666667888875310 0
Q ss_pred HHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHH
Q 010848 249 AAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVG 327 (499)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 327 (499)
+. ++..++++++++++.+...+.. .+......+....|.|.+++ ..|.+..+.+....+.... ..++
T Consensus 228 ----~~---~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~-~~i~ 295 (432)
T PRK10406 228 ----AL---KEAGSLKGLWRNRRAFIMVLGF----TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFV-FMLI 295 (432)
T ss_pred ----hh---cccccHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHH
Confidence 00 0011345566665443322211 11111123334456777764 5677766655555544443 4667
Q ss_pred HHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcc
Q 010848 328 TIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE 407 (499)
Q Consensus 328 ~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 407 (499)
..+.|+++||++||+..........+....+.... ...+ ..........+..+...+ ..+..+.+.+|.+|+
T Consensus 296 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~fp~ 367 (432)
T PRK10406 296 QPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-QNVS----SPYAAFGLVMCALLIVSF---YTSISGILKAEMFPA 367 (432)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HcCC----cHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCC
Confidence 77889999999999876554333222221111111 1100 011111111111111111 123455778999999
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHHHHHhcccCCCCCH
Q 010848 408 QYRGICGGMSATVNWIS-NLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILFVPETQGLTF 471 (499)
Q Consensus 408 ~~r~~~~g~~~~~~~l~-~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l 471 (499)
+.|+++.|+++..+++. +...+.+... .+..+ +...+++.++..+++.+..++ .++++|+.
T Consensus 368 ~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~~ 430 (432)
T PRK10406 368 QVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKGM 430 (432)
T ss_pred CccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH--hhhccccc
Confidence 99999999999876652 3334444443 34445 333444444555555444333 45556653
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=282.66 Aligned_cols=390 Identities=16% Similarity=0.163 Sum_probs=248.3
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHh-hhhhhccccccchhHHHHH-----HHHHHHHHHHHHhhhhhhhhhchhHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLY-IKDDFEAVNQSSFLQETIV-----SMALVGAIVGAASGGWINDAYGRKKATL 105 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~-i~~~~~~~~~~~~~~~~~~-----s~~~lg~~ig~~~~g~l~Dr~Grr~~l~ 105 (499)
.+....+.++.+.++||..+++...|. +.+++.. +.+.. .+++. ++.+++..+|+++.|+++||+|||+++.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFP-QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 345666677999999999999887765 4444411 11111 23332 4566778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCchh--------HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHH
Q 010848 106 LADVVFTAGAIIMAAAPDPY--------VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSY 177 (499)
Q Consensus 106 ~~~~l~~~~~~~~~~a~s~~--------~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~ 177 (499)
++..+++++++++++++|+. .+++.|+++|++.|+.++....++.|++|+|+||+..+....+...|.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 5889999999999999999999999999999999999888888888888876
Q ss_pred HhhhhccC-------CCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 010848 178 LVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAA 250 (499)
Q Consensus 178 ~~~~~~~~-------~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 250 (499)
.+...+.. ...+||+.|++.+++.++...+....||+|+|...+++.++
T Consensus 179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------------------ 234 (438)
T PRK09952 179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------------------ 234 (438)
T ss_pred HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------------------------
Confidence 55433321 12379999999988776655555678999876432211100
Q ss_pred HHHHHhhhcccchh-hhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHH
Q 010848 251 AEEELRKKKTVRYL-DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGT 328 (499)
Q Consensus 251 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 328 (499)
.++..+.. .++++++.+...... .+......+....+.|.+.+ ..|.+....... .........++.
T Consensus 235 ------~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~-~~~~g~~~~i~~ 303 (438)
T PRK09952 235 ------AKKRIPVIEALLRHPGAFLKIIAL----RLCELLTMYIVTAFALNYSTQNLGLPRELFLNI-GLLVGGLSCLTI 303 (438)
T ss_pred ------ccccCCHHHHHHHchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHHH
Confidence 00001111 233344333222111 11111223333445666654 566665432222 222333457788
Q ss_pred HHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcch
Q 010848 329 IVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ 408 (499)
Q Consensus 329 ~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 408 (499)
++.|+++||+|||+.+..+.....++...+..... ..+ ..+.......+. .+......+..+++.+|.+|++
T Consensus 304 ~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~l~-~~~~~~~~~~~~~~~~e~~p~~ 375 (438)
T PRK09952 304 PCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-AQS------IFWIVFFSIMLA-NIAHDMVVCVQQPMFTEMFGAS 375 (438)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-cCC------hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCcc
Confidence 89999999999999877665444333322221111 110 011111111111 1111122345568889999999
Q ss_pred hhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHc--CCchhhHHHHHHHHHHHHHHHHhcccCC
Q 010848 409 YRGICGGMSATVNW-ISNLIVAQTFLTVAELV--GTGATFLILAGIAVLAVVFVILFVPETQ 467 (499)
Q Consensus 409 ~r~~~~g~~~~~~~-l~~~i~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~pet~ 467 (499)
.|+++.++.+..+. +++.+.+.+...+.+.. +|...+.+.+...+++.+. .+..|||+
T Consensus 376 ~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~~~ 436 (438)
T PRK09952 376 YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLMKDNQ 436 (438)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHccccc
Confidence 99999998877654 67778888887776643 3445556555555555444 34567754
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=254.74 Aligned_cols=420 Identities=22% Similarity=0.233 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH
Q 010848 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADV 109 (499)
Q Consensus 30 ~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~ 109 (499)
.++...+.+..+...+.+..-..+...|.....++. +.-.+++++...+.|+.+|+..+|.++|++||||.+.+...
T Consensus 75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~---s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP---SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch---hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 344444455555554444433333344444455542 33345778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCc
Q 010848 110 VFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT 189 (499)
Q Consensus 110 l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 189 (499)
...+.....+++||+..+.+.|.+.|+|.|+ .|...++-.|.-|..+|+..+-.. ..+.+|++....+.+...... |
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-g 228 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-G 228 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-h
Confidence 9999999999999999999999999999999 899999999999999998776555 889999999988887766544 6
Q ss_pred hHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHH--------HHHHHHHHH-----HHHHh
Q 010848 190 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLED--------EIDHLSAAA-----EEELR 256 (499)
Q Consensus 190 Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~ 256 (499)
|||.......|..+...+.+++|||||++..++++++|.+.++++...+..+. ..+...++. .+...
T Consensus 229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a 308 (528)
T KOG0253|consen 229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSA 308 (528)
T ss_pred HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcc
Confidence 99998888888888888889999999999999999999999999876543211 001111110 00000
Q ss_pred -hhcccchhhhhcchhhHHHHHHHHHHHHHHhccCccee-----------------hhchHHHHHHc-C-CCCchHHHHH
Q 010848 257 -KKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTV-----------------MYYSPTIVQMA-G-FQSNQLALLL 316 (499)
Q Consensus 257 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~p~~~~~~-g-~~~~~~~~~~ 316 (499)
++......+++. |++++..+.-...++...+. .+.. ....|+..+.. + -.....-+.-
T Consensus 309 ~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd 386 (528)
T KOG0253|consen 309 AKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD 386 (528)
T ss_pred ccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence 111222334443 44444333221111111111 0111 11223333321 0 0112223444
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccccc
Q 010848 317 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 396 (499)
Q Consensus 317 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (499)
.+......+.|.++.++++||+|||+.+...++...++..++.. +.+.+. ...+.+..-.+..+....
T Consensus 387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~--c~~rn~----------~tvllf~arafisg~fqv 454 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT--CKTRNA----------YTVLLFTARAFISGAFQV 454 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--hcCcch----------hHHHHHHHHHHHhchheE
Confidence 55556678999999999999999999987776665555544432 222211 111122223344456678
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCH
Q 010848 397 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTF 471 (499)
Q Consensus 397 ~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l 471 (499)
.|+|..|.+|+..|+++.|.+.+++++++++.+++. +........+..+++++++++.+.++++--|||||++
T Consensus 455 aYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 455 AYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred EEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 899999999999999999999999999999888776 2222334467788888888888888787779999975
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=283.43 Aligned_cols=391 Identities=21% Similarity=0.266 Sum_probs=268.4
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhh
Q 010848 63 FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIAS 142 (499)
Q Consensus 63 ~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~ 142 (499)
++..+.+.+...+..+.+++|.++|++++|+++||+|||+++++++++.+++.+++++++|++.+++.|+++|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 55566777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcC
Q 010848 143 VTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKS 222 (499)
Q Consensus 143 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~ 222 (499)
.++..+++|+.++++|+..... ......+..+++..+..+.. +|||.+++..++.++.++.+++.||||||+..++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 9999999999999999999988 44444455555544444443 6999999999999988777667789999999999
Q ss_pred CHHHHHHHHHHhhChh----hHHHHHHHHHHHH-HHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhc
Q 010848 223 DKEKAILVLSKIYDIA----RLEDEIDHLSAAA-EEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYY 297 (499)
Q Consensus 223 ~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (499)
+.+++.+.+++..+.+ ...+..+...... .+....++.....++++.+++++..+.....+. .+....+-
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-----~~~~~y~g 340 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF-----VFSLVYYG 340 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH-----HHhHHHHh
Confidence 9999999888875432 1111111111111 111111223457788888876665544332221 11111111
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHH
Q 010848 298 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 377 (499)
Q Consensus 298 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 377 (499)
.+......|.+.. ............+....+...|+.|||.....+.....++.+...+..... . . ...+.
T Consensus 341 l~~~~~~lg~~~~----~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~ 411 (521)
T KOG0255|consen 341 LSLNVSGLGGNIY----LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL--G-G--WLHWI 411 (521)
T ss_pred hhhhhhhcCchHH----HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc--h-h--HHHHH
Confidence 2222233333221 222222234566777778999999999998877776666666555432111 0 0 01111
Q ss_pred HHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q 010848 378 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 457 (499)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 457 (499)
. ..+...+...+. ...+.+.+|.+|+.+|..+.+...+..++++++.+.+...... ......+.+++....+...
T Consensus 412 ~---~~~~~~~~~~~~-~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 412 L---PLLGKFFIGSAF-NLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGL 486 (521)
T ss_pred H---HHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHH
Confidence 1 111111111122 2337888999999999999999999999999888776544333 3333344446777777777
Q ss_pred HHHHhcccCCCCCHHHHHH
Q 010848 458 FVILFVPETQGLTFLEVEQ 476 (499)
Q Consensus 458 ~~~~~~pet~~~~l~~~~~ 476 (499)
.+.+++|||+++++.|..+
T Consensus 487 ~~~~~lpet~~~~l~~t~~ 505 (521)
T KOG0255|consen 487 LSLLLLPETKGKPLPGTLL 505 (521)
T ss_pred HHHhcCcccCCCCCchhHH
Confidence 7778999999999966443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=272.30 Aligned_cols=371 Identities=20% Similarity=0.239 Sum_probs=256.2
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVF 111 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~ 111 (499)
......+.++.+.+++|...+....|.+.++++.. ....+++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s---~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLT---DMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455666788889999999999999999998753 334577899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchH
Q 010848 112 TAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWR 191 (499)
Q Consensus 112 ~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr 191 (499)
++++++++++++++.++++|+++|++.|...+....++.|++|+|+|++..+....+..+|.++++.+...+.+. .+||
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-~~w~ 172 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-YGWR 172 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-CCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988776555443 3699
Q ss_pred HHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchh
Q 010848 192 WMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKE 271 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (499)
+.|++..++.++.+.+....||++++..++.+.++ + .++...+.....++++++++.
T Consensus 173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---------------~--------~~~~~~~~~~~~~~~~~~~~~ 229 (426)
T PRK12307 173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKG---------------K--------HSQSAWSVFSLSMKGLFNRAQ 229 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccc---------------c--------ccccchhhhhHHHHHHHhhch
Confidence 99998765554444444446777654321110000 0 000000000113456677666
Q ss_pred hHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHH
Q 010848 272 IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGV 351 (499)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 351 (499)
++........ .+..+........+.|.+++..|.+....+..... ...+..++.++.+++.||++||+.+..+....
T Consensus 230 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~ 306 (426)
T PRK12307 230 FPLTLCVFIV--LFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTA-AAFGTVLGNIVWGLCADRIGLKKTFSIGLLMS 306 (426)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5543322111 11112222223446788887778776665555443 34457889999999999999999877665544
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 010848 352 IISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQT 431 (499)
Q Consensus 352 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~ 431 (499)
.+....+.. . ... . . .......+...+...+..+..+.+..|.+|++.|+++.|+......+++.+++..
T Consensus 307 ~~~~~~~~~--~-~~~----~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~ 376 (426)
T PRK12307 307 FLFIFPLFR--I-PQD----N-Y--LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMA 376 (426)
T ss_pred HHHHHHHHH--H-ccc----c-H--HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHH
Confidence 433322221 1 110 0 1 1111111111122223334455677899999999999999999999999888888
Q ss_pred HHHHHHHcCCc
Q 010848 432 FLTVAELVGTG 442 (499)
Q Consensus 432 ~~~~~~~~~~~ 442 (499)
...+.+..++.
T Consensus 377 ~g~l~~~~g~~ 387 (426)
T PRK12307 377 ATWLGITMGLG 387 (426)
T ss_pred HHHHHHcccHH
Confidence 88887777654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=269.99 Aligned_cols=391 Identities=16% Similarity=0.186 Sum_probs=240.1
Q ss_pred HHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHH-----HHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 010848 34 LTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIV-----SMALVGAIVGAASGGWINDAYGRKKATLLAD 108 (499)
Q Consensus 34 ~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~-----s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~ 108 (499)
......++.+.+.+|.+.++...|.+.+|++..+.+.. .+.. ....++..+|+++.|+++||+||||+++.+.
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 93 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA--SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence 45566679999999999999999999999975433211 1122 2234444689999999999999999999999
Q ss_pred HHHHHHHHHHHhcCchh--------HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhh
Q 010848 109 VVFTAGAIIMAAAPDPY--------VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN 180 (499)
Q Consensus 109 ~l~~~~~~~~~~a~s~~--------~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~ 180 (499)
.++.+++++++++++++ .+++.|+++|++.|...+....+++|++|+|+|++.++........|..+++.++
T Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 4689999999999999999999999999999999999988877777776666655
Q ss_pred hhccC-------CCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHH
Q 010848 181 LAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEE 253 (499)
Q Consensus 181 ~~~~~-------~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (499)
..+.. ...+||+.|++..+...+........||++++..+++
T Consensus 174 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~------------------------------- 222 (434)
T PRK15075 174 YLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH------------------------------- 222 (434)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-------------------------------
Confidence 54321 1246999999865543333333333455432210000
Q ss_pred HHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 010848 254 ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGI 332 (499)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g 332 (499)
+.+.....++..++++.+ ...... .+.+....+....|.|.++++ .|++..+.+.. ......+..++.+++|
T Consensus 223 --~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~g 295 (434)
T PRK15075 223 --RPSMREIFRSLAANWRIV---LAGMLM-VAMTTVSFYLITVYTPTFGKTVLHLSAADSLLV-TLCVGVSNFIWLPIGG 295 (434)
T ss_pred --ccccccHHHHHHHhHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 000000011112222111 111111 111222344556678888765 68876654443 3444455788999999
Q ss_pred HHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhh
Q 010848 333 YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGI 412 (499)
Q Consensus 333 ~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 412 (499)
++.||+|||+....+.....+...... ..... .. . .......... ....+. ...+..+.+..|.+|++.|++
T Consensus 296 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~-~~---~-~~~~~~~~~~-~~~~~g-~~~~~~~~~~~e~~p~~~rg~ 367 (434)
T PRK15075 296 ALSDRIGRRPVLIAFTVLAILTAYPAL-SWLVA-AP---S-FARMLAVELW-LSFLYG-SYNGAMVVALTEVMPAEVRTA 367 (434)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHc-CC---c-hHHHHHHHHH-HHHHHH-HHHhhHHHHHHHHCCCCccch
Confidence 999999999987654333222111111 11111 11 0 1111111111 111111 122344567889999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 010848 413 CGGMSATVNWI-SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFL 472 (499)
Q Consensus 413 ~~g~~~~~~~l-~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~ 472 (499)
+.++.+.++.. ++.+++...+.+.+..++.....++.....++..+..+..++.++..++
T Consensus 368 ~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK15075 368 GFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQ 428 (434)
T ss_pred heeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhh
Confidence 99987666554 4667777788778877754222222222223333344556666665554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=256.38 Aligned_cols=371 Identities=21% Similarity=0.244 Sum_probs=274.8
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVF 111 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~ 111 (499)
+......++++|..|.++.++...+|.|.+|++.+. ...|+.+|+|.+++.+++++...+.||+.||++++..+.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~---~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSE---GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 345566678999999999999999999999997533 34588999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchH
Q 010848 112 TAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWR 191 (499)
Q Consensus 112 ~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr 191 (499)
.++++++++++||+.++++|++.|++.|..++....+..+..|+++|+++++....+.+.+.++|..+|..+.+.. |||
T Consensus 89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GWR 167 (394)
T COG2814 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWR 167 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888777654 599
Q ss_pred HHHHhhhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcch
Q 010848 192 WMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK 270 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (499)
+.|+..+..+++.++.. ..+| |+... ++ +..+..+..+.+++|
T Consensus 168 ~~F~~ia~l~ll~~~~~~~~lP--~~~~~--~~--------------------------------~~~~~~~~~~~l~~p 211 (394)
T COG2814 168 ATFLAIAVLALLALLLLWKLLP--PSEIS--GS--------------------------------LPGPLRTLLRLLRRP 211 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CccCC--CC--------------------------------CCcchhHHHHHhcCc
Confidence 99999998888866664 5678 22100 00 000011234567777
Q ss_pred hhHHHHHHHHHHHHHHhccCccee-hhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhH
Q 010848 271 EIRLAFLAGAGLQAFQQFTGINTV-MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLA 349 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 349 (499)
.++........ .+.+.+.. .|..|++.+..|++....+..+ +.++++.++|+.++|++.|| +.|+.+.....
T Consensus 212 ~v~~~l~~t~l-----~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~L-l~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~ 284 (394)
T COG2814 212 GVLLGLLATFL-----FMTGHFALYTYIRPFLESVAGFSVSAVSLVL-LAFGIAGFIGNLLGGRLADR-GPRRALIAALL 284 (394)
T ss_pred hHHHHHHHHHH-----HHcchhhhHHhHHHHHHHccCCCHhHHHHHH-HHHHHHHHHHHHHHhhhccc-cchhHHHHHHH
Confidence 77766554322 22333333 4555777778888877777655 44556689999999999999 77777665555
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHH
Q 010848 350 GVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVA 429 (499)
Q Consensus 350 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~ 429 (499)
...+.+..+.+. .. ..+..+....++. +.........+...++ .-++.+..+.++.....+++...+.
T Consensus 285 l~a~~~l~l~~~---~~-------~~~~~~~~~~~wg-~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA 352 (394)
T COG2814 285 LLALALLALTFT---GA-------SPALALALLFLWG-FAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGA 352 (394)
T ss_pred HHHHHHHHHHHh---cc-------hHHHHHHHHHHHH-HHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHH
Confidence 444444443321 11 1122222222221 1111111222233344 3457788999999999999999998
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHH
Q 010848 430 QTFLTVAELVGTGATFLILAGIAVLAVVFVIL 461 (499)
Q Consensus 430 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 461 (499)
..-..+.++.|+....++.+.+.+++.+....
T Consensus 353 ~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 353 ALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 88888889888888888888888877666544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=270.70 Aligned_cols=393 Identities=16% Similarity=0.139 Sum_probs=256.4
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVF 111 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~ 111 (499)
+.+.+.+.++.+.+.+|...++...|.+++|++. +....+++.+.+.+++.+++++.|+++||+|||+++..+++++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL---SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 4556666678888999999999999999999864 3445688999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC-----
Q 010848 112 TAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV----- 186 (499)
Q Consensus 112 ~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~----- 186 (499)
+++++++++++|++.+++.|+++|++.|...+....++.|++|+++|++.++.+......|..+++.++..+...
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998887665421
Q ss_pred CCchHHHHHhhhHHHHHHHH-HHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhh
Q 010848 187 PGTWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLD 265 (499)
Q Consensus 187 ~~~Wr~~f~~~~~~~~l~~~-~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (499)
..+||+.|++.++++++..+ .++++||+|+.... .++++.+...+.... ... +.+..+... ++...+....+++
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~-~~~--~~~~~~~~~-~~~~~~~~~~~~~ 238 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDN-DQL--TLEQPEGAF-AHAAMPQRSMLRE 238 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHh-ccc--ccccccccc-ccccccHHHHHHH
Confidence 23799999998887766544 44667999853100 011111111110000 000 000000000 0000000011223
Q ss_pred hhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Q 010848 266 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA--GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKL 343 (499)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~ 343 (499)
++ ++.++..... .+......+....|.|.++++. +.+....+... .....+..++.+++|+++||++||+.
T Consensus 239 ~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~-~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 239 IF-TPAIMLYTLA-----YFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLA-AIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred hc-ChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHh-hHHHHHHHHHHHHHHHHhcccCccHH
Confidence 33 3333322111 1222223444556888888875 44444444443 44445578999999999999997764
Q ss_pred H-HHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHH
Q 010848 344 A-LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 422 (499)
Q Consensus 344 ~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 422 (499)
. ........+.. ++. .. . .. . ......+.+.. +......+..+....|.+|++.|+++.|+.+...+
T Consensus 312 ~~~~~~~~~~~~~-~~~--~~-~-~~---~---~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~ 379 (412)
T TIGR02332 312 HTALPYLFAAAGW-LLA--SA-T-DH---N---LIQLLGIIMAS-MGSFSAMAIFWTTPDQSISLQARAIAIAVINATGN 379 (412)
T ss_pred HHHHHHHHHHHHH-HHH--Hh-c-CC---H---HHHHHHHHHHH-HHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhh
Confidence 3 22222222221 111 11 1 10 0 11111111111 11111223344556788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC-CchhhHHHHHH
Q 010848 423 ISNLIVAQTFLTVAELVG-TGATFLILAGI 451 (499)
Q Consensus 423 l~~~i~~~~~~~~~~~~~-~~~~f~~~~~~ 451 (499)
+++++++...+.+.+..| |...+.+++++
T Consensus 380 ~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 380 IGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999988888777664 66666655543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=269.88 Aligned_cols=385 Identities=14% Similarity=0.093 Sum_probs=256.8
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVF 111 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~ 111 (499)
+.....++++.++..+|.++++.++|.+.+|+|... ...+|+.+.+.+++..+++++|+++||+|||+++.++.+++
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~---~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~ 81 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASG---NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456677788999999999999999999999997532 33577899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcC-CcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCch
Q 010848 112 TAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEAS-PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTW 190 (499)
Q Consensus 112 ~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~W 190 (499)
.+++++|++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++..+.......+|..+++.++..+.+.. +|
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-gw 160 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-YW 160 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-Ch
Confidence 999999999999999999999999999999988888887765 6789999999999999999999999988887654 59
Q ss_pred HHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHH----HhhChhh-------HHHHH-------HHHHHHH
Q 010848 191 RWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLS----KIYDIAR-------LEDEI-------DHLSAAA 251 (499)
Q Consensus 191 r~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~----~~~~~~~-------~~~~~-------~~~~~~~ 251 (499)
||.|++..+..++.+++ .+++||+|+...++.|......... ....... ..... .......
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~ 240 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI 240 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence 99999988776665544 4567887642111122111110000 0000000 00000 0000011
Q ss_pred HHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHH
Q 010848 252 EEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIV 330 (499)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
..+.+.+.+....+++++|.+....+..... ........++.|.+++. .|+++.+.+... .+...+..+++++
T Consensus 241 ~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~-~~~~~~~~~~~~~ 314 (495)
T PRK14995 241 RTQLAASRPMIDMRLFTHRIILSGVVMAMTA-----MITLVGFELLMAQELQFVHGLSPLEAGMFM-LPVMVASGFSGPI 314 (495)
T ss_pred HHHhcCCCCCcCHHHhCCcccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHH
Confidence 1222223333345788887765544332211 11223334566777764 677776666544 4555567889999
Q ss_pred HHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhh
Q 010848 331 GIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR 410 (499)
Q Consensus 331 ~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 410 (499)
.|++.||+|+|+.+..+.....++...+... .... .....+ ....+.....+ ...+.......+..|++.+
T Consensus 315 ~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~~~--~~~~~~---~~~~l~G~g~g-~~~~~~~~~~~~~~~~~~~ 385 (495)
T PRK14995 315 AGILVSRLGLRLVATGGMALSALSFYGLAMT---DFST--QQWQAW---GLMALLGFSAA-SALLASTSAIMAAAPPEKA 385 (495)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cCCC--chHHHH---HHHHHHHHhHH-HHHHHHHHHHHhcCCHHhc
Confidence 9999999999988766665554444333221 1111 111111 11111111111 1123334556678899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 411 GICGGMSATVNWISNLIVAQTFLTV 435 (499)
Q Consensus 411 ~~~~g~~~~~~~l~~~i~~~~~~~~ 435 (499)
+.+.++.+....+++.++..+...+
T Consensus 386 g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 386 AAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888877766555444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=260.63 Aligned_cols=386 Identities=19% Similarity=0.240 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 010848 29 MYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108 (499)
Q Consensus 29 ~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~ 108 (499)
++.++....+.++.+.+++|...++...|.++++++.. ....+++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s---~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLT---TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34556666677899999999999999999999998753 334578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCC-
Q 010848 109 VVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVP- 187 (499)
Q Consensus 109 ~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~- 187 (499)
++..+++++++++++++.+++.|+++|++.+...+....++.|++|+++|++..+.......+|..+++.++..+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988776654432
Q ss_pred CchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhh
Q 010848 188 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF 267 (499)
Q Consensus 188 ~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (499)
.+||+.|++.+++.++.++....+||+|++..+++++++.....++...... . .++..++ .....++..
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~-~~~~~~~~~ 233 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH------R----IANIVMT-LAAAMVQSA 233 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch------h----hhhhhhh-hhHHhhhhh
Confidence 2599999988777776666666789987654332221111111110000000 0 0000000 000000000
Q ss_pred cchhhHHHHHHHHHHHHHHhccCcceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Q 010848 268 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS 346 (499)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 346 (499)
++.+..+........+.... ......+.|.++ +..|.+..+.+.+... ...+..++.++.+++.||++||+.+..
T Consensus 234 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~-~~~~~~~g~~~~g~l~dr~g~~~~~~~ 309 (405)
T TIGR00891 234 --GKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVF-SNIGAIVGGCVFGFLGDWLGRRKAYVC 309 (405)
T ss_pred --hhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCchhhhHH
Confidence 11111111111111111111 112223455555 4568777666655544 344578999999999999999998765
Q ss_pred hhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHH
Q 010848 347 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL 426 (499)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~ 426 (499)
+.....+...... . ... . . +...... ....+...+..+....+.+|.+|++.|+++.|+.+....++..
T Consensus 310 ~~~~~~~~~~~~~--~-~~~----~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 378 (405)
T TIGR00891 310 SLLAGQLLIIPVF--A-IGA----N--V-AVLGLGL-FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA 378 (405)
T ss_pred HHHHHHHHHHHHH--H-hCC----c--h-HHHHHHH-HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHH
Confidence 5443322211111 1 111 0 1 1111111 1122233344455667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-Cch
Q 010848 427 IVAQTFLTVAELVG-TGA 443 (499)
Q Consensus 427 i~~~~~~~~~~~~~-~~~ 443 (499)
+++...+.+.+..| +..
T Consensus 379 ~g~~~~g~l~~~~g~~~~ 396 (405)
T TIGR00891 379 LAPIIGALLAQRLDEYGT 396 (405)
T ss_pred HHHHHHHHHHHhccccch
Confidence 99999998888877 543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=262.27 Aligned_cols=377 Identities=20% Similarity=0.234 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH
Q 010848 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADV 109 (499)
Q Consensus 30 ~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~ 109 (499)
+.+.....+.+..+.+++|....+...|.+.+|++. +....+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGL---DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 566677777788999999999999999999999864 33446889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCc
Q 010848 110 VFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT 189 (499)
Q Consensus 110 l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 189 (499)
+..++.++++++++++.+++.|+++|++.+...+....++.|++|+|+|++.++....+..+|..+++.++..+.+. .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~ 167 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD-AA 167 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887665543 36
Q ss_pred hHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhc
Q 010848 190 WRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFK 268 (499)
Q Consensus 190 Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (499)
||+.|++.++..++..+. ..++||+|++...++++++... . ....++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~-----------~~~~~~ 215 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP---------------------V-----------LRALFG 215 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh---------------------h-----------HHHHhh
Confidence 999999877655554443 4568998875432211110000 0 000011
Q ss_pred ch---hhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Q 010848 269 SK---EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL 345 (499)
Q Consensus 269 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 345 (499)
.+ ..+..... . +......+....+.|.+.++.|.+....+...... ..+..++.++.|++.||++||+.+.
T Consensus 216 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (406)
T PRK11551 216 EGRATATLLLWIS-Y----FFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAF-NIGGALGSLLIGALMDRLRPRRVVL 289 (406)
T ss_pred hhhhhHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 11111111 1 11111122334567888888888776666655444 4457899999999999999998876
Q ss_pred HhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHH
Q 010848 346 SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN 425 (499)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~ 425 (499)
.......++...+.. ..+ . +.. ....+...+...+..+..+++..|.+|++.|+++.|+.+....++.
T Consensus 290 ~~~~~~~~~~~~~~~----~~~-----~--~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 290 LIYAGILASLAALAA----APS-----F--AGM-LLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS 357 (406)
T ss_pred HHHHHHHHHHHHHHh----cCc-----H--HHH-HHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence 544433333322211 110 1 111 1111122222223445666788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHHHH
Q 010848 426 LIVAQTFLTVAELVGT-GATFLILAGIAVLAVVFVI 460 (499)
Q Consensus 426 ~i~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~~~ 460 (499)
.+++.+.+.+.+..+. ...++......+++.+..+
T Consensus 358 ~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 358 MAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999888887775433 3334444444444433333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=267.11 Aligned_cols=397 Identities=15% Similarity=0.105 Sum_probs=263.9
Q ss_pred HHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH
Q 010848 33 GLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFT 112 (499)
Q Consensus 33 ~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~ 112 (499)
.+.....++.+...+|...++..+|.+.++++. +....+++.+.+.+++.+++++.|+++||+|||+++.++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGL---SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 344445567777788888888889999888865 33446889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHH
Q 010848 113 AGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRW 192 (499)
Q Consensus 113 ~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~ 192 (499)
++++++++++|++.+++.|++.|++.|...+....++.|++|+++|++.++.......+|..+++.+...+.+. .+||+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~ 178 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-YGWRY 178 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877666543 36999
Q ss_pred HHHhhhHHHHHHH-HHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchh-----hh
Q 010848 193 MLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYL-----DV 266 (499)
Q Consensus 193 ~f~~~~~~~~l~~-~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l 266 (499)
.|++.+++.++.. +..+++||+|++...+.+.+...+. + +.+++. +++..+.+ ..
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----------~-------~~~~~~-~~~~~~~~~~~~~~~ 239 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-----------L-------ELAQQQ-EGAGLSRKEILTKYV 239 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-----------c-------ccchhc-cccCCChhhhHHHHH
Confidence 9999887665543 3445678888653211110000000 0 000000 00001111 13
Q ss_pred hcchhhHHHHHHHHHHHHHHhccCcceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHH
Q 010848 267 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKKL 343 (499)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~ 343 (499)
++++.++....... ........+..+.|.++ +..|++..+.+...... ..+..++.+++|++.||+ ++|+.
T Consensus 240 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~-~~~~~~g~~~~g~l~dr~~~~~r~~ 313 (434)
T PRK11663 240 LLNPYIWLLSFSYV-----LVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMF-ELGGFIGALVAGWGSDKLFNGNRGP 313 (434)
T ss_pred hcChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH-HHHHHHHHHHHhhhHHHhccCCccH
Confidence 44555443322211 11111223345677777 45688776655554443 445789999999999998 33332
Q ss_pred H-HHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHH
Q 010848 344 A-LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 422 (499)
Q Consensus 344 ~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 422 (499)
. .....+..+....+.. . . .. . ..+.... .+...++..+..........|.+|++.|+++.|+.++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~-~--~-~~--~--~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 383 (434)
T PRK11663 314 MNLIFAAGILLSVGSLWL-M--P-FA--S--YVMQAAC--FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAY 383 (434)
T ss_pred HHHHHHHHHHHHHHHHHH-c--c-cc--c--HHHHHHH--HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHH
Confidence 2 2211121212111111 1 1 10 1 1111111 1111112222222233456899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 423 ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 423 l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
++..+++...+.+.+..|+...|++.+++.+++.+..+...++.++
T Consensus 384 ~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 384 LGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAP 429 (434)
T ss_pred HHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 9999999999999998899888888888888777666555544433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=270.74 Aligned_cols=398 Identities=17% Similarity=0.117 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH
Q 010848 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADV 109 (499)
Q Consensus 30 ~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~ 109 (499)
..+.+.....++.+....|...++.+.|.+.+|++. +....+++.+++.+++.+++++.|+++||+|||+++.++.+
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 355566666677788888999999999999999875 33456889999999999999999999999999999988888
Q ss_pred HHHHHHHHHHh-----cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc
Q 010848 110 VFTAGAIIMAA-----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 184 (499)
Q Consensus 110 l~~~~~~~~~~-----a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~ 184 (499)
++++++.+.++ +++++.+++.|+++|++.|...+....+++|++|+++||++++.......+|..+++.+.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88777766554 6899999999999999999999999999999999999999999988888888888877654333
Q ss_pred CC--CCchHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcc-
Q 010848 185 EV--PGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKT- 260 (499)
Q Consensus 185 ~~--~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 260 (499)
.. .++||..|.+.+++.++..+. +++.+|+|+.....+ .++. ... ...++ +.+.+.++...
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~-~~~~------~~~--~~~~~------~~~~~~~~~~~~ 247 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK-AEEI------FGE--PISEE------DKETESTDMTKW 247 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC-hhhc------ccC--ccchh------hhccccccCcHH
Confidence 21 235999988877766655444 344577665321111 1110 000 00000 00000000000
Q ss_pred c-chhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010848 261 V-RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF 338 (499)
Q Consensus 261 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 338 (499)
. ..++.++++.++...+... + ..........+.|.|++ ..|.+..+.+..... ...+..++.+++|+++||+
T Consensus 248 ~~~~~~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~-~~~~~~ig~~~~G~lsDr~ 321 (467)
T PRK09556 248 QIFVEYVLKNPVIWLLCFANI----F-LYIVRIGIDNWSPVYAFQELGFSKEDAINTFTL-FEIGALVGSLLWGWLSDLA 321 (467)
T ss_pred HHHHHHHHcChHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 0 0122566766654433321 1 11122334567787775 578877666555443 3445789999999999999
Q ss_pred CChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHH
Q 010848 339 GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA 418 (499)
Q Consensus 339 grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 418 (499)
+||+..........+...++.. .... . .. .. ..... ..++...+..........|.+|++.|+++.|+.+
T Consensus 322 g~r~~~~~~~~~~~~~~~~~~~--~~~~----~-~~-~~-~~~~~-~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~ 391 (467)
T PRK09556 322 NGRRALVACIALALIIFTLGVY--QHAT----S-EY-MY-LASLF-ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKG 391 (467)
T ss_pred CCCchHHHHHHHHHHHHHHHHH--HhcC----c-HH-HH-HHHHH-HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 9988765433322222211111 1111 1 11 11 11111 1111111222222345669999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHH------------HcCCchhhHHHHHHHHHHHHHHHH
Q 010848 419 TVNWI-SNLIVAQTFLTVAE------------LVGTGATFLILAGIAVLAVVFVIL 461 (499)
Q Consensus 419 ~~~~l-~~~i~~~~~~~~~~------------~~~~~~~f~~~~~~~~~~~~~~~~ 461 (499)
..+++ +..+.+...+.+.+ ..+|...|.++.+..+++.+..++
T Consensus 392 ~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 392 TFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99887 65788888888887 456778888887777777555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=258.33 Aligned_cols=368 Identities=17% Similarity=0.149 Sum_probs=252.6
Q ss_pred HHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHH
Q 010848 35 TVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAG 114 (499)
Q Consensus 35 ~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 114 (499)
.+.+.++.+....+.......+|.+.+|+|. +....++..+.+.+++.++++++|+++||+||||++..+..++.++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 3344455555555555555567889999875 3345688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 010848 115 AIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWML 194 (499)
Q Consensus 115 ~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f 194 (499)
++.+++++|++.+++.|+++|++.+...+...+++.|++|+|+|+++++....+..+|..+++.++..+.+. .+||+.|
T Consensus 88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-~gw~~~f 166 (390)
T PRK03545 88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-LGWRTTF 166 (390)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887766543 3699999
Q ss_pred HhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhH
Q 010848 195 GVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIR 273 (499)
Q Consensus 195 ~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (499)
++.++..++..+. ...+||.|+. ++++ .....+.+++++++
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~---------------------------------~~~~~~~~~~~~~~ 208 (390)
T PRK03545 167 LAIGGGALITLLLLIKLLPLLPSE-----HSGS---------------------------------LKSLPLLFRRPALV 208 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC-----Ccch---------------------------------HHHHHHHHhCcHHH
Confidence 9988877665444 3446765420 0000 00122355666555
Q ss_pred HHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHH
Q 010848 274 LAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVI 352 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 352 (499)
......... ... ......+.|.+++ ..|.+....+..... ...+..++.++.+++.||++||..... .....
T Consensus 209 ~~~~~~~~~-~~~----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~-~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~ 281 (390)
T PRK03545 209 SLYLLTVVV-VTA----HFTAYSYIEPFVQQVAGLSENFATLLLLL-FGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLL 281 (390)
T ss_pred HHHHHHHHH-HHH----HHHHHHHHHHHHHHhcCCCccHHHHHHHH-HHHHHHHHHHHHHHHhhccchhHHHHH-HHHHH
Confidence 433322211 111 1111233444444 467777666655444 444578999999999999998865432 22222
Q ss_pred HHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 010848 353 ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF 432 (499)
Q Consensus 353 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~ 432 (499)
.+...+.. . ..+ . +.......++ .......++.......|..| +.|+++.|+.....+++..+++...
T Consensus 282 ~~~~~l~~--~-~~~------~-~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~ 349 (390)
T PRK03545 282 VCLLLLLP--A-ANS------E-WHLSVLSIFW-GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLG 349 (390)
T ss_pred HHHHHHHH--H-hch------H-HHHHHHHHHH-HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 1 100 1 1111111111 11122233334456667766 5789999999998899998999999
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHHHHhc
Q 010848 433 LTVAELVGTGATFLILAGIAVLAVVFVILFV 463 (499)
Q Consensus 433 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 463 (499)
+.+.+..|+...|++.+.+.+++.+..++..
T Consensus 350 G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 350 NQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999899998888888877766654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-30 Score=256.81 Aligned_cols=374 Identities=15% Similarity=0.150 Sum_probs=256.9
Q ss_pred HHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA 115 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 115 (499)
...+++.+..-.+ ..+++.+|.+++|++. +....+++.+.+.+++.+++++.|+++||+|||+++..+..++++++
T Consensus 13 ~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~ 88 (393)
T PRK09705 13 VLVLIGLNMRPLL-TSVGPLLPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGA 88 (393)
T ss_pred HHHHHHHHcchhh-hccchhHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3444455554444 5678899999999864 34446889999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 010848 116 IIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLG 195 (499)
Q Consensus 116 ~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~ 195 (499)
+.+++++|++.+++.|+++|++.|...+....++.|++| ++|+++++....+...|..+++.++..+.+...+||+.+.
T Consensus 89 ~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~ 167 (393)
T PRK09705 89 LMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA 167 (393)
T ss_pred HHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999997 7799999998888888888888877666554446999887
Q ss_pred hhhHHHHHHHHHHHhc-cCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHH
Q 010848 196 VSAVPAIIQFVLMLFM-PESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRL 274 (499)
Q Consensus 196 ~~~~~~~l~~~~~~~l-pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (499)
+.++..++.++.++.. ++.|+ .+ + ++ +...++.+++++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~-------~~----------------------------~--~~-~~~~~~~l~~~~~~~ 209 (393)
T PRK09705 168 WWALPAVVALFAWWWQSAREVA-------SS----------------------------H--KT-TTTPVRVVFTPRAWT 209 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-------cc----------------------------c--CC-CcCCcccccCHhHHH
Confidence 6665554443333222 11111 00 0 00 001123344454433
Q ss_pred HHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 010848 275 AFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS 354 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~ 354 (499)
..... +....+......+.|.++++.|.+..+.+..... ...+..++.++.+++.||++||+....+.....++
T Consensus 210 l~~~~-----~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~-~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 210 LGVYF-----GLINGGYASLIAWLPAFYIEIGASAQYSGSLLAL-MTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 22211 1111223344456777777788877666665544 44567999999999999999998877665444444
Q ss_pred HHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccC-cchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010848 355 LVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFL 433 (499)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~l~~~i~~~~~~ 433 (499)
..++.+. ..+ .. .... . +. ........+.......+.+ |++.|++..|+.+..+.++..+++....
T Consensus 284 ~~~~~~~---~~~-----~~-~~~~--~-l~-g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G 350 (393)
T PRK09705 284 FCGFIWL---PLQ-----LP-VLWA--M-VC-GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSG 350 (393)
T ss_pred HHHHHHc---cch-----HH-HHHH--H-HH-HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332211 110 00 1111 1 11 1111122333444445555 4678999999999999999989999999
Q ss_pred HHHHHcC-CchhhHHHHHHHHHHHHHHHHhcccCCCCCH
Q 010848 434 TVAELVG-TGATFLILAGIAVLAVVFVILFVPETQGLTF 471 (499)
Q Consensus 434 ~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l 471 (499)
.+.|+.| +...|++.++.+++..+....+.|||++|..
T Consensus 351 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 351 VLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 9888876 4566777777777777777788999977653
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-29 Score=261.97 Aligned_cols=420 Identities=19% Similarity=0.228 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH
Q 010848 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADV 109 (499)
Q Consensus 30 ~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~ 109 (499)
..+.....+.++.+.+++|...++..+|.+.++++.. ....++..+.+.+++.++.++.|+++||+|||+++..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLT---TVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4455666667788999999999999999999988653 3345778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCc
Q 010848 110 VFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT 189 (499)
Q Consensus 110 l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 189 (499)
+.++++++++++++++.+++.|++.|++.+...+....++.|++|+|+|++..+.......+|..+++.+...+.+. .+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~ 172 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV-WG 172 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887766553 36
Q ss_pred hHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhh--HHHHHHHHHH-HHHHHHhhhcccch---
Q 010848 190 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR--LEDEIDHLSA-AAEEELRKKKTVRY--- 263 (499)
Q Consensus 190 Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~--- 263 (499)
||+.|++..++.++.+.....+||++++..++++.++..+..+.....+. .......... .............+
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVA 252 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99999987666555555556678887654322221111111110000000 0000000000 00000000000000
Q ss_pred -------------hhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHH
Q 010848 264 -------------LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTI 329 (499)
Q Consensus 264 -------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 329 (499)
....+.++.+. ........+..+........+.|.+++ ..|++..+.+.+.... ..+..++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~-~~~~~~g~~ 329 (496)
T PRK03893 253 VLGLLCAAIFISFMVQSSGKRWPT--GVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFS-GFGAAVGCC 329 (496)
T ss_pred HHHHHHHHHHHHHHHHhcccchhH--HHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHHHHHH
Confidence 00000000010 001111111111111223456777774 7788877766665444 445788999
Q ss_pred HHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchh
Q 010848 330 VGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY 409 (499)
Q Consensus 330 ~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 409 (499)
++|++.||++||+.+..+.....+..+.+.. .. . ... + ......+.......+..+....+..|.+|++.
T Consensus 330 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~-~----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (496)
T PRK03893 330 VGGFLGDWLGTRKAYVCSLLISQLLIIPVFA---IG-G----ANV-W-VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ 399 (496)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---cc-c----cHH-H-HHHHHHHHHHHHhcccchhhHHHHHhhCCHHH
Confidence 9999999999998876554333322222111 01 0 011 1 11111111122233444555677889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH-HHHHHHHhcccC
Q 010848 410 RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL-AVVFVILFVPET 466 (499)
Q Consensus 410 r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~pet 466 (499)
|+++.|+.+....+++.+++...+.+.+..++...+...++.+.+ +.+...+..|+.
T Consensus 400 ~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (496)
T PRK03893 400 RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSR 457 (496)
T ss_pred hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 999999999999999989998888888888877666554443333 333334445544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-30 Score=251.26 Aligned_cols=353 Identities=13% Similarity=0.093 Sum_probs=232.2
Q ss_pred cchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 010848 51 VISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILG 130 (499)
Q Consensus 51 ~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~ 130 (499)
.+++.+|.+++|++.. ....+++.+.+.+|+.+++++.|+++||+|||+++..+......+.......+|+..+++.
T Consensus 9 ~~~~~lp~i~~~~~~s---~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVS---KEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHhhHHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3567788999998753 3446889999999999999999999999999998776655554544333344899999999
Q ss_pred HHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHH-HHH
Q 010848 131 RLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV-LML 209 (499)
Q Consensus 131 R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~-~~~ 209 (499)
|+++|+|.|. .+.....++|++|+|+|+++++....+..+|..+++.++..+.+. .+||+.|++.++++++..+ .++
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-GGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 456666779999999999999999999999999999888877654 4699999997776665444 456
Q ss_pred hccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhcc
Q 010848 210 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 289 (499)
Q Consensus 210 ~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (499)
++||+|++.. +..+ .+ +. ..++++++++|..+...+... ....
T Consensus 164 ~lp~~p~~~~---~~~~-------------~~-----------~~-----~~~~~~ll~~~~~~~~~~~~~-----~~~~ 206 (368)
T TIGR00903 164 ALPALPFQAA---EGFG-------------FK-----------DA-----VKEFGALAGRKDLWIIGAILG-----FGVA 206 (368)
T ss_pred HcCCCCCCCC---CCcc-------------hH-----------HH-----HHHHHHHHcChhHHHHHHHHH-----HHHH
Confidence 7899987521 1000 00 00 012446777777655433322 1222
Q ss_pred CcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCh---HHHHH-hhHHHHHHHHHHHHHHhhC
Q 010848 290 GINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK---KLALS-SLAGVIISLVLLSWAFISG 365 (499)
Q Consensus 290 ~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr---~~~~~-~~~~~~i~~~~~~~~~~~~ 365 (499)
..+....|.|.++++.|++.. .+....++ ...+.+..+++.||.+|| +.... ......+.. ..... .
T Consensus 207 ~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~----~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~--~~~~~--~ 277 (368)
T TIGR00903 207 LFDNLAIWLEAALRPAGLEDI-AGDAVALA----ILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFF--LALAF--E 277 (368)
T ss_pred HHHHHHHHHHHHHHHCCCChH-HHHHHHHH----HHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH--HHHHH--c
Confidence 334555788999988777643 33333232 233444557888887654 22221 111111111 11111 1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhh
Q 010848 366 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATF 445 (499)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f 445 (499)
.+ . ........ ...++.....+..+++.+|.+|++.|+++.|+.+..+++++.+++...+.+.. +....|
T Consensus 278 ~~----~---~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f 347 (368)
T TIGR00903 278 LN----R---LALFAFIG-IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYF 347 (368)
T ss_pred cc----c---HHHHHHHH-HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHH
Confidence 10 0 11111111 12223333445567889999999999999999999999999888877765552 555678
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 010848 446 LILAGIAVLAVVFVILFVPE 465 (499)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~pe 465 (499)
.+++...+++.+... ..|+
T Consensus 348 ~~~~~~~~i~~~~~~-~~~~ 366 (368)
T TIGR00903 348 TFLAILITIAFAIAL-LLPN 366 (368)
T ss_pred HHHHHHHHHHHHHHH-hCCC
Confidence 888877777766553 3344
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=253.71 Aligned_cols=389 Identities=20% Similarity=0.257 Sum_probs=259.6
Q ss_pred hhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC
Q 010848 43 LLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP 122 (499)
Q Consensus 43 ~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~ 122 (499)
+...+|...++...|++.++++. +....+++.+++.++..++.++.|+++||+|||+++..+.++..+++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 34456778888899999988865 334468899999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHH
Q 010848 123 DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAI 202 (499)
Q Consensus 123 s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 202 (499)
+++.+++.|+++|++.+...+....++.|++|+|+|++..+.......+|..+++.++..+.+.. +||+.|++.+++.+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 159 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLGI 159 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877655433 59999999887766
Q ss_pred HHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHH
Q 010848 203 IQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAG 281 (499)
Q Consensus 203 l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (499)
+..+.. ++.||+|+.... .++++.....+. ..+ +..+++.++++....++.+++|+.+...+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (399)
T TIGR00893 160 IWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGG------LLA------EQQGKGPSTPKKYQIKELLKDRRVWGLALGQFL 226 (399)
T ss_pred HHHHHhhheecCCCCcccc-CCHHHHhhcchh------hcc------ccccccccCCCccchHHHhcCHHHHHHHHHHHH
Confidence 655544 446766542111 111110000000 000 000001111122335566777765544333211
Q ss_pred HHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH-hhHHHHHHHHHHH
Q 010848 282 LQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS-SLAGVIISLVLLS 359 (499)
Q Consensus 282 ~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~i~~~~~~ 359 (499)
..........+.|.+++ ..+.+..+.+..... ......++.++++++.||++||+.... ......++.+...
T Consensus 227 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (399)
T TIGR00893 227 -----VNIGLGFFLTWFPTYLVQERGLSILEAGFMASL-PGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS 300 (399)
T ss_pred -----HHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 11222334445666664 457665555554433 444578899999999999999862111 1111111111111
Q ss_pred HHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010848 360 WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV 439 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~ 439 (499)
......... . ..+.... . .....+..+..+..+++..|.+|++.|+++.|+.+....+++.+++.+.+.+.+..
T Consensus 301 ~~~~~~~~~--~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 301 LLMFATNYV--N--IPYAALA-L-VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT 374 (399)
T ss_pred HHHHHhccc--h--hHHHHHH-H-HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence 111111100 0 1111111 1 11222333356777889999999999999999999999999999999888888877
Q ss_pred C-CchhhHHHHHHHHHHHHHHH
Q 010848 440 G-TGATFLILAGIAVLAVVFVI 460 (499)
Q Consensus 440 ~-~~~~f~~~~~~~~~~~~~~~ 460 (499)
+ +...|.+.++..+++.+..+
T Consensus 375 g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 375 GSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred CchhHHHHHHHHHHHHHHHHHH
Confidence 7 77777777777776655543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=253.33 Aligned_cols=392 Identities=15% Similarity=0.129 Sum_probs=244.8
Q ss_pred HHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH
Q 010848 33 GLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFT 112 (499)
Q Consensus 33 ~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~ 112 (499)
.+.....+.......|....+...|++.++ +. +....+++.+.+.+++.++++++|+++||+|||+++.++.++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 29 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 333444455566666666667778888765 43 34456889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC----chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHH-HHHHHhhhhccCCC
Q 010848 113 AGAIIMAAAP----DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQ-FLSYLVNLAFTEVP 187 (499)
Q Consensus 113 ~~~~~~~~a~----s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~l~~~~~~~~~~~~ 187 (499)
++++++++++ ++..+++.|+++|++.|...+.....+.|++|+|+|++.++....+..+|. +.+++.+..... .
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~ 183 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-F 183 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-h
Confidence 9999888764 678889999999999999888888899999999999999998888777775 445554322222 2
Q ss_pred CchHHHHHhhhHHHHHH-HHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccc--hh
Q 010848 188 GTWRWMLGVSAVPAIIQ-FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR--YL 264 (499)
Q Consensus 188 ~~Wr~~f~~~~~~~~l~-~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 264 (499)
.+||+.|++.+++.++. ++..+++||+|+....+.+ ++... +.+++ ..+++.++++... ..
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~------~~~~~~~~~~~~~~~~~ 247 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKN---------DYPDD------YNEKHEQELTAKQIFMQ 247 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhh---------ccccc------cccccCCCccHHHHHHH
Confidence 37999999988766664 4445677988864221111 11000 00000 0000000000000 11
Q ss_pred hhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCh
Q 010848 265 DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRK 341 (499)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr 341 (499)
.+++++.++...+...... ...+....+.|.++++ .|++....+.... ....+..++.++.|+++||+ +||
T Consensus 248 ~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~-~~~~~~~~g~~~~G~l~dr~~~~r~ 321 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSWAYF-LYEYAGIPGTLLCGWMSDKVFRGNR 321 (452)
T ss_pred HHHcChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCCc
Confidence 2456666555433322211 1122344577888765 5777666555443 44455678999999999999 444
Q ss_pred HHHHHh-hHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHH
Q 010848 342 KLALSS-LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV 420 (499)
Q Consensus 342 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 420 (499)
...... .....++...+. .. ... .. +........ ......+.......+..|.+|++.|+++.|+.+..
T Consensus 322 ~~~~~~~~~l~~~~~~~~~--~~-~~~---~~---~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 391 (452)
T PRK11273 322 GATGVFFMTLVTIATIVYW--LN-PAG---NP---TVDMACMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 391 (452)
T ss_pred chHHHHHHHHHHHHHHHHH--Hh-ccc---Ch---HHHHHHHHH-HHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence 432211 111111111111 11 110 00 111111111 11111111122234567999999999999999988
Q ss_pred HHHHHHH-HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHH
Q 010848 421 NWISNLI-VAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 461 (499)
Q Consensus 421 ~~l~~~i-~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 461 (499)
.++++.+ ++...+.+.++.|+...|.++++.++++.+....
T Consensus 392 ~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 392 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8887665 5778888889889988898888888777665543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=255.96 Aligned_cols=386 Identities=17% Similarity=0.201 Sum_probs=256.2
Q ss_pred HHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH
Q 010848 34 LTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTA 113 (499)
Q Consensus 34 ~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~ 113 (499)
+.+.++++.++..+|.++++..+|.+.+|++... ...+++.+.+.++..++.++.|+++||+|||+++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSL---SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh---hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3456667889999999999999999999987532 3357789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 010848 114 GAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWM 193 (499)
Q Consensus 114 ~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~ 193 (499)
+++++++++|++.+++.|+++|++.|...+....++.|++|+|+|++..+.+.....+|..+++.++..+.+. .+||+.
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~~ 158 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-YHWRWI 158 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-cCceeh
Confidence 9999999999999999999999999999999999999999999999999999999999999999888777654 369999
Q ss_pred HHhhhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHH------HH-h-hChh-h--HHHHHHH--------HHHHHHH
Q 010848 194 LGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVL------SK-I-YDIA-R--LEDEIDH--------LSAAAEE 253 (499)
Q Consensus 194 f~~~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~------~~-~-~~~~-~--~~~~~~~--------~~~~~~~ 253 (499)
|++.++++++..++. +.+||+++....+.|........ .. . .+.. + .+.+... ......+
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (485)
T TIGR00711 159 FLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVW 238 (485)
T ss_pred hhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999887776655543 45676543211111111110000 00 0 0000 0 0000000 0000111
Q ss_pred HHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 010848 254 ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGI 332 (499)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g 332 (499)
+.+++++....+++++|+++...+...... ...+...++.|.+++. .|.++.+.+... .+...+..++.+++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 239 ELTDDNPLVDLRLFKYRNFTIGCVYMSLLG-----LGLYGSFYLLPLYLQQVLGYTALQAGLHI-LPVGLAPMLSSPIAG 312 (485)
T ss_pred HHcCCCCccCHHHHcCCChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 222222333446788877665543322211 1222334567777764 677766655544 445556788999999
Q ss_pred HHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhh
Q 010848 333 YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGI 412 (499)
Q Consensus 333 ~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 412 (499)
++.||++||+....+.....++...+.+.. ..+. . . +.......+.....+. ..+.......+..|++.|++
T Consensus 313 ~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~--~--~-~~~~~~~~l~g~g~~~-~~~~~~~~~~~~~~~~~~g~ 384 (485)
T TIGR00711 313 RMGDKIDPRKLVTIGLILYAVGFYWRAFTF--TPDT--P--F-LAIALPQFIRGFGMGC-FFMPLTTIALSGLPPHKIAR 384 (485)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHhccC--CCCC--C--H-HHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHhH
Confidence 999999999987766655544444332111 1111 1 1 1111111111111111 11122234457789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 413 CGGMSATVNWISNLIVAQTFLTVAE 437 (499)
Q Consensus 413 ~~g~~~~~~~l~~~i~~~~~~~~~~ 437 (499)
+.|+.+....+++.+++.....+.+
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888777766554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=246.38 Aligned_cols=362 Identities=17% Similarity=0.140 Sum_probs=242.9
Q ss_pred HhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh
Q 010848 41 GGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA 120 (499)
Q Consensus 41 ~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~ 120 (499)
..+..+.. ...+...|++.+|++. +....+++.+++.+++.++++++|+++||+|||+++.++.++..++++.+++
T Consensus 12 ~~~~~~~~-~~~~~~~~~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~ 87 (377)
T TIGR00890 12 MCFTSGYV-YTWTLLAPPLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87 (377)
T ss_pred HHHHhhHH-hhhhhHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH
Confidence 34444443 3466778999999865 4455688999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHH
Q 010848 121 APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVP 200 (499)
Q Consensus 121 a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~ 200 (499)
++|++.+++.|+++|++.|...+....++.|++| |+|+++.+....+...|..+++.+.....+. .+||+.|++.+++
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~f~~~~~~ 165 (377)
T TIGR00890 88 ADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-EGVPAAFIYMGII 165 (377)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-ccHHHHHHHHHHH
Confidence 9999999999999999999988888889999997 5699999998888888876644333333322 3699999998887
Q ss_pred HHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHH
Q 010848 201 AIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAG 279 (499)
Q Consensus 201 ~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (499)
.++..+.. ++++|+|+.. .+++.+. +++....++.+++++.+......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 214 (377)
T TIGR00890 166 FLLVIVLGAFLIGYPPGQL-IKTNIEV------------------------------SVKDYTVWEMLRTPQFWVLYLSF 214 (377)
T ss_pred HHHHHHHHHHheecCchhc-cccCccc------------------------------chhhhhHHHHHcCccHHHHHHHH
Confidence 77665554 3455543210 0000000 00001123445555544332221
Q ss_pred HHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 010848 280 AGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS 359 (499)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~ 359 (499)
. ...+ .......+.+.+.++.+.+....+..... ......++.++.+++.||++||+.+..+.....++..++.
T Consensus 215 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 288 (377)
T TIGR00890 215 F-LNAV----SGLLLIGLYKPYGQSLGLSDGFLVLAVSI-SSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML 288 (377)
T ss_pred H-HHhH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 1 1111 11112223445566777765555544433 4445788999999999999999987766555554443332
Q ss_pred HHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010848 360 WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV 439 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~ 439 (499)
.. . +. ..+.......+ .........+....+..|.+|++.|+++.|+.+....+++.+++...+.+.+..
T Consensus 289 ~~---~-~~-----~~~~~~~~~~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 289 FI---P-ML-----NDVLFLATVAL-VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred Hc---c-cc-----hhHHHHHHHHH-HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 21 1 10 01111111111 112222233444567889999999999999999999999999999888888888
Q ss_pred CCchhhHHHHHHHHHH
Q 010848 440 GTGATFLILAGIAVLA 455 (499)
Q Consensus 440 ~~~~~f~~~~~~~~~~ 455 (499)
|+...|.+.+++.+++
T Consensus 359 g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 359 GFEYTFIVTGAFALTS 374 (377)
T ss_pred chhhHHHHHHHHHHHh
Confidence 8888888777766654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=249.27 Aligned_cols=379 Identities=19% Similarity=0.194 Sum_probs=262.4
Q ss_pred hhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh---
Q 010848 44 LFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA--- 120 (499)
Q Consensus 44 ~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~--- 120 (499)
...+...+....+|...++++. +....+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~ 104 (417)
T PRK10489 28 ISIFGLGLLGVAVPVQIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF 104 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence 3344445666777877777653 4456789999999999999999999999999999999888887776655432
Q ss_pred --cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhh
Q 010848 121 --APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 198 (499)
Q Consensus 121 --a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~ 198 (499)
.++++.+++.|+++|++.+...+....++.|+.|+++|++..+.......+|..+++.++..+... .+|||.|++.+
T Consensus 105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-~~~~~~~~~~~ 183 (417)
T PRK10489 105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-GGVAWNYGLAA 183 (417)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-HhhHHHHHHHH
Confidence 567889999999999999988888899999999999999999998888889999999887766543 25999999888
Q ss_pred HHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHH
Q 010848 199 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLA 278 (499)
Q Consensus 199 ~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (499)
+..++..+..+.+||+++.. .++++. . ++. ...++..+++|.++...+.
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~---~~~~~~----------------~--------~~~----~~~~~~~~~~~~~~~~~~~ 232 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPP---QPREHP----------------L--------RSL----LAGFRFLLASPVVGGIALL 232 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCC---cccccc----------------h--------HHH----HHHHHHHHcChHHHHHHHH
Confidence 77766666666778765321 000000 0 000 0012234555555444333
Q ss_pred HHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHH
Q 010848 279 GAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVL 357 (499)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~ 357 (499)
.... .. ......+.|.+.++ .|.++...+.+.... ..+..++.++.+++.||.++++.+..+..+..+..+.
T Consensus 233 ~~~~-~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~-~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 305 (417)
T PRK10489 233 GGLL-TM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAV-PLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGL 305 (417)
T ss_pred HHHH-HH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHH-HHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHH
Confidence 2211 11 11223456777776 787766666655443 4457889999999999977776665555444444333
Q ss_pred HHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 358 LSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 437 (499)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~ 437 (499)
+.. .+ . . +.......++ .+......+..+++..|..|++.|+++.|+....+.++..+++...+.+.+
T Consensus 306 ~~~----~~-----~-~-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 306 FGL----MP-----M-W-ILAVLCLALF-GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHc----cc-----h-H-HHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 221 11 0 1 1111111111 111111224445778899999999999999999999999999999999999
Q ss_pred HcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCHHHHHH
Q 010848 438 LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQ 476 (499)
Q Consensus 438 ~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~~~~~ 476 (499)
..++...+...++..++..++.+...||+|++++||+++
T Consensus 374 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 374 MMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 888877888888877777777778889999999888775
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=247.99 Aligned_cols=403 Identities=15% Similarity=0.103 Sum_probs=252.9
Q ss_pred HHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHH
Q 010848 35 TVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAG 114 (499)
Q Consensus 35 ~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 114 (499)
.....++......+........|++++ +|. +....+++.+++.++..+++++.|+++||+|||+.+..+.++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGF---SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHHH-cCC---CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 344445556666676667777888775 343 3344688999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCch
Q 010848 115 AIIMAAA----PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTW 190 (499)
Q Consensus 115 ~~~~~~a----~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~W 190 (499)
+++.++. +++..+.+.|++.|++.|...+....++.|++|+++||+.++.......+|..+++.+.........+|
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 8887764 467788899999999999999989999999999999999999988888888877765543322222469
Q ss_pred HHHHHhhhHHHHHHH-HHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcc
Q 010848 191 RWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKS 269 (499)
Q Consensus 191 r~~f~~~~~~~~l~~-~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (499)
|+.|++.+++.++.. +..+++||+|+....+..++...+ . ..+.. ++.+++.+.+ ......++++
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-------~~~~~~~~~~-~~~~~~~~~~ 250 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRND---Y---PDDYN-------EKAEQELTAK-EIFMQYVLPN 250 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccc---c---ccccc-------cccccccchH-HHHHHHHccC
Confidence 999999887776644 445567888764211110000000 0 00000 0000000000 0001234566
Q ss_pred hhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhh
Q 010848 270 KEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 348 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 348 (499)
+..+...+..... ....+....+.|.++++ .|.++...+... .+....+.++.+++|++.||+++++....+.
T Consensus 251 ~~~~~~~~~~~~~-----~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~-~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~ 324 (438)
T TIGR00712 251 KLLWYIAIANVFV-----YLLRYGVLDWSPTYLKEVKHFALDKSSWAY-FLYEYAGIPGTLLCGWMSDKVFKGNRGATGV 324 (438)
T ss_pred chHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHhccCcccHHHH
Confidence 6555443322111 11223344577888775 577766555444 4444557899999999999996543222222
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHH-HH
Q 010848 349 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN-LI 427 (499)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~-~i 427 (499)
............ ........ . +.....+. ...+...+..........|.+|++.|+++.|+.+..+++++ .+
T Consensus 325 ~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~ 397 (438)
T TIGR00712 325 FFMTLVTIAVIV-YWMNPAGN--P---LVDMICMI-VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 397 (438)
T ss_pred HHHHHHHHHHHH-HHhcCCCc--h---HHHHHHHH-HHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhh
Confidence 111111111111 11111110 1 11111111 11111112112222456799999999999999998888765 56
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 428 VAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
++...+.+.++.|+...|++.++..+++.+...+..||.|+
T Consensus 398 gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 398 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred cchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 78888888888888889988888888888888888888764
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=243.90 Aligned_cols=385 Identities=16% Similarity=0.218 Sum_probs=250.1
Q ss_pred HHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA 115 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 115 (499)
...+++.+...+|.+.++..+|.+.+|++.. ....+++.+.+.++..++.+++|+++||+|||+++..+..++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 13 WIVAFGFFMQSLDTTIVNTALPSMAQSLGES---PLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999888653 3334678899999999999999999999999999999999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 010848 116 IIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLG 195 (499)
Q Consensus 116 ~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~ 195 (499)
++++++++++.+++.|+++|++.|...+....++.|++|+++|+...+.......+|..+++.+++.+.+.. +||+.|+
T Consensus 90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~f~ 168 (471)
T PRK10504 90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIFL 168 (471)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHHHH
Confidence 999999999999999999999999999999999999999999999999988888899999998887776543 6999999
Q ss_pred hhhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHH-HH---HHh---hChhh---HHHHHH--------HHHHHHHHHHh
Q 010848 196 VSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAIL-VL---SKI---YDIAR---LEDEID--------HLSAAAEEELR 256 (499)
Q Consensus 196 ~~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~-~~---~~~---~~~~~---~~~~~~--------~~~~~~~~~~~ 256 (499)
+..+...+..+.. ...|+++.- ..+.|...... .. ... .+... ...... .......++.+
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (471)
T PRK10504 169 INIPVGIIGAIATLMLMPNYTMQ-TRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN 247 (471)
T ss_pred HHHHHHHHHHHHHHHhCCCcccc-CCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9887666555444 344554321 01111111000 00 000 00000 000000 00000111112
Q ss_pred hhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 010848 257 KKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLI 335 (499)
Q Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 335 (499)
.+++....+++++|++...+...+.. ..+.....++.|++++. .|.++...+... .+...+..++..+.+++.
T Consensus 248 ~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~~~~~~~~~~~~~~l~ 321 (471)
T PRK10504 248 NNRALFSLKLFRTRTFSLGLAGSFAG-----RIGSGMLPFMTPVFLQIGLGFSPFHAGLMM-IPMVLGSMGMKRIVVQVV 321 (471)
T ss_pred CCCCccCHHHhcccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 22222234578888776544332211 11223344567888874 677665555443 444455667778899999
Q ss_pred hccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHH
Q 010848 336 DHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGG 415 (499)
Q Consensus 336 dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 415 (499)
||+|||+.+..+.....+...++... ... . .. +.......+...... ...+....+..+.+|++.|+.+.+
T Consensus 322 ~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~-~---~~-~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~ 392 (471)
T PRK10504 322 NRFGYRRVLVATTLGLALVSLLFMLV---ALL-G---WY-YLLPFVLFLQGMVNS-TRFSSMNTLTLKDLPDNLASSGNS 392 (471)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHhc---ccc-c---cH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHhccchHH
Confidence 99999998876665555444333221 111 0 11 111111111111111 112334466678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 010848 416 MSATVNWISNLIVAQTFLTVAELVG 440 (499)
Q Consensus 416 ~~~~~~~l~~~i~~~~~~~~~~~~~ 440 (499)
+.+....++..+++.+...+.+..+
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998988888777766655443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-28 Score=240.69 Aligned_cols=377 Identities=14% Similarity=0.149 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH
Q 010848 31 VLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVV 110 (499)
Q Consensus 31 ~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l 110 (499)
++++...+.++.+..+.+....+..+|.+.++++. +....+++.+.+.+++.++++++|++.||+|||+++..+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~---s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNL---PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556666778899999999999999999999865 333457789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCch
Q 010848 111 FTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTW 190 (499)
Q Consensus 111 ~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~W 190 (499)
..+++++++++++++.+++.|+++|++.|...+....++.|++|+++|+...+........|..+++.+...+.....+|
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw 161 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW 161 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 99999999999999999999999999999999999999999999999999888777777777777776655443323479
Q ss_pred HHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcch
Q 010848 191 RWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK 270 (499)
Q Consensus 191 r~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (499)
|+.|++.+++.++..++.++ .+.|+. .+++.+ +.++. .++.+ ++
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~~------------------------------~~~~~--~~~~~-~~ 205 (394)
T PRK03699 162 YWVYACIGLVYVAIFILTLF-SEFPAL--GKHAPK------------------------------ADKPV--AKEKW-GI 205 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCccc--cccCcc------------------------------ccCcc--ccccC-Ch
Confidence 99999887766655444332 222220 000000 00000 00011 12
Q ss_pred hhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhH
Q 010848 271 EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLA 349 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 349 (499)
..+...+.. +......+....+.|.+++ ..|++..+.+.+.+... .+..++.++++++.||++||+.+.....
T Consensus 206 ~~~~~~~~~-----~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~-~~~~ig~~~~g~l~dr~~~~~~l~~~~~ 279 (394)
T PRK03699 206 GVLFLAIAA-----LLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFW-MAYMVGMWIFSFIVRFFDLQRILTVLAG 279 (394)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence 222111111 1111122334467788875 56887766666555444 4578999999999999999988765443
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHH
Q 010848 350 GVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVA 429 (499)
Q Consensus 350 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~ 429 (499)
...+...++. . ..+ . .+.... .+...+...+..+...++..|..|.+ ++...+.......++..+++
T Consensus 280 ~~~~~~~~~~--~--~~~----~--~~~~~~--~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p 346 (394)
T PRK03699 280 LALVLMYLFV--N--TDD----P--SHLLYA--ILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTF 346 (394)
T ss_pred HHHHHHHHHH--H--cCC----c--hHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHH
Confidence 3333222211 1 111 0 011111 11111222223344444556666543 56677788888889999999
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccC
Q 010848 430 QTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPET 466 (499)
Q Consensus 430 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet 466 (499)
.+.+.+.+..|+...+++.+++..++.+. +.+.+++
T Consensus 347 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 382 (394)
T PRK03699 347 VVTSPIVAHFGLQAALLTANGLYAVVFVM-CILLGFV 382 (394)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHH-HHHHHHH
Confidence 99998888888888888777777666544 3444444
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=241.23 Aligned_cols=379 Identities=22% Similarity=0.260 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH
Q 010848 31 VLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVV 110 (499)
Q Consensus 31 ~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l 110 (499)
.+.....+.+..+..+++....+...|.+.++++. +....+++.+.+.++..++.++.|+++||+|||+.+..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGL---DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCC---CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34445555567788888888888889999888764 334457888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCch
Q 010848 111 FTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTW 190 (499)
Q Consensus 111 ~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~W 190 (499)
..++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++..+.......+|..+++.++..+.+.. +|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~ 170 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GW 170 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876665533 59
Q ss_pred HHHHHhhhHHHHH-HHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccc-hhhhhc
Q 010848 191 RWMLGVSAVPAII-QFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR-YLDVFK 268 (499)
Q Consensus 191 r~~f~~~~~~~~l-~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 268 (499)
|+.|++.++..++ ..+...++||+|++..++ +.++..+..++.......+++ ... .+++.+.+.... ...+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 245 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SAL---PEQKATQGTKRSVFKALFQ 245 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-ccc---cccccccchhhHHHHHHhc
Confidence 9999988644444 444456789998776554 233322222211110000000 000 000000000011 112233
Q ss_pred chhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhh
Q 010848 269 SKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 348 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 348 (499)
++..+....... . .+...........+.|++.+..+.+....+..... ...+..++.++.+++.||++||+......
T Consensus 246 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (398)
T TIGR00895 246 GKTARITVLLWL-L-YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGAL-FNFGGVIGSIIFGWLADRLGPRVTALLLL 322 (398)
T ss_pred chhHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 222222211111 1 11112223344456777777888877666555444 44457899999999999999985443322
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHH
Q 010848 349 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 428 (499)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~ 428 (499)
. ..+...++.. . ..+ . +....... ...+......+..+++..|.+|++.|+++.|+......++..++
T Consensus 323 ~-~~~~~~~~~~--~-~~~----~---~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g 390 (398)
T TIGR00895 323 L-GAVFAVLVGS--T-LFS----P---TLLLLLGA-IAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIG 390 (398)
T ss_pred H-HHHHHHHHHH--H-hhC----H---HHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222111 0 110 0 11111111 11222223345567888999999999999999999998888877
Q ss_pred HHHHH
Q 010848 429 AQTFL 433 (499)
Q Consensus 429 ~~~~~ 433 (499)
+...+
T Consensus 391 ~~~~G 395 (398)
T TIGR00895 391 PILAG 395 (398)
T ss_pred HHhHH
Confidence 66554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=233.63 Aligned_cols=365 Identities=15% Similarity=0.124 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH
Q 010848 31 VLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVV 110 (499)
Q Consensus 31 ~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l 110 (499)
.++..+.++.+.+....+.......+|.+.+|++. +....++..+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 44555555555555555555555567788888864 334457888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCch
Q 010848 111 FTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTW 190 (499)
Q Consensus 111 ~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~W 190 (499)
.++++++++++++++.+++.|+++|++.|...+....++.|++|+|+|++..+.......+|..+++.++..+.+.. +|
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw 173 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GW 173 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776543 69
Q ss_pred HHHHHhhhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcc
Q 010848 191 RWMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKS 269 (499)
Q Consensus 191 r~~f~~~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (499)
|+.|++.++.+++..+.. ...||+|+. +++ ...+.++.+++
T Consensus 174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~------~~~--------------------------------~~~~~~~~l~~ 215 (394)
T PRK10213 174 RNVFNAAAVMGVLCIFWIIKSLPSLPGE------PSH--------------------------------QKQNTFRLLQR 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCcc------ccc--------------------------------chhHHHHHhcC
Confidence 999999887666544443 346775421 000 00012245566
Q ss_pred hhhHHHHHHHHHHHHHHhccCccee-hhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhh
Q 010848 270 KEIRLAFLAGAGLQAFQQFTGINTV-MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 348 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 348 (499)
|.++......... .. +.... .+..|.+.++.|++....+...... ..+..++.++.+++.||.+++.... ..
T Consensus 216 ~~~~~~~~~~~~~-~~----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~-~~~~iig~~~~~~l~~r~~~~~l~~-~~ 288 (394)
T PRK10213 216 PGVMAGMIAIFMS-FA----GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSF-GIASFVGTSLSSFILKRSVKLALAG-AP 288 (394)
T ss_pred HHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHhcCCChhHHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHH-HH
Confidence 6655433321111 11 11122 2335777777888876656554443 3457888899999999964443333 22
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHH
Q 010848 349 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 428 (499)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~ 428 (499)
.........+.. . ..+ .+.......+....+ ....+...++..+..|+ .+++..+.......++..++
T Consensus 289 ~~~~~~~~~l~~-~--~~~-------~~~~~~~~~l~G~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G 356 (394)
T PRK10213 289 LVLAVSALVLTL-W--GSD-------KIVATGVAIIWGLTF-ALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCG 356 (394)
T ss_pred HHHHHHHHHHHH-H--hhh-------HHHHHHHHHHHHHHH-HhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHH
Confidence 222222111111 1 000 111111111111111 12223333455666774 45566666667777888888
Q ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 010848 429 AQTFLTVAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
+.+.+.+.+..|+...+...+++.++..
T Consensus 357 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 357 AAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 8888888888777666666555554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=236.11 Aligned_cols=368 Identities=17% Similarity=0.191 Sum_probs=242.4
Q ss_pred HHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 010848 37 IAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAI 116 (499)
Q Consensus 37 ~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~ 116 (499)
..+++.+..++....+++.+|.+++|++.. ....++..+.+.+++.++++++|+++||+|||+++..+..+++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s---~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHDVGIS---IPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHHcCCC---HHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 344577778888888888999999998653 33457899999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHh
Q 010848 117 IMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGV 196 (499)
Q Consensus 117 ~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~ 196 (499)
++++++|++.+++.|+++|++.|...+....++.|++|+++|++.++....+..+|..+++.++..+.+. .+||+.|++
T Consensus 84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gwr~~f~~ 162 (382)
T PRK10091 84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-FSWRYTFLL 162 (382)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-ccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888889998888877666543 369999999
Q ss_pred hhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHH
Q 010848 197 SAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLA 275 (499)
Q Consensus 197 ~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (499)
.++..++..+. ..++||.++ +.+.+. ++ ..+.++++..+..
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~~----~~~~~~-------------------------~~---------~~~~~~~~~~~~~ 204 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIRD----EAKGGL-------------------------RE---------QFHFLRSPAPWLI 204 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCCc----ccccCH-------------------------HH---------HHHHhcChHHHHH
Confidence 88766655443 445787642 000000 00 0012233333322
Q ss_pred HHHHHHHHHHHhccCcce-ehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 010848 276 FLAGAGLQAFQQFTGINT-VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS 354 (499)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~ 354 (499)
..... +. ..+... ..+..|++.+..|.++...+...... ..+..++.++.+++.||+++|+.+..+.....++
T Consensus 205 ~~~~~----~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~-~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~ 278 (382)
T PRK10091 205 FAATM----FG-NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLV-GLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLA 278 (382)
T ss_pred HHHHH----HH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHhHHHheeccccCchhHHHHHHHHHHHH
Confidence 11111 11 011111 12234444455788776666555444 4457899999999999999998877665554444
Q ss_pred HHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010848 355 LVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT 434 (499)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~ 434 (499)
.+++... .+. . +.......+..........+.......+..|++.++.+ .......+++.+++...+.
T Consensus 279 ~~~~~~~---~~~------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~ 346 (382)
T PRK10091 279 LLMLFFF---GGM------K-TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGM 346 (382)
T ss_pred HHHHHHH---Hhh------H-HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHH
Confidence 4332211 100 0 11111111111111111112222233455555555544 3456677888888888888
Q ss_pred HHHH-cCCchhhHHHHHHHHHHHHHHHHhcc
Q 010848 435 VAEL-VGTGATFLILAGIAVLAVVFVILFVP 464 (499)
Q Consensus 435 ~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~p 464 (499)
+.+. .++...+.+.++++.+.......+.|
T Consensus 347 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 347 MLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 8875 56777777776666666554444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=243.97 Aligned_cols=372 Identities=13% Similarity=0.109 Sum_probs=222.3
Q ss_pred HHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q 010848 40 IGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA 119 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~ 119 (499)
+..+...++...+.+..|.+.+|++... ...+++.+.+.+++.+++++.|+++||+|||+++..+.+++.++.++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~---~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~ 119 (476)
T PLN00028 43 ISFFTCFVSTFAAAPLLPIIRDNLNLTK---SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMS 119 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 3444555555566777888999887532 3346778899999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhc----cCC----CCchH
Q 010848 120 AAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAF----TEV----PGTWR 191 (499)
Q Consensus 120 ~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~----~~~----~~~Wr 191 (499)
+++++..+++.|+++|++.+... ....+++|++|+++||.+.+.......+|..+++.+...+ ... ..+||
T Consensus 120 ~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr 198 (476)
T PLN00028 120 LVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR 198 (476)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Confidence 99999999999999999988654 4566899999999999999887655555555554333221 111 13699
Q ss_pred HHHHhhhHHHHHHHHHHHhcc-CChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcch
Q 010848 192 WMLGVSAVPAIIQFVLMLFMP-ESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK 270 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~~~lp-esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (499)
+.|++.+++.++..+..++++ +.|+ ++.++..+ +.+.+ +.+....+++.++++
T Consensus 199 ~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~ 252 (476)
T PLN00028 199 IAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK--------------------SGTMP-KDSFSKVLRYGVTNY 252 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh--------------------cCccc-cccHHHHHHHHHcCc
Confidence 999998887776665555544 3332 11000000 00000 000001233445555
Q ss_pred hhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChH-----HH
Q 010848 271 EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK-----LA 344 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-----~~ 344 (499)
+.+...+... .. .........+.|.++. ..|++....+.+..+ ..++..++.+++|+++||++||+ ..
T Consensus 253 ~~~~~~~~~~-~~----~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~-~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~ 326 (476)
T PLN00028 253 RTWILALTYG-YS----FGVELTMDNIIAEYFYDRFGLSLETAGAIAAS-FGLMNLFARPAGGYLSDVAARRFGMRGRLW 326 (476)
T ss_pred hhHHHHHHHH-HH----HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHhcCcchhHH
Confidence 5443322211 11 1111122345566654 568876665555444 44557899999999999998762 11
Q ss_pred HHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHH
Q 010848 345 LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 424 (499)
Q Consensus 345 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~ 424 (499)
.. .....+..+.... .. ... . . +.....+.++..+.. ...+..+++..+.. ++.|+...|+.+..+.++
T Consensus 327 ~~-~~~~~l~~i~~~~-~~-~~~---~--~-~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg 395 (476)
T PLN00028 327 AL-WIVQTLGGVFCIW-LG-RAN---S--L-GAAIVVMILFSIFVQ-AACGATFGIVPFVS-RRSLGVISGLTGAGGNVG 395 (476)
T ss_pred HH-HHHHHHHHHHHHH-hc-ccc---h--H-HHHHHHHHHHHHHHH-HhhhhhcccCcccC-hhhchhhhhhhhccccHH
Confidence 11 1111111111111 10 000 0 1 111111111111111 12233455666654 468999999988888788
Q ss_pred HHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHH
Q 010848 425 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 459 (499)
+++.+.... ..+..++...|++.+++.+++.+..
T Consensus 396 ~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 396 AVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence 777765543 1122346678888887777775554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=237.71 Aligned_cols=362 Identities=20% Similarity=0.193 Sum_probs=229.0
Q ss_pred hhhhhhchhcchhhHHhhhhhhcc-ccccchhHHHH-----HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q 010848 42 GLLFGYDTGVISGALLYIKDDFEA-VNQSSFLQETI-----VSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA 115 (499)
Q Consensus 42 ~~~~g~~~~~i~~~~~~i~~~~~~-~~~~~~~~~~~-----~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 115 (499)
.+.+.+|...++...+++.+++.. .+++. .+.. .+...++..+++++.|+++||+||||++..+.++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 79 (394)
T TIGR00883 2 NAVEWFDFYLYGFAAVLVFHTFFPPSGDPL--VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGT 79 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 356778888888888887776543 21221 2222 233445556799999999999999999999999999999
Q ss_pred HHHHhcCchh--------HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC--
Q 010848 116 IIMAAAPDPY--------VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE-- 185 (499)
Q Consensus 116 ~~~~~a~s~~--------~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~-- 185 (499)
+++++++++. .+++.|+++|++.+...+....++.|++|+|+|++..+....+..+|..+++.++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~ 159 (394)
T TIGR00883 80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL 159 (394)
T ss_pred HHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999975 488999999999999999999999999999999999999988888888888876544321
Q ss_pred -----CCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcc
Q 010848 186 -----VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKT 260 (499)
Q Consensus 186 -----~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (499)
...+||+.|++.++..++.......+||+|++..+++ .+++..
T Consensus 160 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~ 207 (394)
T TIGR00883 160 GDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------------------KHKKKR 207 (394)
T ss_pred CHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------------------cccccc
Confidence 1236999999888776666555566788765321100 000111
Q ss_pred cchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010848 261 VRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG 339 (499)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 339 (499)
.+.++.+++++....... .. .+...........+.|.+. +..|.+....+..... ......++.++.+++.||+|
T Consensus 208 ~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g 283 (394)
T TIGR00883 208 GPIRETLTKHRKPFLLGL--GL-VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLML-SLILFFITIPLSGALSDRIG 283 (394)
T ss_pred CCHHHHHHhchHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 223344444331111111 11 1111112233345667776 4567776665554433 34457888999999999999
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHH
Q 010848 340 RKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419 (499)
Q Consensus 340 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 419 (499)
||+.+........+.......... ... .. +.......+. .+......+..+++.+|.+|++.|+++.++...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~---~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 355 (394)
T TIGR00883 284 RRPVLIIFTVLAALLAVPLLMALL-DSG---SF---TLFFFLVLGL-ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYN 355 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cCC---ch---HHHHHHHHHH-HHHHHHHhhhHHHHHHHhCCccceeeEeeehhH
Confidence 998765433322222211111111 111 01 1111111111 111222334556788999999999998887554
Q ss_pred H-HHHHHHHHHHHHHHHHHHcC-CchhhHHHH
Q 010848 420 V-NWISNLIVAQTFLTVAELVG-TGATFLILA 449 (499)
Q Consensus 420 ~-~~l~~~i~~~~~~~~~~~~~-~~~~f~~~~ 449 (499)
. +.++..+++.+.+.+.+..+ +...++..+
T Consensus 356 ~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 356 LAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred hHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 4 45667678888888888777 544444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=248.30 Aligned_cols=396 Identities=18% Similarity=0.186 Sum_probs=251.9
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhhhhc-------------------cccccchhHHHHHHHHHHHHHHHHHhhh
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFE-------------------AVNQSSFLQETIVSMALVGAIVGAASGG 92 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~-------------------~~~~~~~~~~~~~s~~~lg~~ig~~~~g 92 (499)
+.+.....++....-.|...++.+.+.+.++-+ ..+.+....+++.+.+.+++.+++++.|
T Consensus 18 ~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g 97 (465)
T TIGR00894 18 LFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVG 97 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchH
Confidence 344444455555667787777777766654110 1233555678899999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHH
Q 010848 93 WINDAYGRKKATLLADVVFTAGAIIMAA--APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMIT 170 (499)
Q Consensus 93 ~l~Dr~Grr~~l~~~~~l~~~~~~~~~~--a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~ 170 (499)
+++||+|||+++..+.++++++++++.+ .+++..+++.|+++|++.|...+....+++|++|+++|+++.+....+..
T Consensus 98 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 177 (465)
T TIGR00894 98 YLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ 177 (465)
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888754 46688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH-hccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHH
Q 010848 171 SGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 249 (499)
Q Consensus 171 ~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~-~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 249 (499)
+|..+++.+...+.....+||+.|++.++++++..++++ +.+|+|+...+.+++|+ +...+
T Consensus 178 ~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------------~~i~~ 239 (465)
T TIGR00894 178 LGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK------------------KYINS 239 (465)
T ss_pred HHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH------------------HHHHh
Confidence 999999988776655423699999999888877666554 45677753211111111 00000
Q ss_pred HHHHHH-hhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHH
Q 010848 250 AAEEEL-RKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVG 327 (499)
Q Consensus 250 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 327 (499)
..+++. +.+...+++++++++..+...+.. +....+.+....|.|.+++ ..|++..+.+....++.. +..++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~-~~~i~ 313 (465)
T TIGR00894 240 SLQGQKGSTRQSLPIKAIPKSLPVWAIWFAI-----FGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL-FAWLC 313 (465)
T ss_pred hcccccCCCCCCCCHHHHhcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH-HHHHH
Confidence 000000 111123467788887766544332 2222334455567787775 568877776766655554 46889
Q ss_pred HHHHHHHhhccCChHHHH---HhhHHHHHHH---HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccc
Q 010848 328 TIVGIYLIDHFGRKKLAL---SSLAGVIISL---VLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLN 401 (499)
Q Consensus 328 ~~~~g~l~dr~grr~~~~---~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (499)
.+++|++.||+++|+... .......++. ....+....... .. +..+..+.+.. ....+..+..+...
T Consensus 314 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~l~~-~~~~~~~~~~~~~~ 386 (465)
T TIGR00894 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA----AF--YLTIIILTLAN-AVSSGPLAGVLINS 386 (465)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC----ch--HHHHHHHHHHH-HHhhhhhhhhhhch
Confidence 999999999976542210 0001111111 111111111010 01 11111122111 11111223333444
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchhhHHHHHHHHHHHHHH
Q 010848 402 SEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV---GTGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 402 ~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~~~~ 459 (499)
.|..|. .++.+.|+.+..+.+++++.+.+.+.+.+.. +|...|.+.++..+++.++.
T Consensus 387 ~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 387 LDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred hhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 566555 8999999999999999988888777655432 25567777777777665543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=228.65 Aligned_cols=399 Identities=17% Similarity=0.147 Sum_probs=266.8
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVF 111 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~ 111 (499)
+.+.+..-+|...+-+..-.-+.+.|.+.+|.+. +..+.+.+.|.+.+.|.++-++.|.++||.+.|..+.+++++.
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 3444444567777777777778889999988753 3345688999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhh--hhccCCCCc
Q 010848 112 TAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN--LAFTEVPGT 189 (499)
Q Consensus 112 ~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~--~~~~~~~~~ 189 (499)
++.+++.+++++...+.+.-+++|...|...|.+...++.|+|+++||+..+.....-++|..+.+.+. ..+.. ..+
T Consensus 105 ai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~-~~~ 183 (448)
T COG2271 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF-HGG 183 (448)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh-ccc
Confidence 999999999999999999999999999999999999999999999999999998888888887777665 33333 237
Q ss_pred hHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhc
Q 010848 190 WRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFK 268 (499)
Q Consensus 190 Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (499)
||..|++.++.+++..++ ++.++|+|+-.-.. +.|+.+ +++.+..+++++.+.-...+.-.+.+++
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~~~------------~d~~e~~~~~~~~~~ls~~~i~~~YVL~ 250 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEEYR------------GDPLEIYEEEKENEGLTAWQIFVKYVLK 250 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHHhh------------cCchhhhhhhccCCCccHHHHHHHHHHc
Confidence 999999999888775555 45578888632111 111110 0000000000000000001122345678
Q ss_pred chhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHH
Q 010848 269 SKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKKLAL 345 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~ 345 (499)
||.+|...+....+.. .-+.+..+.|.|+.+ .|++........ ..+-.+.++|++++||++||+ |||....
T Consensus 251 Nk~iW~la~a~vfvYi-----vR~gi~dW~p~YL~e~k~~s~~~a~~a~-~lfE~agl~G~Ll~GwlSDklfkgrR~p~~ 324 (448)
T COG2271 251 NKLIWLLALANVFVYV-----VRYGINDWGPLYLSEVKGFSLVKANWAI-SLFEVAGLPGTLLAGWLSDKLFKGRRGPMA 324 (448)
T ss_pred ChHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHhcCCCHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence 8877765554433322 234566788988865 566655544444 344455799999999999997 4554432
Q ss_pred HhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHH-H
Q 010848 346 SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI-S 424 (499)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-~ 424 (499)
..+ ++...+.+....... +. ........+.. .+++..|..-+.-..+.|..|.+.-|++.|+...++++ +
T Consensus 325 ~i~--~~~i~~~~~~~w~~~-~~--~~~l~~~~l~~----iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~G 395 (448)
T COG2271 325 LIF--MLLITASLVLYWLAP-NG--SYLLDAILLFI----IGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIG 395 (448)
T ss_pred HHH--HHHHHHHHHHHHcCC-Cc--cHHHHHHHHHH----HHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhh
Confidence 221 111111111111111 11 11111112222 22222233333345667999999999999999999999 6
Q ss_pred HHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHh
Q 010848 425 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
+.......+.+.|..||...|+++.+.++++.+.....
T Consensus 396 a~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 396 AALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred HHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 66666666666677899999998888887776655443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=234.32 Aligned_cols=376 Identities=16% Similarity=0.167 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH
Q 010848 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADV 109 (499)
Q Consensus 30 ~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~ 109 (499)
.....+....+..++..++..++.+++|.+.++++.. ....++..+++.+|+.++++++|+++||+|||++++.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 89 (413)
T PRK15403 13 ATLFFPMALILYDFAAYLTTDLIQPGIINVVRDFNAD---VSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGAL 89 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHH
Confidence 3445555667788888899999999999999998753 3334678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCc
Q 010848 110 VFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT 189 (499)
Q Consensus 110 l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 189 (499)
++.++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++.++.......+|..+++.++..+.+. .+
T Consensus 90 ~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-~g 168 (413)
T PRK15403 90 IFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-VH 168 (413)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999999999999999999999887788888999999999999999998888899999999888766543 36
Q ss_pred hHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhc
Q 010848 190 WRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFK 268 (499)
Q Consensus 190 Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (499)
||+.|++.++..++..+. .+.+||+++. ++++... + +....++++++
T Consensus 169 w~~~f~~~~~~~~i~~~~~~~~lp~~~~~----~~~~~~~------------------------~----~~~~~~~~ll~ 216 (413)
T PRK15403 169 WKVLFAIIAVMGLIAFVGLLLAMPETVKR----GAVPFSA------------------------K----SVLRDFRNVFR 216 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccc----cCCCCCh------------------------H----HHHHHHHHHHc
Confidence 999999988877776554 4557887531 1000000 0 00012345677
Q ss_pred chhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHh
Q 010848 269 SKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS 347 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 347 (499)
+|+++...+..... .........+.|.++++ .|.+..+.++.. .+..++..+++.+.+++.+|..+++.....
T Consensus 217 ~~~~~~~~l~~~~~-----~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 290 (413)
T PRK15403 217 NRLFLTGAATLSLS-----YIPMMSWVAVSPVILIDAGGMTTSQFAWTQ-VPVFGAVIVANAIVARFVKDPTEPRFIWRA 290 (413)
T ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHhChHHHHHhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence 77766543332111 11222333456777765 477766665544 333444567777777766444443333222
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHH
Q 010848 348 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI 427 (499)
Q Consensus 348 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i 427 (499)
.....++..++........+ . . +.......++...... ..+......-+. ....++++.++.+..+......
T Consensus 291 ~~~~~ig~~l~~~~~~~~~~----~-~-~~~~~~~~l~~~G~~~-~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~ 362 (413)
T PRK15403 291 VPIQLVGLALLIVGNLLWPH----V-W-LWSVLGTSLYAFGIGL-IFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAV 362 (413)
T ss_pred HHHHHHHHHHHHHHHHHccc----c-H-HHHHHHHHHHHHHHHH-HhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHH
Confidence 22222222222211111111 0 1 1111122211111111 111221111111 1123677777777777666666
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 010848 428 VAQTFLTVAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
+......+.+. +....|...++++.+..
T Consensus 363 ~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 363 SVEIGRWLWFN-GGRLPFHLLAVVAGVIV 390 (413)
T ss_pred HHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence 66555555444 44455655555544443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=235.55 Aligned_cols=359 Identities=21% Similarity=0.226 Sum_probs=234.9
Q ss_pred HHHhhhhhhchhcchhhHHh-hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q 010848 39 GIGGLLFGYDTGVISGALLY-IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII 117 (499)
Q Consensus 39 ~l~~~~~g~~~~~i~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~ 117 (499)
.+..++..++.+++.+.+|. +.++++. +....+++.+.+.+++.+++++.|+++||+||||++..+.+++.++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (399)
T PRK05122 21 VMFTFISYLTIGLPLAVLPGYVHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLL 97 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHH
Confidence 34566667777777778875 5667653 4455788999999999999999999999999999999999998888776
Q ss_pred HHhc---C-----chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCc
Q 010848 118 MAAA---P-----DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT 189 (499)
Q Consensus 118 ~~~a---~-----s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 189 (499)
++++ + ++..+++.|+++|++.+...+....++.|+.|+|+|+++.+........|..+++.++..+.+. .+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g 176 (399)
T PRK05122 98 YLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW-GG 176 (399)
T ss_pred HHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc-cc
Confidence 6543 2 4668999999999999999999999999999999999999998888888888888887766553 35
Q ss_pred hHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcc
Q 010848 190 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKS 269 (499)
Q Consensus 190 Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (499)
||+.+++..+..++..+.....||+++. +++++ +.++.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------------------~~~~~~~~ 217 (399)
T PRK05122 177 LAGLGLLIMLLALLGLLLARPRPAVPPV---KGERL------------------------------------PFRRVLGR 217 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cccch------------------------------------hHHHHHHH
Confidence 9999887766555444333333433210 00000 00000110
Q ss_pred hhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhH
Q 010848 270 KEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLA 349 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 349 (499)
.+....... ... .+......+.|.+.++.+.+. .+... .....+..++.++.+++.||++||+....+..
T Consensus 218 --~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~ 287 (399)
T PRK05122 218 --VWPYGMGLA-LAS----IGFGTIATFITLYYAARGWDG--AALAL-TLFGVAFVGARLLFGNLINRLGGLRVAIVSLL 287 (399)
T ss_pred --HHHHHHHHH-HHH----HHHHHHHHHHHHHHHHccccc--chHHH-HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 000000000 000 011122234555565555532 22222 23344467888999999999999988766655
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHH
Q 010848 350 GVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVA 429 (499)
Q Consensus 350 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~ 429 (499)
...++..++... ++ . +.......+. .+......+.......|.+|++.|+++.|+.+....++..+++
T Consensus 288 ~~~~~~~~~~~~----~~-----~--~~~~~~~~l~-G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 355 (399)
T PRK05122 288 VEILGLLLLWLA----PS-----P--WMALIGAALT-GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITG 355 (399)
T ss_pred HHHHHHHHHHHh----cc-----H--HHHHHHHHHH-HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333221 11 1 1111111111 1111112233334556888999999999999999888888888
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHh
Q 010848 430 QTFLTVAELVGTGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 430 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
.....+.+..|++..|.+.++..+++.+...++
T Consensus 356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 356 PLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888777776655443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=233.05 Aligned_cols=364 Identities=19% Similarity=0.164 Sum_probs=241.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHH
Q 010848 28 NMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLA 107 (499)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~ 107 (499)
+++.++..+...+..+...++..++.+.+|.+.+|++.. ....++..+.+.+++.+++++.|+++||+||||++..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAG---AEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 456677777788888988888888888999999998753 33457788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCC
Q 010848 108 DVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVP 187 (499)
Q Consensus 108 ~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 187 (499)
..+..++++.+.++++++.+++.|+++|++.+...+....++.|++|+++|++..+........|..+++.++..+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~- 163 (406)
T PRK15402 85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV- 163 (406)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 9999999999999999999999999999999998899999999999999999888877777777888888877665543
Q ss_pred CchHHHHHhhhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhh
Q 010848 188 GTWRWMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV 266 (499)
Q Consensus 188 ~~Wr~~f~~~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (499)
.+||+.|++.++..++..+.. +..||+++.. +++++. ++ ...+.+++
T Consensus 164 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------------~~----~~~~~~~~ 211 (406)
T PRK15402 164 LPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLSL-------------------------KE----LGRDYKLV 211 (406)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cccccH-------------------------HH----HHHHHHHH
Confidence 369999998887776655543 4567765321 000000 00 00112345
Q ss_pred hcchhhHHHHHHHHHHHHHHhccCcceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Q 010848 267 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL 345 (499)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 345 (499)
+++|+++......... .. .......+.|.++ +..+.++.+.+..... ..++..++.++.+++.||+++|+...
T Consensus 212 ~~~~~~~~~~~~~~~~-~~----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~-~~~~~~~g~~~~g~l~~r~~~~~~~~ 285 (406)
T PRK15402 212 LKNRRFVAGALALGLV-SL----PLLAWIALSPVILISGEQLSSYEYGLLQVP-VFGALIAGNLTLARLTSRRPLRSLIR 285 (406)
T ss_pred HcCcHHHHHHHHHHHH-HH----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6666655433222111 11 0111123346554 4567776655544433 33456788999999999999999877
Q ss_pred HhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHH
Q 010848 346 SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN 425 (499)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~ 425 (499)
.+.....++..++........ . ...+. ..+..++...... ..+...... ...+++.|++..+..+..+.++.
T Consensus 286 ~~~~~~~~g~~~~~~~~~~~~-~----~~~~~-~~~~~~~g~g~~~-~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~ 357 (406)
T PRK15402 286 MGLWPMVAGLLLAALATVISS-H----AYLWL-TAGLSLYAFGIGL-ANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIF 357 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccc-c----cHHHH-HHHHHHHHHHHHH-HhhhHHHHH-hhhccccccHHHHHHHHHHHHHH
Confidence 666555555444433211111 0 11111 1111111111111 112222222 22344789999999999888888
Q ss_pred HHHHHHHHHHHHHcCC
Q 010848 426 LIVAQTFLTVAELVGT 441 (499)
Q Consensus 426 ~i~~~~~~~~~~~~~~ 441 (499)
.+++.....+.+..++
T Consensus 358 ~~g~~~~~~l~~~~~~ 373 (406)
T PRK15402 358 TVGIELSKHAYLGGGN 373 (406)
T ss_pred HHHHHHHHhcccCCch
Confidence 8887777766555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=231.88 Aligned_cols=341 Identities=18% Similarity=0.247 Sum_probs=230.4
Q ss_pred hhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 010848 42 GLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA 121 (499)
Q Consensus 42 ~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a 121 (499)
.+..+++..++.+..|.+.+|++. +....+++.+++.++..+++++.|+++||+|||+++..+.++..++.++++++
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 90 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS 90 (385)
T ss_pred HHHHHHHHHHhcccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 455566777888889999999865 33446889999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHH
Q 010848 122 PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA 201 (499)
Q Consensus 122 ~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~ 201 (499)
++++.+++.|+++|++.+...+....++.|++|+|+|++..+.......+|..+++.++..+.+. .+||+.|++.++..
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~~~~~~~~~ 169 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-LSWHAIFAFLSLAG 169 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887766543 35999999887766
Q ss_pred HHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHH
Q 010848 202 IIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGA 280 (499)
Q Consensus 202 ~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (499)
++..+.. +..||+++.. ++++. + + .....++.+++++.+...+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~----~~~~~-------------~-----------~-----~~~~~~~~~~~~~~~~~~~~~~ 216 (385)
T TIGR00710 170 ILLSALIFFILPETLPYE----ARIQI-------------S-----------T-----YFETFLLLLKSKMFWGYALIYG 216 (385)
T ss_pred HHHHHHHHHhCCCCCCCc----ccCCH-------------H-----------H-----HHHHHHHHHcCchhHHHHHHHH
Confidence 6554443 4567764311 00000 0 0 0011234455555544332211
Q ss_pred HHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 010848 281 GLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS 359 (499)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~ 359 (499)
... ........+.|.+++ ..|.++...+..... ...+..++.++.+++.||++||+.+..+.....++..++.
T Consensus 217 ~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 217 ASF-----GGFFAFFSGAPFVYIDIMGVSPSVFGLLFAL-NIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HHH-----HHHHHHHHcChHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 111 111222345566654 678877666655544 4445788999999999999999887766555554444433
Q ss_pred HHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010848 360 WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 433 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~ 433 (499)
....... . . +..................+.......|.+| +.|+++.++.+...+..+.+.+....
T Consensus 291 ~~~~~~~----~--~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 291 ITAILGL----G--S-WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHhcc----c--h-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211110 0 0 1111111111111122223444566678777 56888888888887766656555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=229.99 Aligned_cols=356 Identities=18% Similarity=0.188 Sum_probs=231.3
Q ss_pred hhhhhchhcchhhHHh-hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH---
Q 010848 43 LLFGYDTGVISGALLY-IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM--- 118 (499)
Q Consensus 43 ~~~g~~~~~i~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~--- 118 (499)
+......++..+.+|. +.+|++. +....++..+.+.+++.++++++|+++||+||||+++.+.+...++++..
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~ 101 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLA 101 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhh
Confidence 3333344555566664 5677753 45567899999999999999999999999999999999988877665432
Q ss_pred Hh-----cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 010848 119 AA-----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWM 193 (499)
Q Consensus 119 ~~-----a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~ 193 (499)
+. .++++.+++.|+++|++.+...+...+++.|+.|+|+|+++++........|..+++.++..+.+. .+||+.
T Consensus 102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~ 180 (392)
T PRK12382 102 AILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH-FGFAAL 180 (392)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-cChHHH
Confidence 22 357889999999999999999999999999999999999999999988888999998887666543 359988
Q ss_pred HHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhH
Q 010848 194 LGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIR 273 (499)
Q Consensus 194 f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (499)
+.+..+..++........||++.. ++++++ .++ ..+..+ .+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------------~~~--------~~~~~~-~~~~~ 224 (392)
T PRK12382 181 ALTTMVLPLLAWAFNGTVRKVPAH---AGERPS------------------------LWS--------VVGLIW-KPGLG 224 (392)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCC---cccCch------------------------HHH--------HHHHHH-HhHHH
Confidence 776655443333332233443210 000000 000 000001 01110
Q ss_pred HHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHH
Q 010848 274 LAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVII 353 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i 353 (499)
. .+. . .+......+.|.++++.+.+. .+.. ......+..++.++.+++.||+++|+.+..+.....+
T Consensus 225 ~-~l~-----~----~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 291 (392)
T PRK12382 225 L-ALQ-----G----VGFAVIGTFVSLYFASKGWAM--AGFT-LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETV 291 (392)
T ss_pred H-HHH-----H----HHHhHHHHHHHHHHHhcCCch--hHHH-HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHH
Confidence 0 000 0 111122345566666666543 2222 2334444678889999999999999887766555544
Q ss_pred HHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010848 354 SLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 433 (499)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~ 433 (499)
+..++... .+ . +.......+.... .....+...+...|.+|++.|+++.|+.++...+++.+++....
T Consensus 292 ~~~~~~~~----~~-----~--~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g 359 (392)
T PRK12382 292 GLLLLWLA----PT-----A--WVALAGAALTGAG-CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG 359 (392)
T ss_pred HHHHHHHc----cc-----H--HHHHHHHHHHHHH-HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333221 10 1 1111111111111 11123344456678899999999999999999999999999988
Q ss_pred HHHHHcCCchhhHHHHHHHHHHHHHHHHhc
Q 010848 434 TVAELVGTGATFLILAGIAVLAVVFVILFV 463 (499)
Q Consensus 434 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 463 (499)
.+.+..|+...|.+.+++.+++.+..+++.
T Consensus 360 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 360 MLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 888988999899988888887777665543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-26 Score=226.47 Aligned_cols=356 Identities=14% Similarity=0.169 Sum_probs=241.9
Q ss_pred HHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA 115 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 115 (499)
....++.++.+.+.+++++.+|.+.+++|. +....+++.+.+.+++.+++++.|+++||+|||+++..+.++..+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 9 LLLLCGLLLLTLAIAVLNTLVPLWLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467888899999999999999988864 34557899999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 010848 116 IIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLG 195 (499)
Q Consensus 116 ~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~ 195 (499)
.++++++|++.+++.|+++|++.+...+.....+.|..|+++|++.++.......+|..+++.++..+.+. .++..++
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~~~~~~~ 163 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE--LMSVLPW 163 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccchHHH
Confidence 99999999999999999999999999988888888999999999999999999999999999988766543 1222223
Q ss_pred hhhHHHHHHH-HHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHH
Q 010848 196 VSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRL 274 (499)
Q Consensus 196 ~~~~~~~l~~-~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (499)
..+......+ +.....+|++. ++ ++..+..+.+++|..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~------~~---------------------------------~~~~~~~~~~~~~~~~~ 204 (381)
T PRK03633 164 VTGLVLAAILPLLFTRILNQQA------EN---------------------------------HDSTSIWPMLKLRQARL 204 (381)
T ss_pred HHHHHHHHHHHHHHhcccCCCC------CC---------------------------------CCCCCHHHHHHhcchHH
Confidence 2222221111 11111222110 00 00012233445554443
Q ss_pred HHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 010848 275 AFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS 354 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~ 354 (499)
..... .... ........+.|.+.++.|.+....+.+.... .....++.+..+++.||+++|+.+..+.....++
T Consensus 205 ~~~~~-~~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~ 278 (381)
T PRK03633 205 GVNGC-IISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALL-VSAGILGQWPIGRLADRFGRLLVLRVQVFVVILG 278 (381)
T ss_pred HHHHH-HHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHH
Confidence 22111 1111 1112233467888888888766666655443 3457889999999999999998876655544443
Q ss_pred HHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010848 355 LVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT 434 (499)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~ 434 (499)
...+. . . ... .......++ ......|...++..|..|++.++...+..+....++..+++...+.
T Consensus 279 ~~~~~-----~-~----~~~-~~~~~l~g~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~ 343 (381)
T PRK03633 279 SIAML-----S-Q----AAM-APALFILGA----AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAM 343 (381)
T ss_pred HHHHh-----h-h----HHH-HHHHHHHHH----HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221 0 0 001 111111111 1112345566677788888877777777777777888899988888
Q ss_pred HHHHcCCchhhHHHHHHHHHHH
Q 010848 435 VAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 435 ~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
+.|+.++...|.+.+.+.++..
T Consensus 344 l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 344 LMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHhCccHHHHHHHHHHHHHH
Confidence 8888888878887777766553
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=239.55 Aligned_cols=371 Identities=16% Similarity=0.171 Sum_probs=239.7
Q ss_pred hhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 010848 42 GLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA 121 (499)
Q Consensus 42 ~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a 121 (499)
.+...+|....+...|++.++++. +....+++.+++.++..+++++.|+++||+|||+++..+.++..++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 345566777888889999988865 33446889999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHH-HhhhhccCCCCchHHHHHhhhHH
Q 010848 122 PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSY-LVNLAFTEVPGTWRWMLGVSAVP 200 (499)
Q Consensus 122 ~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~-~~~~~~~~~~~~Wr~~f~~~~~~ 200 (499)
++++.+++.|+++|++.|...+...+++.|++|+|+|++..+.......+|..+++ .++..+... .+||+.|++.++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 159 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGII 159 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-CCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888998888 455444433 4699999988776
Q ss_pred HHHHHH-HHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHH
Q 010848 201 AIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAG 279 (499)
Q Consensus 201 ~~l~~~-~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (499)
.++..+ ..++.||+|+....+.++++.. ++ .+.+ ++.+++..++.....++++++|.++...+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQSCGLPPAEEMPN---------EE--PDGD---AEKKEEELTKKQIFLQYVLLNKVLWYISLGY 225 (379)
T ss_pred HHHHHHHHheeeCCCccccccCccccCcc---------cc--cccc---cccccccccchHHHHHHHHhcchHHHHHHHH
Confidence 655443 3455677765321111100000 00 0000 0000000001111234556666655433322
Q ss_pred HHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHhhHHHHHHHHH
Q 010848 280 AGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR-KKLALSSLAGVIISLVL 357 (499)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~i~~~~ 357 (499)
... .........+.|.+++ ..|.+..+.+..... ......++.++.+++.||..+ |+.... ..........
T Consensus 226 ~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~~~ 298 (379)
T TIGR00881 226 VFV-----YVVRTGILDWSPLYLTQEKGFSKEKASWAFTL-YELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALIIVS 298 (379)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHHHH
Confidence 211 1112233345666664 567776666655544 444578899999999998643 333221 1111111111
Q ss_pred HHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 358 LSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 437 (499)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~ 437 (499)
+..... ... . . . +.... ..+....+..+..+..+.+..|.+|++.|+++.|+.+....+++.+++...+.+.+
T Consensus 299 ~~~~~~-~~~--~-~-~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 299 LLVYWL-NPA--A-N-P-LMDLI-CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred HHHHhc-Ccc--h-h-H-HHHHH-HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 111110 000 0 0 1 11111 11111222223334445677899999999999999999999999999998888888
Q ss_pred HcCCchh
Q 010848 438 LVGTGAT 444 (499)
Q Consensus 438 ~~~~~~~ 444 (499)
..|+...
T Consensus 372 ~~g~~~~ 378 (379)
T TIGR00881 372 GFGWAGA 378 (379)
T ss_pred hhccccc
Confidence 8877644
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=228.64 Aligned_cols=350 Identities=13% Similarity=0.056 Sum_probs=240.2
Q ss_pred HHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q 010848 40 IGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA 119 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~ 119 (499)
++.++..+..++....+|....|++ .+....+++.+++.++..+++++.|+++||+||||++..+.++..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGT---GSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 4566666777777888888777764 3455678899999999999999999999999999999999999999888888
Q ss_pred hcC-----chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 010848 120 AAP-----DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWML 194 (499)
Q Consensus 120 ~a~-----s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f 194 (499)
+++ +++.+++.|+++|++.+...+...+++.|++|+++|++..+.......+|..+++.++..+.+.. +||+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~~ 161 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWAI 161 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence 877 99999999999999999999999999999999999999999999999999999998877765433 599999
Q ss_pred HhhhHHHHHHHHHHHhc--cCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhh
Q 010848 195 GVSAVPAIIQFVLMLFM--PESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEI 272 (499)
Q Consensus 195 ~~~~~~~~l~~~~~~~l--pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 272 (499)
++.++..++..+..+.+ ||+++. ++++.. ++ ..++. ....+.++++|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------~~--------~~~~~----~~~~~~~~~~~~~ 212 (365)
T TIGR00900 162 WVDAVGFAISALLIVSVRIPELAAS-----EIQALS------------NA--------VLRDT----REGIKFVLKNPLL 212 (365)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCc-----cccccc------------hh--------HHHHH----HhHHHHHHcCcHH
Confidence 98877666554444333 333210 000000 00 00000 0123345566665
Q ss_pred HHHHHHHHHHHHHHhccCcceeh-hchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHH
Q 010848 273 RLAFLAGAGLQAFQQFTGINTVM-YYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG 350 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 350 (499)
+............ ..... .+.|++.++ .+.+..+.+..... ...+..++.++.+++.||.+||+....+...
T Consensus 213 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 286 (365)
T TIGR00900 213 RTLLLLALLFNLV-----FAPAIVALFPYVQSKYLGRGSTHYGWVLAA-FGLGALLGALLLGLLGRYFKRMALMTGAIFV 286 (365)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHhCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 5443332221111 11112 456777764 67776666655544 3445788899999999999999887665444
Q ss_pred HHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHH
Q 010848 351 VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ 430 (499)
Q Consensus 351 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~ 430 (499)
..++...+... . + . .+....... ...+......+...++..|.+|++.|+++.|+.+....++..+++.
T Consensus 287 ~~~~~~~~~~~---~-~---~---~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 355 (365)
T TIGR00900 287 IGLAILVVGLT---P-P---N---FPLFLVLWF-AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLI 355 (365)
T ss_pred HHHHHHHHHhh---c-h---h---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333332221 1 0 0 111111111 1122222234556678889999999999999999999999988888
Q ss_pred HHHHHHHHc
Q 010848 431 TFLTVAELV 439 (499)
Q Consensus 431 ~~~~~~~~~ 439 (499)
..+.+.|..
T Consensus 356 ~~g~l~~~~ 364 (365)
T TIGR00900 356 LAGPLADHL 364 (365)
T ss_pred HHHHHHHHc
Confidence 877776653
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=234.60 Aligned_cols=364 Identities=21% Similarity=0.271 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVF 111 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~ 111 (499)
.+..++.++.+++.-.|...+....+.++++||.. ...+|++.+.+.+.+.+.+|++|+++|||.||+++.++..+|
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~---~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNIS---DSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCC---chhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34556667889999999999999999999888753 334588999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchH
Q 010848 112 TAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWR 191 (499)
Q Consensus 112 ~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr 191 (499)
++++++++++..++++.++|.+.|+|.+...++.+++++|.+|..+|++.++++.....+|..+|++.+..+.+....||
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888877777799
Q ss_pred HHHHhhhHHHHHHHHHHH-hccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhccc---chhhhh
Q 010848 192 WMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV---RYLDVF 267 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~~-~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ 267 (499)
|.|+..++++++..++.+ +.+|.+| +.+++... +.+..+.... ..+.+.
T Consensus 189 ~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~----------------------~~~~~~~~ts~~kDl~~l~ 241 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG----------------------ENKMVKPFTSVWKDLKVLA 241 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhccCccc-----cccccccc----------------------CCcCCCCccchHHHHHHHH
Confidence 999999999988777754 5566543 11111100 0000000011 111222
Q ss_pred cchhhHHHHHHHHHHHHHHhccCcceehhchHHHH----HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCh--
Q 010848 268 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV----QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK-- 341 (499)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-- 341 (499)
+++......+. ....+.. .....++.|.+. ...|++.+ .+.++......++.+|.+.+|.++||+.|+
T Consensus 242 ~~~v~v~~sl~---~~a~~fv--~Gs~sww~p~~~~~~~~~~~~~~~-~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~ 315 (493)
T KOG1330|consen 242 KIKVFVLSSLG---IIAAQFV--IGSLSWWAPAFIYYSYELIGFDHN-ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFP 315 (493)
T ss_pred ccCceeeehHH---HHHHHHh--ccccchhhhhHHHHHHHHhCCccc-cchhhhhHHHhhchhhheehHHHHHHHHHhcc
Confidence 32332222111 1122212 223344555433 33454443 345556666677899999999999995332
Q ss_pred -----HH-HHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHH
Q 010848 342 -----KL-ALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGG 415 (499)
Q Consensus 342 -----~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 415 (499)
+. ..........+..++.+ .....+ ......+.++.++.....++ .+ ....+..|+.|++.|+++.+
T Consensus 316 ~~~~~~~~q~~~~~g~~~s~~~L~~-~~~~~~---~s~~~~~il~~~g~~~~~~~--~a-~n~~i~l~vV~p~~Rt~a~a 388 (493)
T KOG1330|consen 316 NSGTLRASQLSAALGAPLSIPFLFL-FPAFTS---SSMIFGLILFLVGETISWFN--WA-TNNPIFLEVVPPSRRTTAYA 388 (493)
T ss_pred cccchhHHHHHHhhhhhHHHHHHHH-HHhhhh---HHHHHHHHHHHHHHHHHhcc--cc-cccceeeEecCcccccHHHH
Confidence 11 11111111222211111 111111 11122222222222222222 22 22234568889999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHH
Q 010848 416 MSATVNWISNL-IVAQTFLTVAEL 438 (499)
Q Consensus 416 ~~~~~~~l~~~-i~~~~~~~~~~~ 438 (499)
+...+..+.+- ..+++.+.+.+.
T Consensus 389 ~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 389 LDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHHHHhccCCCcceehhHHHH
Confidence 88877655443 344466666554
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=235.09 Aligned_cols=361 Identities=22% Similarity=0.328 Sum_probs=256.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHhhhhhhhhh
Q 010848 67 NQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP--DPYVLILGRLLVGLGVGIASVT 144 (499)
Q Consensus 67 ~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~--s~~~li~~R~l~Gig~g~~~~~ 144 (499)
+.+...++++.+.++.|+++++++.|+++||+|-|+++.++.++.++++++...+. +++.+++.|++||++.|..+|+
T Consensus 69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa 148 (466)
T KOG2532|consen 69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPA 148 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhh
Confidence 34556789999999999999999999999999999999999999999999987654 5568899999999999999999
Q ss_pred HHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH-hccCChhHHhhcCC
Q 010848 145 APVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSD 223 (499)
Q Consensus 145 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~-~lpesp~~l~~~~~ 223 (499)
...+.+.|+|++||++..+....+..+|.+++..+++.+.+...||+++||+.++.+++..++++ +..|+|..+....+
T Consensus 149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~ 228 (466)
T KOG2532|consen 149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISE 228 (466)
T ss_pred hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH
Confidence 99999999999999999999999999999999888888877656799999999999998887765 45777764322222
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhh-hcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHH
Q 010848 224 KEKAILVLSKIYDIARLEDEIDHLSAAAEEELRK-KKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV 302 (499)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 302 (499)
+ |.+.+.+.+.++..+ +++.+++++++++.++..++.. +....++.....|.|.|+
T Consensus 229 ~------------------El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~-----f~~~~~~~~l~~y~PtY~ 285 (466)
T KOG2532|consen 229 K------------------ELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISA-----FGGNWGFYLLLTYLPTYL 285 (466)
T ss_pred H------------------HHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHH-----HHHHHHHHHHHHHhhHHH
Confidence 2 222222222222111 2467899999999888765553 334445666778889988
Q ss_pred H-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCh-------HHHH--HhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 303 Q-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK-------KLAL--SSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 303 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-------~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
+ ..+++..+.+++..++... ..+..+++|.++||+.+| +-+. ++..+..+.++.+. +. .... .
T Consensus 286 ~~VL~f~v~~~G~~salP~l~-~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~--~~-~~~~---~ 358 (466)
T KOG2532|consen 286 KEVLGFDVRETGFLSALPFLA-MAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA--FT-SDEH---R 358 (466)
T ss_pred HHHhCCChhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee--ec-CCCc---c
Confidence 6 6789988888888888765 789999999999998663 1111 22222222222222 11 1111 1
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCchhhHHHH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---LVGTGATFLILA 449 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~---~~~~~~~f~~~~ 449 (499)
+..++.+.+...+ .|..............+++-+...|+.+.+..+.+++.+.+...+.. ...|+.+|++.+
T Consensus 359 ---~~a~~~l~~~~~~--~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a 433 (466)
T KOG2532|consen 359 ---LLAVILLTIAIGL--SGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAA 433 (466)
T ss_pred ---hHHHHHHHHHHHH--cccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHH
Confidence 1222222221111 12222222233333256677888899999999988888887776552 336788999999
Q ss_pred HHHHHHHHHHHHh
Q 010848 450 GIAVLAVVFVILF 462 (499)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (499)
++.+++.++..++
T Consensus 434 ~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 434 GILIVGNIIFLFF 446 (466)
T ss_pred HHHHHhchheeEe
Confidence 9998887654444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=237.56 Aligned_cols=377 Identities=14% Similarity=0.087 Sum_probs=235.6
Q ss_pred chhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHH
Q 010848 48 DTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVL 127 (499)
Q Consensus 48 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~l 127 (499)
+...++..+|.+.++++.+. ...+++.+.+.++..++.++.|+++||+|||++++.+.+++.+++++++++++++.+
T Consensus 34 ~~~~~~~~~~~i~~~~g~s~---~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 110 (455)
T TIGR00892 34 FPKAVTVFFKELQQIFQATY---SETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIEL 110 (455)
T ss_pred hhcchhhhHHHHHHHhCcch---hHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHH
Confidence 33456777888888887533 334778888999999999999999999999999999999999999999999999888
Q ss_pred HH-HHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHH
Q 010848 128 IL-GRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 206 (499)
Q Consensus 128 i~-~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~ 206 (499)
++ .|+++|++.|...+....++.|++| ++|+++.+....+..+|..+++.++..+.+.. +||+.|++.+++.++..+
T Consensus 111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~~v 188 (455)
T TIGR00892 111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHCCV 188 (455)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 65 5799999999877777788899996 78999999998888888888887766554433 699999999887766554
Q ss_pred HHHhc-cCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHH
Q 010848 207 LMLFM-PESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAF 285 (499)
Q Consensus 207 ~~~~l-pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (499)
..+++ |+.+.....+.+.++ ....... .++.+ .+...++.++....+.+++|+++........
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 252 (455)
T TIGR00892 189 CGALMRPVGPSQRVSKSKSKE------GLPPDGS-TKKLS-----KKSTAEKINRFLDFSLFTHRGFLVYLSGNVI---- 252 (455)
T ss_pred HHHHhCCCCcccccccccccc------cCCCCCc-ccccc-----ccchhhhhhhhcchHHhcCchHHHHHHHHHH----
Confidence 44333 332211000000000 0000000 00000 0000000011111246677766543332211
Q ss_pred HhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHHhhHHHHHHHHHHHHHHh
Q 010848 286 QQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKKLALSSLAGVIISLVLLSWAFI 363 (499)
Q Consensus 286 ~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~~~~~~~i~~~~~~~~~~ 363 (499)
...+......+.|.+.++.|++....+...+.. ..+..++.++++++.||. ++|+...........++..+....
T Consensus 253 -~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~- 329 (455)
T TIGR00892 253 -MFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSII-GFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL- 329 (455)
T ss_pred -HHHHccchHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 112233444566777777888777766655443 445678888899999973 334333322211111111111111
Q ss_pred hCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Q 010848 364 SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV-GTG 442 (499)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~-~~~ 442 (499)
..+ . +. +....+...+......+..+++..|.+|++.++++.|+.+....+++++++...+.+.+.. ++.
T Consensus 330 -~~~------~-~~-~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~ 400 (455)
T TIGR00892 330 -AGD------Y-TG-LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYK 400 (455)
T ss_pred -hch------H-HH-HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcc
Confidence 100 1 11 1111112222222334555677789999999999999999999999999988888777766 477
Q ss_pred hhhHHHHHHHHHHHH
Q 010848 443 ATFLILAGIAVLAVV 457 (499)
Q Consensus 443 ~~f~~~~~~~~~~~~ 457 (499)
..|++.+++.+++.+
T Consensus 401 ~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 401 YIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHHHHHHH
Confidence 777777776665544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-26 Score=227.05 Aligned_cols=372 Identities=16% Similarity=0.141 Sum_probs=242.9
Q ss_pred HHhhhhhhchhcchhhHHhhhhhhccccccc--hhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q 010848 40 IGGLLFGYDTGVISGALLYIKDDFEAVNQSS--FLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII 117 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~--~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~ 117 (499)
++.+..++..+.+.+.+|.+.++++....+. ...+++.+++.++..++++++|+++||+|||+++..+.++..++.++
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 100 (408)
T PRK09874 21 LGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL 100 (408)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH
Confidence 4556667777778888888888876543321 23477889999999999999999999999999999999999999999
Q ss_pred HHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhh
Q 010848 118 MAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVS 197 (499)
Q Consensus 118 ~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~ 197 (499)
+.++++++.+++.|++.|++.+ ..+....++.|+.|+++|++..+........|..+++.++..+.+. .+||+.|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~ 178 (408)
T PRK09874 101 MGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS-YGLRPVFFIT 178 (408)
T ss_pred HHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHH
Confidence 9999999999999999999865 5677788999999999999999999888889999988887766543 3599999998
Q ss_pred hHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHH
Q 010848 198 AVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAF 276 (499)
Q Consensus 198 ~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (499)
++..++..+.. +++||.++. .++++. . ..+ ...+.+++++.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------------~-----~~~--------~~~~~~~~~~~~~~~ 224 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENFQP----VSKKEM-----------------L-----HMR--------EVVTSLKNPKLVLSL 224 (408)
T ss_pred HHHHHHHHHHHHHHhccCccc----ccchhh-----------------h-----HHH--------HHHHhCcCCchHHHH
Confidence 87766655443 445665321 000000 0 000 011223444433322
Q ss_pred HHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHH
Q 010848 277 LAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL---LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVII 353 (499)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i 353 (499)
......... .......+.|.+..+.+.+....+. ........+..++....|++.||++||+.+..+.....+
T Consensus 225 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 300 (408)
T PRK09874 225 FVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVL 300 (408)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 221111111 1111222344555443333222221 111222334567778889999999999987766554443
Q ss_pred HHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010848 354 SLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 433 (499)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~ 433 (499)
..+..... . + . +.......+ .........+...+...+..|++.|++..+.......++..+++.+..
T Consensus 301 ~~~~~~~~---~-~----~---~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G 368 (408)
T PRK09874 301 LLIPMSFV---Q-T----P---LQLGILRFL-LGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGA 368 (408)
T ss_pred HHHHHHHh---c-c----H---HHHHHHHHH-HHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHH
Confidence 33322211 0 0 0 111111111 111111223444455567788899999999999999999989888888
Q ss_pred HHHHHcCCchhhHHHHHHHHHHHHHHHHhc
Q 010848 434 TVAELVGTGATFLILAGIAVLAVVFVILFV 463 (499)
Q Consensus 434 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 463 (499)
.+.+..++...|.+.+++.+++.+..++..
T Consensus 369 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 369 AISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888899988888888777665543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=223.19 Aligned_cols=348 Identities=18% Similarity=0.238 Sum_probs=220.6
Q ss_pred chhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHH
Q 010848 48 DTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVL 127 (499)
Q Consensus 48 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~l 127 (499)
...+....+|.+.+|++. +....++..+.+.++..+++++.|+++||+|||+.+..+.+++.++..++..+++++.+
T Consensus 18 ~~~~~~~~lp~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~ 94 (392)
T PRK10473 18 GIDMYLVGLPRIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF 94 (392)
T ss_pred HHHHHhhhHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 333445678999888864 33445788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH
Q 010848 128 ILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 128 i~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~ 207 (499)
++.|+++|++.+...+....++.|++|+++|++..+.......+|..+++.++..+.+. .+||+.|++.++..++..++
T Consensus 95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 95 LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-FPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888888888887665443 36999999988766665544
Q ss_pred -HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHH
Q 010848 208 -MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ 286 (499)
Q Consensus 208 -~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (499)
.+++||++... ++++++ .. ...++.+++++.+...+........
T Consensus 174 ~~~~~~~~~~~~--~~~~~~------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (392)
T PRK10473 174 SLFILKETRPAR--APAASS------------------------KP--------RENSESLLNRFFLSRLVITTLSVTV- 218 (392)
T ss_pred HHHHcCCCCCcc--cCCccc------------------------hH--------HHHHHHHhCHHHHHHHHHHHHHHHH-
Confidence 45577764310 000000 00 0011234444443332222111111
Q ss_pred hccCcceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhC
Q 010848 287 QFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG 365 (499)
Q Consensus 287 ~~~~~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~ 365 (499)
......+.|.+. +..|.++...+..... ......++.++.+++.||+|||+.+..+.....++..++.....
T Consensus 219 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-- 291 (392)
T PRK10473 219 ----ILTFVNTSPVLLMEQMGFSRGEYAIIMAL-TAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS-- 291 (392)
T ss_pred ----HHHHHHhCHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 111223445554 4568776665554443 34456888999999999999999887766555554444332210
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhh
Q 010848 366 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATF 445 (499)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f 445 (499)
.........+....+..+.. . ....+..|.+.|+ |...+...++..+++...+.+.+..++....
T Consensus 292 ---------~~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~ 356 (392)
T PRK10473 292 ---------HAVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWN 356 (392)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 01111111111111111111 1 2334455555443 3344444455556666666666666665444
Q ss_pred HHHHHHHHHHH
Q 010848 446 LILAGIAVLAV 456 (499)
Q Consensus 446 ~~~~~~~~~~~ 456 (499)
..++...++..
T Consensus 357 ~~~~~~~~~~~ 367 (392)
T PRK10473 357 MLIGILIACSI 367 (392)
T ss_pred HHHHHHHHHHH
Confidence 44444343333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=220.64 Aligned_cols=360 Identities=16% Similarity=0.154 Sum_probs=234.0
Q ss_pred HhhhhhhchhcchhhHHh-hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH-HHHHHHHHHHHH
Q 010848 41 GGLLFGYDTGVISGALLY-IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLL-ADVVFTAGAIIM 118 (499)
Q Consensus 41 ~~~~~g~~~~~i~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~-~~~l~~~~~~~~ 118 (499)
..+..++..++..+.+|. ++++++. +....+++.+.+.++..+.+++.|+++||+||||.++. +..+..++++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 456667777777777764 5667754 44556889999999999999999999999999987655 555566777888
Q ss_pred HhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccch--hhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHh
Q 010848 119 AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL--VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGV 196 (499)
Q Consensus 119 ~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~--~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~ 196 (499)
+++++++.+++.|+++|.+.+...|....++.|+.|+++|++. .+.......+|..+++.++..+.+. .+||+.|++
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~f~~ 160 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-FGFTVMFLT 160 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-cccHHHHHH
Confidence 9999999999999999988888888888899999988877644 4666666778888888877766543 369999999
Q ss_pred hhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHH
Q 010848 197 SAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLA 275 (499)
Q Consensus 197 ~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (499)
.+++.++..+.. +++||+|+...++. + ..+.++.+++++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~~~~ 204 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYPRGAPGAL---T---------------------------------RLEVRGLLASRDTRLL 204 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcccCccccc---C---------------------------------cchhhhhhcCcchHHH
Confidence 888766655554 45888775311000 0 0001123344444433
Q ss_pred HHHHHHHHHHHhccCcceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 010848 276 FLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS 354 (499)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~ 354 (499)
.......... ......+.|.++ +..|.++.+.+..... ..+...++.++++++.||++||+....+.....+.
T Consensus 205 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 278 (375)
T TIGR00899 205 FVACTLMWGC-----NILYIINMPLLIIHELGLPDKLAGLMMGT-AAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAF 278 (375)
T ss_pred HHHHHHHHHH-----HHHHHhhhHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2222111111 111123345554 5667776665554433 23345677889999999999999876554433332
Q ss_pred HHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010848 355 LVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT 434 (499)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~ 434 (499)
...+... . + .+.......+. .+......+....+..|..|++ |+++.++.+...+++..+++...+.
T Consensus 279 ~~~~~~~---~-~-------~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~ 345 (375)
T TIGR00899 279 YTGLAAD---N-S-------LWALLMLQLLN-AIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGI 345 (375)
T ss_pred HHHHHHH---H-H-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 0 0 01111111111 1111112344556778888875 5688899988888999888888888
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHH
Q 010848 435 VAELVGTGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 435 ~~~~~~~~~~f~~~~~~~~~~~~~~ 459 (499)
+.+..++...|.+.++..+++.+..
T Consensus 346 ~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 346 LAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHH
Confidence 8888888888888777776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=223.12 Aligned_cols=337 Identities=16% Similarity=0.182 Sum_probs=223.2
Q ss_pred hchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhH
Q 010848 47 YDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYV 126 (499)
Q Consensus 47 ~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~ 126 (499)
+...++.+.+|.+.++++. +....++..+++.+++.++++++|+++||+|||+++..+..+..+++++++++++++.
T Consensus 20 ~~~~~~~p~~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQ 96 (401)
T ss_pred HHHHHHHhhHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3445667778888888864 3445688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHH
Q 010848 127 LILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 206 (499)
Q Consensus 127 li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~ 206 (499)
+++.|+++|++.+...+....++.|++|+++|++..+.......+|..+++.++..+.+.. +||+.|++.++..++..+
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~~~~~ 175 (401)
T PRK11043 97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITLLLIL 175 (401)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH
Confidence 9999999999998888888899999999999988888777777778888888776665543 699999998877777666
Q ss_pred HHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHH
Q 010848 207 LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ 286 (499)
Q Consensus 207 ~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (499)
..++++|+++. +++++ +..++++++++++.+...+......
T Consensus 176 ~~~~~~~~~~~----~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (401)
T PRK11043 176 PTLRLKPSKKA----RKQSQ--------------------------------DALTFKQLLKSKTYLGNVLIFAACS--- 216 (401)
T ss_pred HHHHcCCCCCc----cccch--------------------------------HHHHHHHHHcChhHHHHHHHHHHHH---
Confidence 65566665421 00000 0012334455555443222111110
Q ss_pred hccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCC
Q 010848 287 QFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGS 366 (499)
Q Consensus 287 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (499)
........+.|.+.++.|++....+... .....+..++.++.+++.||+++|+..........++...+........
T Consensus 217 --~~~~~~~~~~p~~~~~~g~s~~~~g~~~-~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (401)
T PRK11043 217 --AAFFAWLTGSPFILEQMGYSPADIGLSY-VPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH 293 (401)
T ss_pred --HHHHHHHHHhHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1112223456778888888766655443 3334456788888999999999988765444443333332221111111
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 367 SASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 437 (499)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~ 437 (499)
. .. +..+....+.. .......+.......|..| +.|+++.|+.++.+..++..++...+.+.+
T Consensus 294 ~----~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 294 P----SL--VPLLIPFCVMA-AANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred C----cH--HHHHHHHHHHH-HHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1 01 11111111111 1111223444445556666 479999999999888777777776665554
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=228.13 Aligned_cols=345 Identities=25% Similarity=0.406 Sum_probs=232.7
Q ss_pred HHhhhhhhchhcchhhHH-hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q 010848 40 IGGLLFGYDTGVISGALL-YIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM 118 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~ 118 (499)
++.+..+++..++...+| .+.++++. +....+++.+.+.++..+++++.|+++||+|||+++.++.++.+++..+.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 566777788888888888 78888764 33346789999999999999999999999999999999999999997777
Q ss_pred HhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhh
Q 010848 119 AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 198 (499)
Q Consensus 119 ~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~ 198 (499)
.++++.+.+++.|+++|++.+...+....++.|++|+|+|++..+.......+|..+++.++..+.+. .+||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~~~~~~~~~~~ 158 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-FGWRWAFLISA 158 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-CHHCCHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-ccccccccccc
Confidence 77788889999999999999999999999999999999999999999999999999999998877643 35999999999
Q ss_pred HHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccc-hhhhhcchhhHHHH
Q 010848 199 VPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR-YLDVFKSKEIRLAF 276 (499)
Q Consensus 199 ~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 276 (499)
+..++..++. .+++++|+....+.+.++. +.++++..+ ++.+++++.++...
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 212 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESPKESE--------------------------SKKPKPLKPGFKSLFKNPVLWILL 212 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SSTTTT----------------------------HHHCCCH-CTHHHHHHCCHHHH
T ss_pred chhhhhhhhHhhhhhhcccccccccccccc--------------------------cccccccccccccccccchhhhhh
Confidence 8887776642 4455544322111111100 000111112 34455555554222
Q ss_pred HHHHHHHHHHhccCcceehhchHHH-HHHcCCC-CchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH
Q 010848 277 LAGAGLQAFQQFTGINTVMYYSPTI-VQMAGFQ-SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS 354 (499)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~ 354 (499)
.. ..... ........+.|.+ .+..|.+ ..+.+....... ....++.++.+++.||+++|+..........+.
T Consensus 213 ~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (352)
T PF07690_consen 213 IA-FFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFG-IVGIIGSLLAGRLSDRFGRRRRLLIAILLLILG 286 (352)
T ss_dssp HH-HHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh-hhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 21 11111 1122244566776 5667777 455554444433 346777899999999999877665544444443
Q ss_pred HHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHH
Q 010848 355 LVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVA 429 (499)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~ 429 (499)
...+...... ....+. .....+ ..+......+....+..|.+|++.|+++.|+.+..+.+++.++|
T Consensus 287 ~~~~~~~~~~-------~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 287 ALGLLLLPFS-------SSPVWL-IIALFL-IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHCCSHHH-------CHHHHH-HHHHHH-HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------hhHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3333211111 001111 111111 22222223566678889999999999999999999988887764
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=218.24 Aligned_cols=343 Identities=29% Similarity=0.428 Sum_probs=257.6
Q ss_pred HHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH
Q 010848 38 AGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII 117 (499)
Q Consensus 38 ~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~ 117 (499)
..++.+..+++....+...|.+.++++. +....+++.+...++..+++++.|+++||+||||.+.++..+..++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 3456677788888888888888877743 3445678899999999999999999999999999999999999999999
Q ss_pred HHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhh
Q 010848 118 MAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVS 197 (499)
Q Consensus 118 ~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~ 197 (499)
..++++++.+++.|++.|++.+...+....++.|++|+|+|++..+.......+|..+++.++..+.+.. +||+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLFLIL 159 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998887765543 499999998
Q ss_pred hHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHH
Q 010848 198 AVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFL 277 (499)
Q Consensus 198 ~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (499)
+++.++..+...+++ |+.+...+
T Consensus 160 ~~~~~~~~~~~~~~~---------------------------------------------------------~~~~~~~~ 182 (352)
T cd06174 160 AILGLLLALLLLFLL---------------------------------------------------------RLLLLLAL 182 (352)
T ss_pred HHHHHHHHHHHHHHH---------------------------------------------------------HHHHHHHH
Confidence 877766555543332 11111111
Q ss_pred HHHHHHHHHhccCcceehhchHHHHHHc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChH-HHHHhhHHHHHHH
Q 010848 278 AGAGLQAFQQFTGINTVMYYSPTIVQMA-GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK-LALSSLAGVIISL 355 (499)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~~~~~~i~~ 355 (499)
. .+...........+.|.+.++. +.+..+.+.... ....+..++.++.+++.||++||+ .+..+.....++.
T Consensus 183 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (352)
T cd06174 183 A-----FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLS-LFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGL 256 (352)
T ss_pred H-----HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1 1111122233344566666654 666666555544 444557899999999999999998 7766665555554
Q ss_pred HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 356 VLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTV 435 (499)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~ 435 (499)
...... .+ .+.... ..+..........+....+..|..|++.|++..++......++..+++...+.+
T Consensus 257 ~~~~~~----~~-------~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l 324 (352)
T cd06174 257 LLLALA----PS-------LALLLV-ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324 (352)
T ss_pred HHHHHh----cc-------HHHHHH-HHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443321 00 111111 222223333345577778889999999999999999999999999999998888
Q ss_pred HHHcCCchhhHHHHHHHHHHHHHH
Q 010848 436 AELVGTGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 436 ~~~~~~~~~f~~~~~~~~~~~~~~ 459 (499)
.+..+++..+.+.+++.+++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 325 LDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred hcccCcchHHHHHHHHHHHHHHHh
Confidence 888888888888888888776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-25 Score=217.11 Aligned_cols=371 Identities=13% Similarity=0.118 Sum_probs=233.2
Q ss_pred HHHHHHHHHHhhhhhhchhcchhhHHhhhh-hhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGALLYIKD-DFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVV 110 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l 110 (499)
+.+....-..+|..-+ +.++..+.+.+ |++. +....++..+++.+++.++.++.|++.||+|.|+++.++.++
T Consensus 36 l~~s~~~f~~~F~~w~---~~~~l~~~~~~~~~~l---s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 36 LWISVSCLLLAFCVWM---LFSAVTVNLNKIGFNF---TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3333333334444333 34444555544 6764 334568899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-----CchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc-
Q 010848 111 FTAGAIIMAAA-----PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT- 184 (499)
Q Consensus 111 ~~~~~~~~~~a-----~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~- 184 (499)
+.+.+++.+++ +|++.+++.|++.|++ |..++.....+++|+|+|+||++++........|..+++++...+.
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~ 188 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF 188 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999987 8999999999999998 7788999999999999999999999986555555554433322111
Q ss_pred ----C------------CCCchHHHHHhhhHHHHHHHHHHHh-ccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHH
Q 010848 185 ----E------------VPGTWRWMLGVSAVPAIIQFVLMLF-MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHL 247 (499)
Q Consensus 185 ----~------------~~~~Wr~~f~~~~~~~~l~~~~~~~-lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 247 (499)
. ...+||..+++-.++.++..++.++ +++.|. .+
T Consensus 189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~-------------------------- 239 (462)
T PRK15034 189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SR-------------------------- 239 (462)
T ss_pred HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cc--------------------------
Confidence 0 0124888887777666665555443 443321 00
Q ss_pred HHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Q 010848 248 SAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVG 327 (499)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 327 (499)
++....++.+|+|+.|...+. .+..+.++....++.|++.+. .++... .............+.
T Consensus 240 ----------~~~~~~~~vlk~~~~Wllsll-----y~~tFG~fvg~s~~lp~~~~~-~~~~~~-~l~~~~l~~l~~~l~ 302 (462)
T PRK15034 240 ----------ASIADQLPVLQRLHLWLLSLL-----YLATFGSFIGFSAGFAMLAKT-QFPDVN-ILRLAFFGPFIGAIA 302 (462)
T ss_pred ----------cCHHHHHHHhCCCchhHHHHH-----HHHHHHHHHHHHHHHHHHHHH-HcChHH-HHHHHHHHHHHHHHH
Confidence 001123346677766554332 222333444455677877764 232221 122122233446788
Q ss_pred HHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccc-ccccccccccCc
Q 010848 328 TIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG-PVPWTLNSEVYP 406 (499)
Q Consensus 328 ~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p 406 (499)
.+++|+++||+|+|+++..+.....++......... .. . ....+.....+ ...+...|.+ ...+-++.+.||
T Consensus 303 rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--~~-~--~~~~~~~~~~~--~~l~~~~G~gngsvfk~ip~~f~ 375 (462)
T PRK15034 303 RSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP--GT-G--SGNFIAFYAVF--MGLFLTAGLGSGSTFQMIAVIFR 375 (462)
T ss_pred HHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--cc-c--ccHHHHHHHHH--HHHHHHhcccchHHHHhhHHHHh
Confidence 899999999999999988777665555433322221 11 0 01112222222 2222233333 233445666776
Q ss_pred c---------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHHHHHh
Q 010848 407 E---------------------QYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 407 ~---------------------~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
+ +.-+...|+....+.+++++.+..+....+..| +...|+.+.+..++|.++.+.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 376 QITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred hhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4 134566677777777888888877777766654 4567888888888888777654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=224.62 Aligned_cols=358 Identities=14% Similarity=0.168 Sum_probs=230.5
Q ss_pred HHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA 115 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 115 (499)
+...+..++.+++....+...|.++++++. +....++..+.+.+++.+++++.|++.||+||||++..+..++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~---s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 444466788899999999999999999875 34556889999999999999999999999999999999999999999
Q ss_pred HHH---HhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc-CC-----
Q 010848 116 IIM---AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT-EV----- 186 (499)
Q Consensus 116 ~~~---~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~-~~----- 186 (499)
+++ +++++++.++++|+++|+|.|...+....++.|+.|+++|+..++..+..+.+|..+++.++..+. ..
T Consensus 106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~ 185 (438)
T PRK10133 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 875 568999999999999999999999999999999887777776788888888889988887765322 00
Q ss_pred -----------C--------CchHHHHHhhh-HHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHH
Q 010848 187 -----------P--------GTWRWMLGVSA-VPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEID 245 (499)
Q Consensus 187 -----------~--------~~Wr~~f~~~~-~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 245 (499)
. .+||++|+... +..++.++. ...+||.|.. +.+ ++
T Consensus 186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~~-~~------------------- 242 (438)
T PRK10133 186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-DA------------------- 242 (438)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccc-cc-------------------
Confidence 0 14666665433 333232222 2234543210 000 00
Q ss_pred HHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHH-HH-HcCCCCchHHHHHHHHHHHH
Q 010848 246 HLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI-VQ-MAGFQSNQLALLLSLAVAGT 323 (499)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~-~~g~~~~~~~~~~~~~~~~~ 323 (499)
+ +.+.....++++++|.++...+..+.. . ........|.+.+ .+ ..|.++...+.... +...+
T Consensus 243 -------~--~~~~~~~~~~ll~~~~~~~~~l~~~~~-~----~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~-~~~~~ 307 (438)
T PRK10133 243 -------K--QGSFSASLSRLARIRHWRWAVLAQFCY-V----GAQTACWSYLIRYAVEEIPGMTAGFAANYLT-GTMVC 307 (438)
T ss_pred -------c--ccchhhhHHHHHhCchHHHHHHHHHHH-H----HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHHH
Confidence 0 000011233566777655433322111 1 1112222344544 44 46887766665554 44456
Q ss_pred HHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccc
Q 010848 324 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSE 403 (499)
Q Consensus 324 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 403 (499)
..+++++++++.||++||+.+..+.....+.+.+... .. . ... +..+.+ ..+......|..++...|
T Consensus 308 ~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~~-~-----~~~---~~~~~l-~glg~~~i~P~~~s~a~~ 374 (438)
T PRK10133 308 FFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---AG-G-----HVG---LIALTL-CSAFMSIQYPTIFSLGIK 374 (438)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---cC-C-----hHH---HHHHHH-HHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999876665444333322211 11 1 011 111111 222233345677777788
Q ss_pred cCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhhHHHH
Q 010848 404 VYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILA 449 (499)
Q Consensus 404 ~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~f~~~~ 449 (499)
.+|++ .+.+.++.. ++.+++.+++.+...+.+..| .+..|++..
T Consensus 375 ~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~ 419 (438)
T PRK10133 375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_pred ccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 87764 455666664 455667777777777777765 445555433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-25 Score=219.62 Aligned_cols=355 Identities=13% Similarity=0.078 Sum_probs=223.6
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---h-cCchhHHHHHHHH
Q 010848 58 YIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA---A-APDPYVLILGRLL 133 (499)
Q Consensus 58 ~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~---~-a~s~~~li~~R~l 133 (499)
.+.+|++. +....++..+.+.+++.+++++.|+++||+||||++..+..++.++++++. + .++++.+++.|++
T Consensus 38 ~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 114 (402)
T TIGR00897 38 PFLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI 114 (402)
T ss_pred HHHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence 34456643 344568899999999999999999999999999999999999998877653 3 3578889999999
Q ss_pred HHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHH-HHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH-HHhc
Q 010848 134 VGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQ-FLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFM 211 (499)
Q Consensus 134 ~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~-~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~-~~~l 211 (499)
+|++.+...+....++.|++|+|+|+++++........|. ..++.++..+.+.. +|+..+|.......+..++ .++.
T Consensus 115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998888888899999999999999999998888886 57777765554432 4555444433322222222 2233
Q ss_pred cCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCc
Q 010848 212 PESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGI 291 (499)
Q Consensus 212 pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (499)
+|.++-. +++++++ .+ + ....+++++++|+.+...+... .+..+.
T Consensus 194 ~~~~~~~-~~~~~~~-----------------~~--------~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 238 (402)
T TIGR00897 194 KDIFTPQ-HMQTREK-----------------FS--------E----LGKAATILFTNPNVLLGGMVRI-----INTIGL 238 (402)
T ss_pred CCCCCcc-cccCCcc-----------------hh--------h----HHHHHHHHHcChhHHHHHHHHH-----HHHHHH
Confidence 4321100 0000000 00 0 0011234566776554332211 112223
Q ss_pred ceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH-HhhHHHHHHHHHHHHHHhhCCCCCC
Q 010848 292 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWAFISGSSASS 370 (499)
Q Consensus 292 ~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 370 (499)
.....+.|.+.++.|.+..+.+...... ..+..++.+..|++.||++||+... .+.....++...+........ .
T Consensus 239 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~-~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~-- 314 (402)
T TIGR00897 239 FGFAVFLPMFVAELGFSTSEWLQIWGTF-FFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFG-H-- 314 (402)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccC-C--
Confidence 3445677888888888876655554443 3457899999999999999887653 222222222222211111000 0
Q ss_pred CchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHH
Q 010848 371 SGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG 450 (499)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~ 450 (499)
. . +.......++. ....+..+. .....|..| +.|+++.|+.+....+++.+++.+...+.+..|+...+++.++
T Consensus 315 ~--~-~~~~~~~~~~G-~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~ 388 (402)
T TIGR00897 315 S--F-AVALIIAIALG-IFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAA 388 (402)
T ss_pred c--H-HHHHHHHHHHH-HHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 0 1 11111111111 111112232 234456545 5899999999999999999999998888888888888888888
Q ss_pred HHHHHHHHHHH
Q 010848 451 IAVLAVVFVIL 461 (499)
Q Consensus 451 ~~~~~~~~~~~ 461 (499)
+.+++.+..++
T Consensus 389 ~~~i~~~~~~~ 399 (402)
T TIGR00897 389 LYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHH
Confidence 88777665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=220.12 Aligned_cols=368 Identities=15% Similarity=0.070 Sum_probs=232.2
Q ss_pred HHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q 010848 40 IGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA 119 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~ 119 (499)
++.++..+...++....+.+.+|++. +....+++.+.+.+++.+.++++|+++||+|||++++++.+++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 45666666444445555555666653 344568899999999999999999999999999999999999999998888
Q ss_pred hcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhH
Q 010848 120 AAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAV 199 (499)
Q Consensus 120 ~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~ 199 (499)
++++. ++.|+++|++.|...|...+++.|++|+|+|+++++........|.++|+.+++.+.+. .|+..+++.+.
T Consensus 87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~ 161 (393)
T PRK11195 87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCAL 161 (393)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 77664 78899999999999999999999999999999999999999999999999998877653 37777777665
Q ss_pred HHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHH
Q 010848 200 PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAG 279 (499)
Q Consensus 200 ~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (499)
..++..+....+||+|+....++++++ .. ..+. .+ ..+.++++|..+......
T Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~-------------~~~~----~~--------~~~~l~~~~~~~~~~~~~ 214 (393)
T PRK11195 162 IYLLAALFNLFIPRLGARRPGQSWNPI--AL-------------LRDF----FH--------ACRVLWRDKLGRFSLAGT 214 (393)
T ss_pred HHHHHHHHHhcCCCCcccccccCCCHH--HH-------------HHHH----HH--------HHHHHHhCchhHHHHHHH
Confidence 555555555678887642111110000 00 0000 00 112445555544433222
Q ss_pred HHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHH
Q 010848 280 AGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL 358 (499)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~ 358 (499)
...... .....+..|.+.+ ..|.++.+.+.... ....+..++++..+++.||.++|+....+... .+....+
T Consensus 215 ~~~~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~-~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~ 287 (393)
T PRK11195 215 TLFWGA-----GATLRFLVLAWAPVALGITLNQPAYLQA-VVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLM 287 (393)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHH-HHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHH
Confidence 111111 1122233444444 46777777666554 44445788999999999998888766554322 2111111
Q ss_pred HHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 359 SWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY-RGICGGMSATVNWISNLIVAQTFLTVAE 437 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~l~~~i~~~~~~~~~~ 437 (499)
. . .. ..+.......+...... ...+...+...|..|++. ++++.++.+..++++..++......+ +
T Consensus 288 ~--~--~~-------~~~~~~~~~~~~G~~~g-~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~ 354 (393)
T PRK11195 288 A--L--QH-------SLLPAYPLLILIGALGG-FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-V 354 (393)
T ss_pred H--H--Hh-------HHHHHHHHHHHHHHhhh-hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-H
Confidence 1 1 00 01111111111111111 112223445567666655 79999999999988887777666543 5
Q ss_pred HcCCchhhHHHHHHHHHHHHHHHHh
Q 010848 438 LVGTGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 438 ~~~~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
..+....+.+.+...+.++.+.+.|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 355 KLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6677666666555555555555444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-25 Score=225.28 Aligned_cols=378 Identities=15% Similarity=0.087 Sum_probs=241.3
Q ss_pred HHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHH-HHHHHHHHH
Q 010848 39 GIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY-----GRKKA-TLLADVVFT 112 (499)
Q Consensus 39 ~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~-----Grr~~-l~~~~~l~~ 112 (499)
.+.++..|+....++..+|...++.+. +....+.. +.....+ ++.+++|+++||+ |||+. +..+.+...
T Consensus 18 ~~l~~~~gl~~~~~~~~l~~~l~~~g~---~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 18 LILGFASGLPLALTSGTLQAWMTVENI---DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 345677788888888888877665532 22222322 2233333 6889999999999 99986 557777676
Q ss_pred HHHHHHHhc---CchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCc
Q 010848 113 AGAIIMAAA---PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT 189 (499)
Q Consensus 113 ~~~~~~~~a---~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 189 (499)
++..++++. ++++.+.+.|++.|++.+...+...+++.|++|+|+|++..+....+..+|.++++.++..+.+...+
T Consensus 93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 777777775 36778899999999999999999999999999999999999999999999999998877766653346
Q ss_pred hHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcc
Q 010848 190 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKS 269 (499)
Q Consensus 190 Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (499)
||..|++.++..++..+..++.||+++.. .++++. ++ +...+.++.+++
T Consensus 173 Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~------------------------~~----~~~~~l~~~~~~ 221 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTL------------------------EQ----AVVAPLRDFFGR 221 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccch------------------------hh----hHHHHHHHHHcC
Confidence 99999998887777666666678875421 000000 00 000123344555
Q ss_pred hhhHHHHHHHHHHHHHHhccCcceeh-hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhh
Q 010848 270 KEIRLAFLAGAGLQAFQQFTGINTVM-YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 348 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 348 (499)
++.+.......... . +..... +..|++.+..|++..+.+.........+..++.+++|+++||+++|+.+..+.
T Consensus 222 ~~~~~~ll~~~l~~-~----~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~ 296 (491)
T PRK11010 222 NNAWLILLLIVLYK-L----GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFG 296 (491)
T ss_pred cCHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 54443322221111 1 111112 23444456688887777765544444457899999999999999988765544
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHH
Q 010848 349 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 428 (499)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~ 428 (499)
....+..+.......... .. +.......+....++.+. +..+++..+..|++.+++..++.++...++..+.
T Consensus 297 ~l~~l~~l~~~~l~~~~~-----~~--~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~ 368 (491)
T PRK11010 297 ILQGVSNAGYWLLSITDK-----NL--YSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYV 368 (491)
T ss_pred HHHHHHHHHHHHHHhccc-----cH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 333333322221111110 11 111111111111111111 2335677788899999999999999888888888
Q ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccC
Q 010848 429 AQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPET 466 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet 466 (499)
+...+.+.+..||...|.+.+++++.+.+...+ .+++
T Consensus 369 ~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 369 GPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 778888888888887787777777777655544 3444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=216.90 Aligned_cols=325 Identities=21% Similarity=0.275 Sum_probs=212.9
Q ss_pred chhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHH
Q 010848 48 DTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVL 127 (499)
Q Consensus 48 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~l 127 (499)
...++.+.+|.+.+++|. +....++..+++.++..++.+++|+++||+|||+++..+.++..++...+.++++++.+
T Consensus 6 ~~~~~~p~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 6 AIDMYLPALPVIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred HHHHHhccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 344566788888888764 33445788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH
Q 010848 128 ILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 128 i~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~ 207 (499)
++.|+++|++.+...+....++.|++|+|+|++..+........|..+++.++..+.+.. +||+.|++.++..++..+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888999999988876665433 5999999888776665444
Q ss_pred -HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHH
Q 010848 208 -MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ 286 (499)
Q Consensus 208 -~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (499)
.+++||+++.. ++++ .+.+ +. ..+.++.+++++.+...+... .
T Consensus 162 ~~~~~~~~~~~~----~~~~-----------~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~-----~ 205 (377)
T PRK11102 162 VFFFIPETLPKE----RRQP-----------FHLR-----------TT-----IRNFASLFRHKRVLGYMLASG-----F 205 (377)
T ss_pred HHHhCCccCccc----ccCC-----------CChH-----------HH-----HHHHHHHHcChHHHHHHHHHH-----H
Confidence 45677764310 0000 0000 00 011234555655443322211 1
Q ss_pred hccCcceehhchHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhC
Q 010848 287 QFTGINTVMYYSPTI-VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG 365 (499)
Q Consensus 287 ~~~~~~~~~~~~p~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~ 365 (499)
.+.+.+....+.|.+ .+..|.++.+.+.... ...++..++.++++++.||+|||+.+..+.....+..+.+.......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (377)
T PRK11102 206 SFAGMFSFLTAGPFVYIELNGVSPQNFGYYFA-LNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD 284 (377)
T ss_pred HHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111222223344544 4556887766665554 44455788999999999999999987766554333322222111111
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHH
Q 010848 366 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 422 (499)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 422 (499)
. ..+........+..... ........+..|..| +.|+++.++.+....
T Consensus 285 ~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 332 (377)
T PRK11102 285 L-------GFWALVVGVAAFVGCVS-MISSNAMAVILDEFP-HMAGTASSLAGTLRF 332 (377)
T ss_pred h-------hHHHHHHHHHHHHHHHH-HhhHHHHHHHhcccc-ccchHHHHHHHHHHH
Confidence 0 01111222222221111 112222344567666 678888887766544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-23 Score=209.76 Aligned_cols=388 Identities=17% Similarity=0.227 Sum_probs=218.2
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH
Q 010848 25 YFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKAT 104 (499)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l 104 (499)
+.++++.+......++......+.....+..+++|..|++..++..| +.+...++..++.++.|+++|.||||+.+
T Consensus 36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w----~~~~~~l~~av~~~~~G~LSDlfGRr~~~ 111 (599)
T PF06609_consen 36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSW----FSTAWTLASAVSFPFVGRLSDLFGRRYFF 111 (599)
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchH----HHHHHHHHHHHHHHhhHHHHHHhcchHHH
Confidence 34455554444444444443334444456678889999987655544 77889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc
Q 010848 105 LLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 184 (499)
Q Consensus 105 ~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~ 184 (499)
+.+.++..+|++.++.++|...++++-.+.|+|.|.... ....++|..|.|+|+................++.++-.+.
T Consensus 112 i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 112 IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 999999999999999999999999999999999888775 4566999999999987666555444444444555554443
Q ss_pred CCCCchHHHHHhhhHHHHHHHHHHHh--ccCChhHHh-hcCCHHHHHHHHHHh-------------hC----hh-----h
Q 010848 185 EVPGTWRWMLGVSAVPAIIQFVLMLF--MPESPRWLF-MKSDKEKAILVLSKI-------------YD----IA-----R 239 (499)
Q Consensus 185 ~~~~~Wr~~f~~~~~~~~l~~~~~~~--lpesp~~l~-~~~~~~~a~~~~~~~-------------~~----~~-----~ 239 (499)
. ..+|||.|++.++...+.++..++ .|.+.+.+. ++..+.+..+.+..+ .+ .. .
T Consensus 191 ~-~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~ 269 (599)
T PF06609_consen 191 A-HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWK 269 (599)
T ss_pred c-CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 3 347999999998877665555433 343322111 111111111111111 00 00 0
Q ss_pred HHHHHH-------HHHH-HHHHHHh-hhcccchhhhhcchhhHHHHHHHHHHHHHHhccCccee-hhchHHHHHHcCCCC
Q 010848 240 LEDEID-------HLSA-AAEEELR-KKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTV-MYYSPTIVQMAGFQS 309 (499)
Q Consensus 240 ~~~~~~-------~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~~~ 309 (499)
....+. .+.. ...|... .+++.-..++|++++.....+....+... .++.. .+|.......++.+.
T Consensus 270 Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~----~~~s~~~l~p~~~~~vf~~d~ 345 (599)
T PF06609_consen 270 SAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGM----NFFSVNILWPQQVVNVFGSDP 345 (599)
T ss_pred CccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccCCC
Confidence 000000 0000 1122221 23344456788874432222211111111 11222 233333333444433
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH-HHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHH
Q 010848 310 N--QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA-LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYI 386 (499)
Q Consensus 310 ~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (499)
. ....+.+.+...+...+.++.+.+..+++|-|.. +.+...+.+...++.. ...+ +.........+.++
T Consensus 346 ~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~---~~~~-n~~~~i~~~~l~g~---- 417 (599)
T PF06609_consen 346 ISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA---VRPD-NKNAAIAFLVLAGF---- 417 (599)
T ss_pred cccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH---ccCC-CcchHHHHHHHHHH----
Confidence 2 1122334444445677788888999988875544 3444333333333321 1211 11111212122111
Q ss_pred HHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 010848 387 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF 432 (499)
Q Consensus 387 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~ 432 (499)
...+.........+-..|++.-+++.|+..+...+++.++..++
T Consensus 418 --giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 418 --GIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred --hHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11112223334555667899999999999888888777665544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=213.39 Aligned_cols=345 Identities=13% Similarity=0.119 Sum_probs=230.6
Q ss_pred HHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA 115 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 115 (499)
+.+++..+..|++.++.++.+|.++++++. +....+++.+.+.+++.+++++.|++.||+|||+++.++.+++++++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 344567888899999999999999999975 34456889999999999999999999999999999999999999999
Q ss_pred HHHHh---cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC------
Q 010848 116 IIMAA---APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV------ 186 (499)
Q Consensus 116 ~~~~~---a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~------ 186 (499)
++... .++++.+++.|++.|+|.|...+....++.+..|+|+|++..+..+....+|..+++.++..+...
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 88543 468999999999999999999999999999999999999999998889999999988876654211
Q ss_pred -------------------CCchHHHHHhhhHHHHHHHHHHHh--ccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHH
Q 010848 187 -------------------PGTWRWMLGVSAVPAIIQFVLMLF--MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEID 245 (499)
Q Consensus 187 -------------------~~~Wr~~f~~~~~~~~l~~~~~~~--lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 245 (499)
..+||++|++.+.+.++..++..+ +||.++ ++ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~------------------- 217 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK------------------- 217 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc-------------------
Confidence 124999998887766654444322 343211 00 00
Q ss_pred HHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcC--CCCchHHHHHHHHHHHH
Q 010848 246 HLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG--FQSNQLALLLSLAVAGT 323 (499)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g--~~~~~~~~~~~~~~~~~ 323 (499)
++ +.....++++++|+++...+..+.. ...+ .....+.+.+.++.+ .+....+....... ..
T Consensus 218 -------~~---~~~~~~~~~~~~~~~~~~~l~~f~y-vg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~-~~ 281 (410)
T TIGR00885 218 -------QI---SFSASLSRLARIRHYREGVIAQFFY-VGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAM-VI 281 (410)
T ss_pred -------cc---cchhhHHHHHhChhHHHHHHHHHHH-HHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHH-HH
Confidence 00 0000122445666655533332221 1111 122345566655433 22222232333333 45
Q ss_pred HHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccc
Q 010848 324 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSE 403 (499)
Q Consensus 324 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 403 (499)
..+|.++++++.||+++|+.+........+..++... .. . ... ...+. ...++...+.|..++...+
T Consensus 282 ~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~---~~-~-----~~~---~~~l~-~~glf~s~~fp~i~sl~~~ 348 (410)
T TIGR00885 282 FFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF---AG-G-----HVG---LYCLT-LCSAFMSLMFPTIYGIALK 348 (410)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---cC-C-----hHH---HHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999998876655444444333322 11 0 011 11111 1223333445777888888
Q ss_pred cCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010848 404 VYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV 439 (499)
Q Consensus 404 ~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~ 439 (499)
..+++.+..+.++..+. +++.+.+...+.+.|..
T Consensus 349 ~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 349 GLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred hhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 88887665455544443 78888888888888853
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=215.14 Aligned_cols=343 Identities=16% Similarity=0.173 Sum_probs=209.4
Q ss_pred HhhhhhhchhcchhhHHh-hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q 010848 41 GGLLFGYDTGVISGALLY-IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA 119 (499)
Q Consensus 41 ~~~~~g~~~~~i~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~ 119 (499)
+.+....+....++.+|. +++++|. +....+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 9 GFFLSFSVWFAFSPLAVQMIKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 334444455567777884 8888865 334457899999999999999999999999999999999999999999999
Q ss_pred hcC-chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC---------CCCc
Q 010848 120 AAP-DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE---------VPGT 189 (499)
Q Consensus 120 ~a~-s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~---------~~~~ 189 (499)
+++ +++.+++.|+++|++.+. .+....+++|++|+++|++..+........|..+++.++..+.. ...+
T Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~ 164 (366)
T TIGR00886 86 LAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA 164 (366)
T ss_pred HHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999 999999999999999664 55678899999999999999998876666666666555433321 1236
Q ss_pred hHHHHHh-hhHHHH-HHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhh
Q 010848 190 WRWMLGV-SAVPAI-IQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF 267 (499)
Q Consensus 190 Wr~~f~~-~~~~~~-l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (499)
||+.|++ .++... +.++...+.+|+|+.. +++++... ... ... .+ ++......+.+
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~-~~~-------~~----~~~~~~~~~~~ 222 (366)
T TIGR00886 165 WGWAFVIVPAGILLLPALLIFFVGADTPPGK---PATGKLSF-------KGA-RWS-------VG----TGALGDQLKVF 222 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcccCCccc---ccchhccc-------ccc-ccc-------cc----chhHHHHHHHH
Confidence 9999944 344333 3333445567766421 11000000 000 000 00 00001233456
Q ss_pred cchhhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Q 010848 268 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS 346 (499)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 346 (499)
++|+.+...+..... .........+.|.+++ ..|.+..+.+.+... ......++.++++++.||+|||+....
T Consensus 223 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~r~g~~~~~~~ 296 (366)
T TIGR00886 223 RDRHTWILALLYSVT-----FGSFLGVSSIFAMFFKDQFGLSKVTAGAYASL-GGLLGSLARPLGGAISDRLGGARKLLM 296 (366)
T ss_pred hccchhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHhhccchHHHhhccchhHHH
Confidence 666554433321111 1112233345666665 567776666544444 344568899999999999999887665
Q ss_pred hhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHH
Q 010848 347 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 424 (499)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~ 424 (499)
+......+..++.... .... ..+.......+.......+ .+..++..+|.+| +.++++.|+..+.+.++
T Consensus 297 ~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 297 SFLGVAMGAFLVVLGL--VSPL-----SLAVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHhcC--CCcc-----hHHHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 5544444433332211 1000 0111112222222222222 2445677778887 57888888877766543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=206.69 Aligned_cols=333 Identities=15% Similarity=0.125 Sum_probs=215.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 68 QSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 68 ~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
.+....++..+...++..+.++++|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++.+...+...+
T Consensus 43 ~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~ 122 (400)
T PRK11646 43 WAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTA 122 (400)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899989999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred HHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHH
Q 010848 148 YIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEK 226 (499)
Q Consensus 148 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~ 226 (499)
++.|++|+|+|++..+.......+|..+++.++..+.. .+||+.|++.++..++..++ .++.||.+. ++.++
T Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~--~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~ 195 (400)
T PRK11646 123 LVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ--YDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----STVRT 195 (400)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cccch
Confidence 99999999999999999999999999999988877663 36999999988766654433 344555311 00000
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcC
Q 010848 227 AILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG 306 (499)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 306 (499)
+ ....+++++++|++.......... ... ......+.|.+.++.+
T Consensus 196 --------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~p~~~~~~~ 239 (400)
T PRK11646 196 --------------------------P-----VREGMTRVLRDKRFVTYVLTLTGY-YML----AVQVMLMLPIMVNDIA 239 (400)
T ss_pred --------------------------h-----hHHHHHHHHcCchHHHHHHHHHHH-HHH----HHHHHHhhhhhHHhhc
Confidence 0 000123445555544322221111 110 1112345688777766
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHh-hccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHH
Q 010848 307 FQSNQLALLLSLAVAGTNAVGTIVGIYLI-DHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY 385 (499)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (499)
.++...+........+ ...+....+++. ||++.++....+.....++..++... . + . +.......++
T Consensus 240 ~~~~~~g~l~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---~-~------~-~~~~~~~~l~ 307 (400)
T PRK11646 240 GSPSAVKWMYAIEACL-SLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---S-N------L-QQLFTLICLF 307 (400)
T ss_pred CCchHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---h-h------H-HHHHHHHHHH
Confidence 6666666555443333 333333334555 45665555544444434333332211 1 0 1 1111111111
Q ss_pred HHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CchhhHHHHHHHHHHH
Q 010848 386 IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG----TGATFLILAGIAVLAV 456 (499)
Q Consensus 386 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~----~~~~f~~~~~~~~~~~ 456 (499)
..... ...+...++..|..|++.|+++.|+.+....++..+++...+.+.+..+ ....+...+...++..
T Consensus 308 ~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 308 YIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 11111 2234445777899999999999999999888998888888888777642 2334444444444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-23 Score=205.73 Aligned_cols=334 Identities=16% Similarity=0.160 Sum_probs=212.4
Q ss_pred hchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhH
Q 010848 47 YDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYV 126 (499)
Q Consensus 47 ~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~ 126 (499)
+..+...+.+|.+.++++. +....+++.+.+.+++.++++++|+++||+|||+++.++..+..++.+.+.++++++.
T Consensus 22 ~~~~~~~p~~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (394)
T PRK11652 22 MAQTIYVPAIADMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTV 98 (394)
T ss_pred HHHHHHhccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3445566678888888865 3344678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHH
Q 010848 127 LILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 206 (499)
Q Consensus 127 li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~ 206 (499)
+++.|+++|++.+...+....+..|..++++|++..+....+...|..+++.++..+.+. .+||+.|++.++..++..+
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-FGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH
Confidence 999999999999988888889999999999999998888888888888888887766543 3699999998776655443
Q ss_pred -HHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHH
Q 010848 207 -LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAF 285 (499)
Q Consensus 207 -~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (499)
..++.||+++.. +++++ ....+++.+++|+.+.........
T Consensus 178 ~~~~~~~~~~~~~---~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~--- 219 (394)
T PRK11652 178 SMARWMPETRPAD---ARRTR--------------------------------VLASYRTLLSNRRFNCYLLMLIGT--- 219 (394)
T ss_pred HHHHhCCccCccc---cchhH--------------------------------HHHHHHHHHcChHHHHHHHHHHHH---
Confidence 345678865310 00000 001122344555544322221111
Q ss_pred HhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhh
Q 010848 286 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 364 (499)
Q Consensus 286 ~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~ 364 (499)
+.+......+.|.++++ .|.+....+..... ...+..+++.+.+++.||.+++... ......+....+......
T Consensus 220 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 294 (394)
T PRK11652 220 --LAGIAVFEACSGVLMGAVLGLSSMTVSILFIL-PIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF 294 (394)
T ss_pred --HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 11112222334555554 67776665554433 3344577778888888888733222 222222222221111111
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 365 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTV 435 (499)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~ 435 (499)
... ..+.......+...... ...+....+..|.+| +.++++.++.+....++..+++.....+
T Consensus 295 ~~~------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 295 GVM------NVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred ccc------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 100 01111121111111111 223455566678777 4688888888888888877776655443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=236.88 Aligned_cols=367 Identities=14% Similarity=0.096 Sum_probs=226.9
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH---HHhcCchhHHHHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII---MAAAPDPYVLILGR 131 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~---~~~a~s~~~li~~R 131 (499)
..+.+..+++.. .+....+++.+++.++++++++++|+++||+|||++++++.++..+++++ +..+++++.+++.|
T Consensus 32 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 110 (1146)
T PRK08633 32 IQNTLIKAYDGS-EQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT 110 (1146)
T ss_pred HHHHHHHHcCcc-cHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 334455555432 23345688899999999999999999999999999999988766555544 44567899999999
Q ss_pred HHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC--------CCchHHHHHhhhH-HHH
Q 010848 132 LLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV--------PGTWRWMLGVSAV-PAI 202 (499)
Q Consensus 132 ~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~--------~~~Wr~~f~~~~~-~~~ 202 (499)
+++|++.|...+...++++|++|+++|+++++.......+|.++++.++..+... ..+|++.+.+..+ ..+
T Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1146)
T PRK08633 111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAV 190 (1146)
T ss_pred HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988776543 2235555444433 333
Q ss_pred HHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHH
Q 010848 203 IQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGL 282 (499)
Q Consensus 203 l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (499)
+.+++.+.+||+|.....+.+.++. . ...+ ....+..+++++.++...+.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~------------~~~~----~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 191 LGLIFAYRLPKVPAAAPEVFDKKKY----------L------------FPKL----LWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred HHHHHHhcCcCCCCCCccccccccc----------c------------cHHH----HHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444455678887542211100000 0 0000 001233455666555443322221
Q ss_pred HHHHhccCcceehhchHHHH-HHcCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHH
Q 010848 283 QAFQQFTGINTVMYYSPTIV-QMAGFQSN-QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW 360 (499)
Q Consensus 283 ~~~~~~~~~~~~~~~~p~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~ 360 (499)
... ......+.|.++ +..|.+.. ..+.+... ..++.+++.++++++.||.++++.+..+.++..++.+++..
T Consensus 245 ~~~-----~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~-~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 318 (1146)
T PRK08633 245 WFI-----SQLAQANFPAYAKEVLGLDNTFQVQYLLAA-SAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT 318 (1146)
T ss_pred HHH-----HHHHHHhhHHHHHHHhCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH
Confidence 111 112223445554 45688766 55555444 44457889999999999999888776655555444443332
Q ss_pred HHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Q 010848 361 AFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-V 439 (499)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~-~ 439 (499)
.. + . +..++...++ .+......+...++..+..|++.|+++.|+.+.+..++..+++.....+... .
T Consensus 319 ~~----~------~-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~ 386 (1146)
T PRK08633 319 AP----S------L-ASVLVLFFLF-GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGL 386 (1146)
T ss_pred hh----h------H-HHHHHHHHHH-HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 0 0 1111111111 1222222344567778999999999999999998888775554443333221 1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhcccC
Q 010848 440 GTGATFLILAGIAVLAVVFVILFVPET 466 (499)
Q Consensus 440 ~~~~~f~~~~~~~~~~~~~~~~~~pet 466 (499)
++...+++.+.+.++..++.....|++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1146)
T PRK08633 387 SPAGLFYLIALVTLIGTLYTLLLLPDS 413 (1146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 222345555555444444444555554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=213.83 Aligned_cols=284 Identities=21% Similarity=0.231 Sum_probs=203.3
Q ss_pred HHHHHHHHHHhhhhhhchhcchhh-HHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH
Q 010848 32 LGLTVIAGIGGLLFGYDTGVISGA-LLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVV 110 (499)
Q Consensus 32 ~~~~~~~~l~~~~~g~~~~~i~~~-~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l 110 (499)
+.+....++..+..-.|...++.+ +.-+.+|.+...+ ..+.+.+++++|+++|.++++.+.||++-.+.+....+.
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~---~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~ 120 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGN---QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGIL 120 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhh---hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHH
Confidence 444445566777778887655433 2223455544222 347789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC-----
Q 010848 111 FTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE----- 185 (499)
Q Consensus 111 ~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~----- 185 (499)
+++.++++....|++.+++.|++.|+..++.+|....+++.|+.+++||..++.+.....+|+++|.+++..+..
T Consensus 121 w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~ 200 (495)
T KOG2533|consen 121 WGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG 200 (495)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence 999998988899999999999999999999999999999999999999999999999999999999988877421
Q ss_pred CCCchHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHH-Hhhhcccch
Q 010848 186 VPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEE-LRKKKTVRY 263 (499)
Q Consensus 186 ~~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 263 (499)
...+|||.|++.+++.++..++ .+++|+.|.--.-..++|+ +...+ ..++..... .++.+...+
T Consensus 201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek-~~~~~-------------~~~~~~~~~~~~~~~~~~~ 266 (495)
T KOG2533|consen 201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK-ELVVE-------------RLRESPSGGIENKFKWKGF 266 (495)
T ss_pred CcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH-HHHHH-------------HHHhccCCCcccccCHHHH
Confidence 2347999999999888776555 4678999972101111111 00000 000000000 000223456
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010848 264 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF 338 (499)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 338 (499)
++.++++..+...+. .+......+.+.+|+|.+++. .|++..+ +..++++..++++++.+++|+++||+
T Consensus 267 ~~a~~dp~vw~~~l~-----~~~~~lv~~~~~~~lpl~l~~~~~~s~~~-a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 267 KEALKDPGVWPFSLC-----YFFLKLVNYGFSYWLPLYLKSNGGYSELQ-ANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHHhchhHHHHHHH-----HHHHhhccccHHHHHHHHHHcCCCcChHH-hccccchHHhhhHHHHHHHHHHHHHH
Confidence 678888877665443 222333456678899999987 3465544 44556677777899999999999994
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=204.72 Aligned_cols=331 Identities=16% Similarity=0.236 Sum_probs=217.7
Q ss_pred hcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 010848 50 GVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLIL 129 (499)
Q Consensus 50 ~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~ 129 (499)
..+++.+|.+.+|++. +....+++.+.+.+++.+++++.|+++||+||||++.++..+..++.+.+ .+++++.+++
T Consensus 17 ~~~~~~lp~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 17 TSVGPLLPQIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred ccCcccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 4567788999999875 33446889999999999999999999999999999999999988888887 7889999999
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCC-chHHHHHhhhHHHHHHHHHH
Q 010848 130 GRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG-TWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 130 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~-~Wr~~f~~~~~~~~l~~~~~ 208 (499)
.|++.|++.+...+....++.|++| ++|+++.+........|..+++.++..+.+..+ +||+.|...+...++.. .
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~ 169 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--L 169 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--H
Confidence 9999999999988888889999996 579999999888888888888877665544332 49999887665443322 2
Q ss_pred HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhc
Q 010848 209 LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQF 288 (499)
Q Consensus 209 ~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 288 (499)
.++||+++. .+. + +.++....++.+++|..+...+.... ..
T Consensus 170 ~~~~~~~~~----~~~-----------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 210 (355)
T TIGR00896 170 AWIPQVRRR----VAA-----------------------------N-QTTTRLTPVRIWRSPLAWQVTVFFGL-----QS 210 (355)
T ss_pred HHhhhhccc----cCC-----------------------------C-CCCCCCCCchhhcCHhHHHHHHHHHH-----HH
Confidence 234443210 000 0 00001123456666665443222111 11
Q ss_pred cCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHHHHHHHHHhhCCC
Q 010848 289 TGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSS 367 (499)
Q Consensus 289 ~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 367 (499)
........+.|.++++.|.+....+...... ..+..++.++.|++.||+ +||+....+.....++...+.+.. .+
T Consensus 211 ~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~-~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 286 (355)
T TIGR00896 211 GLYYSLIGWLPAILISHGASAATAGSLLALM-QLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP---MH 286 (355)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh---hh
Confidence 1122334567888888888776666655554 445789999999999999 455555554444444443332211 00
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhcccccccccccc-ccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010848 368 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS-EVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 440 (499)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ 440 (499)
.. +.. ..++ .+......+...+... +..+++.++...++......+++.+++.....+.|..+
T Consensus 287 -----~~-~~~---~~l~-g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 287 -----GL-WAW---ALVL-GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -----HH-HHH---HHHH-HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 111 1111 1111122233333333 33456677888888888888888888888888877665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=196.75 Aligned_cols=379 Identities=20% Similarity=0.248 Sum_probs=252.1
Q ss_pred hHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 010848 29 MYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108 (499)
Q Consensus 29 ~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~ 108 (499)
++.+.+.+.+...+|..-+-. +...+.+.+|++. +..+.++++++..+...+--++.|++.||||.|++..++.
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~---s~l~~~i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~ 86 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLF---SPLGVFIKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM 86 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHhhhccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH
Confidence 344455554444555544333 3444556678865 3344678899999988999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCchh---HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC
Q 010848 109 VVFTAGAIIMAAAPDPY---VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE 185 (499)
Q Consensus 109 ~l~~~~~~~~~~a~s~~---~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~ 185 (499)
++..+-++..+++.+.+ ++++.+++.|++ |+..++...++++++|+|++|.+++++. ..+.|..+..+.+..+..
T Consensus 87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~ 164 (417)
T COG2223 87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV 164 (417)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence 99999999999887665 999999999997 6677889999999999999999999988 666666665555444433
Q ss_pred CCC--chHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccc
Q 010848 186 VPG--TWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR 262 (499)
Q Consensus 186 ~~~--~Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (499)
..+ .||..-.+-.++.++..+. ++.+.|.|.....+++. .+.+
T Consensus 165 ~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~----------------------------------~~~~ 210 (417)
T COG2223 165 AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ----------------------------------LPAQ 210 (417)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc----------------------------------chhH
Confidence 222 2998888777766664444 45566665431111000 0012
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 010848 263 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK 341 (499)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 341 (499)
.+.++++++.|...+. ++..+.++.....++|.+++ +++.++...+.+ .......+.+...++|+++||+|.+
T Consensus 211 ~~~v~~~~~~W~lsll-----Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~-a~~f~~~g~l~Rp~GG~LsDR~Gg~ 284 (417)
T COG2223 211 LKAVFSNKDTWLLSLL-----YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLI-AFLFPLIGALARPLGGWLSDRIGGR 284 (417)
T ss_pred HHHHhcCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHH-HHHHHHHHHHHHhccchhhhhccch
Confidence 3345556666654332 33334445556667787775 678877665544 3444445688899999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHH
Q 010848 342 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN 421 (499)
Q Consensus 342 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~ 421 (499)
|.....+..+.++...+..... ..... ...+...........+...|. ...+-++...||.+ -+...|+...++
T Consensus 285 rv~~~~f~~~~~~~~~l~~~~~--~~~~~--~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~~~-~G~v~G~vga~G 358 (417)
T COG2223 285 RVTLAVFVGMALAAALLSLFLT--GFGHG--GSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFPKE-TGAVTGIVGAIG 358 (417)
T ss_pred hHHHHHHHHHHHHHHHHHcccc--ccccC--cchHHHHHHHHHHHHHhccCc-chheeechHHHHhh-hhHHHHHHHHhc
Confidence 9988877777776665543221 11110 111112221222222233333 34456667777764 456778888888
Q ss_pred HHHHHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHHHHH
Q 010848 422 WISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVIL 461 (499)
Q Consensus 422 ~l~~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~ 461 (499)
.++++..+..+....+..| +...|+++..+.+++.+..+.
T Consensus 359 ~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 359 GLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred cccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877 567788888888888776554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-22 Score=199.03 Aligned_cols=362 Identities=14% Similarity=0.145 Sum_probs=215.6
Q ss_pred hhhhhhchhcchhhHHh-hhhhhccccccchhHHHHHHH-HHHHHHHHHHhhhhhhhhhchhHHH-HHHHHHHHHHHHHH
Q 010848 42 GLLFGYDTGVISGALLY-IKDDFEAVNQSSFLQETIVSM-ALVGAIVGAASGGWINDAYGRKKAT-LLADVVFTAGAIIM 118 (499)
Q Consensus 42 ~~~~g~~~~~i~~~~~~-i~~~~~~~~~~~~~~~~~~s~-~~lg~~ig~~~~g~l~Dr~Grr~~l-~~~~~l~~~~~~~~ 118 (499)
.++.++....+.+.+|. +.+|++. +....++..+. ...++..+.+.+++ +||+||||.+ ..+.++.+++..+.
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~ 99 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLF 99 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHH
Confidence 44444444444554443 5666653 33445777665 45577777777777 9999999875 45566666777788
Q ss_pred HhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCccc--chhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHh
Q 010848 119 AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG--GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGV 196 (499)
Q Consensus 119 ~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg--~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~ 196 (499)
+++++++.+++.+.+.|...+...+....++.|+.|+++|. ...+.......+|..+++.++..+.+.. +||+.|++
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~ 178 (393)
T PRK15011 100 AWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLS 178 (393)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHH
Confidence 89999988776665555545577888888889988776663 3446677778889999998887776533 69999999
Q ss_pred hhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcc-hhhHH
Q 010848 197 SAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKS-KEIRL 274 (499)
Q Consensus 197 ~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 274 (499)
.++..++..+. .+++||+|+. +++.++ +.+ ..+ ++ +..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------------~~~-~~~---------~~~~~~~~ 220 (393)
T PRK15011 179 AAVAFIVCGVMVWLFLPSMRKE---LPLATG-------------------------TLE-APR---------RNRRDTLL 220 (393)
T ss_pred HHHHHHHHHHHHHhhcCccCCC---Cccccc-------------------------ccc-ccc---------cccccHHH
Confidence 88766665444 4457886531 000000 000 000 01 11111
Q ss_pred HHHHHHHHHHHHhccCcceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHH
Q 010848 275 AFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVII 353 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i 353 (499)
........ +........+.|.++ +..+.++.+.+.+..... +...++.+++|+++||++||+....+.....+
T Consensus 221 ~~~~~~~~-----~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~-~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 221 LFVICTLM-----WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAA-GLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVC 294 (393)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 11111111 111112223566666 456777666665554433 44678889999999999999876654433332
Q ss_pred HHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010848 354 SLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 433 (499)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~ 433 (499)
...... . .. + . +..+....+.....+. ..+....+..|.+|++ |+++.++.+....++..+++...+
T Consensus 295 ~~~~~~--~-~~-~------~-~~~l~~~~l~~~~~g~-~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G 361 (393)
T PRK15011 295 FYAGML--M-AH-S------P-AILLGLQLLNAIYIGI-LGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAG 361 (393)
T ss_pred HHHHHH--H-Hh-h------H-HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 1 11 0 1 1111111111111111 0112235567888865 888999888888888888888888
Q ss_pred HHHHHcCCchhhHHHHHHHHHHHHHHHHhcccC
Q 010848 434 TVAELVGTGATFLILAGIAVLAVVFVILFVPET 466 (499)
Q Consensus 434 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet 466 (499)
.+.+..++...|.+.+++.+++.+.. ++.||+
T Consensus 362 ~i~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 393 (393)
T PRK15011 362 IVAEIWNYHAVFWFALVMIIATLFCL-LRIKDV 393 (393)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH-HhhcCC
Confidence 88888888878877777776665544 445654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=201.07 Aligned_cols=342 Identities=15% Similarity=0.150 Sum_probs=218.8
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhh
Q 010848 58 YIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLG 137 (499)
Q Consensus 58 ~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig 137 (499)
+++++++. +....++..+.+.++..+++++.|+++||+|||+++.++.++..++.++.+++++++.+++.|++.|.+
T Consensus 33 ~l~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 109 (395)
T PRK10054 33 YLSRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCA 109 (395)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566643 445568899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH-HhccCChh
Q 010848 138 VGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM-LFMPESPR 216 (499)
Q Consensus 138 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~-~~lpesp~ 216 (499)
.+...+....+..|..|+++|++..+.......+|..+++.++..+.. .+||..|++.++..++..+.. +++||+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 187 (395)
T PRK10054 110 YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINLPFWLAAICSAFPLVFIQIWVQRSEK 187 (395)
T ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888899999999999999999999999999999999988877654 369999998887766654443 34555432
Q ss_pred HHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehh
Q 010848 217 WLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMY 296 (499)
Q Consensus 217 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (499)
. +++++ ++. .+.++.+++|+++............ ......
T Consensus 188 ~----~~~~~-------------------------~~~------~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~ 227 (395)
T PRK10054 188 A----IATET-------------------------GSV------WSPSVLLQDKALLWFTCSGFLASFV-----SGAFAS 227 (395)
T ss_pred c----cccch-------------------------hhh------hhhhhhccCceehHHHHHHHHHHHH-----HHHhhh
Confidence 0 00000 000 0113455666655443332211111 001111
Q ss_pred chHHHHHH---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 297 YSPTIVQM---AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 297 ~~p~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
+.+.+... .+.+....+..... ............+++.||.++|+.+..+.....+....+... .. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~-----~~ 298 (395)
T PRK10054 228 CISQYVMVVADSDFAEKVVAVVLPV-NAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS---GN-----SL 298 (395)
T ss_pred hHHHHHHHhcccchHHHHHHHHHHh-hhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc---ch-----HH
Confidence 22333321 22222222222222 222233445677899999999988766654444444333211 00 01
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV 453 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 453 (499)
+.......++.. ......|.......+..|++.|++..+..+ ..+++..+++...+.+.|..+....|.+.+....
T Consensus 299 --~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~ 374 (395)
T PRK10054 299 --LLWGMSAAVFTV-GEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIV 374 (395)
T ss_pred --HHHHHHHHHHHH-HHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHH
Confidence 111111111111 111223455667788889999998877543 6668888999999999998877666666555444
Q ss_pred HHHH
Q 010848 454 LAVV 457 (499)
Q Consensus 454 ~~~~ 457 (499)
+..+
T Consensus 375 ~~~~ 378 (395)
T PRK10054 375 AAWL 378 (395)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-22 Score=198.78 Aligned_cols=368 Identities=15% Similarity=0.102 Sum_probs=230.2
Q ss_pred HhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhH-HHHHHHHHHHHH
Q 010848 41 GGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY-----GRKK-ATLLADVVFTAG 114 (499)
Q Consensus 41 ~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~-----Grr~-~l~~~~~l~~~~ 114 (499)
-.+.+|+..+....++|..-++-+ .+....+++...... .+..+++|+++||+ |||| .+.++.++..++
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g---~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEG---LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 356677777788888888766644 344445666555554 58889999999999 8876 688888888877
Q ss_pred HHHHHhcC---chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchH
Q 010848 115 AIIMAAAP---DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWR 191 (499)
Q Consensus 115 ~~~~~~a~---s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr 191 (499)
..+.++.+ +++.+++..++.++..+...+...+++.|+.|+|+|+++.+....+..+|.++++.++..+.+...+||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 77777773 467788888888998999999999999999999999999999998889999998877766655334799
Q ss_pred HHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchh
Q 010848 192 WMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKE 271 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (499)
..|++.++..++..+..++.||+++.. +++++. .++ ....+++++++|.
T Consensus 162 ~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~------------------------~~~----~~~~~~~l~~~~~ 210 (402)
T PRK11902 162 NTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSL------------------------GEA----VVGPLRDFFSRRG 210 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccc---cccchh------------------------HHH----HHHHHHHHHhCcC
Confidence 999998877666555556678765421 000000 000 0012345667776
Q ss_pred hHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHH
Q 010848 272 IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGV 351 (499)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 351 (499)
++............... ...+..|++.+..|.+....+.........+..++.++++++.||++||+.+..+....
T Consensus 211 ~~~~l~~~~l~~~~~~~----~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~ 286 (402)
T PRK11902 211 AWALLLLIVLYKLGDAF----AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQ 286 (402)
T ss_pred HHHHHHHHHHHHhHHHH----HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 65543332221111111 01123345556678877666665444333446889999999999999998776554444
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhhHHHHHHHH---HHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHH
Q 010848 352 IISLVLLSWAFISGSSASSSGVYGWIAVIGLA---LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 428 (499)
Q Consensus 352 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~ 428 (499)
.+..+.+........+ . +....... +...............+..+.+|.+.++. ......++..+.
T Consensus 287 ~l~~l~~~~~~~~~~~-----~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 355 (402)
T PRK11902 287 AVSNLGYWVLAVTPKH-----L--WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYV 355 (402)
T ss_pred HHHHHHHHHHHhcCCc-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHH
Confidence 3333222211111110 1 11111111 11111122223444556677777665543 333444555545
Q ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHHH
Q 010848 429 AQTFLTVAELVGTGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 459 (499)
+...+.+.+..|+...|.+.+++++++....
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 5566677888899888888777777765443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-22 Score=197.80 Aligned_cols=359 Identities=14% Similarity=0.097 Sum_probs=218.9
Q ss_pred HhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010848 57 LYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGR-KKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVG 135 (499)
Q Consensus 57 ~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Gr-r~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~G 135 (499)
+++.++++ .+....|++.+++.++.+++++++|+++||+|| |+++.++.++..+++.+..+.++++.+.+.|++.|
T Consensus 27 ~~l~~~~g---~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (418)
T TIGR00889 27 SYMSKTLH---FSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANS 103 (418)
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34455544 355567999999999999999999999999965 77889889888888888899999999999999999
Q ss_pred hhhhhhhhhHHHHHh--------hcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH
Q 010848 136 LGVGIASVTAPVYIA--------EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 136 ig~g~~~~~~~~~i~--------e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~ 207 (499)
++.+...+...+... |......|.+..+ .+|..+++.++..+.. ...|+. |++.++..++..++
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~-~~~~~~-f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 104 LAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI-ELSNIQ-LYITAGSSALLGVF 175 (418)
T ss_pred HHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc-cchhHH-HHHHHHHHHHHHHH
Confidence 987766665554432 3233333444444 2456666665554422 223654 55555555555555
Q ss_pred HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHh
Q 010848 208 MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQ 287 (499)
Q Consensus 208 ~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 287 (499)
.+++||+|+- ++++++. . ++ ......++++|+|+++..++..+......
T Consensus 176 ~~~~~e~~~~---~~~~~~~-----------------------~-~~---~~~~~~~~~~k~~~~~~~~~~~~~~~~~~- 224 (418)
T TIGR00889 176 ALTLPDIPVA---KSTAKMS-----------------------I-KV---MLGLDAFILFKNKRMAIFFFFSMLLGAPL- 224 (418)
T ss_pred HhcCCCCCCC---ccccccC-----------------------H-HH---HhhhhHHHHhcCCCeeeHHHHHHHHHhHH-
Confidence 5678887631 1110000 0 00 00011234556666544333332221111
Q ss_pred ccCcceehhchHHHHHHcCCCC--------chHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 010848 288 FTGINTVMYYSPTIVQMAGFQS--------NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS 359 (499)
Q Consensus 288 ~~~~~~~~~~~p~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~ 359 (499)
.....+.|.+.++.|.++ ...+...++ ......++.+..+++.||+|||+++..+.....+...++.
T Consensus 225 ----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~-~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~ 299 (418)
T TIGR00889 225 ----QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSL-SQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA 299 (418)
T ss_pred ----HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 111234455666655443 233444333 3334677889999999999999998777665555543332
Q ss_pred HHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 010848 360 WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA-TVNWISNLIVAQTFLTVAEL 438 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~l~~~i~~~~~~~~~~~ 438 (499)
.. ... . ...+.......+...... ...+....+.+|.+|++.|+++.|+.+ ....++..+++...+.+.+.
T Consensus 300 ~~---~~~--~--~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 300 YG---DPE--Y--FGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred Hc---Ccc--h--hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 21 100 0 000111111111111111 123444567789999999999999997 55678888888888888776
Q ss_pred c------CCchhhHHHHHHHHHHHHHHHHhcccCCCCC
Q 010848 439 V------GTGATFLILAGIAVLAVVFVILFVPETQGLT 470 (499)
Q Consensus 439 ~------~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~ 470 (499)
. +|+..|++.+++.+++.+..+++.||+++.-
T Consensus 372 ~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 372 MFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred hccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 4 4667788888888888888888888885543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=230.50 Aligned_cols=392 Identities=14% Similarity=0.046 Sum_probs=233.0
Q ss_pred HHHHHHhhhhhhchhcchhhHH-hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH---HHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALL-YIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLL---ADVVF 111 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~---~~~l~ 111 (499)
+.-.++.+.++++...+..... .+..+.+ .......++..+++.+++++.++++|+++||+|||+++.. ..+++
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~ 95 (1140)
T PRK06814 18 WTQFFGAFNDNFLKNALVILILYGLSGALG--AYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI 95 (1140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence 3334455665555443332222 2222221 1123445778889999999999999999999999997533 33333
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchH
Q 010848 112 TAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWR 191 (499)
Q Consensus 112 ~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr 191 (499)
.+..+.+...++++.+++.|+++|++.+...|...+++.|++|+++|++++++......+|.++|+.+++.+... .+|+
T Consensus 96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-~~~~ 174 (1140)
T PRK06814 96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-GNFV 174 (1140)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 344444445689999999999999999999999999999999999999999999999999999999999887664 3699
Q ss_pred HHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchh
Q 010848 192 WMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKE 271 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (499)
+.|+..++.+++.+++.+++|+++.- .++...+. . ..++ ....++.+.+++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~------------~~~~----~~~~~~~~~~~~~ 226 (1140)
T PRK06814 175 ILVALLMGIAVLGWLASLFIPKTGNA--APDLKIDR----------N------------IIRS----TITLLKYAKADKR 226 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeecc----------c------------hHHH----HHHHHHHHhcCch
Confidence 99966666566656666667766421 00000000 0 0000 0012334556666
Q ss_pred hHHHHHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHH
Q 010848 272 IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG 350 (499)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 350 (499)
++...+....... .......+.|.+++ ..|.+....+.+.+.. .++..++.++.+++.|+..+++....+..+
T Consensus 227 ~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~-~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~ 300 (1140)
T PRK06814 227 IWLAILGISWFWL-----VGAVVLSQLPLLAKETLGGDENVATLFLAVF-SVGVAVGSFLASKLSEGRITLLYVPIGALL 300 (1140)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence 5554333221111 11222335666665 4677766666655444 445789999999999887766654444333
Q ss_pred HHHHHHHHHHHHhhC-C-CCCCC-------chhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHH
Q 010848 351 VIISLVLLSWAFISG-S-SASSS-------GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN 421 (499)
Q Consensus 351 ~~i~~~~~~~~~~~~-~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~ 421 (499)
..++.+.+.+..... . ..... ....+...+...++ +++.....+...++..+..|++.||++.|+.+..+
T Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~ 379 (1140)
T PRK06814 301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGL-AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN 379 (1140)
T ss_pred HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHH-HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH
Confidence 333322222210000 0 00000 00011111211111 12222223345678889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHHHHHhccc
Q 010848 422 WISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILFVPE 465 (499)
Q Consensus 422 ~l~~~i~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~pe 465 (499)
.++..+++.....+.+. .+....+++.+.+.++.....+...|+
T Consensus 380 ~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (1140)
T PRK06814 380 AAFMVAGTIILALLQALGFSIPWIILFIALANLIVAILILRLLPT 424 (1140)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 88888777776666532 233334444444444444444444444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=197.57 Aligned_cols=335 Identities=12% Similarity=0.058 Sum_probs=205.5
Q ss_pred chhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHHH-HHHHHHHHHHHHHHHhc
Q 010848 48 DTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY-----GRKKAT-LLADVVFTAGAIIMAAA 121 (499)
Q Consensus 48 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~-----Grr~~l-~~~~~l~~~~~~~~~~a 121 (499)
-..+++..+|.+.+|++... ...++..+. .+...+ .+++|+++||+ ||||.+ +.+.++..+...+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~g~s~---~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 3 PLGLVGNTLPYWLRSKNVSL---KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred CchhHHhHHHHHHHHcCCCH---HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 34567778888888876433 334555433 344444 88999999998 899974 66777777777777777
Q ss_pred C---chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCC-------chH
Q 010848 122 P---DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG-------TWR 191 (499)
Q Consensus 122 ~---s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~-------~Wr 191 (499)
+ +.+.+...+++.|.+.+...+...+++.|++|+|+|+++.+....+...|.++++.++..+.+..+ +||
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 3 556677788888988888999999999999999999999999999999999999888766654322 299
Q ss_pred HHHHhhhHHHHHHHHHHHh-ccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcch
Q 010848 192 WMLGVSAVPAIIQFVLMLF-MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK 270 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~~~-lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (499)
..|++.++..++..+..++ .||+++. +.+.++. +++ . ....++++++|
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~------------------------~~~--~--~~~~~~~~~~~ 206 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPL------------------------TQA--V--LKPIREFFQRK 206 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhH------------------------HHH--H--HHHHHHHHHhc
Confidence 9999998877776655543 5664321 0000000 000 0 00123344444
Q ss_pred hhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHH
Q 010848 271 EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG 350 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 350 (499)
..+........ ..+. .........+.|.++++.|++..+.+............++.++++++.||+|||+.+..+...
T Consensus 207 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~ 284 (356)
T TIGR00901 207 NMIQALLLLLL-IVLY-KLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV 284 (356)
T ss_pred CchHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 31111111111 1111 122233344567777778887777666555444445678999999999999998887766655
Q ss_pred HHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHH
Q 010848 351 VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN 421 (499)
Q Consensus 351 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~ 421 (499)
..+...+..+........+......+.... ..+...+......+...++.+|.+|++.|++..|+.++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 285 QALTNAGFVWLASNGHHDGITFPHLLMLFL-TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHHHhcCcccccccchHHHHHH-HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 554444333221111000000001111111 1111122222234566788899999999999998877654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=193.86 Aligned_cols=358 Identities=11% Similarity=0.021 Sum_probs=229.3
Q ss_pred HHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH----HHHHHHHHHHH
Q 010848 40 IGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKAT----LLADVVFTAGA 115 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l----~~~~~l~~~~~ 115 (499)
++.+...+..++..+.+|.+.+|++ .+....+++.+++.++..++++++|+++||+|||+.. ..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g---~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-- 85 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIG---LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--
Confidence 3445555555666666777777764 3556678899999999999999999999999985433 333322222
Q ss_pred HHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 010848 116 IIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLG 195 (499)
Q Consensus 116 ~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~ 195 (499)
..+..+++++.+++.|.++|.+.+...|...++..|+ +++|++..+......++|..+++.++..+.+.. +||+.|+
T Consensus 86 ~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~f~ 162 (382)
T TIGR00902 86 AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNILA 162 (382)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHH
Confidence 3455788999999999999999988888888887765 567888999988889999999998877776543 5999998
Q ss_pred hhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHH
Q 010848 196 VSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLA 275 (499)
Q Consensus 196 ~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (499)
+.....++.+ ..+.++|+++. ++++++ + +.++..+.++++|+|+++..
T Consensus 163 ~~~~~~~~~~-~~~~~~~~~~~---~~~~~~--------------------------~--~~~~~~~~~~~l~~~~~~~~ 210 (382)
T TIGR00902 163 ILTAGLAFML-IGFLIKPTIPP---KDAIPE--------------------------D--ESQGDSAFIALLKNPMNLRF 210 (382)
T ss_pred HHHHHHHHHH-HHHHcCCCCCC---Cccccc--------------------------c--ccccchhHHHHHcChHHHHH
Confidence 8765433322 23334443210 000000 0 00011234567788776654
Q ss_pred HHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHH
Q 010848 276 FLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISL 355 (499)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~ 355 (499)
.+...... ........+.|.++++.|.+....+..... ......++..+.+++.||+|+|+.+..+.....+..
T Consensus 211 l~~~~l~~-----~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~-~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~ 284 (382)
T TIGR00902 211 LAAVCLIQ-----GAHAAYYGFSAIYWQAAGISASATGLLWGI-GVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRW 284 (382)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHCCCCHhHHHHHHHH-HHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 44322211 122333346677778889888777776654 445578888999999999999998877776666655
Q ss_pred HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHH-HHHHHHHHHHHHHHH
Q 010848 356 VLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT-VNWISNLIVAQTFLT 434 (499)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~-~~~l~~~i~~~~~~~ 434 (499)
..+.... + . +. +....+.-........+....++++. |++.|+++.++.++ ...++..+++..-+.
T Consensus 285 ~~~~~~~----~-----~--~~-~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~ 351 (382)
T TIGR00902 285 AIIGAIE----A-----F--PL-IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF 351 (382)
T ss_pred HHHHhHh----h-----H--HH-HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443211 0 0 11 11111111111111122334566677 89899988888654 344677777888888
Q ss_pred HHHHcCCchhhHHHHHHHHHHHH
Q 010848 435 VAELVGTGATFLILAGIAVLAVV 457 (499)
Q Consensus 435 ~~~~~~~~~~f~~~~~~~~~~~~ 457 (499)
+.|..+. ..|.+.+++.+++.+
T Consensus 352 l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 352 IYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHhccH-HHHHHHHHHHHHHHH
Confidence 8888775 567777777765543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=196.29 Aligned_cols=355 Identities=17% Similarity=0.131 Sum_probs=196.9
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---hcCc-----hhHHHHH
Q 010848 59 IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA---AAPD-----PYVLILG 130 (499)
Q Consensus 59 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~---~a~s-----~~~li~~ 130 (499)
+.++++ .+....+++.+++.++..++++++|+++||+|||+++.++..+..++..... .++. ....++.
T Consensus 37 l~~~~g---~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (420)
T PRK09528 37 LHDING---LSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVG 113 (420)
T ss_pred HHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554 3555678999999999999999999999999999999887666655443211 1111 1111223
Q ss_pred HHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHh
Q 010848 131 RLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 210 (499)
Q Consensus 131 R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~ 210 (499)
+++.|.+.....+....+..+. .++||...+.......+|..+++.+++.+... +||+.|++.++..++.++..++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 114 GIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhc
Confidence 3333333333333333333222 23466677777777778888888877666442 6999999988777766655554
Q ss_pred c-cCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhcc
Q 010848 211 M-PESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 289 (499)
Q Consensus 211 l-pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (499)
. ||.|+....+ ++++ ++.++.+.....+.+++|+++...+.........
T Consensus 190 ~~~~~~~~~~~~-~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~--- 239 (420)
T PRK09528 190 AKPDAPSTAKVA-NALG--------------------------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFY--- 239 (420)
T ss_pred ccccccchhhhc-cchh--------------------------cccccccHHHHHHHccCCCeEeehHHHHHHHHHH---
Confidence 4 3332210000 0000 0000000012234556666544332221111110
Q ss_pred CcceehhchHHHHH----HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhC
Q 010848 290 GINTVMYYSPTIVQ----MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG 365 (499)
Q Consensus 290 ~~~~~~~~~p~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~ 365 (499)
.....+.|.+.. ..+.+....+...++.. ....++.+++|++.||++||+.+..+.....+...++.+.
T Consensus 240 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~---- 312 (420)
T PRK09528 240 --DVFDQQFPNFFASFFATPEQGTRVFGYLNSFQV-FLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA---- 312 (420)
T ss_pred --HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc----
Confidence 011112233332 22333334444444433 3467889999999999999998766655544444333221
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCchh
Q 010848 366 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM-SATVNWISNLIVAQTFLTVAELVGTGAT 444 (499)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 444 (499)
.+ . +.... ..+..........+....+..|.+|++.|++..+. .+....++..+++...+.+.|..|++..
T Consensus 313 ~~-----~--~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~ 384 (420)
T PRK09528 313 TG-----P--LEVSI-LKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGT 384 (420)
T ss_pred cc-----H--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 11 0 11111 11111111111112334567788999999877655 4555678888888888888888899888
Q ss_pred hHHHHHHHHHHHHHHHHhccc
Q 010848 445 FLILAGIAVLAVVFVILFVPE 465 (499)
Q Consensus 445 f~~~~~~~~~~~~~~~~~~pe 465 (499)
|.+.+++.++..++.++..++
T Consensus 385 f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 385 YLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 998888887776666655544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=186.03 Aligned_cols=349 Identities=12% Similarity=0.016 Sum_probs=213.3
Q ss_pred hchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchh----HHHHHHHHHHHHHHHHHHhcC
Q 010848 47 YDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRK----KATLLADVVFTAGAIIMAAAP 122 (499)
Q Consensus 47 ~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr----~~l~~~~~l~~~~~~~~~~a~ 122 (499)
...+++.+.+|...+|++ .+....++..+.+.++..++++++|++.||+||| +.+.+...+. ....+..++
T Consensus 18 ~~~g~~~p~l~~~l~~~g---~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQG---YTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAH 92 (382)
T ss_pred HHHHHHhhhHHHHHHhcC---CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence 344566666666666664 3556678999999999999999999999999984 3332222222 223345568
Q ss_pred chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHH
Q 010848 123 DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAI 202 (499)
Q Consensus 123 s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 202 (499)
+++.+++.|++.|++.+...+...++..++ +++|++..+.......+|..+++.++..+.+.. +||..|++.+...+
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f~~~~~~~~ 169 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAILWILTAGVA 169 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHHHHH
Confidence 899999999999999998888888888877 455777777777777889999998887775533 69999998776554
Q ss_pred HHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHH
Q 010848 203 IQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGL 282 (499)
Q Consensus 203 l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (499)
+..+..++.||.++ ++++++ + .++...++++++++|+++......+..
T Consensus 170 ~~~~~~~~~~~~~~----~~~~~~---------------------------~-~~~~~~~~~~i~~~~~~~~~~~~~~l~ 217 (382)
T PRK11128 170 SMLLGQLLRPTIMP----QGESRQ---------------------------Q-ESAGWPAWKALLKEPTVWRFLLCVSLL 217 (382)
T ss_pred HHHHHHHccCCCCC----cccccc---------------------------c-cccccchHHHHHcChhHHHHHHHHHHH
Confidence 44444444455321 000000 0 000112456677887766544332221
Q ss_pred HHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHH
Q 010848 283 QAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 362 (499)
Q Consensus 283 ~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~ 362 (499)
.. .......+.|.+.++.|.+....+...... .....+...+.+++.||+++|+.+..+.....+....+...
T Consensus 218 ~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~- 290 (382)
T PRK11128 218 QG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLG-VVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST- 290 (382)
T ss_pred HH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-
Confidence 11 122233455667677888877777666543 34567788899999999999998776665555544333211
Q ss_pred hhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC
Q 010848 363 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV-NWISNLIVAQTFLTVAELVGT 441 (499)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~l~~~i~~~~~~~~~~~~~~ 441 (499)
++ .+.......+....+.. ..+....+..+. +++.+++..+..... ..++..+++...+.+.|..+.
T Consensus 291 ---~~-------~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 291 ---TA-------LPWLIVIQILHCGTFTV-CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred ---hh-------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 00 11111111111111111 122333445555 555567777766533 344556777777888887765
Q ss_pred chhhHHHHHHHHHH
Q 010848 442 GATFLILAGIAVLA 455 (499)
Q Consensus 442 ~~~f~~~~~~~~~~ 455 (499)
..++..+++.+++
T Consensus 359 -~~~~~~~~~~~~~ 371 (382)
T PRK11128 359 -GVFWVMALVALPA 371 (382)
T ss_pred -HHHHHHHHHHHHH
Confidence 3555555555444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=212.54 Aligned_cols=303 Identities=15% Similarity=0.192 Sum_probs=207.1
Q ss_pred HHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA 115 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 115 (499)
+..++..+..+++.+.++.+++.++++|+.. +...|++.+.+.+|+++++++.++++||+|||+.+.++.+++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~ls---s~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLS---TSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCC---CCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 3344567777788899999999999999753 3345789999999999999999999999999999999999999999
Q ss_pred HHHHhcC---------------------------------------------------chhHHHHHHHHHHhhhhhhhhh
Q 010848 116 IIMAAAP---------------------------------------------------DPYVLILGRLLVGLGVGIASVT 144 (499)
Q Consensus 116 ~~~~~a~---------------------------------------------------s~~~li~~R~l~Gig~g~~~~~ 144 (499)
+++++.+ .+..++++|+++|+|.+..++.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 9887652 2457889999999999999999
Q ss_pred HHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCC---------------------CchHHHHHhhhHHHHH
Q 010848 145 APVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVP---------------------GTWRWMLGVSAVPAII 203 (499)
Q Consensus 145 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~---------------------~~Wr~~f~~~~~~~~l 203 (499)
..+++.|++|+++|+++++.......+|..+|++++..+.... +.||..|++.++++++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877654321 1377778888877777
Q ss_pred HHHHHHhccCC-hhHHhh-cCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHH
Q 010848 204 QFVLMLFMPES-PRWLFM-KSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAG 281 (499)
Q Consensus 204 ~~~~~~~lpes-p~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (499)
..+.++++|+. |+...+ +.+.++... . ... +++ .. ... ....++.....++++++|.++...+....
T Consensus 273 ~~v~l~~~p~~lp~~~~~~~~~~~~~~~-~----~~~--~~~-~~--~~~-~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~ 341 (633)
T TIGR00805 273 TSIPFFFFPKALPKEGKRVNVDVHETEK-L----EKS--EDK-SR--KKN-SDITKDFPKIIKRLLCNPIYMLVILAQVI 341 (633)
T ss_pred HHHHHHhCccccCCcccccchhhhhhhc-c----ccc--ccc-cc--hhh-hhhHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 66666666654 221000 000000000 0 000 000 00 000 00000111235578888876655443322
Q ss_pred HHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHhhHHHHHHHHH
Q 010848 282 LQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR--KKLALSSLAGVIISLVL 357 (499)
Q Consensus 282 ~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~~~~~~~~~~i~~~~ 357 (499)
. ....+....+.|.+++ ..|.++...+.+.......+..++.+++|+++||+++ |+.+..++....+++++
T Consensus 342 ~-----~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 342 D-----SLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred H-----HHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 1 2233445567788776 5788877766665554443457899999999999984 45555555555554433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-20 Score=188.01 Aligned_cols=142 Identities=11% Similarity=0.164 Sum_probs=117.5
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHhcCchhH-HHHHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAPDPYV-LILGRL 132 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~a~s~~~-li~~R~ 132 (499)
...+++++++.... ...++.+.+.....+..+++|+++|| +||||++.++.+++.++++.++++++... ++++|.
T Consensus 37 l~~yl~~~lg~~~~---~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~ 113 (489)
T PRK10207 37 LAVFFVKQLGFSQE---QAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALG 113 (489)
T ss_pred HHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 34466777764332 23567777887777778899999999 99999999999999999999999887554 558999
Q ss_pred HHHhhhhhhhhhHHHHHhhcCCcC--cccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHH
Q 010848 133 LVGLGVGIASVTAPVYIAEASPSE--VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVP 200 (499)
Q Consensus 133 l~Gig~g~~~~~~~~~i~e~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~ 200 (499)
++|+|.|...+...++++|.+|++ +|++..+.+....++|..+++.++..+.+.. +||+.|++.++.
T Consensus 114 l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~ 182 (489)
T PRK10207 114 TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAG 182 (489)
T ss_pred HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHH
Confidence 999999999999999999999887 4577888899999999999998888776654 599999997553
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=185.26 Aligned_cols=351 Identities=14% Similarity=0.086 Sum_probs=206.8
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HhcC-----chhHHHHH
Q 010848 59 IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAAP-----DPYVLILG 130 (499)
Q Consensus 59 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~---~~a~-----s~~~li~~ 130 (499)
+.++++. +....+++.+.+.++..++++++|+++||+|||+.++.++....++.... .+.+ .+..+++.
T Consensus 29 ~~~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (396)
T TIGR00882 29 LHDVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVG 105 (396)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445543 44556889999999999999999999999999999988777665544322 1222 23345677
Q ss_pred HHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHh
Q 010848 131 RLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 210 (499)
Q Consensus 131 R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~ 210 (499)
|++.|++.+...+....+..|..++ ++...+.......+|..+++.+++.+.. .+||+.|++.+...++..++.+.
T Consensus 106 ~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~--~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 106 GLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFS--IDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhc--cCchHHHHHHHHHHHHHHHHHHH
Confidence 8999999888888888888776433 3344455556667788888887766544 26999999988777766555444
Q ss_pred -ccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhcc
Q 010848 211 -MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 289 (499)
Q Consensus 211 -lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (499)
.||+|+. ++..+ ..+.+.++++..+..+++++|+++...+.......
T Consensus 182 ~~~~~~~~-------~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~----- 229 (396)
T TIGR00882 182 AKPKAPSS-------ATVAN--------------------ALGANASAFSLKLALELFRQRKFWMFVLYVVGVAC----- 229 (396)
T ss_pred hCCCCchh-------hhhhc--------------------ccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHH-----
Confidence 3444321 00000 00000001111234567777776544332221111
Q ss_pred CcceehhchHHHHHHc----CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhC
Q 010848 290 GINTVMYYSPTIVQMA----GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG 365 (499)
Q Consensus 290 ~~~~~~~~~p~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~ 365 (499)
..+....+.|.+++.. +.+....+...+.. .....++....+++.||++||+.+..+.....+...+... .
T Consensus 230 ~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~-~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~----~ 304 (396)
T TIGR00882 230 VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMG-ELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF----A 304 (396)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh----c
Confidence 1111112334444433 33333344444333 3345777888899999999999876665544443332221 1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCchh
Q 010848 366 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM-SATVNWISNLIVAQTFLTVAELVGTGAT 444 (499)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 444 (499)
.+ . +....... ...............+..+..|++.++++.+. .+....+++.+++...+.+.+..|+...
T Consensus 305 ~~----~---~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~ 376 (396)
T TIGR00882 305 TT----A---LEVVILKM-LHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGA 376 (396)
T ss_pred CC----h---HHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 11 0 11111111 11111111111223455677788888776655 4566778888888888888898899888
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010848 445 FLILAGIAVLAVVFVIL 461 (499)
Q Consensus 445 f~~~~~~~~~~~~~~~~ 461 (499)
|++.+++.++......+
T Consensus 377 f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 377 YLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777665443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-20 Score=188.70 Aligned_cols=336 Identities=15% Similarity=0.170 Sum_probs=204.2
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHHHHHHHhcCc------
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA----YGRKK-ATLLADVVFTAGAIIMAAAPD------ 123 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr----~Grr~-~l~~~~~l~~~~~~~~~~a~s------ 123 (499)
..+++.++++ .+....+++.++..+..++.+|+.|+++|| +|||| .++.+...+.++.+++.+.++
T Consensus 22 l~~~~~~~~g---~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (437)
T TIGR00792 22 LLFFYTDVLG---LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK 98 (437)
T ss_pred HHHHHHHccC---CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence 3444555554 345557889999999999999999999998 68754 577788888888888877765
Q ss_pred hhHHHHHHHHHHhhhhhhhhhHHHHHhhcC-CcCcccchhhHhHHHHHHHHHHHHHhhhhcc------CCCCchHHHHHh
Q 010848 124 PYVLILGRLLVGLGVGIASVTAPVYIAEAS-PSEVRGGLVSTNVLMITSGQFLSYLVNLAFT------EVPGTWRWMLGV 196 (499)
Q Consensus 124 ~~~li~~R~l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~------~~~~~Wr~~f~~ 196 (499)
...+++.+++.+++.+...+...++..|.. ++++|++..+....+..+|.+++..+...+. ....+||+.+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i 178 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence 356677889999988887777788889987 5688998888877777777666544332221 112369999998
Q ss_pred hhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHH
Q 010848 197 SAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLA 275 (499)
Q Consensus 197 ~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (499)
.++++++..+.. +..||.++. .+.++ +.+.+.....++++++|+++..
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~~----~~~~~---------------------------~~~~~~~~~~~~l~~~~~~~~~ 227 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYSE----IPKNI---------------------------EKKLSLKQIFKALFKNDQLLIL 227 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCCC----CCccc---------------------------ccCCCHHHHHHHHhCCHHHHHH
Confidence 888777655553 456775421 00000 0000000123455677766654
Q ss_pred HHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHH
Q 010848 276 FLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISL 355 (499)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~ 355 (499)
.+......... .....+.+++.+....+....+.+..+ .....+++.++.+++.||+|||+.+..+.....++.
T Consensus 228 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~ 301 (437)
T TIGR00792 228 CLAYLFYNLAF-----NIKNGVQVYYFTYVLGDPELFSYMGSI-AIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGY 301 (437)
T ss_pred HHHHHHHHHHH-----HHHcchhheeEeeecCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 43322221111 111112233333221223333433333 345578889999999999999998877665555544
Q ss_pred HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCc-------chhhhhHHHHHHHHHHHHHHHH
Q 010848 356 VLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYP-------EQYRGICGGMSATVNWISNLIV 428 (499)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~l~~~i~ 428 (499)
+.+.+. . + .. +.......+ ..+......+..+++.+|..| ++.+|...|+.+....++..++
T Consensus 302 ~~~~~~---~-~----~~--~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg 370 (437)
T TIGR00792 302 LIFFFA---G-S----NL--PLILVLIIL-AGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA 370 (437)
T ss_pred HHHHHc---c-h----hH--HHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 433221 1 0 00 111111111 111111223445566666654 5567888899999999999888
Q ss_pred HHHHHHHHHHcCC
Q 010848 429 AQTFLTVAELVGT 441 (499)
Q Consensus 429 ~~~~~~~~~~~~~ 441 (499)
+.+.+.+.+..|+
T Consensus 371 ~~i~g~ll~~~G~ 383 (437)
T TIGR00792 371 GFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHcCC
Confidence 8888887776665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-18 Score=176.76 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=131.2
Q ss_pred HhhhhhhchhcchhhHHhh-hhh--hccccccchhHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHH
Q 010848 41 GGLLFGYDTGVISGALLYI-KDD--FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAI 116 (499)
Q Consensus 41 ~~~~~g~~~~~i~~~~~~i-~~~--~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~ 116 (499)
..+.+.+....+...+|.. .++ +| .+....+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.+
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg---~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~ 94 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQQAGLG---FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF 94 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 3444444444444445443 333 43 344456889999999999999999999999 8999999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCc---ccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 010848 117 IMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV---RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWM 193 (499)
Q Consensus 117 ~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~---Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~ 193 (499)
+.++++++..+++.|++.|+|.|...+...++++|++|+++ |+...+......++|..+++.++..+.+.. +||+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~ 173 (475)
T TIGR00924 95 MLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVG 173 (475)
T ss_pred HHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHH
Confidence 99999999999999999999999999999999999998864 888889999999999999999887765533 59999
Q ss_pred HHhhhHHHHHHHHHH
Q 010848 194 LGVSAVPAIIQFVLM 208 (499)
Q Consensus 194 f~~~~~~~~l~~~~~ 208 (499)
|++.++..++..+..
T Consensus 174 f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 174 FNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999776544443333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-19 Score=179.30 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=120.1
Q ss_pred hhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc------CchhHH
Q 010848 54 GALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA------PDPYVL 127 (499)
Q Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a------~s~~~l 127 (499)
...+.++++++... ...+++.+.. .....++++.|+++||+|||+++.++.+++.+++++++++ ++++.+
T Consensus 48 v~s~~L~~~lgls~---~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l 123 (591)
T PTZ00207 48 LISGAMQARYNLTQ---RDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL 123 (591)
T ss_pred HHHHHHHHHhCcCH---HHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence 44566788886533 2234455442 3334567788999999999999999999999999999997 689999
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHH-HHHhhhhccCCCCchHHHHHhhhHHHHHHHH
Q 010848 128 ILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFL-SYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 206 (499)
Q Consensus 128 i~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l-~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~ 206 (499)
.+.|+++|+|.+...+.....+.+|+| ++||.+.+.......+|..+ +++....+. .+|++.|++.++.+++..+
T Consensus 124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~---~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS---DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 67999999999998888875 444443332 2588888887776665444
Q ss_pred HH-Hh--ccCChhHHhhc
Q 010848 207 LM-LF--MPESPRWLFMK 221 (499)
Q Consensus 207 ~~-~~--lpesp~~l~~~ 221 (499)
+. .+ .|++|++..++
T Consensus 200 l~~~~vr~p~~~~~~~~~ 217 (591)
T PTZ00207 200 LAIVFMRLPPFHLTGYQE 217 (591)
T ss_pred HHHhheeCCcchhhcccc
Confidence 43 33 36666654343
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=169.09 Aligned_cols=361 Identities=17% Similarity=0.197 Sum_probs=246.4
Q ss_pred HHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 010848 37 IAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAI 116 (499)
Q Consensus 37 ~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~ 116 (499)
.+..-.+++|+.......-+|+.++.|+.+..+ .+++...++.|+.+++++.|.+.+|+|+|+.++.++.++++++.
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~---a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE---ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH---HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334456888999888899999999999875544 47788999999999999999999999999999999999999998
Q ss_pred HHH---hcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC-------
Q 010848 117 IMA---AAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV------- 186 (499)
Q Consensus 117 ~~~---~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~------- 186 (499)
+.. ...++..++++-++.|.|.|...+.+..|++...|++.-...+...+.+...|.+++|.++..+...
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 874 5678999999999999999999999999999999998777778888889999999998887655331
Q ss_pred -----------CCchHHHHHhhhHHHHHHHHHHHh--ccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHH
Q 010848 187 -----------PGTWRWMLGVSAVPAIIQFVLMLF--MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEE 253 (499)
Q Consensus 187 -----------~~~Wr~~f~~~~~~~~l~~~~~~~--lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (499)
...||++|...+...++..+.... +||.+.- ++
T Consensus 174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------------------------~~ 219 (422)
T COG0738 174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------------------------AP 219 (422)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc----------------------------------cc
Confidence 124888888766555544444332 3332210 00
Q ss_pred HHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 010848 254 ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGI 332 (499)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g 332 (499)
+..+++.....+++++|+.+...+..+..... -..+..+.+.++.+ .|.+..+.+...+ ...++..+|.+++.
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~-----Eva~gsfl~~y~~~~~g~~~~~aa~~~s-~~~~~~~vGRFig~ 293 (422)
T COG0738 220 SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGA-----EVAIGSFLVSYLEELLGLNEQQAAYYLS-FFWVGFMVGRFIGS 293 (422)
T ss_pred cccccccchHHHHHhChHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHhcCCccHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 00111111456788888877665543322222 22334566777766 5666555555544 44555799999999
Q ss_pred HHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhh
Q 010848 333 YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGI 412 (499)
Q Consensus 333 ~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 412 (499)
+++.|+...+.+.....+..+.++... .. .. ...+. ..+.++.++..+.|..++...+..|+ .-+
T Consensus 294 ~lm~~~~~~k~Laf~a~~~ill~~~~~--l~-~g---------~v~~~-~l~~ig~F~simfPTIfslal~~l~~-~ts- 358 (422)
T COG0738 294 ALMSRIKPEKYLAFYALIAILLLLAVA--LI-GG---------VVALY-ALFLIGLFNSIMFPTIFSLALKNLGE-HTS- 358 (422)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHH--Hh-cC---------hHHHH-HHHHHHHHhHHHHHHHHHHHHhccCc-ccc-
Confidence 999999998887654433222222222 11 11 11111 11223345555678888888888883 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q 010848 413 CGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 455 (499)
Q Consensus 413 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 455 (499)
..|....+...|+.+.|...+.+.|+.+....+...-.+|.+-
T Consensus 359 ~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ly 401 (422)
T COG0738 359 VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLY 401 (422)
T ss_pred ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344555666788899999999999887765555434444333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=173.59 Aligned_cols=372 Identities=14% Similarity=0.031 Sum_probs=221.1
Q ss_pred HHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHH--HHHHHHHHHHHHHhh-hhhhhhhchhHHHHHHHHHHHH
Q 010848 37 IAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETI--VSMALVGAIVGAASG-GWINDAYGRKKATLLADVVFTA 113 (499)
Q Consensus 37 ~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~--~s~~~lg~~ig~~~~-g~l~Dr~Grr~~l~~~~~l~~~ 113 (499)
......+.+|+-.+.+.+.+|...+|.+. +....+.. .+...+...+.++++ ++..||+||||..++.+.+...
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHH
Confidence 34456788999999999999998887653 44445664 355566666677777 5578999999987666543222
Q ss_pred -HHHHHH-h--cCc-hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCC
Q 010848 114 -GAIIMA-A--APD-PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG 188 (499)
Q Consensus 114 -~~~~~~-~--a~s-~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~ 188 (499)
.....+ + ..+ ...++..-++.++..+...+....+..|..++++++...+....+..+|.+++......+.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~-~ 160 (390)
T TIGR02718 82 ACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK-F 160 (390)
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 122222 2 222 234445555666667777777888888988888888777777777778888887655444433 2
Q ss_pred chHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhc
Q 010848 189 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFK 268 (499)
Q Consensus 189 ~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (499)
+||..|++.+...++..+..++++|+++. +.+.++ ++..+.++.+|
T Consensus 161 gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~-------------------------------~~~~~~~~~l~ 206 (390)
T TIGR02718 161 GQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL-------------------------------ARRASLFRFFR 206 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch-------------------------------hhHHHHHHHHc
Confidence 69999999988776655555555443210 000000 00012345566
Q ss_pred chhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhh
Q 010848 269 SKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 348 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 348 (499)
+|..+........... .......+.+.++++.|++..+.+............++.+++|++.||+|+|+.+..+.
T Consensus 207 ~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~ 281 (390)
T TIGR02718 207 RPLAWSLLALALLSAM-----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV 281 (390)
T ss_pred CcCHHHHHHHHHHHHH-----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6665443333221111 11222234566667789988777776655444445778899999999999999877655
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcc-hhhhhHHHHHHHHHHHHHHH
Q 010848 349 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-QYRGICGGMSATVNWISNLI 427 (499)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~l~~~i 427 (499)
....+..... ....... .... . ... ....+...+......+..++...+..++ +.+++..+..++...++..+
T Consensus 282 ~~~~~~~~~~-~~~~~~~--~~~~-~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~ 355 (390)
T TIGR02718 282 GLAGSLALLW-FAQAAFW--LAPG-I-AVA-WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELI 355 (390)
T ss_pred HHHHHHHHHH-HHHHHcc--cCCc-H-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHH
Confidence 4432222211 1111100 0000 1 111 1111111111111112333444455554 88999999999999999999
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q 010848 428 VAQTFLTVAELVGTGATFLILAGIAVLAVV 457 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 457 (499)
++...+.+.+..|+...|.+.+++.+++..
T Consensus 356 g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 356 ASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999988888888887777776666655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-18 Score=176.11 Aligned_cols=352 Identities=16% Similarity=0.157 Sum_probs=226.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHhhhhhhh
Q 010848 68 QSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA-----APDPYVLILGRLLVGLGVGIAS 142 (499)
Q Consensus 68 ~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~-----a~s~~~li~~R~l~Gig~g~~~ 142 (499)
.++...+++.++..+..++.++++|.++||+.|||+++.+.++..+.++..++ ..+.+.+++.-++.|++.+...
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 35566788888999999999999999999999999999999887766544332 2467889999999999999999
Q ss_pred hhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcC
Q 010848 143 VTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKS 222 (499)
Q Consensus 143 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~ 222 (499)
|.-.+++.|..|+++...+.+.+....++..++||.+++.+.... |-.+.|.+.++.-++.+......+..++. .+.
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~~~~~~--~~~ 198 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF-GAAAAFLINALSFLISILALLRWKPPPPP--SSL 198 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccccccc--ccc
Confidence 999999999999999999999999999999999998887765432 35678888876554444333333221110 000
Q ss_pred CHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHH
Q 010848 223 DKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV 302 (499)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 302 (499)
++|+- .++. ...++.+.++|.++..+........ . .......+|.+.
T Consensus 199 ~~e~~------------------------~~~l----~~G~ryv~~~~~l~~~l~~~~~~~l----~-~~a~~aLlPl~a 245 (524)
T PF05977_consen 199 PRERF------------------------FSAL----REGLRYVRSSPPLRSVLLRSFLFNL----F-ASAVWALLPLFA 245 (524)
T ss_pred chhhh------------------------hhhH----HHHHHHHhcchHHHHHHHHHHHHHH----h-hhHHHHhhhHHH
Confidence 00000 0000 0112223344544443332221111 1 111223467766
Q ss_pred H-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHH
Q 010848 303 Q-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 381 (499)
Q Consensus 303 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (499)
+ ..|.++...+.+.+.. +++.++|.++.+++.+|+++++++..+.....++.+.+.+.. ..+.....
T Consensus 246 ~~~l~~~a~~yGll~a~~-gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-----------~~~~~~~~ 313 (524)
T PF05977_consen 246 RDVLGGGASGYGLLLAAF-GVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP-----------SFWLALIA 313 (524)
T ss_pred HHHhCCcHHHHHHHHHHH-HHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-----------HHHHHHHH
Confidence 4 5677766667666544 445788888888999998888877665555444444333210 01221111
Q ss_pred HHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHH
Q 010848 382 LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 461 (499)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 461 (499)
+.+. +...........+...+..|++.||+..++..+....+..++....+.+.+..|....+.+.++..+++.++...
T Consensus 314 l~l~-G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 314 LFLA-GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111111223334667889999999999999999888888888888999889888877777766665555554432
Q ss_pred -hcccCCC
Q 010848 462 -FVPETQG 468 (499)
Q Consensus 462 -~~pet~~ 468 (499)
-+|+.+.
T Consensus 393 ~~l~~~~~ 400 (524)
T PF05977_consen 393 FPLRQGEE 400 (524)
T ss_pred hcCccccc
Confidence 3344433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=174.85 Aligned_cols=179 Identities=13% Similarity=0.136 Sum_probs=145.2
Q ss_pred HHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHH
Q 010848 35 TVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAG 114 (499)
Q Consensus 35 ~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 114 (499)
....|+=+|+.-+= ...+.+.|++.+|+|.+..+- .+.+.+++..++++++++.|+++||+|.|+++.++.+.+++.
T Consensus 29 ~~~lC~fGF~~e~R-~n~s~a~p~L~~elglT~~qv--~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~ 105 (511)
T TIGR00806 29 VLYLCFYGFMAQFR-PGESFITPYLLTVLNFTEETV--TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV 105 (511)
T ss_pred HHHHHHHHHHHHhh-chHHHHHHHHHHHcCCCHHHh--cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 33344555655554 346667888888887643321 578999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 010848 115 AIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWML 194 (499)
Q Consensus 115 ~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f 194 (499)
+++.++++++..+.+.|++.|++.|... ....++..|+|+++|+++.+....+..+|.+++++++..+.. .+||+.+
T Consensus 106 t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s--~gWr~y~ 182 (511)
T TIGR00806 106 WLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT--LGWISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999888776433 3699865
Q ss_pred Hhhh---HHHHHHHHHHHhccCChhHHh
Q 010848 195 GVSA---VPAIIQFVLMLFMPESPRWLF 219 (499)
Q Consensus 195 ~~~~---~~~~l~~~~~~~lpesp~~l~ 219 (499)
.++- ....+.+++.+++|..++-+.
T Consensus 183 ~Ln~Isl~s~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 183 TLNIISLVFMTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence 5543 334455566678886555333
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=168.37 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=106.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHH
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVY 148 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~ 148 (499)
.....|.+-|.+.++..+.++.+|.++||+|||++++.+++...+...+-++++|+..++++|++.|+.-|-. .+..++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence 4556688899999999999999999999999999999999999999999999999988888899999998854 468889
Q ss_pred HhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC
Q 010848 149 IAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE 185 (499)
Q Consensus 149 i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~ 185 (499)
++|+.++|+|+..++.....+.+|.++||++|+.+.+
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999999999999987766
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=183.35 Aligned_cols=396 Identities=17% Similarity=0.175 Sum_probs=245.3
Q ss_pred hhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC
Q 010848 43 LLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP 122 (499)
Q Consensus 43 ~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~ 122 (499)
+.+|+..+ .+...+.++++|+....+ .+|+.++..-.+.+..|+.+.+.||+|.|++.+.+.++.+++.+++.+++
T Consensus 57 ~~~g~~~~-~Gv~~~~~~~~f~~s~~~---~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~ 132 (509)
T KOG2504|consen 57 STDGLINS-FGLLFEELMDYFGSSSSQ---IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT 132 (509)
T ss_pred hhhcchhe-ehhhHHHHHHHhCCCccH---HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 44555543 335667788888753332 57889999888899999999999999999999999999999999999999
Q ss_pred chhHHHH-HHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHH
Q 010848 123 DPYVLIL-GRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA 201 (499)
Q Consensus 123 s~~~li~-~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~ 201 (499)
+.+++++ .-++.|+|.|..+....+.+..++ +++|+.+.+....+..+|..+=+.+.-.+.+. .|||+.+++.+.+.
T Consensus 133 ~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~-~G~r~~~l~~~~~~ 210 (509)
T KOG2504|consen 133 SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK-YGWRGALLIFGGIS 210 (509)
T ss_pred hHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence 9977776 558999999999999999999888 55699999988888887776655544443332 26999988877766
Q ss_pred HHHHHHHHhc-cCChhHHhhcCCHHHHHHHHHHh----h--------Chh--hHH---HHHHHHHHHHHHHHh-hhcccc
Q 010848 202 IIQFVLMLFM-PESPRWLFMKSDKEKAILVLSKI----Y--------DIA--RLE---DEIDHLSAAAEEELR-KKKTVR 262 (499)
Q Consensus 202 ~l~~~~~~~l-pesp~~l~~~~~~~~a~~~~~~~----~--------~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~ 262 (499)
+-.++.-..+ |.++.- .+. .++..+..... . ..+ ..+ .+.+...+..++... ..+...
T Consensus 211 l~~~~~~~~~rp~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (509)
T KOG2504|consen 211 LNVLVAGALLRPLSPPK--KPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFL 287 (509)
T ss_pred HHHHHHHHHcCCCCcCC--Cch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhh
Confidence 5544444333 322221 000 00000000000 0 000 000 000000000000000 001111
Q ss_pred ---hhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010848 263 ---YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG 339 (499)
Q Consensus 263 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 339 (499)
..++++++.+....+. ......+++....++|.+.+..+++..+.+.++++.. ....++.++.|++.|+..
T Consensus 288 ~~~d~~ll~~~~fl~~~~~-----~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siig-i~~i~gRi~~G~laD~~~ 361 (509)
T KOG2504|consen 288 SMLDLSLLKDPKFLLLALS-----NLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIG-VSDIIGRIILGLLADKPG 361 (509)
T ss_pred hhhhHHHHcCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH-HhhhhhhhhhhhhcCccc
Confidence 2467787655443222 2222334555567788888889999888887776654 458999999999999988
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHH
Q 010848 340 RKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419 (499)
Q Consensus 340 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 419 (499)
.++...........++..+.+.. ... +..++..++...+..............|..+.+.-+.+.|+...
T Consensus 362 ~~~~~~~~~~ll~~gl~~~~~p~-~~~---------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~ 431 (509)
T KOG2504|consen 362 IRALVLFLLTLLIAGLARLFLPF-ATT---------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLL 431 (509)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-hcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHH
Confidence 54443332222222222221111 110 11222222222222223334444577889999988899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHHHHHhcc
Q 010848 420 VNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILFVP 464 (499)
Q Consensus 420 ~~~l~~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~p 464 (499)
++-++..+++.+...+.|..+ |...|+..++..+++... ++..|
T Consensus 432 ~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~-~~~~~ 476 (509)
T KOG2504|consen 432 FQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL-LLILR 476 (509)
T ss_pred HhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH-HHHhH
Confidence 999998888888777777776 667777777777766543 44444
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=168.74 Aligned_cols=339 Identities=15% Similarity=0.117 Sum_probs=213.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHH
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVY 148 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~ 148 (499)
+....|++.+...+.+++-.++.|.+.||+|+|..+++++++...++++.++.++++++++.|.+||+|.+...+.+.++
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam 183 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM 183 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcC-cccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHH
Q 010848 149 IAEASPSE-VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKA 227 (499)
Q Consensus 149 i~e~~p~~-~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a 227 (499)
++|.+|++ +|+++++..-.+...|.++||..|+.+.+.. |-+.+|.+.++..++-..+.+++-|..+ .+.
T Consensus 184 lAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~~--- 254 (464)
T KOG3764|consen 184 LADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTE-----MDP--- 254 (464)
T ss_pred HHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCccc-----cCc---
Confidence 99999997 5899999999999999999999998887754 5899999999888887777655433211 000
Q ss_pred HHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchH---HHH-H
Q 010848 228 ILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSP---TIV-Q 303 (499)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~-~ 303 (499)
+ ..++..++++++++|......... . .......+.-| .+. +
T Consensus 255 -------------------------~--~~~~~~~~~~Ll~dP~I~~~agai----~----~~n~~lafLePtlslwm~e 299 (464)
T KOG3764|consen 255 -------------------------D--STEQGTPMWSLLMDPYILLIAGAI----T----FSNSSLAFLEPTLSLWMLE 299 (464)
T ss_pred -------------------------c--ccccCccHHHHHhCchHhhhhcch----h----hccchHHHhCcccHHHHHH
Confidence 0 111233466777777654332211 1 11112222223 333 2
Q ss_pred HcCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHH
Q 010848 304 MAGFQSN-QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGL 382 (499)
Q Consensus 304 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (499)
... ++. +.+. ..++..+...+++.+.|.+.||++..+.+........++..+...-+. . ...-.|+...++
T Consensus 300 ~m~-~p~w~~G~-~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~-~-----~~~~L~vp~~~l 371 (464)
T KOG3764|consen 300 TMF-TPGWEVGL-AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA-T-----SIAQLWVPNFGL 371 (464)
T ss_pred hcc-CCCcceee-eecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh-h-----hHHHHhhhhHHH
Confidence 333 322 3332 234455568899999999999999655432211111111111111010 0 001122333333
Q ss_pred HHHHHHHhccccccccccccccCcch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHH
Q 010848 383 ALYIAFFAPGMGPVPWTLNSEVYPEQ---YRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 459 (499)
++..........|...-.. +.-..+ .-+...++......++.++++.+...+.+..|..+...+.+...++-.-++
T Consensus 372 ~~~i~~~dasl~P~l~~lv-d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 372 GFGIGLADASLIPTLGYLV-DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred HHHHHHHHHHHhhhhHHhc-chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence 3322222222222221111 111111 334445555555556666666666666666777666666666666554443
Q ss_pred H
Q 010848 460 I 460 (499)
Q Consensus 460 ~ 460 (499)
.
T Consensus 451 ~ 451 (464)
T KOG3764|consen 451 L 451 (464)
T ss_pred H
Confidence 3
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=159.59 Aligned_cols=370 Identities=14% Similarity=0.131 Sum_probs=212.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhh----hhchhHHHHHH-HHHHHHHHHHHHhcCchhHHH------------HHH
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWIND----AYGRKKATLLA-DVVFTAGAIIMAAAPDPYVLI------------LGR 131 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~D----r~Grr~~l~~~-~~l~~~~~~~~~~a~s~~~li------------~~R 131 (499)
+....+++..+..+..++.+++.|+++| |+|||+.+++. .....++..+.+++++...++ +.+
T Consensus 37 ~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~ 116 (477)
T TIGR01301 37 PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIV 116 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHH
Confidence 4455677888889999999999999999 59999998876 444445556666776643211 133
Q ss_pred HHHH-----hhhhhhhhhHHHHHhhcCCcCcc--cchhhHhHHHHHHHHHHHHHhhhhcc-----C---------CCCch
Q 010848 132 LLVG-----LGVGIASVTAPVYIAEASPSEVR--GGLVSTNVLMITSGQFLSYLVNLAFT-----E---------VPGTW 190 (499)
Q Consensus 132 ~l~G-----ig~g~~~~~~~~~i~e~~p~~~R--g~~~~~~~~~~~~G~~l~~~~~~~~~-----~---------~~~~W 190 (499)
++.| ++.....+...++++|.+|+++| +.+.+.......+|.++++.++.... + ...+-
T Consensus 117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 196 (477)
T TIGR01301 117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANL 196 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchH
Confidence 3444 47777777889999999999865 56788888888899999988776431 0 01256
Q ss_pred HHHHHhhhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcc
Q 010848 191 RWMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKS 269 (499)
Q Consensus 191 r~~f~~~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (499)
|+.|++.++..++..++. +..+|.|... .++.++. |.+ +. ++.+. ...+++++++
T Consensus 197 ~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~~---------------~~~---~~--~~~~~--~~~~~~i~~~ 252 (477)
T TIGR01301 197 KSCFLIDIILLAILTYIALSAVKENPLIG--SDDFINS---------------EAA---PP--SKHGE--EAFFGELFGA 252 (477)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchhh---------------hcc---cc--cccch--hhhHHHHHHH
Confidence 899999887776655554 5578876311 1110000 000 00 00000 0011111111
Q ss_pred -----hhhHHHHHHHHHHHHHHhccCcceehhchHHHHH--HcCCCCch-----H----HHHHHHHHHHHHHHHHHHHHH
Q 010848 270 -----KEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ--MAGFQSNQ-----L----ALLLSLAVAGTNAVGTIVGIY 333 (499)
Q Consensus 270 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~g~~~~~-----~----~~~~~~~~~~~~~~~~~~~g~ 333 (499)
+.+++..+. .+..+.+.....+|.+.++. .++.++.. . +.+..........+.+++-.+
T Consensus 253 ~~~mP~~m~~l~~v-----qffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~ 327 (477)
T TIGR01301 253 FKYLPRPVWILLLV-----TCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEK 327 (477)
T ss_pred HHHCCHHHHHHHHH-----HHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 22223344444444444443 23332211 1 222333333344556666778
Q ss_pred HhhccCC-hHHHHHhhHHHHHHHHHHHHHHhhCCC--------C--CCCchhhHHHHHHHHHHHHHHhcccccccccccc
Q 010848 334 LIDHFGR-KKLALSSLAGVIISLVLLSWAFISGSS--------A--SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS 402 (499)
Q Consensus 334 l~dr~gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (499)
+.+|+|+ |+....+.+...++++...+......+ . ..+....+..+..+.. .++.-.....++|++.+
T Consensus 328 l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~Gi~~A~~~siPfal~s 406 (477)
T TIGR01301 328 LCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI-LGIPLAITYSIPFALAS 406 (477)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH-hhHHHHHHHHHhHHHHH
Confidence 8899984 677677766666666665543221000 0 0000001222222211 11222234568889999
Q ss_pred ccCcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 403 EVYPEQ--YRGICGGMSATVNWISNLIVAQTFLTVAELVG--TGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 403 e~~p~~--~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
+..|++ ..|...|+.+.+-.+.+.+.....+.+.+..| ....+.+-++.++++.+.+.+.+|+++.
T Consensus 407 ~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 407 IRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 998854 44888899998888888777766666555554 3456667777777888888889999865
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-16 Score=159.53 Aligned_cols=146 Identities=19% Similarity=0.322 Sum_probs=111.8
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAP-DPYVLILGRL 132 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~a~-s~~~li~~R~ 132 (499)
...++++++|....+ .+++.+.+........+++|+++|| +|||+++.++.++++++..++++++ +...+.+.|+
T Consensus 44 l~~yl~~~lg~s~~~---a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~ 120 (500)
T PRK09584 44 MAVYLVKQLGMSEAD---SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMA 120 (500)
T ss_pred HHHHHHHHcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334556777653322 2445555554444555789999999 5999999999999999999998875 4567778999
Q ss_pred HHHhhhhhhhhhHHHHHhhcCCcCc--ccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHH
Q 010848 133 LVGLGVGIASVTAPVYIAEASPSEV--RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQ 204 (499)
Q Consensus 133 l~Gig~g~~~~~~~~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~ 204 (499)
++|+|.|...+...++++|++|+++ |+...+.......+|..+++.+++.+.+.. +||+.|++.++..++.
T Consensus 121 l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 121 TIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Confidence 9999999999999999999998754 445677777888999999998887776543 6999999987644443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-16 Score=143.85 Aligned_cols=359 Identities=21% Similarity=0.247 Sum_probs=244.5
Q ss_pred HhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh
Q 010848 41 GGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA 120 (499)
Q Consensus 41 ~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~ 120 (499)
.++.-=-..+.+++.++.|.+|++. +....++++++..+...+.+++..+++.|+|.++.+..++++.++++++-..
T Consensus 20 ia~NLR~~itsvgPLL~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~ 96 (395)
T COG2807 20 IAFNLRPAITSVGPLLDEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL 96 (395)
T ss_pred HHhccchhhhhhhhhHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 4444333446788889999999875 3344688999999999999999999999999999999999999999998877
Q ss_pred cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHH
Q 010848 121 APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVP 200 (499)
Q Consensus 121 a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~ 200 (499)
. +...++.+-.+.|.|.+...+..+..+.+.+|+| -+.+++.+.....+|..+++.+...+.+..++||....+=+.+
T Consensus 97 ~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~ 174 (395)
T COG2807 97 G-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALL 174 (395)
T ss_pred c-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHH
Confidence 7 7788999999999999999999999999999766 6889999999999999999888777776656799988888888
Q ss_pred HHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHH
Q 010848 201 AIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGA 280 (499)
Q Consensus 201 ~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (499)
+++.++.++ |...|. +. ...+.+..+...++++|.-|...+.
T Consensus 175 allAl~~Wl--Pq~~r~-----~~-----------------------------~~~~~~~~~~~~vw~~~~aW~vtLf-- 216 (395)
T COG2807 175 ALLALLIWL--PQALRE-----QA-----------------------------ASIATKLVSVRKVWRSPLAWQVTLF-- 216 (395)
T ss_pred HHHHHHHHh--hhcccc-----cc-----------------------------cccccccccccccccCchhHHHHHH--
Confidence 888777754 322111 00 0011112233457888765554332
Q ss_pred HHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHHHHHH
Q 010848 281 GLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLS 359 (499)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~ 359 (499)
+-.|-..++....|+|.++.+.|.+..+.+.+.++... ...+.++....+.+|. ++|+.......++.++..-+.
T Consensus 217 ---mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l-~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~ 292 (395)
T COG2807 217 ---MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQL-AQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL 292 (395)
T ss_pred ---HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 12222234566678999999999998887777766654 4788888888999875 555555444444444433332
Q ss_pred HHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccccccccccccc-CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 360 WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEV-YPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL 438 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~ 438 (499)
+. .. .....|..+.++.- .+..++.......- -.++.-+.-.|++...+++.+..++..++.+.|.
T Consensus 293 ~~--P~-----~~~~lw~~llG~G~------G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa 359 (395)
T COG2807 293 LA--PG-----QLPILWALLLGLGQ------GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA 359 (395)
T ss_pred Hh--hh-----hHHHHHHHHHhCcc------chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh
Confidence 21 11 11122222222211 11122222333332 2344455667788888888888999999998887
Q ss_pred cC-CchhhHHHHHHHHHHHHHH
Q 010848 439 VG-TGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 439 ~~-~~~~f~~~~~~~~~~~~~~ 459 (499)
.| |+.....++...++..+..
T Consensus 360 ~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 360 TGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred cCChHHHHHHHHHHHHHHHHHH
Confidence 65 4445555555555444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=161.77 Aligned_cols=371 Identities=10% Similarity=0.005 Sum_probs=209.7
Q ss_pred HHhhhhhhchhcchhhH-HhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHHHHHHHHH-
Q 010848 40 IGGLLFGYDTGVISGAL-LYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYG-----RKKATLLADVVFT- 112 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~-~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~G-----rr~~l~~~~~l~~- 112 (499)
...+..|+- ..+..++ |.+.++++. +....+...+...+...+-.+ +|+++||++ ||+.++++.++..
T Consensus 33 ~~y~~qGl~-~l~~~~~~~~l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~ 107 (468)
T TIGR00788 33 QVLFVKGIA-GLMRLPLSPMLTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSA 107 (468)
T ss_pred HHHHHhhHH-HHhhhhhhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence 355778887 5555444 445556664 333345677888888888665 999999998 7887788777763
Q ss_pred HHHHHHHhcCchhHHH-HHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchh---hHhHHHHHHHHHHHHHhhhhccCCCC
Q 010848 113 AGAIIMAAAPDPYVLI-LGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLV---STNVLMITSGQFLSYLVNLAFTEVPG 188 (499)
Q Consensus 113 ~~~~~~~~a~s~~~li-~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~---~~~~~~~~~G~~l~~~~~~~~~~~~~ 188 (499)
++....+..++...+. +.+++.+++.+..-+....+..|..+ |++.... +........|.++++.+++.+.+..
T Consensus 108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~- 185 (468)
T TIGR00788 108 ILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT- 185 (468)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3323333335544444 48999999999999999999999998 5444332 2222333478888887777665432
Q ss_pred chHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhc
Q 010848 189 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFK 268 (499)
Q Consensus 189 ~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (499)
+||..|++.+...++..+...++||++.....+.++++..... ...... .+. .++......+.++
T Consensus 186 ~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~--~~~~~~~l~~~l~ 250 (468)
T TIGR00788 186 LTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMA---------LLTLGV----LAN--VKVQILGLRGAIQ 250 (468)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhh---------hhhhhH----HHH--HHHHHHHHHHHHh
Confidence 5999999988777666555677888642111110000000000 000000 000 0000112333456
Q ss_pred chhhHHHHHHHHHHHHHHhccCcc-eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHh
Q 010848 269 SKEIRLAFLAGAGLQAFQQFTGIN-TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS 347 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 347 (499)
+|.+++.+...+.. +....+.. ...++.+ +..|+++...+....... ++..++..+.+++.+|++.|+++..+
T Consensus 251 ~~~i~~~l~fifl~--~~~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~-v~~i~g~~~~~~~~~~~~~r~~l~~~ 324 (468)
T TIGR00788 251 LLEIAKPLIFIFLS--YANLPGASGSVFCATT---QCLPGGPSFSGMSKVVGN-LGSLCGVGGYDRFLKTFPYRLLFGVT 324 (468)
T ss_pred cHHHHHHHHHHHHH--HhhcCCCCceeEEEEc---ccCCCCcchhhhHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 66665533322210 11111111 1111222 357888888776665544 55788888999999999999887766
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHH
Q 010848 348 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI 427 (499)
Q Consensus 348 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i 427 (499)
.....++........ ...+........+.......+-........ .....+.++..|++.+++..++..++..++..+
T Consensus 325 ~~l~~~~~~~~~~l~-~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~-~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v 402 (468)
T TIGR00788 325 TLLYTLSSLFDLILV-KRWNLAFGISDEVFVLGDSIIAEVLAQLKF-MPFLVLLARLCPSGCESSVFALLASILHLGSSV 402 (468)
T ss_pred HHHHHHHHhCceeee-eccccccCCCCeeeeeehhHHHHHHHHHHH-ccHHHHHHHhCCCCceehHHHHHHHHHHHHHHH
Confidence 555444432211100 000000000000000110111111111111 223567789999999999999999999999988
Q ss_pred HHHHHHHHHHHcC
Q 010848 428 VAQTFLTVAELVG 440 (499)
Q Consensus 428 ~~~~~~~~~~~~~ 440 (499)
++.....+.+..|
T Consensus 403 ~~~~gg~l~~~~g 415 (468)
T TIGR00788 403 SGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHcC
Confidence 8877777777666
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-15 Score=147.40 Aligned_cols=367 Identities=16% Similarity=0.161 Sum_probs=216.6
Q ss_pred hhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010848 54 GALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYG-RKKATLLADVVFTAGAIIMAAAPDPYVLILGRL 132 (499)
Q Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~G-rr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~ 132 (499)
...|++.-.++..+-+..+.|.+.+...+..+++++++|+++||++ +|+.+.++.++.++........++++.+++.-+
T Consensus 20 ~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~ 99 (400)
T PF03825_consen 20 AFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIML 99 (400)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3445554444444556677899999999999999999999999986 567777777777776666777889988888888
Q ss_pred HHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHh-hhhccCC--CCchHHHHHhhhHHHHHHHHHHH
Q 010848 133 LVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLV-NLAFTEV--PGTWRWMLGVSAVPAIIQFVLML 209 (499)
Q Consensus 133 l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~-~~~~~~~--~~~Wr~~f~~~~~~~~l~~~~~~ 209 (499)
+..+......|...++..+...+++ +-.+..-.+.++|..++... ...+... ..+..+.+++.+...++.....+
T Consensus 100 l~~~~~~p~~pl~dsi~~~~~~~~~--~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l 177 (400)
T PF03825_consen 100 LFSFFFSPTMPLSDSIALSYLGDRG--KDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL 177 (400)
T ss_pred HHHHHHccHHHHHHHHHHHHccccc--CCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH
Confidence 8888888888899888888876432 12223333344444444221 1111111 01233456666665555555566
Q ss_pred hccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhcc
Q 010848 210 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 289 (499)
Q Consensus 210 ~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (499)
.+|+.|.. +..++ +.+++...+..+++|+|++...++.......
T Consensus 178 ~lp~~~~~---~~~~~----------------------------~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~----- 221 (400)
T PF03825_consen 178 FLPKTPPK---RSAKE----------------------------SVKKLLGLDALKLLKNPRFLVFLLAAFLIGI----- 221 (400)
T ss_pred hCCCCccc---cccCC----------------------------CcccccchHHHHHhcCccHHHHHHHHHHHHH-----
Confidence 78887721 00000 0001111123467888876654444332222
Q ss_pred CcceehhchHHHHHHcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCC
Q 010848 290 GINTVMYYSPTIVQMAG-FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA 368 (499)
Q Consensus 290 ~~~~~~~~~p~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 368 (499)
.......|.+.++++.| .+....+...++ ...+.++.-...+++..|+|.|+++..+....++=..+.... .++
T Consensus 222 ~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l-~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~--~~~-- 296 (400)
T PF03825_consen 222 SHAAYYTFFSIYLQELGGYSGSTIGILWAL-GVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF--SDP-- 296 (400)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh--cCC--
Confidence 12233456677888887 444444444433 334577888889999999999998877665544433333321 010
Q ss_pred CCCchhhHH-HHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCch---
Q 010848 369 SSSGVYGWI-AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN-WISNLIVAQTFLTVAELVGTGA--- 443 (499)
Q Consensus 369 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~l~~~i~~~~~~~~~~~~~~~~--- 443 (499)
....+. .+....+-...++ ........++.+..|++.|+++.++..... -++..++..+.+.+.|..+.+.
T Consensus 297 ---~~~~~~~~~l~q~lhG~tf~-~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~ 372 (400)
T PF03825_consen 297 ---WPFIVALQLLGQLLHGLTFG-LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFD 372 (400)
T ss_pred ---cHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhh
Confidence 001011 1110000111111 111233467889999999999999887764 4677777778888887766543
Q ss_pred ---hhHHHHHHHHHHHHHHHHhcccCC
Q 010848 444 ---TFLILAGIAVLAVVFVILFVPETQ 467 (499)
Q Consensus 444 ---~f~~~~~~~~~~~~~~~~~~pet~ 467 (499)
.+.+.++..++..+..+++.||++
T Consensus 373 ~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 373 WSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 345555555555555555556553
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=154.51 Aligned_cols=357 Identities=13% Similarity=0.080 Sum_probs=187.3
Q ss_pred HHhhhhhhchhcchhhH-HhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhh----hhchh-HHHHHHHHHHHH
Q 010848 40 IGGLLFGYDTGVISGAL-LYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWIND----AYGRK-KATLLADVVFTA 113 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~-~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~D----r~Grr-~~l~~~~~l~~~ 113 (499)
+|.+...+-...++.-+ .+..+.+ +.+....+.+..+..+--++..|+.|.++| |+||| +-++++....++
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~---Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i 89 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVV---GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSV 89 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHH
Confidence 34444444444444333 3334333 345566677888888888899999999999 66995 555667766666
Q ss_pred HHHHHHhcCc------hhHHHHHHHHHHhhhhhhhhhHHHHHhhcC-CcCcccchhhHhHHHHHHHHHHHHHhhhhc---
Q 010848 114 GAIIMAAAPD------PYVLILGRLLVGLGVGIASVTAPVYIAEAS-PSEVRGGLVSTNVLMITSGQFLSYLVNLAF--- 183 (499)
Q Consensus 114 ~~~~~~~a~s------~~~li~~R~l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~--- 183 (499)
+..+.-..++ +..+++.-++.+++.....+...++..|.. ++++|.+..+.-..+..+|..+.+.+...+
T Consensus 90 ~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~ 169 (473)
T PRK10429 90 VLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY 169 (473)
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544332 234555666777888888888888999998 578999887775555555544443322211
Q ss_pred -c--CCCCchHHHHHhhhHHHHHHHHHHH-hccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhc
Q 010848 184 -T--EVPGTWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK 259 (499)
Q Consensus 184 -~--~~~~~Wr~~f~~~~~~~~l~~~~~~-~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (499)
. ....+|++...+.++..++..+..+ ..+|.+.. .+.++ +++.+.+-
T Consensus 170 ~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~ 220 (473)
T PRK10429 170 VGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQVS-------------------------AEGSHLTL 220 (473)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc----ccccc-------------------------ccccCCCH
Confidence 1 1112578777776665555444433 35664311 00000 00000000
Q ss_pred ccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010848 260 TVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG 339 (499)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 339 (499)
....+.+++||.++..+...+......+.. ..+.+++.+....+....+.+. .......+++.++.+++.||+|
T Consensus 221 ~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~-----~~~~~y~~~y~~~~~~~~~~~~-~~~~i~~ii~~~~~~~l~~r~g 294 (473)
T PRK10429 221 KDIVALIYKNDQLSCLLGMALAYNIASNII-----NGFAIYYFTYVIGDADLFPYYL-SYAGAANLVTLILFPRLVKSLS 294 (473)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-----hhheeeEEEEECCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcC
Confidence 011233556766555444333222221111 1122223232222333333333 2333446788888899999999
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCc-----c--hhhhh
Q 010848 340 RKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYP-----E--QYRGI 412 (499)
Q Consensus 340 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~--~~r~~ 412 (499)
+|+.+..+....+++.+.+......... . .+...+...+. ...........+++.+|..+ + +..|.
T Consensus 295 kk~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~i~~~l~-g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~ 367 (473)
T PRK10429 295 RRILWAGASIFPVLSCGVLLLMGLAAPH----N--ALLIVIAGILL-NIGTALFWVLQVIMVADTVDYGEYKLGIRCESI 367 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCch----h--HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhHhcCccchhH
Confidence 9998876665444443333221111111 0 11111111111 11111223455667777754 2 23445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010848 413 CGGMSATVNWISNLIVAQTFLTVAELVGT 441 (499)
Q Consensus 413 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~~ 441 (499)
..+.......++..+++.+.+.+.+..|+
T Consensus 368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66777777778887877777776665554
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-14 Score=143.15 Aligned_cols=362 Identities=20% Similarity=0.237 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH-HHHHHHHHHHHHHhc-Cc-hhHHHHHHHHHHhhhhhhhhhHHHHH
Q 010848 73 QETIVSMALVGAIVGAASGGWINDAYGRKKATLL-ADVVFTAGAIIMAAA-PD-PYVLILGRLLVGLGVGIASVTAPVYI 149 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~-~~~l~~~~~~~~~~a-~s-~~~li~~R~l~Gig~g~~~~~~~~~i 149 (499)
.++..++..+-..+-.|+.|-++|+-|+||.++. ...+..+++.+..+. ++ ++...+.-++.-++.+...+...+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778888888899999999999998876544 444455566665554 33 33333444444467788888899999
Q ss_pred hhcCCcCcc--------------------------cchhhHhHHHHHHHHHHHHHhhhhccCCCC-------chHHHHHh
Q 010848 150 AEASPSEVR--------------------------GGLVSTNVLMITSGQFLSYLVNLAFTEVPG-------TWRWMLGV 196 (499)
Q Consensus 150 ~e~~p~~~R--------------------------g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~-------~Wr~~f~~ 196 (499)
.|..+++.+ ++..+.......+|.++..++...+....+ .-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999988 888888777777777776665544322111 13777777
Q ss_pred hhHHH-HHHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHH
Q 010848 197 SAVPA-IIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLA 275 (499)
Q Consensus 197 ~~~~~-~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (499)
.++-- +..+...+++||.|+....+....-.. ....++ ....+++.+.|+..+-
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~l------------~~t~k~~~~~~~~~~f 286 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR-------------FGFKRL------------WRTFKEIRKLRQLFLF 286 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH-------------HHHHHH------------HHHHHHHHhChHHHHH
Confidence 66543 344555667788765210000000000 000000 0011222233333332
Q ss_pred HHHHHHHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCh--HHHHHhhHHHH
Q 010848 276 FLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK--KLALSSLAGVI 352 (499)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~ 352 (499)
++. .+....+.+.+..+...|.+ +.|++..+...+. +.......+|+++.+++.||+|.| +++........
T Consensus 287 Lia-----~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~-l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 287 LIA-----YFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFG-LVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 222 12222344555555555554 7888877655443 444455799999999999999999 77655544332
Q ss_pred HHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 010848 353 ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF 432 (499)
Q Consensus 353 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~ 432 (499)
+..+.-.+............+. +..+.+..+.+..+..+..-++.+|+.|++.++...|+....+...+++++.++
T Consensus 361 ~i~~~g~~G~~~~~~g~~~~~~----f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 361 IIPLYGLFGFWPSFFGLKSPWE----FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHHHHhhhcccCcccHHH----HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111111111101111111 222233333444455677778899999999999999999999999999999999
Q ss_pred HHHHHHcCC-chhhHHHHHHHHHHHHHHHHhcccCCCCC
Q 010848 433 LTVAELVGT-GATFLILAGIAVLAVVFVILFVPETQGLT 470 (499)
Q Consensus 433 ~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~pet~~~~ 470 (499)
..+.+..+. +..+....++.+++.+ .+.+.++.|++.
T Consensus 437 g~i~~~tg~~r~g~~~l~~lf~~gl~-ll~~v~~~~g~~ 474 (477)
T PF11700_consen 437 GLITDATGSQRYGFLFLLVLFLIGLI-LLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHH-HHhhccchhhhh
Confidence 999888874 4555555555555544 446666666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-15 Score=150.41 Aligned_cols=333 Identities=15% Similarity=0.152 Sum_probs=184.4
Q ss_pred HHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHHHHHHHhcCc------h
Q 010848 56 LLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA----YGRKK-ATLLADVVFTAGAIIMAAAPD------P 124 (499)
Q Consensus 56 ~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr----~Grr~-~l~~~~~l~~~~~~~~~~a~s------~ 124 (499)
.++..++++ .+....+.+.++..+.-.+..|+.|+++|| +|||| .++++....+++..+....|+ .
T Consensus 33 ~~~~t~~~g---ls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 33 AYFYTDVFG---LSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 344455554 355567888999999999999999999999 78754 455676777777766555654 3
Q ss_pred hHHHHHHHHHHhhhhhhhhhHHHHHhhcC-CcCcccchhhHhHHHHHHHHHHHHHhhhh----ccC--CCCchHHHHHhh
Q 010848 125 YVLILGRLLVGLGVGIASVTAPVYIAEAS-PSEVRGGLVSTNVLMITSGQFLSYLVNLA----FTE--VPGTWRWMLGVS 197 (499)
Q Consensus 125 ~~li~~R~l~Gig~g~~~~~~~~~i~e~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~~--~~~~Wr~~f~~~ 197 (499)
..+++.-++.+.+.........++.+|+. ++++|++..+.-.....+|..+++.+... ... ...+|+..+.+.
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~ 189 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM 189 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 45566666777766666666778999988 55789887777666666666665543222 111 123688888777
Q ss_pred hHHHHHHHHHHH-hccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHH
Q 010848 198 AVPAIIQFVLML-FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAF 276 (499)
Q Consensus 198 ~~~~~l~~~~~~-~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (499)
++.+++..+..+ ..+|.++. .+ ++ +.+.....++++++|+++...
T Consensus 190 ~ii~~v~~~~~~~~~~e~~~~----~~-~~-----------------------------~~~~~~~~~~~~~n~~~~~l~ 235 (444)
T PRK09669 190 GLLGVVLFFCCFFMTKERYTP----EV-DN-----------------------------SSSVWKDLKLLLGNSQWRIMF 235 (444)
T ss_pred HHHHHHHHHHHhCCeEEecCC----CC-cC-----------------------------CCCHHHHHHHHhCCchHHHHH
Confidence 766655544433 34543210 00 00 000011234556777766544
Q ss_pred HHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHH
Q 010848 277 LAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLV 356 (499)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~ 356 (499)
...+......+.... ...+|..+.. ...+.............+++.++.+++.||+|+|+.+..+.....+...
T Consensus 236 ~~~~~~~~~~~~~~~-~~~y~~~~~~-----~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 236 IFNVVLLTAVVTRGG-ATLYYVNYVL-----LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHHHhh-hhheeeeeec-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 332222121111111 1112222211 1122222222233344567888889999999999988766544333222
Q ss_pred HHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcc-------hhhhhHHHHHHHHHHHHHHHHH
Q 010848 357 LLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-------QYRGICGGMSATVNWISNLIVA 429 (499)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~l~~~i~~ 429 (499)
.+.. . ..+ . .+...+...+ .........+..+++.+|..+. +..+...+.......++..+++
T Consensus 310 ~~~~--~-~~~----~--~~~~~~~~~i-~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~ 379 (444)
T PRK09669 310 LIFF--I-PPS----N--VWLIFALNIL-FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGG 379 (444)
T ss_pred HHHH--h-Ccc----h--HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHH
Confidence 1111 1 111 0 1111121111 1222223346667788777652 2345556777777788888888
Q ss_pred HHHHHHHHHcCC
Q 010848 430 QTFLTVAELVGT 441 (499)
Q Consensus 430 ~~~~~~~~~~~~ 441 (499)
.+...+.+..|+
T Consensus 380 ~i~g~ll~~~Gy 391 (444)
T PRK09669 380 AVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHcCC
Confidence 777777666655
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-13 Score=137.21 Aligned_cols=146 Identities=19% Similarity=0.279 Sum_probs=109.8
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Q 010848 58 YIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY-GRKKATLLADVVFTAGAIIMAAAP-DPYVLILGRLLVG 135 (499)
Q Consensus 58 ~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~~~a~-s~~~li~~R~l~G 135 (499)
++.++++.. ....+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.+..+ +...+.+.-.+.+
T Consensus 35 yL~~~lgls---~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~ 111 (493)
T PRK15462 35 YLTNQLKYD---DNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIV 111 (493)
T ss_pred HHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 345555442 23345678888888899999999999999 999999999999999987776543 2233444445555
Q ss_pred hhhhhhhhhHHHHHhhcCCcC--cccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH
Q 010848 136 LGVGIASVTAPVYIAEASPSE--VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 136 ig~g~~~~~~~~~i~e~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~ 207 (499)
+|.|...+...++++|.+|++ +|....+.......+|..+++.+...+.+.. +||+.|.+.++..++.++.
T Consensus 112 iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 112 CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHH
Confidence 667777777889999999986 6888888888888899999999887775533 6999999877644443333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=154.33 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHhhhhhhhhhHHHHH
Q 010848 73 QETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII---MAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~---~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i 149 (499)
..+..+...++..++.++.|+++||+|||+++..+.++..+++.. ...+++...++++|++.|++.+........++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 367 (490)
T PRK10642 288 GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTL 367 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999999999988877655444332 23345677888899999998887777788899
Q ss_pred hhcCCcCcccchhhH-hHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhc-----CC
Q 010848 150 AEASPSEVRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMK-----SD 223 (499)
Q Consensus 150 ~e~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~-----~~ 223 (499)
.|.+|++.||...+. +......| .+++.+...+.+..++|+.+++...+++++.++..+++||||+|+.++ ++
T Consensus 368 ~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~ 446 (490)
T PRK10642 368 PAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASD 446 (490)
T ss_pred HHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccc
Confidence 999999999988875 55554444 444444433333234588887777777777777777889999998865 88
Q ss_pred HHHHHHHHHHhhC
Q 010848 224 KEKAILVLSKIYD 236 (499)
Q Consensus 224 ~~~a~~~~~~~~~ 236 (499)
.||+++.+.+++.
T Consensus 447 ~~~a~~~l~~~~~ 459 (490)
T PRK10642 447 IQEAKEILVEHYD 459 (490)
T ss_pred hhhHHHHhhcccc
Confidence 8999999988863
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=144.70 Aligned_cols=325 Identities=17% Similarity=0.269 Sum_probs=198.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhh----hhchhHHHH-HHHHHHHHHHHHHHhc-C-------chhHHHHHHHHH
Q 010848 68 QSSFLQETIVSMALVGAIVGAASGGWIND----AYGRKKATL-LADVVFTAGAIIMAAA-P-------DPYVLILGRLLV 134 (499)
Q Consensus 68 ~~~~~~~~~~s~~~lg~~ig~~~~g~l~D----r~Grr~~l~-~~~~l~~~~~~~~~~a-~-------s~~~li~~R~l~ 134 (499)
.++...+.+..+..+--++-.|+.|.++| |+||||.++ ++..+..++..+.... | ....+.+.-++.
T Consensus 34 l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~ 113 (428)
T PF13347_consen 34 LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILF 113 (428)
T ss_pred CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHH
Confidence 34455666777777777778889999999 899887654 5667777776666655 4 123456777777
Q ss_pred HhhhhhhhhhHHHHHhhcCCc-CcccchhhHhHHHHHHHHHHHHHhhhhccCC----C--CchHHHHHhhhHHHHHHHHH
Q 010848 135 GLGVGIASVTAPVYIAEASPS-EVRGGLVSTNVLMITSGQFLSYLVNLAFTEV----P--GTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 135 Gig~g~~~~~~~~~i~e~~p~-~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~----~--~~Wr~~f~~~~~~~~l~~~~ 207 (499)
.++.........++..|..++ ++|.+..+.-..+..+|.++...+...+... . .+|++..++.+++.++..++
T Consensus 114 ~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i 193 (428)
T PF13347_consen 114 DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLI 193 (428)
T ss_pred HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhh
Confidence 888888888889999999985 6899988887777777776555444433221 1 16999988888777765555
Q ss_pred H-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHH
Q 010848 208 M-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ 286 (499)
Q Consensus 208 ~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (499)
. +..+|.++ +.+ +++.+.+-....++++++|+++.........
T Consensus 194 ~~~~~ke~~~------~~~--------------------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~---- 237 (428)
T PF13347_consen 194 TFFFVKERSV------EVT--------------------------EQEKKISLRDSLRSLFRNRPFRILLLAFFLQ---- 237 (428)
T ss_pred hhheeeeccc------ccc--------------------------ccccccccccchhhhcccchHHHHHHHHHHH----
Confidence 4 44576111 000 0001111123456778888776654443222
Q ss_pred hccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCC
Q 010848 287 QFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGS 366 (499)
Q Consensus 287 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (499)
..+......+.+++.+..-.++...+... ....+...++.++.+++.||+|+|+.+..+.....++.+.+.+... .
T Consensus 238 -~~~~~~~~~~~~y~~~~vl~~~~~~~~~~-~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--~ 313 (428)
T PF13347_consen 238 -WLAFALMNTFLPYYFTYVLGNEGLISIFM-LIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--G 313 (428)
T ss_pred -HhhhhhhhhHHHHHHHHHhcCchhhHHHH-HHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--h
Confidence 12222222334555554322223333333 3344457888899999999999999988877766666555443321 1
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcch-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010848 367 SASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ-------YRGICGGMSATVNWISNLIVAQTFLTVAELV 439 (499)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~ 439 (499)
+ .+.... ..+.............+++.+|..+.+ ..|...|+......++..++..+...+.+..
T Consensus 314 ~-------~~~~~i-~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 314 S-------PWLVLI-LFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred h-------HHHHHH-HHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 1 111111 222222333344567788888887643 3466667777777777777777666665544
Q ss_pred C
Q 010848 440 G 440 (499)
Q Consensus 440 ~ 440 (499)
|
T Consensus 386 G 386 (428)
T PF13347_consen 386 G 386 (428)
T ss_pred C
Confidence 4
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-14 Score=141.65 Aligned_cols=331 Identities=11% Similarity=0.082 Sum_probs=173.1
Q ss_pred HhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh----chhHHH-HHHHHHHHHHHHHHHhcC-----ch--
Q 010848 57 LYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY----GRKKAT-LLADVVFTAGAIIMAAAP-----DP-- 124 (499)
Q Consensus 57 ~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~----Grr~~l-~~~~~l~~~~~~~~~~a~-----s~-- 124 (499)
++.++..+ .+....+.+.+...+...+..++.|+++||. ||||.. .++.+...+.+.+....+ +.
T Consensus 33 ~y~~~~~g---l~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (448)
T PRK09848 33 SYYTDVAG---VGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV 109 (448)
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence 34555544 3455678899999999999999999999996 777755 555554554444432222 21
Q ss_pred hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCc-CcccchhhHhHHH-----HHHHHHHHHHhhhhccCC-CCchHHHHHhh
Q 010848 125 YVLILGRLLVGLGVGIASVTAPVYIAEASPS-EVRGGLVSTNVLM-----ITSGQFLSYLVNLAFTEV-PGTWRWMLGVS 197 (499)
Q Consensus 125 ~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~-~~Rg~~~~~~~~~-----~~~G~~l~~~~~~~~~~~-~~~Wr~~f~~~ 197 (499)
..+++.-++.+++.+...+...++..|..++ ++|.+..+.-..+ ...+..+++.++...... ..+|.....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~ 189 (448)
T PRK09848 110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL 189 (448)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 2234455677888887777777777776654 6787665443322 234445555554332111 11222211222
Q ss_pred hHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHH
Q 010848 198 AVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAF 276 (499)
Q Consensus 198 ~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (499)
++.+++..++ ....||++.. +.+ +.+-...+++++++|++....
T Consensus 190 ~v~~~~~~~~~~~~~~e~~~~---~~~--------------------------------~~~~~~~~~~l~~n~~f~~~~ 234 (448)
T PRK09848 190 AIAGMVLYFICFKSTRENVVR---IVA--------------------------------QPSLKISLQTLKRNRPLFMLC 234 (448)
T ss_pred HHHHHHHHHHHHcCcEeccCC---Ccc--------------------------------CCCHHHHHHHHhCCchHHHHH
Confidence 2223222222 2234554320 000 000011244577788766544
Q ss_pred HHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHH
Q 010848 277 LAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISL 355 (499)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~ 355 (499)
+........ ........|++.+. .|.+ ...+.+.........+++.++.+++.||+|+|+.+..+.....++.
T Consensus 235 ~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~ 308 (448)
T PRK09848 235 IGALCVLIS-----TFAVSASSLFYVRYVLNDT-GLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGY 308 (448)
T ss_pred HHHHHHHHH-----HHHHhhhheeeEeeecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 333222111 11111233444443 3433 3333333333334457788889999999999998887766555554
Q ss_pred HHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcch-------hhhhHHHHHHHHHHHHHHHH
Q 010848 356 VLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ-------YRGICGGMSATVNWISNLIV 428 (499)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~l~~~i~ 428 (499)
+.+.+ . ... . .+.......+... ......+..++..+|..|.+ .+|...|+.+....++..++
T Consensus 309 ~~~~~--~-~~~---~---~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig 378 (448)
T PRK09848 309 LLFFW--V-SVW---S---LPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG 378 (448)
T ss_pred HHHHH--c-Cch---h---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence 44332 1 110 0 1111111111111 11112234455666666543 45888888888888888888
Q ss_pred HHHHHHHHHHcCC
Q 010848 429 AQTFLTVAELVGT 441 (499)
Q Consensus 429 ~~~~~~~~~~~~~ 441 (499)
+.+...+.+..|+
T Consensus 379 ~~i~g~~l~~~G~ 391 (448)
T PRK09848 379 GSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHcCC
Confidence 7777766655554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-13 Score=138.78 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=98.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHH-HHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHh
Q 010848 68 QSSFLQETIVSMALVGAIVGAASGGWINDA----YGRKKATL-LADVVFTAGAIIMAAAPD------PYVLILGRLLVGL 136 (499)
Q Consensus 68 ~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr----~Grr~~l~-~~~~l~~~~~~~~~~a~s------~~~li~~R~l~Gi 136 (499)
.++...+.+..+.-+-=++..|+.|.++|| +|||+..+ ++....+++..++-..|+ ...+.+.-++..+
T Consensus 42 l~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~ 121 (460)
T PRK11462 42 IPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL 121 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence 344445666666666667888999999996 79876654 565677777766655553 3345566667788
Q ss_pred hhhhhhhhHHHHHhhcCC-cCcccchhhHhHHHHHHHHHHHHHhhhhccC------CCCchHHHHHhhhHHHHHHHHHHH
Q 010848 137 GVGIASVTAPVYIAEASP-SEVRGGLVSTNVLMITSGQFLSYLVNLAFTE------VPGTWRWMLGVSAVPAIIQFVLML 209 (499)
Q Consensus 137 g~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~------~~~~Wr~~f~~~~~~~~l~~~~~~ 209 (499)
+.......-.++.+|..+ +|+|.+..+.-..+..+|..+++.+...+.. ...+|+....+.++++++...+.+
T Consensus 122 ~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 122 LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999987 5789999988888878777666555332211 112588777666666555444433
Q ss_pred -hccCC
Q 010848 210 -FMPES 214 (499)
Q Consensus 210 -~lpes 214 (499)
..+|.
T Consensus 202 ~~~kE~ 207 (460)
T PRK11462 202 FTTKER 207 (460)
T ss_pred hcceec
Confidence 34553
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-14 Score=136.64 Aligned_cols=274 Identities=14% Similarity=0.136 Sum_probs=169.0
Q ss_pred HhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC------------
Q 010848 119 AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV------------ 186 (499)
Q Consensus 119 ~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~------------ 186 (499)
+...++..++++-++.|.|.+...+....|+++..|+|++.+.++..+....+|.+++|+++..+...
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999988755421
Q ss_pred ---CCchHHHHHhhhHHHHHHHHHHHh--ccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhccc
Q 010848 187 ---PGTWRWMLGVSAVPAIIQFVLMLF--MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV 261 (499)
Q Consensus 187 ---~~~Wr~~f~~~~~~~~l~~~~~~~--lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (499)
...||++|++.+...++..+.+.+ +||.+. ++.++. . + ++ ..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~-----------------------~-~---~~-~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV-----------------------S-S---GD-TT 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc-----------------------c-c---cc-cc
Confidence 025999999665544443334333 455321 000000 0 0 00 00
Q ss_pred chhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010848 262 RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM---AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF 338 (499)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 338 (499)
+.++.+++|+.+...+. .+.....-.....|.+.|+.+ .|.++.+.+.... ...++..+|+++++++.||+
T Consensus 132 ~~~~~~~~~~~~l~~~~-----~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s-~~~~~~~iGr~~~~~l~~r~ 205 (310)
T TIGR01272 132 QKTSAFQFTHLVLGALG-----IFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTA-YTWGGAMVGRFIGSAVMPMI 205 (310)
T ss_pred chhhHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 11123444444432222 111111223344567777754 3677666665544 44456789999999999999
Q ss_pred CChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHH
Q 010848 339 GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA 418 (499)
Q Consensus 339 grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 418 (499)
++|+.+..+.....+...+... ... .... ..+. ...++.....|...+...+.+|++ .+.+.++.
T Consensus 206 g~~~~l~~~~~l~~~~~~l~~~----~~~-----~~~~---~~~~-l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~- 270 (310)
T TIGR01272 206 SQGRYLAFNAFLAVLLSIGAAL----THG-----YVAM---WFVL-ALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL- 270 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH----cCC-----HHHH---HHHH-HHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-
Confidence 9998876555444443322211 110 0111 1111 122333344566666777777764 34555664
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhH
Q 010848 419 TVNWISNLIVAQTFLTVAELVGTGATFL 446 (499)
Q Consensus 419 ~~~~l~~~i~~~~~~~~~~~~~~~~~f~ 446 (499)
.++.+++.+.+.+.+.+.|..+.+..|+
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 5677888888888888888887766665
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=124.94 Aligned_cols=398 Identities=15% Similarity=0.128 Sum_probs=217.1
Q ss_pred hHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 010848 29 MYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108 (499)
Q Consensus 29 ~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~ 108 (499)
++.|.+..+.++-.+-.++.=-..+....++++.|+ +....-|..-+|++-+..-.+.+-|+.|++|-|...+++.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg----s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG----SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc----chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 445555555555555544443223333333444444 2222345677888888888899999999999999999999
Q ss_pred HHHHHHHHHHHhcCc------hh--HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhh
Q 010848 109 VVFTAGAIIMAAAPD------PY--VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN 180 (499)
Q Consensus 109 ~l~~~~~~~~~~a~s------~~--~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~ 180 (499)
.+..+|+.+-..+.. ++ ..+.+..+.+.+.-.........-.-|+|+++|..+...-..+..+|..++.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 999999987665532 33 5556777777666655555556677799999999887776666677777777776
Q ss_pred hhccCCC-----CchHH--HHHhhhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHH
Q 010848 181 LAFTEVP-----GTWRW--MLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAE 252 (499)
Q Consensus 181 ~~~~~~~-----~~Wr~--~f~~~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (499)
..+.+.. ..|.. .|+.....+.+.+++. +..+|.|+.-. ... ..
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp---s~s-------------------------~~ 248 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP---SAS-------------------------QA 248 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC---chh-------------------------Hh
Confidence 6664432 24765 3554444444433332 33444443100 000 00
Q ss_pred HHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 010848 253 EELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGI 332 (499)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 332 (499)
.+.+..-..+.++.++++++....+.... .+..++.....+-..+...|++....++. ......++.+++.++|
T Consensus 249 ~~~~~~f~~si~~~~~n~~F~il~~~ygi-----~~g~F~~l~~~l~~~l~~sgY~~~~aG~i-g~l~iv~Gmlga~~~g 322 (480)
T KOG2563|consen 249 ALQDASFPKSIKSCFKNRQFIILAICYGI-----GLGLFNSLSTLLNLALCPSGYEGVFAGYI-GALMIVAGMLGALASG 322 (480)
T ss_pred hhhcCcHHHHHHHHHcCccHHHHHHHHhh-----hHHHHHHHHHHhhhccccccCCccccchh-HHHHHHHHHHHHHHHH
Confidence 00001112345677888876554333111 11112221111111122234543333433 3444445789999999
Q ss_pred HHhhccCChHH-HHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhh
Q 010848 333 YLIDHFGRKKL-ALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRG 411 (499)
Q Consensus 333 ~l~dr~grr~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 411 (499)
.+.||.+.-+. .+.......++...+. ........ .++ +...+...+++..+..|+..-+..|..=|...+
T Consensus 323 ii~Dktk~fk~~~~v~~~~~~v~~~~l~---~~t~~~~~----~vi-v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~ 394 (480)
T KOG2563|consen 323 IIADKTKKFKLTTLVLYLFALVGTLMLL---TCTLFLGD----SVI-VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEG 394 (480)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhhccCCc----eEe-hhhhHHHHHHhhcCCCCcceeeeeeeccccCCc
Confidence 99999876443 3222222333321111 11111110 011 112222334566677788888888875455556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cchh-hHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 010848 412 ICGGMSATVNWISNLIVAQTFLTVAELVG---TGAT-FLILAGIAVLAVVFVILFVPETQGLTFL 472 (499)
Q Consensus 412 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~-f~~~~~~~~~~~~~~~~~~pet~~~~l~ 472 (499)
+..|+.+..+.+.+.+..+......+..+ |..+ -+..+..+++..+...++.|+-+++..|
T Consensus 395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 67788777777777666666555544433 2222 2344455555556666776666555544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=134.84 Aligned_cols=353 Identities=16% Similarity=0.143 Sum_probs=187.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH--HHHHHH-Hhc----Cch-hHHHHHHHHHHhhh
Q 010848 67 NQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFT--AGAIIM-AAA----PDP-YVLILGRLLVGLGV 138 (499)
Q Consensus 67 ~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~--~~~~~~-~~a----~s~-~~li~~R~l~Gig~ 138 (499)
+.+....|.+.++..+..++.+|+.|.++||.|.||-++..+.+.. .+.... .+. .|. ...+++-+..|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667999999999999999999999999997775554433322 222221 111 222 23333334445555
Q ss_pred hhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhc-cCChhH
Q 010848 139 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM-PESPRW 217 (499)
Q Consensus 139 g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~l-pesp~~ 217 (499)
....++..+|+.++.-.+ +.=.|-.-.+.++|..++..+++.+... +=+..||+....+++..++.... |+.++.
T Consensus 119 ~~~~~~~Ea~~er~sr~~--~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~~ 194 (412)
T PF01306_consen 119 NAGVPLSEAYAERVSRRN--GFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPPQ 194 (412)
T ss_dssp TTHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSSS
T ss_pred cccchHHHHHHHHHHHHh--cCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCchh
Confidence 556666676666665222 2222334445566666666555544321 23577888776666555544433 443321
Q ss_pred HhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhc
Q 010848 218 LFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYY 297 (499)
Q Consensus 218 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (499)
....+ .+++ +.++.+.....+++|+|++|...+......+. ....-..
T Consensus 195 ~~~~~-~~~~--------------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqq 242 (412)
T PF01306_consen 195 AEVAD-ALGA--------------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQ 242 (412)
T ss_dssp S-SST-TSSS--------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred hhhhc-cccc--------------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHH
Confidence 11100 0000 00000111245678888887654433222111 1111112
Q ss_pred hHHHHHHcCC----CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 298 SPTIVQMAGF----QSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 298 ~p~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
.|.|....-- ++...+++.++ .....++...+..++.+|+|.|+.++++..++.+=.+...+. + +
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~-~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~---~-~------ 311 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSV-QVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA---T-N------ 311 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------S------
T ss_pred HHHHHHHHhcccccChhHHhHHHHH-HHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---c-c------
Confidence 3444433322 22234444433 334578888999999999999998876655444433332211 0 0
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA-TVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 452 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (499)
...+...-..-+.-....-....-|.++.+|++..++...+.. ....++..+.+...+.+.|..|.+.+|++.+++.
T Consensus 312 --~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv 389 (412)
T PF01306_consen 312 --PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIV 389 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHH
Confidence 0111111111110000001122357789999999888777653 4456777788888888999999888999999998
Q ss_pred HHHHHHHHHhcccCCC
Q 010848 453 VLAVVFVILFVPETQG 468 (499)
Q Consensus 453 ~~~~~~~~~~~pet~~ 468 (499)
+...++..+.+++.++
T Consensus 390 ~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 390 LPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHS--SSS
T ss_pred HHHHHHheeeecCCCc
Confidence 8888888887766654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=115.98 Aligned_cols=135 Identities=26% Similarity=0.414 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCc
Q 010848 78 SMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 157 (499)
Q Consensus 78 s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~ 157 (499)
+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|..|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 45567888999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH-hccC
Q 010848 158 RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML-FMPE 213 (499)
Q Consensus 158 Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~-~lpe 213 (499)
|++..+.......+|..+++.+...+.+. .+||+.|++.+...++..+... +.||
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999998887776654 3599999988876666555543 3455
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-11 Score=120.00 Aligned_cols=367 Identities=20% Similarity=0.211 Sum_probs=204.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHhh
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWINDA----YGRKK-ATLLADVVFTAGAIIMAAAPD------PYVLILGRLLVGLG 137 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr----~Grr~-~l~~~~~l~~~~~~~~~~a~s------~~~li~~R~l~Gig 137 (499)
++...|.+..+.-+-=++..|+.|.+.|| +||+| -++++.+.+++.+.++-.+++ .....+.-++.+++
T Consensus 46 s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~ 125 (467)
T COG2211 46 SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLG 125 (467)
T ss_pred cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHH
Confidence 44333444444444445778899999996 77765 467777889999988887774 34566677888888
Q ss_pred hhhhhhhHHHHHhhcCCc-CcccchhhHhHHHHHHHHHHHHHhhhhc----cCC--CCchHHHHHhhhHHHHHHHHHHHh
Q 010848 138 VGIASVTAPVYIAEASPS-EVRGGLVSTNVLMITSGQFLSYLVNLAF----TEV--PGTWRWMLGVSAVPAIIQFVLMLF 210 (499)
Q Consensus 138 ~g~~~~~~~~~i~e~~p~-~~Rg~~~~~~~~~~~~G~~l~~~~~~~~----~~~--~~~Wr~~f~~~~~~~~l~~~~~~~ 210 (499)
.......-.++.+|+.++ +||.+..+.-+.+..+|.++...+...+ .+. ..+||..-++.++.+++..+..++
T Consensus 126 YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 126 YTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred HHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888899998754 7899888887777777766544333222 111 235777766666666665555443
Q ss_pred -ccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhcc
Q 010848 211 -MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 289 (499)
Q Consensus 211 -lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (499)
.+|-+.. .... +++.+.+.......+++||+++...+..+......+
T Consensus 206 ~v~ER~~~---~~~~---------------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~-- 253 (467)
T COG2211 206 NVKERVVE---TQPT---------------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFN-- 253 (467)
T ss_pred HhhcccCc---cccC---------------------------cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHH--
Confidence 4553320 0000 000011111123356778776655443222222111
Q ss_pred CcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCC
Q 010848 290 GINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA 368 (499)
Q Consensus 290 ~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 368 (499)
.......+|.+ ..|.++.. ..........+.+++.++..++.+|+|+|+++..+.+..+++...+.+.. .+
T Consensus 254 ---i~~s~~~yy~~y~lg~~~l~-~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~---~~- 325 (467)
T COG2211 254 ---IRGSIMVYYVTYVLGDPELF-AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP---AG- 325 (467)
T ss_pred ---HHhhhhheeEEEEcCChHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc---Cc-
Confidence 11111122222 12333333 32333344444566688899999999999999888766666655554321 11
Q ss_pred CCCchhhHHHHHHHHHHHHHHhccccccccccccccCcc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010848 369 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-------QYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 441 (499)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~ 441 (499)
.. +..++ ..+..........+.+|++.+|.... +..|...+.......++..++.++.+...+..|+
T Consensus 326 ----~~-~l~~~-~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 326 ----SV-VLIVV-ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred ----ch-HHHHH-HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 01 11111 11222233334568888888876532 2234555666666777777777777766555443
Q ss_pred c---------------hhhHHH-HHHHHHHHHHHHHhcccCCCCCHHHHHHHhhcccc
Q 010848 442 G---------------ATFLIL-AGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAW 483 (499)
Q Consensus 442 ~---------------~~f~~~-~~~~~~~~~~~~~~~pet~~~~l~~~~~~~~~~~~ 483 (499)
. ..+.+. +++.++..+ ...+.|-+ ++.++++.+..++++.
T Consensus 400 v~~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i-~~~~y~L~-~~~~~~I~~eL~~r~~ 455 (467)
T COG2211 400 VPNVSAQSASALFGIRFLFIILPALLLLLAAI-IIFFYKLN-EKMHKEIIEELEQRKA 455 (467)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCC-HHHHHHHHHHHHHHhc
Confidence 1 122233 222233322 33355554 4556677766666543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-12 Score=120.68 Aligned_cols=352 Identities=16% Similarity=0.182 Sum_probs=203.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-HHHHHHHHHHHHHHhcCc---hhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 72 LQETIVSMALVGAIVGAASGGWINDAYGRKKATL-LADVVFTAGAIIMAAAPD---PYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 72 ~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~-~~~~l~~~~~~~~~~a~s---~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
..+...++..+-..+-+|+-|.++|+.|+||... +...+-.+++.+..++++ +...++.-.+..++.....+...+
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence 3466777777777888899999999999776544 444444555555666665 345556677888888889999999
Q ss_pred HHhhcCCcCcccchhhHhHHHHHHHHHHHHHhh--hhccC---------------CCCchHHHHHhhhHHHH-HHHHHHH
Q 010848 148 YIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN--LAFTE---------------VPGTWRWMLGVSAVPAI-IQFVLML 209 (499)
Q Consensus 148 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~--~~~~~---------------~~~~Wr~~f~~~~~~~~-l~~~~~~ 209 (499)
++.+..++++-++..+.......+|..+..+.. ..... ....=|..+.+.++--+ ..+..++
T Consensus 139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 999999998777665543333333333322221 00000 01124666665554332 2333334
Q ss_pred hccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhcc
Q 010848 210 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 289 (499)
Q Consensus 210 ~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (499)
..|+.++- + +.+. +.+.....++ ....+++.+++++.+.+++ .+...-
T Consensus 219 ~v~~~~~~---~-~~~~-----------~~l~~g~k~L------------~~t~k~i~~~~~i~~FLiA-----~~~~~D 266 (438)
T COG2270 219 NVHDAEKI---S-SPPP-----------TALRNGFKEL------------KSTFKEIRGRKNLVLFLIA-----RFFYID 266 (438)
T ss_pred cccccccc---c-ccch-----------HHHHHHHHHH------------HHHHHHHhcccchHHHHHH-----HHHHHh
Confidence 44444320 0 0000 0000000000 0122334444443332222 122233
Q ss_pred CcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCC
Q 010848 290 GINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA 368 (499)
Q Consensus 290 ~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 368 (499)
+.+.+..+...+-. ++|.+..+.... .+......++|+++.|++.||+|-|+++..+.+...+..+..... ..
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~-g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~--- 340 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLI-GIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EG--- 340 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cc---
Confidence 55555555556655 778887665544 344455579999999999999999988877665444433332211 11
Q ss_pred CCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhhHH
Q 010848 369 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG-ATFLI 447 (499)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~f~~ 447 (499)
... ...+.+..+.+..+.....-++..++.|++..++..|+.+..++...+.+++.+....+..+.. ..+..
T Consensus 341 ---~~~----f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~ 413 (438)
T COG2270 341 ---ELD----FWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLS 413 (438)
T ss_pred ---cHH----HHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 111 1222233334444566677788999999999999999999999999999999988888877653 34444
Q ss_pred HHHHHHHHHHHHHHhcccCCCC
Q 010848 448 LAGIAVLAVVFVILFVPETQGL 469 (499)
Q Consensus 448 ~~~~~~~~~~~~~~~~pet~~~ 469 (499)
.+.+..++. ..+...|+.+++
T Consensus 414 i~vll~iGl-~~L~~v~~~~~~ 434 (438)
T COG2270 414 IIVLLLIGL-LLLLRVKVPGRR 434 (438)
T ss_pred HHHHHHhhH-hhEEeecCCCCc
Confidence 444444443 344455555333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=128.39 Aligned_cols=181 Identities=20% Similarity=0.290 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhhhhhchhcchhhH-HhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHH
Q 010848 33 GLTVIAGIGGLLFGYDTGVISGAL-LYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGR-KKATLLADVV 110 (499)
Q Consensus 33 ~~~~~~~l~~~~~g~~~~~i~~~~-~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Gr-r~~l~~~~~l 110 (499)
+.+.++.+-+++.+...+++.... ||.++ ++. +.+...-|+++++..+|.+++++.+|+...|.|. |+.++.+.++
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~-lD~-~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQK-LDP-TATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhh-cCC-CCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 334444567788888888776654 55443 333 2233446999999999999999999999999997 7888999999
Q ss_pred HHHHHHHH-Hh---cC-chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC
Q 010848 111 FTAGAIIM-AA---AP-DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE 185 (499)
Q Consensus 111 ~~~~~~~~-~~---a~-s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~ 185 (499)
..+++++- +. .+ ..+.++++|++.|+|.|. ....-.|+++....++|.++.+....+...|..+||.++..+..
T Consensus 112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 99999876 22 23 468889999999999774 44678899999999999999988888888888888888776644
Q ss_pred CC-Cc--------h---HHHHHhhhHHHHHHHHHH-HhccCChh
Q 010848 186 VP-GT--------W---RWMLGVSAVPAIIQFVLM-LFMPESPR 216 (499)
Q Consensus 186 ~~-~~--------W---r~~f~~~~~~~~l~~~~~-~~lpesp~ 216 (499)
.. .+ | -.+-|+.++..++.+++. +++.|.++
T Consensus 191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 31 12 2 235566666666655554 45677665
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=134.98 Aligned_cols=140 Identities=15% Similarity=0.078 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEAS 153 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~ 153 (499)
.+...+..++.++|.++.|+++||+|||+++.++.++.++++++.+++++...+++.+++.|++.++..+...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456777899999999999999999999999999999999999999999888999999999998889999999999999
Q ss_pred CcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccCCh
Q 010848 154 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESP 215 (499)
Q Consensus 154 p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp 215 (499)
|.++|+..+++......+|.++++.++..+... +.+.+|++.++..++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999887655432 346678887777777777777789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-12 Score=112.75 Aligned_cols=360 Identities=15% Similarity=0.147 Sum_probs=190.7
Q ss_pred hhhhccc-cccchhHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHH---HhcCchhHHHHHHHHH
Q 010848 60 KDDFEAV-NQSSFLQETIVSMALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIM---AAAPDPYVLILGRLLV 134 (499)
Q Consensus 60 ~~~~~~~-~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~---~~a~s~~~li~~R~l~ 134 (499)
+.||+.. +.+.....++.|.|..--.+-.+++|++.|| +|-|+.-.+-+++..++-+.. +..+.+++++.+||+.
T Consensus 67 q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~F 146 (459)
T KOG4686|consen 67 QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLF 146 (459)
T ss_pred hhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheee
Confidence 4455532 2222233456778888888888899999995 888876655555555665544 3567899999999999
Q ss_pred HhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH---hc
Q 010848 135 GLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML---FM 211 (499)
Q Consensus 135 Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~---~l 211 (499)
|+|.-...+....|...|+..|+.+..+++.....-+|...-..+-..+.+. -. .++-...-..+.+.+.+ .+
T Consensus 147 GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~---~~-~~~~~~ghT~LG~~l~~~~~tc 222 (459)
T KOG4686|consen 147 GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT---MG-RMFPGVGHTLLGLWLCFEVKTC 222 (459)
T ss_pred ccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH---HH-HhcccchHHHHHHHHHHHHHHH
Confidence 9998888888899999999999999888887776666654432221111100 00 00000000111111110 00
Q ss_pred cCChhHHhhcCC-HHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhh-cccchhhhhcchhhHHHHHHHHHHHHHHhcc
Q 010848 212 PESPRWLFMKSD-KEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK-KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 289 (499)
Q Consensus 212 pesp~~l~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (499)
..|--.....+- +++++..+. .++....+ .+.....-++ +++|.....+.. ....+.
T Consensus 223 ~~slical~lg~~D~rAerilh------------------~e~g~~Ge~pkLtdv~~f~-ppfw~~~iicv~--yyva~f 281 (459)
T KOG4686|consen 223 KQSLICALSLGLSDDRAERILH------------------LEEGFLGEEPKLTDVNTFY-PPFWVLVIICVL--YYVAWF 281 (459)
T ss_pred HHHHHHHHHhhhhhhHHHHHHh------------------hhcCcccCCcccccccccC-ccHHHHHHHHHH--HHHHHH
Confidence 000000000000 001100000 00000000 0011111122 344544333221 111111
Q ss_pred CcceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHH-HHHHHHHHhhCCC
Q 010848 290 GINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS-LVLLSWAFISGSS 367 (499)
Q Consensus 290 ~~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~-~~~~~~~~~~~~~ 367 (499)
.+ ....|.++ +..|+++...+.+.+....+ ..+.+.+.|.++||+|++-.+..+.....+. =..+.+.
T Consensus 282 PF---i~lg~~fF~~rfGlS~~~a~~i~s~vy~I-sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft------ 351 (459)
T KOG4686|consen 282 PF---ITLGPMFFQKRFGLSAVSAGNILSTVYGI-SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT------ 351 (459)
T ss_pred HH---hhhhHHHHHHhhCCChhhccchhhhhhhh-hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh------
Confidence 21 22335444 46798877766666666655 6778888899999999997765433221111 1111111
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc---h
Q 010848 368 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TG---A 443 (499)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~-~~---~ 443 (499)
.+..+.....+++.....+ ...|..++.+.|++.-|++.|.+.++++++-.+.+.+...+.+..| +. .
T Consensus 352 ----~lsPy~~m~~lGLsysllA----cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ 423 (459)
T KOG4686|consen 352 ----FLSPYTSMTFLGLSYSLLA----CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEA 423 (459)
T ss_pred ----hccHHHHHHHHhhhHHHHH----HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHH
Confidence 0112333333332222222 3346677888899999999999999999998888777776666544 21 2
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 010848 444 TFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 444 ~f~~~~~~~~~~~~~~~~~ 462 (499)
.|..+...++....+.+.+
T Consensus 424 ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 424 FFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHHHHHhhe
Confidence 3445555555554444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.3e-14 Score=142.47 Aligned_cols=304 Identities=18% Similarity=0.238 Sum_probs=3.0
Q ss_pred HHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA 115 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 115 (499)
+..++..+.++...+.++.++.+|++.|+. ++...|++.+.+-++.++..++..++++|-.|-+.+-.+.+++++++
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence 344455555577778888888899999975 44456889999999999999999999999888888899999999988
Q ss_pred HHHHh--------------------------c----------------------C--chhHHHHHHHHHHhhhhhhhhhH
Q 010848 116 IIMAA--------------------------A----------------------P--DPYVLILGRLLVGLGVGIASVTA 145 (499)
Q Consensus 116 ~~~~~--------------------------a----------------------~--s~~~li~~R~l~Gig~g~~~~~~ 145 (499)
+++++ . . -+..++++.++.|+|....++.+
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 76431 0 0 04588899999999999999999
Q ss_pred HHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC-------C--------------CchHHHHHhhhHHHHHH
Q 010848 146 PVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV-------P--------------GTWRWMLGVSAVPAIIQ 204 (499)
Q Consensus 146 ~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~-------~--------------~~Wr~~f~~~~~~~~l~ 204 (499)
.+|+=|..++++-+..++.......+|..+|++++...... + +-|-.-|.+.+...++.
T Consensus 163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988899999988887654321 0 11444444555545444
Q ss_pred HHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHH----HHhhhcccchhhhhcchhhHHHHHHHH
Q 010848 205 FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEE----ELRKKKTVRYLDVFKSKEIRLAFLAGA 280 (499)
Q Consensus 205 ~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (499)
.+..+++|++..-.. +..++.+...++. ++.++ +...+..+. +.-+.-....+++++||.+....+..
T Consensus 243 aipl~~FPk~lp~~~--~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~- 314 (539)
T PF03137_consen 243 AIPLFFFPKKLPGTS--ERQEEKESSERKE---EDSDK--DSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAG- 314 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCccCCCcc--cccchhhhhhcch---hhhhh--hcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHH-
Confidence 444455664322110 0000000000000 00000 000000000 00011122355677777654443332
Q ss_pred HHHHHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHhhHHHHHH
Q 010848 281 GLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR--KKLALSSLAGVIIS 354 (499)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~~~~~~~~~~i~ 354 (499)
............|.|.|++ +.+.++...+.+.......+..+|.+++|++++|++- |.......+...++
T Consensus 315 ----~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 315 ----VFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 2223344555667888886 5677777766666555555678999999999999743 44444444333333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.3e-11 Score=118.21 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=117.6
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhh
Q 010848 58 YIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLG 137 (499)
Q Consensus 58 ~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig 137 (499)
+++++++. +....++..+...++.+++.+++|+++||+|||+.+..+.....+........++.+.+++.|++.+++
T Consensus 242 ~l~~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 318 (393)
T PRK15011 242 FIINELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIY 318 (393)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555543 223345566666677788999999999999999988877766655555555677888888999999998
Q ss_pred hhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccC
Q 010848 138 VGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 213 (499)
Q Consensus 138 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpe 213 (499)
.|...+....+..|.+|+ +||...+.+.....+|..+++.+++.+.+.. +|+..|++.+++.++.++..++.||
T Consensus 319 ~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 319 IGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888888888899999986 4889999888888899999998887776543 5999999988888877777766665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-09 Score=104.41 Aligned_cols=124 Identities=23% Similarity=0.447 Sum_probs=102.6
Q ss_pred HHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcC--cccc
Q 010848 86 VGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAP--DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE--VRGG 160 (499)
Q Consensus 86 ig~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~a~--s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~--~Rg~ 160 (499)
+..+++|+++|| .|+|+++..+.++.++|-++.+.+. +...++++=.+.++|.|..=+...+++.|..|++ +|-.
T Consensus 76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~ 155 (498)
T COG3104 76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDG 155 (498)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCC
Confidence 566789999999 7999999999999999999998884 7889999999999999999999999999999875 3555
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHh
Q 010848 161 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 210 (499)
Q Consensus 161 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~ 210 (499)
..+.+..+.++|.++++++...+.+. .+|+..|...++-..+.++..+.
T Consensus 156 gFt~fY~~iNiGsl~~p~i~~~~~~~-~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 156 GFTLFYMGINIGSLIAPIITGLLAIN-YGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred CccEEEEEeehHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777788999999887766554 35999999988766655555443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-11 Score=121.00 Aligned_cols=307 Identities=16% Similarity=0.196 Sum_probs=201.5
Q ss_pred HHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH
Q 010848 34 LTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTA 113 (499)
Q Consensus 34 ~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~ 113 (499)
+.++.++..+.+++..+.++..+.+|.+.|+... ...|++.+.+=+|..+...+..+.+-|.-|-+.+-++++++++
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~S---s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISS---SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC---CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 3445556778888888888888889999887633 3357788999999999999999999999999999999999999
Q ss_pred HHHHHHhc--------------------C-----------------------------c---hhHHHHHHHHHHhhhhhh
Q 010848 114 GAIIMAAA--------------------P-----------------------------D---PYVLILGRLLVGLGVGIA 141 (499)
Q Consensus 114 ~~~~~~~a--------------------~-----------------------------s---~~~li~~R~l~Gig~g~~ 141 (499)
+++++++= + + +..++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 99876431 0 0 226778999999999999
Q ss_pred hhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC------C------------CchHHHHHhhhHHHHH
Q 010848 142 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV------P------------GTWRWMLGVSAVPAII 203 (499)
Q Consensus 142 ~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~------~------------~~Wr~~f~~~~~~~~l 203 (499)
++.+.+|+=|...+++-...+++......+|.++|.+++...... . +-|..-|++.+...++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 999999999999999888999998888889999988887654221 0 1266667777777777
Q ss_pred HHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHH
Q 010848 204 QFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQ 283 (499)
Q Consensus 204 ~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (499)
..+.++++|....--.++ .++++ .+..+. +++..+......+ .-++-+...+++++||.+....+..
T Consensus 335 ~a~p~f~fPk~lp~~~~~---~~~~~----~~~~k~-~~~~~~~~~~~~~-~ikdfp~s~~~ll~N~if~~~~l~~---- 401 (735)
T KOG3626|consen 335 SAVPLFFFPKELPKSQKR---KRARD----LHVLKT-ESGGAKSDKTFGK-KIKDFPKSIKRLLSNPIFMLVVLAS---- 401 (735)
T ss_pred HHHHHHhCcccCcccccc---chhhh----hccccc-ccccccCCcchhh-hHHHHHHHHHHHhcCchHHHHHHHH----
Confidence 777777777553311110 00000 000000 0000000000000 0001122455677777654433332
Q ss_pred HHHhccCcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHhhHHHHHHHHH
Q 010848 284 AFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR--KKLALSSLAGVIISLVL 357 (499)
Q Consensus 284 ~~~~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~~~~~~~~~~i~~~~ 357 (499)
......+.....|.|-|++ .+|.+......+.......+..+|.+++|+++.|+.- |....+.++...+++++
T Consensus 402 -~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 402 -VIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred -HHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 2222334555668888885 6788877766666555555678899999999998744 55555544444444444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-11 Score=119.28 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC----chhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 72 LQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP----DPYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 72 ~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~----s~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
..+...+...++..++.++.|++.||+|||+++.++.++.+++..+..... +...+++.+++.|++.+...+....
T Consensus 252 ~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 252 NASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888889999999999999999999999999999988876666532 2456778999999999999999999
Q ss_pred HHhhcCCcCcccchhhHhH-HHHHHHHHHHHHhhhhccCCC-----CchHHHHHhhhHHHHHHHHH-HHhccCC
Q 010848 148 YIAEASPSEVRGGLVSTNV-LMITSGQFLSYLVNLAFTEVP-----GTWRWMLGVSAVPAIIQFVL-MLFMPES 214 (499)
Q Consensus 148 ~i~e~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~~~~-----~~Wr~~f~~~~~~~~l~~~~-~~~lpes 214 (499)
+++|++|+++||+..+..+ ....+|..+++.+++.+.+.. .+||..|++.++..++..++ .++++|+
T Consensus 332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999986 567789999998887765432 25999999888776665555 4567876
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-11 Score=119.50 Aligned_cols=137 Identities=13% Similarity=0.045 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHh
Q 010848 71 FLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA 150 (499)
Q Consensus 71 ~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~ 150 (499)
...+++.++..++..++.+++|++.||+|||+.+..+.++..++..+.+++++.+.+++.+++.|++.+...+....++.
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 341 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT 341 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888899999999999999999999999999999998888889999999999999999999988888889999
Q ss_pred hcCCcCcccchhhH-hHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 151 EASPSEVRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 151 e~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
|.+|++.|+...+. +.....+|..+++.+.+.+.+.. +||..|.+.++..++..++.
T Consensus 342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHH
Confidence 99999999876543 45556778888887777666543 59999998777665544443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=112.79 Aligned_cols=141 Identities=26% Similarity=0.385 Sum_probs=125.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhH-HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWINDAYGRKK-ATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~-~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
+....++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++...+++..++.|++.+...+....
T Consensus 209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 288 (352)
T cd06174 209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHH
Confidence 4445677888999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHh
Q 010848 148 YIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 210 (499)
Q Consensus 148 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~ 210 (499)
++.|..|+|+|++..+.......+|..+++.+.+.+.+. .+|++.|++.++..++..+...+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999887776653 36999999988887776665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=117.10 Aligned_cols=135 Identities=21% Similarity=0.198 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhc
Q 010848 73 QETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEA 152 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~ 152 (499)
.+.+.+...++..++.+.+|++.||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.|.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45566677788889999999999999999999999888888777777888888899999999999999999999999999
Q ss_pred CCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 153 SPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 153 ~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
.|+++||+..+.+.....+|..+++.+++.+.+.. +|++.|++.++..++..+..
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999888776543 59999999888777765554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-10 Score=113.28 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEAS 153 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~ 153 (499)
++..+.+.++..++.++.|++.||+||||.+..+..+..++.++..+.++.+.+++.+++.|++.+...+.....+.|..
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~ 331 (399)
T PRK05122 252 ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV 331 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 44567788888999999999999999999999998888888888888888888899999999999998888888889999
Q ss_pred CcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccC
Q 010848 154 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 213 (499)
Q Consensus 154 p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpe 213 (499)
|+|+||+..+.+......|..+++.+.+.+.+.. +|++.|++.+...++.++..+++++
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 332 PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998888888877776655554433 5999999988777776666555544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.9e-10 Score=112.16 Aligned_cols=155 Identities=18% Similarity=0.110 Sum_probs=122.5
Q ss_pred HHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010848 56 LLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVG 135 (499)
Q Consensus 56 ~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~G 135 (499)
.|.+.++.+. +....+...+...++..++.++.|++.||+|||+.+..+.+...++.....+.++.+.+.+.-++.|
T Consensus 243 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (406)
T PRK11551 243 LPSLLVGQGL---SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHhCCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4555555432 2333466788888999999999999999999999988877777666666677888888888889999
Q ss_pred hhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccC
Q 010848 136 LGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 213 (499)
Q Consensus 136 ig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpe 213 (499)
++.++..+...++..|.+|+++||+..+.......+|..+++.+.+.+.+..++|+..+++.....++..+..+++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988888888999999999999999999999998999999999988877665556787887776666655555444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=113.81 Aligned_cols=163 Identities=22% Similarity=0.234 Sum_probs=114.1
Q ss_pred eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 293 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 293 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
...++.|.+.++.|.+..+.+...+... .+..++.++.|++.||+|||+.+..+.....++.++.... .+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~----- 104 (398)
T TIGR00895 35 AMGFAAPAISAEWGLDPVQLGFLFSAGL-IGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA----TN----- 104 (398)
T ss_pred HHHhhHHHHhhccCCCHHHHHHHHHHHH-HHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----cc-----
Confidence 3345678888888888777666655544 4568899999999999999998877766555554443321 10
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 452 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (499)
. +.... ..+...+......+...++..|.+|++.|+++.++......++..+++...+.+.+..+|+..|++.+.+.
T Consensus 105 -~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 181 (398)
T TIGR00895 105 -V-TQLLI-LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181 (398)
T ss_pred -h-HHHHH-HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence 1 11111 11122222233346667888999999999999999999888998888888777777788888888877777
Q ss_pred HHHHHHHHHhcccCCC
Q 010848 453 VLAVVFVILFVPETQG 468 (499)
Q Consensus 453 ~~~~~~~~~~~pet~~ 468 (499)
.+.....+.+.||+..
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 182 LLLLLLLMRFLPESID 197 (398)
T ss_pred HHHHHHHHHhCCCCCh
Confidence 7776667777888753
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=113.72 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCch--hHHHHHHHHHHhhhhhhhhhHHHHH
Q 010848 72 LQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP--YVLILGRLLVGLGVGIASVTAPVYI 149 (499)
Q Consensus 72 ~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~--~~li~~R~l~Gig~g~~~~~~~~~i 149 (499)
..+...+...++..++.++.|++.||+|||+.+.++..+..++.++..+.++. ..++...++.|++.|...+..+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 320 (377)
T TIGR00890 241 FLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLV 320 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHH
Confidence 34667888899999999999999999999999999999988888877777653 3355678889999888888888999
Q ss_pred hhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHH
Q 010848 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQ 204 (499)
Q Consensus 150 ~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~ 204 (499)
.|.+|+++|++..+.......+|..+++.+.+.+.+.. +|++.|++.++..++.
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHh
Confidence 99999999999999999999999999998877765543 5999999877666553
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-10 Score=114.23 Aligned_cols=162 Identities=16% Similarity=0.166 Sum_probs=114.0
Q ss_pred hhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchh
Q 010848 295 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 374 (499)
Q Consensus 295 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 374 (499)
....|.+.++.|.+..+.+...+... .+..++.++.|++.||+|||+.+..+.....++..+..... + .
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----~------~ 82 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFS-WGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG----A------Y 82 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHH-HHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc----C------H
Confidence 34557777888988877776665544 45788999999999999999988776665555544443321 0 1
Q ss_pred hHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 010848 375 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL 454 (499)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 454 (499)
+.... ..+..........+....+..|.+|++.|+++.++......++..+++.....+.+..+|+..|.+.+.+.++
T Consensus 83 -~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 83 -VSLYI-LRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160 (399)
T ss_pred -HHHHH-HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 11111 1112222222344566678899999999999999999999999888888777777778899888888888777
Q ss_pred HHHHHHHhcccCCCC
Q 010848 455 AVVFVILFVPETQGL 469 (499)
Q Consensus 455 ~~~~~~~~~pet~~~ 469 (499)
..+..+++.||++.+
T Consensus 161 ~~~~~~~~~~~~~~~ 175 (399)
T TIGR00893 161 WGVLWLKFIPDPPQK 175 (399)
T ss_pred HHHHhhheecCCCCc
Confidence 777666677776543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-10 Score=111.16 Aligned_cols=135 Identities=18% Similarity=0.245 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEAS 153 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~ 153 (499)
+...+.+.++..+++++.|++.||+||||.+..+..+..++.++..+.++...+++.+++.|++.+...+.....+.|.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 331 (392)
T PRK12382 252 GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV 331 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 44566777888899999999999999999999999998888888888888888889999999999998888888999999
Q ss_pred CcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH
Q 010848 154 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209 (499)
Q Consensus 154 p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~ 209 (499)
|+++||...+.......+|..+++.+.+.+.+.. +|++.|++.+...++..+..+
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 332 PSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988999999988877766543 599999998877766655543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.9e-10 Score=110.99 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=111.4
Q ss_pred eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 293 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 293 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
...+..|.+.++.|.+..+.+...+.... +..++.++.|++.||+|||+.+..+.....++..+..+. . +
T Consensus 26 ~~~~~~~~l~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~-~----- 95 (412)
T TIGR02332 26 NIGFAGLTMGKDLGLSATMFGLAATLFYA-AYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA---T-G----- 95 (412)
T ss_pred hHHHHHHhhHhhcCCCHHHHHHHHHHHHH-HHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---c-C-----
Confidence 34445676778889888887776665544 468889999999999999998877766665555544332 1 1
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCchhhH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------LVGTGATFL 446 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~------~~~~~~~f~ 446 (499)
... +...-+..+.......+....+..|.+|++.|+++.++......++..+++.....+.+ ..+|+..|.
T Consensus 96 -~~~--l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~ 172 (412)
T TIGR02332 96 -PES--LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFL 172 (412)
T ss_pred -HHH--HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHH
Confidence 111 11111122222222345555678999999999999999988887887777666555543 358999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCC
Q 010848 447 ILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 447 ~~~~~~~~~~~~~~~~~pet~~ 468 (499)
+.++..++...+.++++||++.
T Consensus 173 ~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 173 LEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHHHhhccCCCcc
Confidence 8888887777777778898864
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=109.22 Aligned_cols=161 Identities=19% Similarity=0.159 Sum_probs=111.7
Q ss_pred eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 293 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 293 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
....+.|.+.++.|.+..+.+...+... .+..++.++.|++.||+|||+.+..+.....++.++......
T Consensus 41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------- 110 (434)
T PRK11663 41 SFNAAMPEMLADLGLSRSDIGLLATLFY-ITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS--------- 110 (434)
T ss_pred hHHHhhHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH---------
Confidence 3345678888889998777776665544 457889999999999999999887777666665554433210
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 452 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (499)
. +. +....+..........+....+..|.+|++.|+++.++......++..+++.....+.+..+|+..|++.+++.
T Consensus 111 -~-~~-l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~ 187 (434)
T PRK11663 111 -L-WA-FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIA 187 (434)
T ss_pred -H-HH-HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 11 11111111111112235556788899999999999999999999999888887777778889998998888777
Q ss_pred HHHHHHHHHhcccC
Q 010848 453 VLAVVFVILFVPET 466 (499)
Q Consensus 453 ~~~~~~~~~~~pet 466 (499)
++..+...+++||+
T Consensus 188 ~~~~~~~~~~~~~~ 201 (434)
T PRK11663 188 IVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHcCCC
Confidence 66655555666765
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=107.19 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=114.7
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhh
Q 010848 59 IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 138 (499)
Q Consensus 59 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~ 138 (499)
+.++++. +....++..+.......++.++.|++.||+|||+++.++.++..+...+..+.++.+.+++.+++.|++.
T Consensus 226 ~~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 302 (375)
T TIGR00899 226 IIHELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI 302 (375)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455543 2233455666666666778899999999999999988887776666555566778888888999999999
Q ss_pred hhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccC
Q 010848 139 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 213 (499)
Q Consensus 139 g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpe 213 (499)
|...+....++.|..|++ |+...+.+.....+|..+++.+.+.+.+.. +|+..|++.++..++..+...+++|
T Consensus 303 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 303 GILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence 988888889999998765 568888888888889999988877665543 5999999988877776666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-09 Score=106.64 Aligned_cols=161 Identities=18% Similarity=0.145 Sum_probs=112.2
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
...|.+.++.|.++.+.+...+... .+..++.++.|++.||+|||+.+..+.....++.+..... . + .
T Consensus 26 ~~~p~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~-~------~- 93 (385)
T TIGR00710 26 PAFPEIAADLSTPASIVQMTLTLYL-LGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS---N-N------I- 93 (385)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---c-c------H-
Confidence 3457778888998877776665544 4478899999999999999999877766555555444321 1 0 1
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 455 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 455 (499)
+. +....+..........+...++..|.+|++.|+++.+.......++..+++.....+.+..+|+..|++.+...++.
T Consensus 94 ~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 94 ET-LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172 (385)
T ss_pred HH-HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 11 11111111111122234556778899999999999999999998888888887777778788888888888877777
Q ss_pred HHHHHHhcccCCCC
Q 010848 456 VVFVILFVPETQGL 469 (499)
Q Consensus 456 ~~~~~~~~pet~~~ 469 (499)
.+..+++.||++.+
T Consensus 173 ~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 173 SALIFFILPETLPY 186 (385)
T ss_pred HHHHHHhCCCCCCC
Confidence 77666778887554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-08 Score=97.58 Aligned_cols=359 Identities=16% Similarity=0.182 Sum_probs=201.4
Q ss_pred HHHHHHhhhhhhchhcchhhHHhhhhhhccc--cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH
Q 010848 36 VIAGIGGLLFGYDTGVISGALLYIKDDFEAV--NQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTA 113 (499)
Q Consensus 36 ~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~--~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~ 113 (499)
....+-.|.+++.........+.....++.. .......+.......+...+.++..|.++||+|||..+....+...+
T Consensus 25 ~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l 104 (463)
T KOG2816|consen 25 PLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL 104 (463)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence 3334556666666655555555554444321 11111111122233456678888999999999999999999988888
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhh--hhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchH
Q 010848 114 GAIIMAAAPDPYVLILGRLLVGLG--VGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWR 191 (499)
Q Consensus 114 ~~~~~~~a~s~~~li~~R~l~Gig--~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr 191 (499)
...+..+.. ++.++ +.|+. .+.......+|++|....|+|....+.....+..+..+++.++...... .+--
T Consensus 105 ~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~-~~~a 178 (463)
T KOG2816|consen 105 PALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF-LGIA 178 (463)
T ss_pred hHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCch
Confidence 777766665 33333 55543 3456677888999999999999999988887788888888877665443 2355
Q ss_pred HHHHhhhHHHHHHHHHH-HhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcch
Q 010848 192 WMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK 270 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~-~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (499)
..|++.....++..+.. .++||+-..-.+. + + .............+ ..+.. ......-++|
T Consensus 179 ~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~-~--~~~~~~~~~~~~~~-------~~~~~-----~~~~~~~~~r 240 (463)
T KOG2816|consen 179 LVFLIAAASGILSLLYMLLFLPESLQEKERS---D-A--TLRELTPGSLDSSH-------VADAF-----QSLTKVGPDR 240 (463)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCccccc---c-c--cccccCCCcccchh-------hhhhh-----hhhcccCCCc
Confidence 67888887777766664 5689874321111 0 0 00000000000000 00000 0000001112
Q ss_pred hhHHHHHHHHHHHHHHhccCcc-eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHH-HHhhccCChHHHHHhh
Q 010848 271 EIRLAFLAGAGLQAFQQFTGIN-TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGI-YLIDHFGRKKLALSSL 348 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~ 348 (499)
......+......... ..+.. ...+|+. ...+++....+.+.+..... ..++..+.. .+...++-|+....++
T Consensus 241 ~~l~l~l~~~~~~~~~-~~~~~~~~~~yl~---~~f~w~~~~~s~~~~~~~~~-~~i~~l~~~~~l~~~l~~~~~i~lGl 315 (463)
T KOG2816|consen 241 LLLLLLLVAFLSSLPE-AGGASDVLLLYLK---AKFGWNKKEFSDLLSLVSIL-GIISQLLLLPLLSSILGEKRLISLGL 315 (463)
T ss_pred cchHHHHHHHHHHHHH-hcCceeEEEEEEe---eecCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHhhHHH
Confidence 2222222222221111 11111 2222221 24577777777666555544 566666555 7778888888776666
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHH
Q 010848 349 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 428 (499)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~ 428 (499)
....+......+... . +..+. ... ...+.....+...+..+-..+++.+|+..++...+..+.+.+.
T Consensus 316 ~~~~~~~~~~af~~~-----~---w~~~~---~~v--~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~ 382 (463)
T KOG2816|consen 316 LSEFLQLLLFAFATE-----T---WMMFA---AGV--VVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVS 382 (463)
T ss_pred HHHHHHHHHHHHhcc-----c---hhhhH---HHH--HHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhh
Confidence 666666555554311 1 11111 111 1122233446666777788889999999999999998888888
Q ss_pred HHHHHHHH
Q 010848 429 AQTFLTVA 436 (499)
Q Consensus 429 ~~~~~~~~ 436 (499)
+..+..+.
T Consensus 383 ~~~~~~i~ 390 (463)
T KOG2816|consen 383 PALYGNIF 390 (463)
T ss_pred HHHHHHHH
Confidence 77766553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-09 Score=106.07 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=109.1
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhH
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 376 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 376 (499)
..|.+.++.|.+..+.+...+.... ...++.+..|++.||+|||+.+..+.....++.+..... . + +..
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~-~------~~~ 99 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAW-VVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA---W-N------FTV 99 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh---c-c------HHH
Confidence 4577888899988887766655443 457788888999999999999887766655554443321 1 0 111
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 010848 377 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
. .+ ..+..+.......+...++..|.+|++.|+++.|+......++..+++.....+.+..+|+..|++.+++.++..
T Consensus 100 l-~~-~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~ 177 (390)
T PRK03545 100 L-LI-SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITL 177 (390)
T ss_pred H-HH-HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 1 11 111111111122344556778999999999999999888888888888777777788899999999888887776
Q ss_pred HHHHHhcccCC
Q 010848 457 VFVILFVPETQ 467 (499)
Q Consensus 457 ~~~~~~~pet~ 467 (499)
...+...||.+
T Consensus 178 ~~~~~~~~~~~ 188 (390)
T PRK03545 178 LLLIKLLPLLP 188 (390)
T ss_pred HHHHHhCCCCC
Confidence 66666677653
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-08 Score=99.59 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=103.7
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHHHHHHHHHHHHHHHHhcC----chh
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYG-----RKKATLLADVVFTAGAIIMAAAP----DPY 125 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~G-----rr~~l~~~~~l~~~~~~~~~~a~----s~~ 125 (499)
..|+..++++... .......+...+... .-+++|.++|.+- ||+-++++.++..++....+..+ +..
T Consensus 12 ~~~~l~~~l~ls~---~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 12 IYPFLKDDLGLSP---AQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHcCCCH---HHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 4566778886533 223334444445443 3467899999873 55556666666655555555543 456
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcC--cccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHH
Q 010848 126 VLILGRLLVGLGVGIASVTAPVYIAEASPSE--VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAII 203 (499)
Q Consensus 126 ~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l 203 (499)
...+.=++.-+|.+..-.++-+.+.|...+| .||...+........|.+++..+++...+.. ++|+.|.+.+....+
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLL 166 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHH
Confidence 6666778888999999999999999988433 3677777777778889999888877665543 588888888766665
Q ss_pred HHHHHHh-ccC
Q 010848 204 QFVLMLF-MPE 213 (499)
Q Consensus 204 ~~~~~~~-lpe 213 (499)
..+..++ .+|
T Consensus 167 ~~~~~~~~~~e 177 (433)
T PF03092_consen 167 MLIVALFLLEE 177 (433)
T ss_pred HHHHHHHhhhh
Confidence 5545444 444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=110.11 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=114.3
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhh--hchhHHHHH--HHHHHHHHHHHHHhcCchhHHHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA--YGRKKATLL--ADVVFTAGAIIMAAAPDPYVLILG 130 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr--~Grr~~l~~--~~~l~~~~~~~~~~a~s~~~li~~ 130 (499)
.+|...++++. +....++..+...++..++.++.|+++|| +++|+...+ +.++.+++.+++..+++++.+++.
T Consensus 263 ~l~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~ 339 (455)
T TIGR00892 263 FLVPYAKDKGV---DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIY 339 (455)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 33433445433 33445677888889999999999999998 444443333 333344445566778899999999
Q ss_pred HHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHH
Q 010848 131 RLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 206 (499)
Q Consensus 131 R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~ 206 (499)
+++.|++.+...+...+++.|.+|+++||...+.+.....+|..+++.+++.+.+..++|++.|++.++..++..+
T Consensus 340 ~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 340 CIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887766555699999998876555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-09 Score=105.30 Aligned_cols=163 Identities=11% Similarity=0.097 Sum_probs=107.6
Q ss_pred cceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCC
Q 010848 291 INTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS 369 (499)
Q Consensus 291 ~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 369 (499)
......+.|.++ ++.|.+..+.+...+.... ...++.++.|+++||+|||+.+..+.....++.+.+.+.. +
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~----~-- 95 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALT-IGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN----N-- 95 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh----H--
Confidence 333344455555 5689988888877765544 4678889999999999999988776665555544433221 0
Q ss_pred CCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHH
Q 010848 370 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA 449 (499)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~ 449 (499)
. +.......+.. .......+....+..|.+|++.|+++.++.+....++..+++.....+.+ .+|+..|.+.+
T Consensus 96 ----~-~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 96 ----V-TLVVLFFALIN-CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred ----H-HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 1 11111111111 11112234556777899999999999999999999988888777666554 57888888888
Q ss_pred HHHHHHHHHHHHhcccCC
Q 010848 450 GIAVLAVVFVILFVPETQ 467 (499)
Q Consensus 450 ~~~~~~~~~~~~~~pet~ 467 (499)
++.++..+...++.||++
T Consensus 169 ~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 169 ICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 777777666666667664
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=106.71 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=112.2
Q ss_pred ccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCC
Q 010848 288 FTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 367 (499)
Q Consensus 288 ~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 367 (499)
..+........|.+.++.|.+..+.+...+... .+..++.++.|+++||+|||+.+..+.....++..+.... .+
T Consensus 16 ~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----~~ 90 (392)
T PRK10473 16 PAGIDMYLVGLPRIAADLNASEAQLHIAFSVYL-AGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----ET 90 (392)
T ss_pred HHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh----Cc
Confidence 334444445678888888888776665555443 4467888999999999999998877665555554443321 10
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHH
Q 010848 368 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLI 447 (499)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~ 447 (499)
.... ... .+..........+..+.+..|.+|++.|+++.+..+....++..+++.....+.+..+|+..|++
T Consensus 91 ------~~~~-~~~-~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~ 162 (392)
T PRK10473 91 ------SSLF-LAG-RFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT 162 (392)
T ss_pred ------HHHH-HHH-HHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence 1111 111 11111111122344567888999999999999998888888777777666666667788888888
Q ss_pred HHHHHHHHHHHHHHhcccCCCC
Q 010848 448 LAGIAVLAVVFVILFVPETQGL 469 (499)
Q Consensus 448 ~~~~~~~~~~~~~~~~pet~~~ 469 (499)
.+++.++..+..+++.||++.+
T Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 163 MAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc
Confidence 8888887777777778887543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-09 Score=103.84 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=110.1
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhH
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 376 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 376 (499)
..|.+.++.|.++.+.+...+.... ...++.++.|++.||+|||+.+..+.....++.++.... . + +..
T Consensus 42 ~l~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~-~------~~~ 110 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQSVTVTAF-VAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA---N-S------FSL 110 (394)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH---C-h------HHH
Confidence 4566778889988777766655443 467889999999999999999887777666555443321 1 0 111
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 010848 377 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
+...-+..........+...++..|.+|++.|+++.+.......++..+++.....+.+..+|+..|++.+.+.++..
T Consensus 111 --l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 111 --LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred --HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 111111222222223455667788999999999999999998888888888888888888899988888877776665
Q ss_pred HHHHHhcccCCC
Q 010848 457 VFVILFVPETQG 468 (499)
Q Consensus 457 ~~~~~~~pet~~ 468 (499)
+......||+++
T Consensus 189 l~~~~~~p~~~~ 200 (394)
T PRK10213 189 FWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHCCCCCc
Confidence 555556787643
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.8e-09 Score=105.98 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=99.8
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
...|++.++ |.+..+.+...+.. ..+..++.++.|+++||+|||+++..+.....++..+..+..... .. .
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~-~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~-----~~-~- 120 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGI-SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-----SS-I- 120 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHH-HHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc-----cc-H-
Confidence 456776666 88877766665544 445788999999999999999988877766665554443321100 00 1
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCchhhHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF-LTVAELVGTGATFLILAGIAVL 454 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~f~~~~~~~~~ 454 (499)
+...... +..........+.......|.+|++.|+++.++.+....+++.+.+... .......+|+..|++.+.+.++
T Consensus 121 ~~~~~~~-~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~ 199 (452)
T PRK11273 121 AVMFVLL-FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAIL 199 (452)
T ss_pred HHHHHHH-HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111111 1111112122233345567889999999999998777776654333322 2222334788888888887777
Q ss_pred HHHHHHHhcccCCC
Q 010848 455 AVVFVILFVPETQG 468 (499)
Q Consensus 455 ~~~~~~~~~pet~~ 468 (499)
..+...+++||+.+
T Consensus 200 ~~~l~~~~~~~~~~ 213 (452)
T PRK11273 200 VALFAFAMMRDTPQ 213 (452)
T ss_pred HHHHHHHHccCCHh
Confidence 76777777787643
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-09 Score=104.30 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=105.9
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHH
Q 010848 298 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 377 (499)
Q Consensus 298 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 377 (499)
.|.+.++.+.+....+...+... .+..++.++.|+++||+|||+.+..+.....++.+..... ++ ....
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----~~------~~~l 107 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYL-AGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT----TS------MTQF 107 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc----CC------HHHH
Confidence 34566677887776666655544 4468889999999999999998887765555544433321 10 1111
Q ss_pred HHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q 010848 378 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 457 (499)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 457 (499)
.. .-+..+.......+..+++..|.+|++.|+++.+.......++..+++.....+.+..+|+..|++.+++.++..+
T Consensus 108 ~~--~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~ 185 (413)
T PRK15403 108 LI--ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFV 185 (413)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 11 1111111111122344567789999999999999888888888877777666667778899999988888887766
Q ss_pred HHHHhcccCCC
Q 010848 458 FVILFVPETQG 468 (499)
Q Consensus 458 ~~~~~~pet~~ 468 (499)
..+++.||+++
T Consensus 186 ~~~~~lp~~~~ 196 (413)
T PRK15403 186 GLLLAMPETVK 196 (413)
T ss_pred HHHHhCCCCcc
Confidence 66677898754
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-09 Score=105.97 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH--HHHHh--cCchhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 72 LQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA--IIMAA--APDPYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 72 ~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~--~~~~~--a~s~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
..+...+...++..++.++.|+++||+|||+.+.....+..+.. ....+ .++.+.++...++.|++.+...+....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 335 (394)
T TIGR00883 256 SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGS 335 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34667778888999999999999999999998776555544433 22222 246677778889999999999999999
Q ss_pred HHhhcCCcCcccchhhH-hHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHH
Q 010848 148 YIAEASPSEVRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA 201 (499)
Q Consensus 148 ~i~e~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~ 201 (499)
++.|.+|+++|++..+. +.....+|..++|.+++.+.+..+.|++.++..+...
T Consensus 336 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 99999999999988886 4455667887888887776655445888777665543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-10 Score=109.40 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=111.2
Q ss_pred hhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchh
Q 010848 295 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 374 (499)
Q Consensus 295 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 374 (499)
....|.+.++.|.+..+.+.+.+... .+..++.++.|+++||+|||+.+..+.....++.++..... + .
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~------~ 83 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFS-IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST----S------L 83 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHH-HHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh----h------H
Confidence 34567777888998877776665544 45788999999999999999998877766666555544321 0 1
Q ss_pred hHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCchhhHHHHHHHH
Q 010848 375 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ-TFLTVAELVGTGATFLILAGIAV 453 (499)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~-~~~~~~~~~~~~~~f~~~~~~~~ 453 (499)
+. +....+..........+...++..|.+|++.|+++.++......++..+++. ....+.+..+|+..|++.+.+.+
T Consensus 84 -~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 84 -WV-MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred -HH-HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 11 1112222223333345667788899999999999999988888888877773 44445566788888888887777
Q ss_pred HHHHHHHHhcccCCC
Q 010848 454 LAVVFVILFVPETQG 468 (499)
Q Consensus 454 ~~~~~~~~~~pet~~ 468 (499)
+..+..+++.||++.
T Consensus 162 ~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 162 IVSLICFLLLRDSPQ 176 (379)
T ss_pred HHHHHHheeeCCCcc
Confidence 776666677777643
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.9e-09 Score=107.49 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=103.6
Q ss_pred hhhHH-hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH--HHhcCchhHHHH
Q 010848 53 SGALL-YIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII--MAAAPDPYVLIL 129 (499)
Q Consensus 53 ~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~--~~~a~s~~~li~ 129 (499)
..-+| +++++++.. ....++..+...++..+|.+++|+++||+|||+.+.....+..++..+ ....++.....+
T Consensus 278 ~~~~p~yl~~~~g~s---~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (467)
T PRK09556 278 DNWSPVYAFQELGFS---KEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA 354 (467)
T ss_pred HHHHHHHHHHccCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 33344 455555542 223356778888999999999999999999998776655444433322 233456667778
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHH-HHHHHHHhhhhccCC-----------CCchHHHHHhh
Q 010848 130 GRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITS-GQFLSYLVNLAFTEV-----------PGTWRWMLGVS 197 (499)
Q Consensus 130 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~-----------~~~Wr~~f~~~ 197 (499)
.+++.|+..............|.+|++.||.+.+.......+ |..+++.+.+.+.+. ..+|+..|++.
T Consensus 355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~ 434 (467)
T PRK09556 355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL 434 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence 899998755444434446777999999999999988766664 656666655555440 23599999887
Q ss_pred hHHHHHHHHHHH
Q 010848 198 AVPAIIQFVLML 209 (499)
Q Consensus 198 ~~~~~l~~~~~~ 209 (499)
.+..++..+..+
T Consensus 435 ~~~~~~~~~~~~ 446 (467)
T PRK09556 435 DIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHH
Confidence 666666554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=103.42 Aligned_cols=137 Identities=12% Similarity=0.169 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh---cC-chhHHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 010848 78 SMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA---AP-DPYVLILGRLLVGLGVGIASVTAPVYIAEAS 153 (499)
Q Consensus 78 s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~---a~-s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~ 153 (499)
....+...++.+++|+++||+|||+++..+.++..++...... .. +...+++.-++.|++.+...+...++++|.+
T Consensus 293 ~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~ 372 (438)
T PRK09952 293 LLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMF 372 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444556778889999999999999988887665554433322 22 3444455667778888888888899999999
Q ss_pred CcCcccchhhHh-HHHHHHHHHHHHHhhhhccCC-CCchHHHHHhhhHHHHHHHHHHHhccCC
Q 010848 154 PSEVRGGLVSTN-VLMITSGQFLSYLVNLAFTEV-PGTWRWMLGVSAVPAIIQFVLMLFMPES 214 (499)
Q Consensus 154 p~~~Rg~~~~~~-~~~~~~G~~l~~~~~~~~~~~-~~~Wr~~f~~~~~~~~l~~~~~~~lpes 214 (499)
|.|.|+...+.. ..+..+|..++|.+...+.+. .++|+..+...++.+++..+..+.++|+
T Consensus 373 p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 373 GASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 999998666663 334446777777766665442 2359988888777777776666666664
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-09 Score=104.25 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=104.6
Q ss_pred ehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 294 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 294 ~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
.....|.+.++.|.+..+.+...+.... +..++.++.|++.||+|||+.+..+.....++.++.... . +
T Consensus 31 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~---~-~------ 99 (405)
T TIGR00891 31 VALVLAEVAGEFGLTTVDAASLISAALI-SRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA---P-G------ 99 (405)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---c-c------
Confidence 3445577778889988887776665544 478899999999999999999877665555554443321 1 0
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchhhHHHHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--TGATFLILAGI 451 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~f~~~~~~ 451 (499)
+ +. +....+..+.......+...++..|.+|++.|+++.++......++..+++.....+.+..+ |+..|.+.+..
T Consensus 100 ~-~~-l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~ 177 (405)
T TIGR00891 100 Y-IT-MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILP 177 (405)
T ss_pred H-HH-HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 1 11 11111122222223334556778899999999999999998888888887777666666555 66667664444
Q ss_pred HHHHHHHHHHhcccCCC
Q 010848 452 AVLAVVFVILFVPETQG 468 (499)
Q Consensus 452 ~~~~~~~~~~~~pet~~ 468 (499)
.++. ++.....||++.
T Consensus 178 ~~~~-~~~~~~~~~~~~ 193 (405)
T TIGR00891 178 IIFA-LWLRKNIPEAED 193 (405)
T ss_pred HHHH-HHHHHhCCCChh
Confidence 4333 344456788643
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-08 Score=102.46 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=105.0
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhH
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 376 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 376 (499)
..|.+.++.+.+..+.+...+.. ..+..++.++.|+++||+|||+.+..+.....++....... . + . +
T Consensus 35 ~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~-~------~-~ 102 (406)
T PRK15402 35 GMLAVVEDFNAGAEWVPTSMTAY-LAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---Q-S------I-E 102 (406)
T ss_pred chHHHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---c-c------H-H
Confidence 34567788888877766655443 34568888999999999999999877665555554443321 1 0 1 1
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 010848 377 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
. +....+..+.......+..++...|.+|++.|.++.++......++..+++.+...+.+..+|+..|++.+++.++..
T Consensus 103 ~-l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~ 181 (406)
T PRK15402 103 Q-FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF 181 (406)
T ss_pred H-HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 1 111111111111112345566778999999998888887777767777777766666777789989988888888777
Q ss_pred HHHHHhcccCCC
Q 010848 457 VFVILFVPETQG 468 (499)
Q Consensus 457 ~~~~~~~pet~~ 468 (499)
+..++..||+++
T Consensus 182 ~~~~~~~~~~~~ 193 (406)
T PRK15402 182 FGLWRAMPETAG 193 (406)
T ss_pred HHHHHhCCCCCc
Confidence 666667888754
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=110.75 Aligned_cols=165 Identities=19% Similarity=0.189 Sum_probs=115.6
Q ss_pred eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 293 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 293 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
......|.+.++.|.+..+.+...+.. ..+..++.++.|++.||+|||+.+..+.....++..+.... ++
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~----- 89 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSY-MLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA----PN----- 89 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHH-HHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc----CC-----
Confidence 334567888888888877766665544 45578899999999999999999877766555554433211 10
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 452 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (499)
. ..+....+..+.......+...++..|.+|++.|+++.++......++..+++.....+.+..+|++.|++.+.+.
T Consensus 90 -~--~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~ 166 (485)
T TIGR00711 90 -L--ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIG 166 (485)
T ss_pred -H--HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHH
Confidence 1 1111122222222333445667888999999999999999988888888888877777778888998998888777
Q ss_pred HHHHHHHHHhcccCCCCC
Q 010848 453 VLAVVFVILFVPETQGLT 470 (499)
Q Consensus 453 ~~~~~~~~~~~pet~~~~ 470 (499)
++..+...++.||++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~ 184 (485)
T TIGR00711 167 IIVVVVAFFILPRDKPAA 184 (485)
T ss_pred HHHHHHHHHHcCCccccc
Confidence 777777777778765443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.3e-09 Score=102.41 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=105.9
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
...|.+.++.|.+..+.+...+... .+..++.+..|++.||+|||+++.........+.+.. . ...+ ..
T Consensus 12 ~~lp~i~~~~~~s~~~~g~~~s~~~-~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~---~-~~~~------~~ 80 (368)
T TIGR00903 12 PVLSLVAEDIDVSKEELGLLAITYP-AAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL---L-DPFN------YE 80 (368)
T ss_pred hhHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH---H-Hhcc------HH
Confidence 3567788888998877777655444 4578889999999999999987654333222221111 1 0000 11
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 455 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 455 (499)
. +...-+..+. +.+.........+|.+|++.|+++.++......++..+++.....+.+..+|+..|++.+++.++.
T Consensus 81 ~--l~~~R~l~G~-g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 81 W--LLACQLLAAL-GQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG 157 (368)
T ss_pred H--HHHHHHHHHh-HhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 1 1111111111 111122333455799999999999999999999999888877777778889999999988888888
Q ss_pred HHHHHHhcccCCC
Q 010848 456 VVFVILFVPETQG 468 (499)
Q Consensus 456 ~~~~~~~~pet~~ 468 (499)
.+..++++||++.
T Consensus 158 ~~~~~~~lp~~p~ 170 (368)
T TIGR00903 158 IILVLAALPALPF 170 (368)
T ss_pred HHHHHHHcCCCCC
Confidence 7777888898653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=100.34 Aligned_cols=137 Identities=14% Similarity=0.053 Sum_probs=114.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHH
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVY 148 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~ 148 (499)
+....+...+...++.+++.++.+++.||+|+|+.+.++.+...+...+.+++++.+.+++.++++|++.|...+....+
T Consensus 238 s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~ 317 (382)
T TIGR00902 238 SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRY 317 (382)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcCcccchhhHhH-HHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 149 IAEASPSEVRGGLVSTNV-LMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 149 i~e~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
+.+. |+++|+...+.+. ....+|..+++.+++.+.+.. ++ ..|++.+..+++.+++.
T Consensus 318 i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 318 IAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHH
Confidence 9998 9999988888765 466788899999888887654 35 45666666565554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.00 E-value=9e-07 Score=85.49 Aligned_cols=319 Identities=18% Similarity=0.151 Sum_probs=170.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHHHH-HHHHHHHHHHHHh-----cC--------ch---hH
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWINDAYG-----RKKATLLA-DVVFTAGAIIMAA-----AP--------DP---YV 126 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~G-----rr~~l~~~-~~l~~~~~~~~~~-----a~--------s~---~~ 126 (499)
.++..+..++...+-. ...+.+|+.+|+.+ ||..+++. .++...+..+..+ +. .+ ..
T Consensus 13 pA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~ 91 (403)
T PF03209_consen 13 PAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLAL 91 (403)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHH
Confidence 4454555555555544 45788999999999 88765544 4444443333222 22 21 23
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhH--HHHHH
Q 010848 127 LILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAV--PAIIQ 204 (499)
Q Consensus 127 li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~--~~~l~ 204 (499)
....-.+.|+|.+...+...++++|..|+|+|++..++.......|.+++......+.+....=|..-.+... ..++.
T Consensus 92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l 171 (403)
T PF03209_consen 92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLL 171 (403)
T ss_pred HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999998888899999887766554432223333333222 22222
Q ss_pred HHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHH
Q 010848 205 FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQA 284 (499)
Q Consensus 205 ~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (499)
-++-.+=.|.++....+.++++ +..-...+++++.+|+.++.+.... +..
T Consensus 172 ~~ia~wg~E~r~~~~~~~~~~~-----------------------------~~~f~~a~~~~~~~~~a~~f~~fl~-l~t 221 (403)
T PF03209_consen 172 NLIALWGQEPRRSRRAAAAERP-----------------------------RPPFREAWRQVWASPQARRFFVFLF-LGT 221 (403)
T ss_pred HHHHHHhcccCCcccccCCCCC-----------------------------CccHHHHHHHHHhCCChhHHHHHHH-HHH
Confidence 2222222333211000000000 0000112344455555444332211 111
Q ss_pred HHhccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChHHHHHhhHHHHHHHHHHHHHHh
Q 010848 285 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID-HFGRKKLALSSLAGVIISLVLLSWAFI 363 (499)
Q Consensus 285 ~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~i~~~~~~~~~~ 363 (499)
+. ++.-. ...-|+=-+..|.+..+...+. ....++.++|....+++.. |.++++....+.....+++.++.....
T Consensus 222 ~a-~~~QD--~iLEPygg~Vfgmsv~eTT~Lt-a~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~ 297 (403)
T PF03209_consen 222 LA-FFMQD--VILEPYGGEVFGMSVGETTRLT-AFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP 297 (403)
T ss_pred HH-HHhhH--HHcCCchhHHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 00000 1123554566788877766554 4445556888888887776 677777777777766666666554432
Q ss_pred hCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 010848 364 SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQT 431 (499)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~ 431 (499)
..+ .+..-..++.+++....+.. ...+...++.+++..+...|.-...|.+..-++...
T Consensus 298 ~~~-----~~~~~~~~~l~G~g~G~f~v----gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~ 356 (403)
T PF03209_consen 298 LGS-----PWLFRPGVFLLGLGNGLFTV----GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFL 356 (403)
T ss_pred ccc-----chHHHHHHHHHHHhhhHHHH----HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 221 11111111222222222222 122344577777778888887777766554444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=101.37 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=113.2
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD-PYVLILGRLL 133 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s-~~~li~~R~l 133 (499)
-+|....+++. +....+...+.+.++..+|.++.|++.||+|||+.+..+..+..++..+....++ ...+. -++
T Consensus 227 ~lp~~l~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l 301 (393)
T PRK09705 227 WLPAFYIEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMV 301 (393)
T ss_pred HHHHHHHHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHH
Confidence 34444444432 3333467888999999999999999999999999998888777776655443333 22222 356
Q ss_pred HHhhhhhhhhhHHHHHhhcCC-cCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH-HHhc
Q 010848 134 VGLGVGIASVTAPVYIAEASP-SEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFM 211 (499)
Q Consensus 134 ~Gig~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~-~~~l 211 (499)
.|++.+...+.......+..+ +|+||+..+.......++..+++.+.+.+.+..++|+..|++.+...++..+. ..+.
T Consensus 302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 788888888877777777775 57889998888888888888888887777665566888888887766655544 4566
Q ss_pred cCChh
Q 010848 212 PESPR 216 (499)
Q Consensus 212 pesp~ 216 (499)
||++.
T Consensus 382 ~~~~~ 386 (393)
T PRK09705 382 PARFP 386 (393)
T ss_pred ccccc
Confidence 87653
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-08 Score=103.18 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=106.8
Q ss_pred chhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc--Cc-hh-HH
Q 010848 52 ISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA--PD-PY-VL 127 (499)
Q Consensus 52 i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a--~s-~~-~l 127 (499)
+..-.|++.++.+...... .+......++..++.++.|++.||+|||+.++.+.++..++.++.+.. ++ .. ..
T Consensus 290 ~~~~~p~i~~~~g~~~~~~---~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 290 VLYYAPEIFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred HHHHHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence 3344566666665433222 234445667778999999999999999999999999988887766543 12 11 22
Q ss_pred HHHHHHHHhhhhh-hhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc-----CCCCchHHHHHhhhHHH
Q 010848 128 ILGRLLVGLGVGI-ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT-----EVPGTWRWMLGVSAVPA 201 (499)
Q Consensus 128 i~~R~l~Gig~g~-~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~-----~~~~~Wr~~f~~~~~~~ 201 (499)
..+-++.+++.+. ..+....+++|.+|+++|+...+.......+|..+++.+..... ....+|++.|++.++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 446 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence 3334444544443 33677899999999999999999888877777777654433222 01235888888877766
Q ss_pred HHHHHHH-HhccCCh
Q 010848 202 IIQFVLM-LFMPESP 215 (499)
Q Consensus 202 ~l~~~~~-~~lpesp 215 (499)
++..++. ++.||+.
T Consensus 447 ~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 447 VLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHhccccCC
Confidence 6655554 4567764
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=102.95 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHh
Q 010848 71 FLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA 150 (499)
Q Consensus 71 ~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~ 150 (499)
...+++.+...+|..+|.++.+++.||.++++.+..+.++.+++.++..+.++.....+..++.|++.+...+...+++.
T Consensus 259 ~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 338 (417)
T PRK10489 259 AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQ 338 (417)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999999999999999988888888888888888878888888888888999999999888888889999
Q ss_pred hcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHH-HHHHHHhccCCh
Q 010848 151 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAII-QFVLMLFMPESP 215 (499)
Q Consensus 151 e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l-~~~~~~~lpesp 215 (499)
|..|++.||+..+........|..+++.+.+.+.+.. +++..+++.+...++ ..+.....||.+
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 339 TQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-TPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred hhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999998888889999998887776543 466677665554444 344445566654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-08 Score=101.33 Aligned_cols=134 Identities=15% Similarity=0.131 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 010848 72 LQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAE 151 (499)
Q Consensus 72 ~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e 151 (499)
..++..+...++..+++++.|++.||+|||+++..+..+..++..... + .......+++.|++.+...|....++.|
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~ 312 (381)
T PRK03633 236 SIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWACE 312 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence 356778888899999999999999999999999888888777665433 2 2344567888998888888999999999
Q ss_pred cCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH
Q 010848 152 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209 (499)
Q Consensus 152 ~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~ 209 (499)
..|+++++...+.......+|..+++.+++.+.+.. +|++.|.+.+...++..+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 313 KVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHH
Confidence 999988877777777778899999998888776543 599999987776665554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-08 Score=100.09 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=116.2
Q ss_pred hhhHHhhh-hhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 010848 53 SGALLYIK-DDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGR 131 (499)
Q Consensus 53 ~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R 131 (499)
..-+|... ++++. +....+...+.+.++..+|.++.|+++||+|||+.+.....+..+...+....++...+.+.-
T Consensus 225 ~~~~p~~l~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (394)
T PRK03699 225 ISWVPEYAQKKFGM---SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAI 301 (394)
T ss_pred HHHHHHHHHHHcCC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 33445433 44443 222346678888899999999999999999999998888877777666666777887777888
Q ss_pred HHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhc
Q 010848 132 LLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM 211 (499)
Q Consensus 132 ~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~l 211 (499)
++.|++.+...+....+..|..|.+ ++...+.......+|..+++.+.+.+.+.. +|+..+++.++..++..+...++
T Consensus 302 ~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 302 LGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CchhhhhhhHHHHHHHHHHHHHH
Confidence 9999988888888888888877644 566677777777788888888877665543 59999988887766665555554
Q ss_pred c
Q 010848 212 P 212 (499)
Q Consensus 212 p 212 (499)
+
T Consensus 380 ~ 380 (394)
T PRK03699 380 G 380 (394)
T ss_pred H
Confidence 4
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=103.96 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=102.0
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
...|.+.+ .|.+..+.+...+... .+..++.++.|++.||+|||+.+..+.....++........ ... ..
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~--- 117 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAIS-IAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP----WAT-SS--- 117 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHH-HHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc----ccc-ch---
Confidence 34565554 5888777776655544 45788999999999999999987766555554444332210 000 00
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchhhHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA-ELVGTGATFLILAGIAVL 454 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~-~~~~~~~~f~~~~~~~~~ 454 (499)
...+....+..........+.......|.+|++.|+++.++.+....+++.+++....... +..+|+..|++.+.++++
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i 197 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII 197 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1111111111111111122334456678999999999999988888888777666554333 346788899988888888
Q ss_pred HHHHHHHhcccCC
Q 010848 455 AVVFVILFVPETQ 467 (499)
Q Consensus 455 ~~~~~~~~~pet~ 467 (499)
..+..+++.||++
T Consensus 198 ~~~~~~~~~~~~~ 210 (438)
T TIGR00712 198 VALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHhccCCH
Confidence 7777777778764
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-09 Score=99.84 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=123.7
Q ss_pred ehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 294 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 294 ~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
+..-.|.+.++.+++-.+.+.+.+... ...-++-++.|.++||.+.|..+..+++.+.++.+++.+...
T Consensus 48 F~~a~p~l~e~~~lsk~~lG~i~s~f~-i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s---------- 116 (448)
T COG2271 48 FNLAMPALIEDGGLSKTQLGILGSAFS-ITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPS---------- 116 (448)
T ss_pred HhhccHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhH----------
Confidence 334557888888898888887665544 458899999999999999999988888888777777665321
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCchhhHHHHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF--LTVAELVGTGATFLILAGI 451 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~--~~~~~~~~~~~~f~~~~~~ 451 (499)
...+..+......+...-+|...-..+.-||++.||+..++-++.+++++.+.+.+. ..+..+.+|+..|++-+++
T Consensus 117 --~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgii 194 (448)
T COG2271 117 --LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGII 194 (448)
T ss_pred --HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 111222222233333223455566778889999999999999999999998888777 6666777899999998888
Q ss_pred HHHHHHHHHHhcccCCC-CCHHHHHHHhhc
Q 010848 452 AVLAVVFVILFVPETQG-LTFLEVEQMWKE 480 (499)
Q Consensus 452 ~~~~~~~~~~~~pet~~-~~l~~~~~~~~~ 480 (499)
+++..++.++..++|.+ .-+..+++..+|
T Consensus 195 aiival~~~~~~rd~Pqs~GLP~ie~~~~d 224 (448)
T COG2271 195 AIIVALILLFLLRDRPQSEGLPPIEEYRGD 224 (448)
T ss_pred HHHHHHHHHHHhCCCccccCCCCHHHhhcC
Confidence 88888877777655422 233344554433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=97.08 Aligned_cols=159 Identities=20% Similarity=0.198 Sum_probs=118.0
Q ss_pred eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 293 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 293 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
...-.+|.+-++.+.+....+++.+.... +..++.++-..+.||++||++++..+....++-++..+...
T Consensus 31 v~~gLLp~iA~dl~vs~~~aG~lis~yAl-~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~--------- 100 (394)
T COG2814 31 VPVGLLPPIAADLGVSEGAAGQLITAYAL-GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS--------- 100 (394)
T ss_pred HHHhchHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 33446788889999998888887766554 46888888889999999999988776666666555443211
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 452 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (499)
+... ...=+..........++..++..++.|+++|+++.++..+-..+...++...-..+.+..||+.+|.+.+++.
T Consensus 101 -f~~L--l~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ 177 (394)
T COG2814 101 -FAVL--LLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLA 177 (394)
T ss_pred -HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111 1111122222223345667788999999999999999988887777777666667789999999999999999
Q ss_pred HHHHHHHHHhcc
Q 010848 453 VLAVVFVILFVP 464 (499)
Q Consensus 453 ~~~~~~~~~~~p 464 (499)
++..+..+..+|
T Consensus 178 ll~~~~~~~~lP 189 (394)
T COG2814 178 LLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHhCC
Confidence 999999999999
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=101.47 Aligned_cols=159 Identities=21% Similarity=0.195 Sum_probs=110.9
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhH
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 376 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 376 (499)
..|.+.++.|.++.+.+...+... .+..++.++.|+++||+|||+.+..+.....++....... . + . +
T Consensus 13 ~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---~-~------~-~ 80 (377)
T PRK11102 13 ALPVIAADFGVSAGSVQMTLSAYI-LGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---Q-T------I-D 80 (377)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH---c-c------H-H
Confidence 456777888888777776655544 4578899999999999999999887776666655544322 1 0 1 1
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 010848 377 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
.... ..+...+......+...++..|.+|++.|+++.++......++..+++.....+.+..+|+..|++.+.+.++..
T Consensus 81 ~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 159 (377)
T PRK11102 81 QLIY-MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAA 159 (377)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 1111 111112222223345557788999999999999999988888888888777777777888888888888887777
Q ss_pred HHHHHhcccCCC
Q 010848 457 VFVILFVPETQG 468 (499)
Q Consensus 457 ~~~~~~~pet~~ 468 (499)
+...++.||+++
T Consensus 160 ~~~~~~~~~~~~ 171 (377)
T PRK11102 160 ALVFFFIPETLP 171 (377)
T ss_pred HHHHHhCCccCc
Confidence 766677788643
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=105.43 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCch--hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCc
Q 010848 78 SMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP--YVLILGRLLVGLGVGIASVTAPVYIAEASPS 155 (499)
Q Consensus 78 s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~--~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~ 155 (499)
....+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++. ...++.-++.+++.+...+....+.+|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34456667888999999999999999999999988888888777654 4555666777788888888999999999999
Q ss_pred CcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccCCh
Q 010848 156 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESP 215 (499)
Q Consensus 156 ~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpesp 215 (499)
+.|+..++.......+|.+++|.+.. ... .++...+++.+...++..+..+++||+.
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-LGE--KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-HHH--HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999998888899999988766 322 2356677777777777767777889874
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=100.84 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=106.8
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhH
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 376 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 376 (499)
..|.+.++.|.+..+.+...+... .+..++.++.|++.||+|||+.+..+.....++.++.... . + . +
T Consensus 25 ~l~~~~~~~g~s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~---~-~------~-~ 92 (382)
T PRK10091 25 VLTELAHDVGISIPAAGHMISYYA-LGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS---S-S------Y-L 92 (382)
T ss_pred ChHHHHHHcCCCHHHHhHHHHHHH-HHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh---C-c------H-H
Confidence 557778888988777776665544 4578999999999999999999887776666555444321 1 0 1 1
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 010848 377 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
.... ..+..+.......+....+..|.+|++.|+++.+.......++..+++.....+.+..+|+..|.+.+.+.++..
T Consensus 93 ~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~ 171 (382)
T PRK10091 93 MLAI-GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVL 171 (382)
T ss_pred HHHH-HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 1111 111111111111233345677889999999988888777777777776666666677789989998888777776
Q ss_pred HHHHHhcccCCC
Q 010848 457 VFVILFVPETQG 468 (499)
Q Consensus 457 ~~~~~~~pet~~ 468 (499)
+..+++.||.++
T Consensus 172 ~~~~~~lp~~~~ 183 (382)
T PRK10091 172 ASIYFWVPDIRD 183 (382)
T ss_pred HHHHHhCCCCCc
Confidence 666677888654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=103.92 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=92.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHH
Q 010848 309 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 388 (499)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (499)
..+.+...+... .+..++.++.|++.||+|||+.+..+.....++.++..... . .. . . +..++ ..++.+.
T Consensus 70 ~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~-~~--~--~-~~~~~-~r~l~G~ 139 (481)
T TIGR00879 70 SSLWGLVVSIFL-VGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA--F-AL--S--V-EMLIV-GRVLLGI 139 (481)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--c-cc--c--h-HHHHH-HHHHHHh
Confidence 555565555444 45789999999999999999998777666555544443211 1 00 0 0 11111 1111222
Q ss_pred HhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHcCCchhhHHHHHHHHHHHHHHHHhccc
Q 010848 389 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF---LTVAELVGTGATFLILAGIAVLAVVFVILFVPE 465 (499)
Q Consensus 389 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pe 465 (499)
......+....+..|.+|++.|+++.++......++..+++... ....+..+|+..|.+.+...++. +...+++||
T Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~ 218 (481)
T TIGR00879 140 GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPE 218 (481)
T ss_pred hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence 22233455667889999999999999998888888887776655 22224457777787754444433 444567788
Q ss_pred CC
Q 010848 466 TQ 467 (499)
Q Consensus 466 t~ 467 (499)
+.
T Consensus 219 ~~ 220 (481)
T TIGR00879 219 SP 220 (481)
T ss_pred Ch
Confidence 74
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=101.72 Aligned_cols=143 Identities=21% Similarity=0.174 Sum_probs=96.2
Q ss_pred ehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 294 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 294 ~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
..+..|.+.++.|.++.+.+...+... .+..++.++.|++.||+|||+.+..+.....++..+......
T Consensus 37 ~~~~~~~i~~~~~~s~~~~~~~~~~~~-~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---------- 105 (426)
T PRK12307 37 IFYIMYLIKADLGLTDMEGAFLATAAF-IGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG---------- 105 (426)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH----------
Confidence 344556777788888777666655544 457889999999999999999988777666666554433210
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA 449 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~ 449 (499)
. +. +...-+..+.......+....+..|.+|++.|+++.++......++..+++...+.+.+..+|+..|++..
T Consensus 106 ~-~~-l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 106 V-IM-LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred H-HH-HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 1 11 11111112222222345556778899999999999999888888888877777666667778887777643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=104.99 Aligned_cols=163 Identities=17% Similarity=0.106 Sum_probs=110.6
Q ss_pred ehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 294 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 294 ~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
+..-.|.+.++.|.+..+.++..+.. ..+...+.+..|+++||+|||+.+..+.....++.+..... . +
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~-~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a---~-~------ 93 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIY-SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS---P-T------ 93 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc---C-C------
Confidence 34456888888888777766665543 34467778889999999999999888776666555444321 1 0
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccC-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 452 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (499)
. +..+. .-...+.......+.......+.+ |++.|+++.|+......++..+++.....+.+..+|++.|++...+.
T Consensus 94 ~-~~li~-~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~ 171 (495)
T PRK14995 94 A-SWLIA-TRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIV 171 (495)
T ss_pred H-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Confidence 1 11111 111112222222333334444554 77899999999999999999899888888888889999999888888
Q ss_pred HHHHHHHHHhcccCCCC
Q 010848 453 VLAVVFVILFVPETQGL 469 (499)
Q Consensus 453 ~~~~~~~~~~~pet~~~ 469 (499)
++..+...+++||.+++
T Consensus 172 ~~~~~l~~~~l~~~~~~ 188 (495)
T PRK14995 172 LVVMGLTARYVPRQAGR 188 (495)
T ss_pred HHHHHHHHHhCCCCCCC
Confidence 87777777788876443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-08 Score=101.52 Aligned_cols=159 Identities=10% Similarity=0.058 Sum_probs=98.8
Q ss_pred ehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 294 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 294 ~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
...+.|.+.++.|.+..+.+...+. ...+..++.+++|++.||+|||+.+..+.+...++.++.... . +
T Consensus 55 ~~~~~~~l~~~~gls~~~~g~~~~~-~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~-s------ 123 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKSDIGNAGIA-SVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV---S-S------ 123 (476)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---c-C------
Confidence 3345677788889987776665443 444568889999999999999998876665555444433321 1 1
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HcCCchh
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---------LVGTGAT 444 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~---------~~~~~~~ 444 (499)
.....+. .+..++...... ....+.+|.+|++.|+++.|+.+....++..+++.+.+.+.. ..+|+..
T Consensus 124 ~~~l~~~--r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~ 200 (476)
T PLN00028 124 ATGFIAV--RFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA 200 (476)
T ss_pred HHHHHHH--HHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 1111111 111111111111 223467899999999999999888777777666555443322 1478889
Q ss_pred hHHHHHHHHHHHHHHHHhcccC
Q 010848 445 FLILAGIAVLAVVFVILFVPET 466 (499)
Q Consensus 445 f~~~~~~~~~~~~~~~~~~pet 466 (499)
|++.+++.++..+..+++.++.
T Consensus 201 f~i~g~l~l~~~l~~~~~~~~~ 222 (476)
T PLN00028 201 FFVPGLLHIIMGILVLTLGQDL 222 (476)
T ss_pred HHHHHHHHHHHHHHHHHHcCcC
Confidence 9988888877766655554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-07 Score=86.50 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHH-HHhhc
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPV-YIAEA 152 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~-~i~e~ 152 (499)
+.+....+...++..++.|.++||+|||+.-+.-+++++++++ +-..+++..++++|++-|++......+-.+ ++.|.
T Consensus 72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 72 AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566667777889999999999999999999998885 567789999999999999999999988877 45554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.8e-08 Score=97.27 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=102.9
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHH
Q 010848 298 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 377 (499)
Q Consensus 298 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 377 (499)
.|.+.++.|.++.+.+...+... ....++.++.|+++||+|||+.+..+.....++....... . + ....
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~-~------~~~l 99 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYL-LTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA---H-S------LTVL 99 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---c-c------HHHH
Confidence 56777888998877776655544 4478899999999999999998877665555554433221 1 0 1111
Q ss_pred HHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q 010848 378 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 457 (499)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 457 (499)
.. ..+..........+....+..|.++.+.|+.+.+.......++..+++.....+.+..+|+..|++.+...++..+
T Consensus 100 -~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 100 -IA-ASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred -HH-HHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 11 1111111111122344456678888888888888877777777767776666666777888888887777766655
Q ss_pred HHHHhcccCCCC
Q 010848 458 FVILFVPETQGL 469 (499)
Q Consensus 458 ~~~~~~pet~~~ 469 (499)
...++.||++.+
T Consensus 178 ~~~~~~~~~~~~ 189 (394)
T PRK11652 178 SMARWMPETRPA 189 (394)
T ss_pred HHHHhCCccCcc
Confidence 556677887543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-07 Score=89.38 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcC
Q 010848 77 VSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 156 (499)
Q Consensus 77 ~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~ 156 (499)
.++....+.+..++.+.+.|+.|.|+.+.++...+...-... +-+|-+.++.+-.+.|+|.+..+.....|++|.+++|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf-l~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF-LFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH-HhcchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 566777778888999999999999999999999998776654 4456778889999999999999999999999999999
Q ss_pred cccchhhHhHHHHHHHHHHHHHhh
Q 010848 157 VRGGLVSTNVLMITSGQFLSYLVN 180 (499)
Q Consensus 157 ~Rg~~~~~~~~~~~~G~~l~~~~~ 180 (499)
.+.+..+........+.+.|...-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999888887777777777665443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=102.96 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC----chhHHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 010848 78 SMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP----DPYVLILGRLLVGLGVGIASVTAPVYIAEAS 153 (499)
Q Consensus 78 s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~----s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~ 153 (499)
....++.++|.++.+++.||+|||+.++++..+.+++..+.++.. +...+...-+...++..+..+....+.+|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 344567777889999999999999999888877776665554321 1112221111122222234456677889999
Q ss_pred CcCcccchhhHhHHHHHHHHHHHHHhhhhccCCC---------CchHHHHHhhhHHHHHHHHHHHhccCChh
Q 010848 154 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVP---------GTWRWMLGVSAVPAIIQFVLMLFMPESPR 216 (499)
Q Consensus 154 p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~---------~~Wr~~f~~~~~~~~l~~~~~~~lpesp~ 216 (499)
|.+.|++..+.......+|..+++.+...+.+.. .+++..|++.++..++..+..+++||+..
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence 9999999999988888888888877655443321 12455667666666665555567799753
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-08 Score=101.21 Aligned_cols=162 Identities=12% Similarity=0.095 Sum_probs=109.4
Q ss_pred eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 293 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 293 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
......|.+.++.|.+..+.+...+. ...+..++.++.|++.||+|||+....+.....++.+..... .+
T Consensus 28 ~~~~~~p~~~~~~g~s~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~----- 97 (471)
T PRK10504 28 IVNTALPSMAQSLGESPLHMHMVIVS-YVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS----GT----- 97 (471)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh----CC-----
Confidence 34456788888899887776665544 344467889999999999999998876655544444332211 10
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 452 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (499)
. +. +....+..........+...++..|.+|++.|+++.+.......++..+++.....+.+..+|++.|.+.....
T Consensus 98 -~-~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 98 -L-NE-LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred -H-HH-HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 1 11 11111112222222345556777899999999999999988888888888887777778888888888887777
Q ss_pred HHHHHHHHHhcccCC
Q 010848 453 VLAVVFVILFVPETQ 467 (499)
Q Consensus 453 ~~~~~~~~~~~pet~ 467 (499)
.+..+......|+.+
T Consensus 175 ~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 175 IIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHHHHHHhCCCcc
Confidence 777666666667654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-08 Score=97.44 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=102.5
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
...|.+..+.+.+..+.+...+... ....++.++.|+++||+|||+.+..+.....++..+......... .+ .
T Consensus 20 ~~~~~~~~~~~~s~~~~g~~~~~~~-~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~- 92 (365)
T TIGR00900 20 VALPLYVLAGTGSASVLSLAALAGM-LPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG---LN--I- 92 (365)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH-HHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC---Cc--H-
Confidence 3456677777777777666655544 446888999999999999999987766555554444333221110 00 1
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 455 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 455 (499)
+...... +..........+...++..|.+|++.|+++.+.......++..+++.....+.+..+|+..|++.+...++.
T Consensus 93 ~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 93 WQVYVLA-GILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAIS 171 (365)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111111 111122222345556788999999999999999999999998888887777777788888887776666555
Q ss_pred HHHHH
Q 010848 456 VVFVI 460 (499)
Q Consensus 456 ~~~~~ 460 (499)
.+..+
T Consensus 172 ~~~~~ 176 (365)
T TIGR00900 172 ALLIV 176 (365)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-08 Score=96.89 Aligned_cols=168 Identities=18% Similarity=0.245 Sum_probs=131.3
Q ss_pred hhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHHHHHHH
Q 010848 42 GLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRK--KATLLADVVFTAGAIIMA 119 (499)
Q Consensus 42 ~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr--~~l~~~~~l~~~~~~~~~ 119 (499)
-..+|++. ++.....+..++++....+ ...+.-...+...+|++++|++.||+|.| ++++.+++++.+..+...
T Consensus 292 l~~dg~~t-i~~~~~i~a~~~lg~s~~~---l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~ 367 (477)
T PF11700_consen 292 LYSDGVNT-IISFAGIYATEVLGMSTTQ---LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGL 367 (477)
T ss_pred HHHHHHHH-HHHHHHHHHHHhcCcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence 34567764 4444445556666653322 23344456677789999999999999999 899999988877666655
Q ss_pred h--------cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchH
Q 010848 120 A--------APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWR 191 (499)
Q Consensus 120 ~--------a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr 191 (499)
+ .++.+.+.+.-++.|+..|...+...++.+|..|+++.+.+.+++....-....+||++-+.+.+..++-|
T Consensus 368 ~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r 447 (477)
T PF11700_consen 368 FGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQR 447 (477)
T ss_pred HHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 5 67788899999999999999999999999999999999999999999988999999998777776666688
Q ss_pred HHHHhhhHHHHHHHHHHHhccC
Q 010848 192 WMLGVSAVPAIIQFVLMLFMPE 213 (499)
Q Consensus 192 ~~f~~~~~~~~l~~~~~~~lpe 213 (499)
+.+....+..++.+++..++++
T Consensus 448 ~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 448 YGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred hHHHHHHHHHHHHHHHHhhccc
Confidence 8888777766666666655554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-08 Score=100.51 Aligned_cols=129 Identities=18% Similarity=0.111 Sum_probs=97.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 70 SFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA--PDPYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 70 ~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a--~s~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
....++..+...++..+|.++.|+++||+|||+++..+..+..++.++.... .+...+.+..++.|....+..+..+.
T Consensus 310 ~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (496)
T PRK03893 310 PHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPK 389 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHH
Confidence 3445778899999999999999999999999999888877766665544433 23344445566655544445567778
Q ss_pred HHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhH
Q 010848 148 YIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAV 199 (499)
Q Consensus 148 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~ 199 (499)
++.|.+|+++||..++.......+|..+++.+++.+.+.. +|+..+...+.
T Consensus 390 ~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~~~~~~~~~ 440 (496)
T PRK03893 390 LIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLGTALASLSF 440 (496)
T ss_pred HHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChHHHHHHHHH
Confidence 9999999999999999988888889999998887776644 48877765543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-08 Score=97.01 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=104.7
Q ss_pred hhchHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 295 MYYSPTI-VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 295 ~~~~p~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
..+.|.+ .++.|.+....+...+.... ...+..+++|+++||+|||+.+..+.....++....... ++
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l-~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~----~~------ 98 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQF-IQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA----HE------ 98 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh----cc------
Confidence 3344444 46778887777766655443 356667889999999999999887776666655544321 10
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV 453 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 453 (499)
. +..... .+..........+...++..|.+|++.|+++.|+......++..+++.....+. ..+|+..|++.++..+
T Consensus 99 ~-~~l~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~ 175 (400)
T PRK11646 99 P-WLLWLS-CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFV 175 (400)
T ss_pred H-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 1 111111 111111111223445567789999999999999999999999888888777766 5678888888777777
Q ss_pred HHHHHHHHhcccC
Q 010848 454 LAVVFVILFVPET 466 (499)
Q Consensus 454 ~~~~~~~~~~pet 466 (499)
+..+...++.||.
T Consensus 176 ~~~i~~~~~~~~~ 188 (400)
T PRK11646 176 LAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHhCCcc
Confidence 6655555666764
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=99.55 Aligned_cols=160 Identities=23% Similarity=0.326 Sum_probs=108.7
Q ss_pred chH-HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 297 YSP-TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 297 ~~p-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
..| .+.++.|.+..+.+...+... ....++.++.|+++||+|||+.+..+.....++..+..+. .+ .
T Consensus 18 ~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----~~------~- 85 (352)
T PF07690_consen 18 ALPLYLAEELGLSPSQIGLLFSAFF-LGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA----SN------F- 85 (352)
T ss_dssp HHH-HHHCCSTTTSHCHHHHHHHHH-HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH----CC------H-
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh----hh------H-
Confidence 445 555677888888777665544 4578999999999999999998887777766663333321 11 1
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 455 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 455 (499)
+ .+....+..........+....+..|.+|++.|+++.+.......++..+++.....+.+..+|+..|++.+++.++.
T Consensus 86 ~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 86 W-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIA 164 (352)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred H-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhh
Confidence 1 112222222222233456667888999999999999999999999998888777776666777888999999888888
Q ss_pred HHHHHHhcccCCCC
Q 010848 456 VVFVILFVPETQGL 469 (499)
Q Consensus 456 ~~~~~~~~pet~~~ 469 (499)
.+...++.++++.+
T Consensus 165 ~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 165 AILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHCCC---STT
T ss_pred hhhHhhhhhhcccc
Confidence 77544555554433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=93.64 Aligned_cols=135 Identities=15% Similarity=0.066 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHh
Q 010848 71 FLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA 150 (499)
Q Consensus 71 ~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~ 150 (499)
...+...+...++..++.++.|++.||+|+|+.+..+.....++.++.+.+++.+.+++..++.|++.+...+....++.
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 319 (382)
T PRK11128 240 STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIA 319 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777778888889999999999999999999999998888888888999999999999999999999999999999
Q ss_pred hcCCcCcccchhhHhH-HHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 151 EASPSEVRGGLVSTNV-LMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 151 e~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
+. +++++++..+... .....|..+++.+++.+.+..+ + ..|+..+..+++.+++.
T Consensus 320 ~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 320 AR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFIR 375 (382)
T ss_pred HC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHHH
Confidence 87 5555677777664 4455677888888877766443 5 35665555555544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-08 Score=82.53 Aligned_cols=132 Identities=23% Similarity=0.306 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccccccccccc
Q 010848 323 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS 402 (499)
Q Consensus 323 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (499)
+..++.++.+++.||+|||+.+..+.....++....... . + . +...... +..........+..+.+..
T Consensus 10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~-~------~-~~~~~~~-~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---S-N------I-TVLIIAR-FLQGFGAAFALVAGAALIA 77 (141)
T ss_pred HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---c-c------H-HHHHHHH-HHHHHHHHHHHHhHHHHHH
Confidence 457788889999999999998876655555444333221 1 0 1 1111111 1111222223456667889
Q ss_pred ccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccC
Q 010848 403 EVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPET 466 (499)
Q Consensus 403 e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet 466 (499)
|.+|++.|++..+.......++..+++.....+.+..+++..+.+.+...++..+..+++.|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999988888888777777787788888888887777777777765
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-08 Score=95.98 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=106.2
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-HHHHHHHHHHHHHHh-----cCchhHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATL-LADVVFTAGAIIMAA-----APDPYVLI 128 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~-~~~~l~~~~~~~~~~-----a~s~~~li 128 (499)
-.|...++++. +....+...+...++..++.++.|+++||+|||+.+. .+.+...++++.... .++.+.++
T Consensus 244 ~~p~~~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 320 (402)
T TIGR00897 244 FLPMFVAELGF---STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL 320 (402)
T ss_pred HHHHHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH
Confidence 44555555543 2222356677788999999999999999999998764 333333333333322 24566777
Q ss_pred HHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 129 LGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 129 ~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
+..++.|++.+...+. ...+.|..| ++||+..+.......+|..++|.+.+.+.+.. +|+..|++.++..++..++.
T Consensus 321 ~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 321 IIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-GAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHH
Confidence 8899999988876554 456677655 57999999999999999999998877776644 58999998887776655554
Q ss_pred Hh
Q 010848 209 LF 210 (499)
Q Consensus 209 ~~ 210 (499)
.|
T Consensus 398 ~~ 399 (402)
T TIGR00897 398 AF 399 (402)
T ss_pred HH
Confidence 44
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=93.56 Aligned_cols=161 Identities=20% Similarity=0.253 Sum_probs=99.7
Q ss_pred ehhchHH-HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 294 VMYYSPT-IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 294 ~~~~~p~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
...+.|. +.++.|.+..+.+...+... .+..++.++.|+++||+|||+.+..+.....++.++..... .
T Consensus 20 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~---~------ 89 (366)
T TIGR00886 20 FSPLAVQMIKDDLGLSTAQLGNLVAVPV-LAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV---Q------ 89 (366)
T ss_pred hHHhhhHHHHHHhCCCHHHhhHhhHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh---h------
Confidence 3445674 56788998877776665544 45789999999999999999998877766666655443321 0
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HcCCc
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE----------LVGTG 442 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~----------~~~~~ 442 (499)
.+ +...+. .+..... .+..+....+..|.+|++.|+++.++......++..+++.+.+.+.+ ..+|+
T Consensus 90 ~~-~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~ 166 (366)
T TIGR00886 90 SY-SVLLLL-RLFIGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG 166 (366)
T ss_pred hH-HHHHHH-HHHHHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 01 111111 1111111 12223345677899999999999999887777777666665554433 23677
Q ss_pred hhh-HHHHHHHHHHHHHHHHhcccCC
Q 010848 443 ATF-LILAGIAVLAVVFVILFVPETQ 467 (499)
Q Consensus 443 ~~f-~~~~~~~~~~~~~~~~~~pet~ 467 (499)
+.| ...+.+..+..+..+.+.||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCC
Confidence 777 3335555444444455556543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-08 Score=98.64 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=126.3
Q ss_pred chhhHHhhhhh-hccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 010848 52 ISGALLYIKDD-FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILG 130 (499)
Q Consensus 52 i~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~ 130 (499)
+...+|.+.++ ++ .++...|++.+...+|.++|+++.+++.+|+++++.+..+.++++++.+..+++++.+...+.
T Consensus 237 ~~aLlPl~a~~~l~---~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~ 313 (524)
T PF05977_consen 237 VWALLPLFARDVLG---GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA 313 (524)
T ss_pred HHHhhhHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34456776544 43 344556899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH
Q 010848 131 RLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 131 R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~ 207 (499)
-++.|++.....+...+.+.+..|++.||+.++.+......+..+|.++.+.+.+.. +-+..+.+.++..++..++
T Consensus 314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHH
Confidence 999999999999899999999999999999999999888888888888877776543 4677777766544444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=94.33 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 010848 72 LQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAE 151 (499)
Q Consensus 72 ~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e 151 (499)
..+...+...+...++.+..|++.||+|||+.+.++.++.+++..+...+++.+.+++.++++|++.+........+..|
T Consensus 255 ~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 334 (396)
T TIGR00882 255 VFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITS 334 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888899999999999999999999999988888777888899999999999999988777777778888
Q ss_pred cCCcCcccchhhH-hHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH
Q 010848 152 ASPSEVRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 152 ~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~ 207 (499)
..|++.|+...+. .+....+|..+++.+++.+.+.. ||+..|.+.++..++..++
T Consensus 335 ~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 335 QFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred hCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHH
Confidence 8888888765544 45677788888888777776543 5999999887766554443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.1e-08 Score=97.06 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=103.1
Q ss_pred CcceehhchHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHHHHHHHHHhhCCC
Q 010848 290 GINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSS 367 (499)
Q Consensus 290 ~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 367 (499)
.++....++|.+++ ..|++..+.+..... ......++++++|+++||+ |||+.+..+.+...++..++... ...
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~-~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~---~~~ 99 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSA-YCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS---EIH 99 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh---hcc
Confidence 34455567777765 468877665555444 4445678899999999998 99999887776666554433211 000
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhh
Q 010848 368 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ--YRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATF 445 (499)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f 445 (499)
. .....++.+.... .....+...++..|.+|++ .|.++.++.+...++++.+++...+.+.+..||+..|
T Consensus 100 ----~---~~~~l~l~li~iG-~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F 171 (493)
T PRK15462 100 ----P---SFLYLSLAIIVCG-YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF 171 (493)
T ss_pred ----h---hHHHHHHHHHHHh-cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence 0 0111111111111 1112344557889999986 7999999999999999999999998888888998888
Q ss_pred HHHHHHHHHHHHH
Q 010848 446 LILAGIAVLAVVF 458 (499)
Q Consensus 446 ~~~~~~~~~~~~~ 458 (499)
.+.++..+++.+.
T Consensus 172 ~iaaigm~l~li~ 184 (493)
T PRK15462 172 GLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 8866655555444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=95.01 Aligned_cols=154 Identities=18% Similarity=0.134 Sum_probs=97.6
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHH
Q 010848 299 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 378 (499)
Q Consensus 299 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (499)
|.+.++.+.++.+.+...+.... +..++.+++|+++||+|||+.+..+.....++....... .+ ....
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~------~~~l- 97 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLA-GFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV----ES------AAQL- 97 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh----cC------HHHH-
Confidence 44567778887777776665544 468899999999999999998877665554444333221 10 1111
Q ss_pred HHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q 010848 379 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF 458 (499)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 458 (499)
.... +..........+....+..|.+|++.|++..+.......++..+++.....+.+..+|+..|++.+...++..+.
T Consensus 98 ~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 98 LVLR-FVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHH-HHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 1111 111111111123334567889999888888877777777777777777777777788888888887777766555
Q ss_pred HHHhcccC
Q 010848 459 VILFVPET 466 (499)
Q Consensus 459 ~~~~~pet 466 (499)
.++ .+|.
T Consensus 177 ~~~-~~~~ 183 (401)
T PRK11043 177 TLR-LKPS 183 (401)
T ss_pred HHH-cCCC
Confidence 444 4443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-07 Score=92.79 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=102.6
Q ss_pred HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHH
Q 010848 304 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 383 (499)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (499)
+.+++..+.+.+.+++... ..++.+..|++.||+|.|++...+.....+..+...+.. . +... .+....+...
T Consensus 64 ~~~ls~~q~g~l~ai~~l~-~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~--~-~~~~--s~~~lli~r~- 136 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVS-GALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV--Q-NPNT--PFGIFIVIAL- 136 (462)
T ss_pred hcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--c-ccCC--CHHHHHHHHH-
Confidence 6788888888777766554 567788889999999999988877766665555444321 0 0000 1111111111
Q ss_pred HHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHcC-------------Cchhh
Q 010848 384 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA-----ELVG-------------TGATF 445 (499)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~-----~~~~-------------~~~~f 445 (499)
..++. .+..+.....+++.||++.|+++.|+....++++..+...+.+.+. +..| ++..+
T Consensus 137 -l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~ 214 (462)
T PRK15034 137 -LCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAA 214 (462)
T ss_pred -HHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHH
Confidence 11111 1233445567789999999999999998777777766555544322 2222 33344
Q ss_pred HHHHHHHHHHHHHHHHhcccCC--CCCHHHHHHHhhcc
Q 010848 446 LILAGIAVLAVVFVILFVPETQ--GLTFLEVEQMWKER 481 (499)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~pet~--~~~l~~~~~~~~~~ 481 (499)
+++..+.++..+..+++.++.+ +++++|..+.+|++
T Consensus 215 ~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~ 252 (462)
T PRK15034 215 WIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRL 252 (462)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCC
Confidence 5666666666666666666543 34556665566554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-08 Score=99.36 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=104.3
Q ss_pred HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHH
Q 010848 304 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 383 (499)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (499)
+.+.+..+.+.+.+... .+..++.+++|++.||+|||+.+..+.....+..++...... .+ ...++...
T Consensus 70 ~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~--------~~~l~~~r 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHF-YGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--GG--------IALVVFCR 138 (465)
T ss_pred CCCCCHHHhhHHHHHHH-HHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--cC--------chHHHHHH
Confidence 34566666666555544 457899999999999999999887766555554443322111 00 11122222
Q ss_pred HHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHHHHHh
Q 010848 384 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
+..+.......+....+.+|.+|++.|+++.++......++..+++.+...+.+. .+|+..|++.+++.++..+..+.+
T Consensus 139 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 139 VIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 2333344445567778889999999999999999998889988888887777777 489999999888877776655555
Q ss_pred cccC
Q 010848 463 VPET 466 (499)
Q Consensus 463 ~pet 466 (499)
.||.
T Consensus 219 ~~~~ 222 (465)
T TIGR00894 219 PADD 222 (465)
T ss_pred hcCC
Confidence 5554
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=89.97 Aligned_cols=162 Identities=27% Similarity=0.392 Sum_probs=119.8
Q ss_pred HhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh
Q 010848 41 GGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA 120 (499)
Q Consensus 41 ~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~ 120 (499)
..+...++........+....+++..... ...++..+.+.++..++.++.|.++||+|||+.+..+......+.+.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T COG0477 10 AALLLGLDLGLLSPALPLLLSTLSLSSGR-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL 88 (338)
T ss_pred HHHHHHHhcchHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence 33444466666666666666555432110 34577889999999999999999999999999888888776777778888
Q ss_pred cCc--hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCc-CcccchhhHhHH-HHHHHHHHHHHhhhhccC-CCCchHHHHH
Q 010848 121 APD--PYVLILGRLLVGLGVGIASVTAPVYIAEASPS-EVRGGLVSTNVL-MITSGQFLSYLVNLAFTE-VPGTWRWMLG 195 (499)
Q Consensus 121 a~s--~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~-~~Rg~~~~~~~~-~~~~G~~l~~~~~~~~~~-~~~~Wr~~f~ 195 (499)
..+ ...+++.|+++|++.|...+....++.|+.|+ ++|+...+.... ....|..+++.++..+.. ...+||+.|.
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 877 89999999999999999999999999999998 678877777666 466677777655443322 1236999776
Q ss_pred hhhHHHHH
Q 010848 196 VSAVPAII 203 (499)
Q Consensus 196 ~~~~~~~l 203 (499)
........
T Consensus 169 ~~~~~~~~ 176 (338)
T COG0477 169 LAALLGLL 176 (338)
T ss_pred HHHHHHHH
Confidence 66554433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-07 Score=90.49 Aligned_cols=176 Identities=20% Similarity=0.209 Sum_probs=135.0
Q ss_pred HHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHH
Q 010848 35 TVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAG 114 (499)
Q Consensus 35 ~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 114 (499)
.+..+---+.||.+... +....+-..++|. ++.....+.-...+..++|++++|+|.||+|.|+++.++++++.+.
T Consensus 256 ~FLiA~~~~~DGv~til-~~~~~fg~~~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 256 LFLIARFFYIDGVNTIL-AMGGVFGAADLGL---SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA 331 (438)
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHHHHcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence 34444556777877543 3333344456654 3333344455566777899999999999999999999999999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 010848 115 AIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWML 194 (499)
Q Consensus 115 ~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f 194 (499)
++..-+......+.+.-++.|...|+..+.+-+|.++..|+++-+++.+.+....-.+..++|.+-..+.+..++-|.-+
T Consensus 332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 99888888888888889999999999999999999999999999999999999989999999988777766666677666
Q ss_pred HhhhHHHHHHHHHHHhccCC
Q 010848 195 GVSAVPAIIQFVLMLFMPES 214 (499)
Q Consensus 195 ~~~~~~~~l~~~~~~~lpes 214 (499)
....++..+.++....+|+.
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 65555555555555555553
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=95.84 Aligned_cols=155 Identities=17% Similarity=0.099 Sum_probs=104.0
Q ss_pred CcceehhchHHHHHH---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHhhHHHHHHHHHHHHHHhhC
Q 010848 290 GINTVMYYSPTIVQM---AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISG 365 (499)
Q Consensus 290 ~~~~~~~~~p~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~ 365 (499)
+++....++|.|++. .|.+..+.+...+. ......++++++|+++|| +|||+.+..+.....++..++...
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~-~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~---- 99 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGA-YSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS---- 99 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc----
Confidence 344555667777765 57777676665544 444578999999999999 899999888777666665544321
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 010848 366 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY---RGICGGMSATVNWISNLIVAQTFLTVAELVGTG 442 (499)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~ 442 (499)
.+ . +....+..+ .........+...++.++.+|++. |+++.++.+...+++..+++...+.+.+..+|+
T Consensus 100 ~~------~-~~~~~~~~l-~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~ 171 (475)
T TIGR00924 100 IY------P-DLIFYGLGT-IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYH 171 (475)
T ss_pred cc------H-hHHHHHHHH-HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 00 0 111111111 112222234555677788888753 888889999999999999988888888888898
Q ss_pred hhhHHHHHHHHHHHH
Q 010848 443 ATFLILAGIAVLAVV 457 (499)
Q Consensus 443 ~~f~~~~~~~~~~~~ 457 (499)
..|.+.++..+++.+
T Consensus 172 ~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 172 VGFNLAAVGMVIGLL 186 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887765555543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=95.33 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 010848 73 QETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP-DPYVLILGRLLVGLGVGIASVTAPVYIAE 151 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~-s~~~li~~R~l~Gig~g~~~~~~~~~i~e 151 (499)
.++..+...++.+++.+++++++||+|||+++.++..+..++.++..+.+ +...+++..++.|++.+...+...++++|
T Consensus 259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (437)
T TIGR00792 259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVAD 338 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778899999999999999999999999999988888877766653 56677788899999999999999999999
Q ss_pred cCC-------cCcccchhhHhHHHHHHHHHHHHHhhhhc
Q 010848 152 ASP-------SEVRGGLVSTNVLMITSGQFLSYLVNLAF 183 (499)
Q Consensus 152 ~~p-------~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~ 183 (499)
..| ++++|...+.......+|..+++.+.+.+
T Consensus 339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 45568888888888888888887766554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-07 Score=91.83 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH--h--cCchhHHHHHHHHHHhhhhhhhhhHHHHH
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA--A--APDPYVLILGRLLVGLGVGIASVTAPVYI 149 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~--~--a~s~~~li~~R~l~Gig~g~~~~~~~~~i 149 (499)
+...+...++..+++++.|+++||+|||+.+.+..++..+...... . .++....+..-.+.+++.+...+....++
T Consensus 282 ~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (432)
T PRK10406 282 SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILK 361 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677788889999999999999988776655433332111 1 22332222222223334444445667889
Q ss_pred hhcCCcCcccchhhHhHHHHH-HHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccC
Q 010848 150 AEASPSEVRGGLVSTNVLMIT-SGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 213 (499)
Q Consensus 150 ~e~~p~~~Rg~~~~~~~~~~~-~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpe 213 (499)
+|++|+|.|+...+....... +.....+.+...+.. .+.|...++..+...++.++..+++++
T Consensus 362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999988887554322 212234444443322 234666666666666665555554433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.7e-07 Score=93.27 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=108.0
Q ss_pred hHHhhhhhhccccccchhHHHHH-HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH---Hhc-CchhHHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIV-SMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAA-PDPYVLIL 129 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~-s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~---~~a-~s~~~li~ 129 (499)
..|++.++++. +....++.. +...++.++|.+++|+++||+|||+.+.++.++.+++.++. +.. ++...+.+
T Consensus 245 ~~~~l~~~~G~---s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~ 321 (491)
T PRK11010 245 TTTFLIRGVGF---DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA 321 (491)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34455554443 233345565 45567899999999999999999998777666555544322 333 35555555
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH
Q 010848 130 GRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209 (499)
Q Consensus 130 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~ 209 (499)
.-+++.++.|...+...++..+..|++.++...+..+....+|..+++.+.+.+.+.. ||+..|.+.++.+++.++...
T Consensus 322 ~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 322 AVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHH
Confidence 6677666667666777889999999999988888888777888776655555554433 699999988888877766666
Q ss_pred hccCC
Q 010848 210 FMPES 214 (499)
Q Consensus 210 ~lpes 214 (499)
+++++
T Consensus 401 ~~~~~ 405 (491)
T PRK11010 401 VCRQT 405 (491)
T ss_pred HHHhc
Confidence 55543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-07 Score=93.27 Aligned_cols=168 Identities=19% Similarity=0.309 Sum_probs=108.1
Q ss_pred ccCcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CChH-HHHHhhHHHHHHHHHHHHH
Q 010848 288 FTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKK-LALSSLAGVIISLVLLSWA 361 (499)
Q Consensus 288 ~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~~~~~~~~~i~~~~~~~~ 361 (499)
.........-.|.++++.|++..+.+.+..+... .+..++.|+++||+ |||| .+..+.....++...+.+.
T Consensus 12 ~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~---~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 12 GLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA---YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 3334444556789999999998888876544432 57789999999999 7775 5555555544444433321
Q ss_pred HhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Q 010848 362 FISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VG 440 (499)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~-~~ 440 (499)
.... .. +. +....+....+.....+...++..|.+|++.|+++.++......++..+++.....+.+. .+
T Consensus 89 ---~~~~----~~-~~-l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g 159 (402)
T PRK11902 89 ---PPHA----AL-WP-LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG 159 (402)
T ss_pred ---Cccc----hH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 1110 01 11 111211122333334456678889999999999999998887788887777766666664 48
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 441 TGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 441 ~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
|+..|++.+++.++.... .++.||++.
T Consensus 160 w~~~f~i~a~~~l~~~l~-~~~~~e~~~ 186 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALT-TLWAPEPEV 186 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcCCCcc
Confidence 888888888777665443 456777643
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.5e-07 Score=93.10 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=96.1
Q ss_pred cceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHhhHHHHHHHHHHHHHHhhCCCC
Q 010848 291 INTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSA 368 (499)
Q Consensus 291 ~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 368 (499)
++....+.+.|+ +..|.+..+......... ....+..+++|+++|| +|||+.+..+.....++..++.+.. ..
T Consensus 30 ~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~-~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~---~~- 104 (489)
T PRK10207 30 YYGVQGILAVFFVKQLGFSQEQAFITFGAFA-ALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL---LK- 104 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc---cc-
Confidence 344444455554 457777666554444433 3345667789999999 9999999888877777665554321 00
Q ss_pred CCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhH
Q 010848 369 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFL 446 (499)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~ 446 (499)
. .....+..+ .........+...++..|.+|++. |..+.+..+...+++..+++...+.+.+..||+..|+
T Consensus 105 ---~---~ll~~~~~l-~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~ 177 (489)
T PRK10207 105 ---P---DLIFIALGT-IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYN 177 (489)
T ss_pred ---h---hHHHHHHHH-HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 0 111111111 122222334566788899998874 4667888888888998888888888888889988888
Q ss_pred HHHHHH
Q 010848 447 ILAGIA 452 (499)
Q Consensus 447 ~~~~~~ 452 (499)
+.++..
T Consensus 178 i~~i~~ 183 (489)
T PRK10207 178 LCGAGL 183 (489)
T ss_pred HHHHHH
Confidence 754433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.9e-07 Score=86.52 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=112.6
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHH
Q 010848 299 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 378 (499)
Q Consensus 299 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (499)
+.+-++.++++.+.+.+..++... ..+..+.-|.+.||+|.|++...+...+++..+.+.+..... + +....
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~-GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~---~----~~~ll 109 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILV-GALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP---S----TWQLL 109 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHH-hHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC---c----hHHHH
Confidence 344477899999988888887765 688899999999999999998888877777766665542111 0 11122
Q ss_pred HHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CchhhHHHHHHHHHH
Q 010848 379 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG---TGATFLILAGIAVLA 455 (499)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~f~~~~~~~~~~ 455 (499)
..++ +. ..+.+.......++++-||++.+|.+.|+.. .++++..+..+..|.+....+ |+.+..++....++.
T Consensus 110 ~~gl--l~-G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 110 VIGL--LL-GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHH--HH-hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2222 22 1222333455578889999999999999999 999999888888888888888 777777888888887
Q ss_pred HHHHHHhccc
Q 010848 456 VVFVILFVPE 465 (499)
Q Consensus 456 ~~~~~~~~pe 465 (499)
.+..+++..+
T Consensus 186 ~v~~~~~~~d 195 (417)
T COG2223 186 AVLAWLGMND 195 (417)
T ss_pred HHHHHHHhCC
Confidence 7777776643
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=104.23 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 010848 72 LQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAE 151 (499)
Q Consensus 72 ~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e 151 (499)
..+++.+...+|.++|++++|+++||+++|+.+.++.++.+++.++..+.++...+++.-++.|++.+...+...+++.+
T Consensus 270 ~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 349 (1146)
T PRK08633 270 QVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQF 349 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 45778888999999999999999999999999988888888888888888888888899999999999999999999999
Q ss_pred cCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHH
Q 010848 152 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA 201 (499)
Q Consensus 152 ~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~ 201 (499)
..|+++||..++.......+|..+++.++..+.....++...|++.+...
T Consensus 350 ~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 350 RAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred cCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999999999988888888877776665544322224566666555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-07 Score=89.40 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=99.8
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CChHHH-HHhhHHHHHHHHHHHHHHhhCCCCCC
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKKLA-LSSLAGVIISLVLLSWAFISGSSASS 370 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 370 (499)
..|.+.++.|.+..+.+..... . .... ..++.|.++||+ |||+.+ ..+.....++...+.+ . .+. .
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~-~-~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~--~-~~~--~ 81 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLV-G-LPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF--L-VPS--T 81 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH-H-HHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc--C-Ccc--h
Confidence 4578888899988877766433 2 1122 378889999998 788864 3333333333333321 1 110 0
Q ss_pred CchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------Cc
Q 010848 371 SGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--------TG 442 (499)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~--------~~ 442 (499)
.... +....+..........+...++..|.+|++.|+++.+.......++..+++.+...+.+..+ |+
T Consensus 82 --~l~~--l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 82 --DLPL--LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred --hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 1111 11111111222222345556788999999999999999888888888877777766666666 88
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 443 ATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 443 ~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
..|++.++..++.....++..||++.
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~~~ 183 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEPQE 183 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 88888888777766555556677643
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=88.05 Aligned_cols=153 Identities=14% Similarity=0.068 Sum_probs=96.3
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
-..|.+.++.+.+..+.+.+.+... .+..++++..|++.||+|||+.+..+.....++..+...... .. .+
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~-~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-~~------~~- 94 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFY-GGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-IM------NY- 94 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-hc------cH-
Confidence 3557788888998877776665544 457899999999999999999988887766666544322110 00 01
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA------------------- 436 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~------------------- 436 (499)
+..+.... ..........+...++..+..|++.|++..++....+.++..+++.+...+.
T Consensus 95 ~~~l~~~~-l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~ 173 (410)
T TIGR00885 95 TLFLVGLF-ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEE 173 (410)
T ss_pred HHHHHHHH-HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHH
Confidence 11111111 1111111112333456678889999999999988888888887776655442
Q ss_pred -------HHcCCchhhHHHHHHHHHHHHH
Q 010848 437 -------ELVGTGATFLILAGIAVLAVVF 458 (499)
Q Consensus 437 -------~~~~~~~~f~~~~~~~~~~~~~ 458 (499)
+..+|+.+|.+.+++.++..+.
T Consensus 174 ~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 174 LSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235777787777766655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=88.63 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH----HHhcCchhHHHHHHHHHHhhhhhhhhhHHHH
Q 010848 73 QETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII----MAAAPDPYVLILGRLLVGLGVGIASVTAPVY 148 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~----~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~ 148 (499)
.++....+.++..++.+++|+++||+|||+++..+.++..+.... ....++...+....++.|++.|...+....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (434)
T PRK15075 276 SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVA 355 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355667778888999999999999999999887765443332211 1123444445555666777777777777789
Q ss_pred HhhcCCcCcccchhhHhH-HHHHHHHHHHHHhhhhccC
Q 010848 149 IAEASPSEVRGGLVSTNV-LMITSGQFLSYLVNLAFTE 185 (499)
Q Consensus 149 i~e~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~~ 185 (499)
+.|.+|+++|+...+... .+..++..++|.+.+.+.+
T Consensus 356 ~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 356 LTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999998887643 3333334456655555544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=90.62 Aligned_cols=154 Identities=17% Similarity=0.119 Sum_probs=93.8
Q ss_pred cceehhchHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHhhHHHHHHHHHHHHHHhhCCCC
Q 010848 291 INTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSA 368 (499)
Q Consensus 291 ~~~~~~~~p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 368 (499)
++....+.|.++ ++.|.+..+....... .........+++|++.|| +|||+.+..+.....++..++... ...
T Consensus 37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~-~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---~~~- 111 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGMSEADSITLFSS-FSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---GHD- 111 (500)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---ccc-
Confidence 344445566666 5678876655444433 222234445688999999 599999887776666554444321 100
Q ss_pred CCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhH
Q 010848 369 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFL 446 (499)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~ 446 (499)
. .....+..+. ........+...++..|.+|++. |..+.++.+...+++..+++...+.+.+..||+..|.
T Consensus 112 -----~-~~l~~~~~l~-gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~ 184 (500)
T PRK09584 112 -----A-GIVYMGMATI-AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFA 184 (500)
T ss_pred -----H-HHHHHHHHHH-HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 0 1111111111 11122233555577889998643 4456777788888999888888888888889998888
Q ss_pred HHHHHHHHHH
Q 010848 447 ILAGIAVLAV 456 (499)
Q Consensus 447 ~~~~~~~~~~ 456 (499)
+.++..+++.
T Consensus 185 i~~i~~~i~~ 194 (500)
T PRK09584 185 LSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHH
Confidence 8765444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.1e-07 Score=88.03 Aligned_cols=134 Identities=17% Similarity=0.076 Sum_probs=95.5
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY-GRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLL 133 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l 133 (499)
-+|...+|.+. +....+...+...++..++.++.|++.||+ +||+.+..+..+.+++.+...+.++..... .-++
T Consensus 219 ~lp~~~~~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 294 (355)
T TIGR00896 219 WLPAILISHGA---SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV 294 (355)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence 34554445432 333457788899999999999999999999 567777788788877777676666543332 4578
Q ss_pred HHhhhhhhhhhHHHHHhhcCC-cCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHH
Q 010848 134 VGLGVGIASVTAPVYIAEASP-SEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRW 192 (499)
Q Consensus 134 ~Gig~g~~~~~~~~~i~e~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~ 192 (499)
.|++.|...+.....+.+..+ +++++...+........|..+++.+.+.+.+..++|++
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 899999999888777776555 45667777777766677777888777666554444543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-06 Score=87.54 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=97.8
Q ss_pred hHHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh------cCchhHHHHHHHHHHhhhhhhhhh
Q 010848 72 LQETIVSMAL-VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA------APDPYVLILGRLLVGLGVGIASVT 144 (499)
Q Consensus 72 ~~~~~~s~~~-lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~------a~s~~~li~~R~l~Gig~g~~~~~ 144 (499)
..++...... .+..+|.++.|++.||+|+|+.+.++..+..+....... .++...+.....+.+++.|...+.
T Consensus 244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 323 (390)
T TIGR02718 244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVA 323 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555543 567788999999999999999988877665333322211 234445556667777888888888
Q ss_pred HHHHHhhcCCc-CcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH
Q 010848 145 APVYIAEASPS-EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 145 ~~~~i~e~~p~-~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~ 207 (499)
......+..++ +++|...+..+.....|..+++.+++.+.+.. +|+..|++.+...++..+.
T Consensus 324 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 324 IYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHH
Confidence 88888788776 78899999999889999999999887765533 5888888877666554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6e-07 Score=91.84 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=131.6
Q ss_pred hHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010848 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYG--RKKATLLADVVFTAGAIIMAAAPDPYVLILGRL 132 (499)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~G--rr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~ 132 (499)
.+|...++.+. +....+...++..+.-.+|.++.|+++|+.. ++.++.+++++.+++...+.+++++..++..-.
T Consensus 320 ~l~~~~~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~ 396 (509)
T KOG2504|consen 320 YLPSYAKSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSI 396 (509)
T ss_pred HHHHHHhhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34444444433 2333466889999999999999999999998 566788888888888899999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhcc
Q 010848 133 LVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 212 (499)
Q Consensus 133 l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lp 212 (499)
+.|++.|.........+.|..+.++-..+.++......++.++++.+.+.+.+..++|...|+..+...++....++..|
T Consensus 397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999988887777777799999999988877777766655
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.1e-07 Score=86.92 Aligned_cols=141 Identities=23% Similarity=0.231 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcc
Q 010848 313 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 392 (499)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (499)
+.+..-.+....++.+...|.++||+|||.++..+..+..+...+.+.... +..++..= +......+
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~------------F~afv~aR-~l~Gi~kg 136 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN------------FAAFVLAR-FLGGIFKG 136 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-HhhhhccC
Confidence 334444555668899999999999999999998877776665554443211 11111101 11222234
Q ss_pred ccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCchhhHHHHHHHHHH---HHHHHHhcccC
Q 010848 393 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---LVGTGATFLILAGIAVLA---VVFVILFVPET 466 (499)
Q Consensus 393 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~---~~~~~~~f~~~~~~~~~~---~~~~~~~~pet 466 (499)
.-...-++++|+++++.|+.+.+...+...+|-++++.+-.++.. ..+....++.+..+..+. ......++|||
T Consensus 137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 445566899999999999999988888877777776666555443 344333333222222222 23445688999
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-06 Score=87.00 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC
Q 010848 77 VSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP--DPYVLILGRLLVGLGVGIASVTAPVYIAEASP 154 (499)
Q Consensus 77 ~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~--s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p 154 (499)
.....++.+++.++++++.||+|+|+++.++.++..++.++..+.+ +.+.+++..++.|+|.+...+...++.+|..|
T Consensus 270 ~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~ 349 (448)
T PRK09848 270 LVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVE 349 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444677888999999999999999999999998888887776654 56667778889999999999999999999987
Q ss_pred cC-------cccchhhHhHHHHHHHHHHHHHhhhh
Q 010848 155 SE-------VRGGLVSTNVLMITSGQFLSYLVNLA 182 (499)
Q Consensus 155 ~~-------~Rg~~~~~~~~~~~~G~~l~~~~~~~ 182 (499)
.+ ++|...+.......+|..+++.+...
T Consensus 350 ~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 350 YGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred hhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 34777777777777787777665443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-06 Score=85.97 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=118.4
Q ss_pred HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHH
Q 010848 304 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 383 (499)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (499)
.+.++..+.+.+.+....+ .+++.+.+|++.||+|.|+++..+.....+..++..+...... + .++.+=
T Consensus 67 ~~~ws~~~k~~i~ss~~~G-~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~---------~-~~~~~R 135 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWG-YILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF---------Y-LLLVLR 135 (466)
T ss_pred eecCCHHHHHHHHHHHHHH-HHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc---------h-hhHHHH
Confidence 3566777778877776655 7999999999999999999998887777777766655432111 1 112222
Q ss_pred HHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHHHHHh
Q 010848 384 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
++.++......|....+.++-.|++.|++..++..+...++.++...+.+.+.+. .||...|++++.+.++..++-+++
T Consensus 136 ~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 136 FLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 2222222233466667778889999999999999999999988887777777777 899999999999998887654444
Q ss_pred ccc----CCCCCHHHHHHHhhcc
Q 010848 463 VPE----TQGLTFLEVEQMWKER 481 (499)
Q Consensus 463 ~pe----t~~~~l~~~~~~~~~~ 481 (499)
..| ++..+.+|.+...+++
T Consensus 216 ~~d~P~~h~~is~~El~~I~~~k 238 (466)
T KOG2532|consen 216 YSDSPSKHPNISEKELKYIEKGK 238 (466)
T ss_pred hcCCcccCCCCCHHHHHHHHhcc
Confidence 332 2444556666665554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.4e-07 Score=85.38 Aligned_cols=129 Identities=21% Similarity=0.193 Sum_probs=95.6
Q ss_pred HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccch
Q 010848 82 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 161 (499)
Q Consensus 82 lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~ 161 (499)
+.-..|.++.+++.||+|||+.+..+.+++++++++...+.+.....+.-+..-+...+.+-+.++|..|++|...|+..
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 45567889999999999999999999999999999887776654444444444445566677888999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhccC
Q 010848 162 VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 213 (499)
Q Consensus 162 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lpe 213 (499)
.|......-+|.++.|+++... +. +=..+..+.+...++..+...++|-
T Consensus 472 vGtcSsmaRIggI~~p~iA~~~-e~--s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIAMRA-EL--STSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhhhhhHHhhhhhhhhHHHHHh-cc--ceeehHHHHHHHHHHHHHHheeeee
Confidence 9988888889999999887322 21 1223334444455555666666663
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-06 Score=83.68 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH
Q 010848 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADV 109 (499)
Q Consensus 30 ~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~ 109 (499)
+-..+.+++..+.-+.|.+.. ......|-++-+. +.....+.+....+-..+..+++.++.||+|||+.++.+..
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai--~~Yst~i~~~aG~---~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~ 343 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAI--FFYSTSIFKTAGF---TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS 343 (485)
T ss_pred HHHHHHHHHHHHHHhcCccee--HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 334455555556666665532 2222223233222 22222445566666677888999999999999999999999
Q ss_pred HHHHHHHHHHhcC---chh------HHHHHHHHHHhhhhh-hhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHh
Q 010848 110 VFTAGAIIMAAAP---DPY------VLILGRLLVGLGVGI-ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLV 179 (499)
Q Consensus 110 l~~~~~~~~~~a~---s~~------~li~~R~l~Gig~g~-~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~ 179 (499)
+..+.+++....- +.. ..+++.++..++.+. ..|...-+.+|.+|++.|..+.+...........+-...
T Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~ 423 (485)
T KOG0569|consen 344 LMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA 423 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9888887654331 111 234455555544443 467888899999999999988877665555554443332
Q ss_pred hhhccCCCCchHHHHHhhhHHHHHHHHH-HHhccCCh
Q 010848 180 NLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESP 215 (499)
Q Consensus 180 ~~~~~~~~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp 215 (499)
-..+.+..+. +.|....++.++..+. +..+|||.
T Consensus 424 fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 424 FPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 2222222222 5666666666665555 56799984
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=92.40 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=108.3
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHH
Q 010848 300 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAV 379 (499)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (499)
-..+..+.++...+.+- ........+.++++|++.||++||+++..+.....++.+...+.. ..|..+
T Consensus 58 ~v~~~fni~~s~~Gll~-~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-----------~Fwq~~ 125 (493)
T KOG1330|consen 58 EVQTYFNISDSELGLLQ-TVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-----------HFWQVL 125 (493)
T ss_pred HHHHhcCCCchhccchh-HHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 33344567666655444 445555788999999999999999998877776666655544321 112222
Q ss_pred HHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHH
Q 010848 380 IGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVF 458 (499)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~ 458 (499)
+.=.+ .+..-.+..++..+++++.||.+.|+++.++.+.....|..++...-..+.+..+ |++.|...+++..+..+.
T Consensus 126 l~R~~-vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L 204 (493)
T KOG1330|consen 126 LCRGF-VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLL 204 (493)
T ss_pred HHHHH-hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHH
Confidence 21111 1122234457888899999999999999999888877776444333333444444 889999999999999999
Q ss_pred HHHhcccCCCCCHH
Q 010848 459 VILFVPETQGLTFL 472 (499)
Q Consensus 459 ~~~~~pet~~~~l~ 472 (499)
..++.+|+.++.-+
T Consensus 205 ~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 205 VFLFVREPERGARD 218 (493)
T ss_pred HHhhccCccccccc
Confidence 88999988765433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=99.68 Aligned_cols=132 Identities=9% Similarity=0.084 Sum_probs=104.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc--------------------CchhHHH
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA--------------------PDPYVLI 128 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a--------------------~s~~~li 128 (499)
+....+++.+.+.+|.++|.++.|+++|+.++++.+..+.++.+++.+..++. ++.+.++
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL 338 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence 34456888999999999999999999999888776666666665555544443 6777888
Q ss_pred HHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHH
Q 010848 129 LGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVP 200 (499)
Q Consensus 129 ~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~ 200 (499)
+.-++.|++.+...+...+++.+.+|+++||++++.......+|..+++++.+.+.....+.+..+++.+..
T Consensus 339 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 339 IDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999988888888888877665543233566666655543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-07 Score=93.84 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccc
Q 010848 318 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 397 (499)
Q Consensus 318 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (499)
..+.++..+|+++.|.++||+|||+++..+.....++.+..++.. .+.....+-++.+++..+.....
T Consensus 125 s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~------------~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP------------NYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred HHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHhhccchhHHh
Confidence 344455789999999999999999999888877776665444321 02233344445566666777788
Q ss_pred cccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCC
Q 010848 398 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 467 (499)
Q Consensus 398 ~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~ 467 (499)
+.+.+|.++++.|+.+..+ ....+.++.+.+.....+.. +|++.+++.....++..++ +++.||++
T Consensus 193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 8899999999999999888 77777777666666655554 6777777777777766554 56666874
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.54 E-value=7e-06 Score=80.30 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCc
Q 010848 76 IVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 155 (499)
Q Consensus 76 ~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~ 155 (499)
+.-...-.++...++...+.|..|-|++++++.+...+...+.-+.++...+-+..++-|++.+. ..+..+|+--..|+
T Consensus 46 i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~ 124 (412)
T PF01770_consen 46 IYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDK 124 (412)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCH
Confidence 44445556677788899999999999999999999988888889999999999999999999886 44677899988999
Q ss_pred CcccchhhHhHHHHHHHHHHHHHhhhhccCC-CCchHHHHHhhhHHHHHHHHHHHhccCChh
Q 010848 156 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEV-PGTWRWMLGVSAVPAIIQFVLMLFMPESPR 216 (499)
Q Consensus 156 ~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~-~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~ 216 (499)
++-.++.+..-.....|..++.++|=.+... ..+.+...++......+.+++.+++|..++
T Consensus 125 ~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 125 EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 8888888777777777777776665444331 224667777776666666777778887665
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-06 Score=87.88 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=99.7
Q ss_pred eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 293 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 293 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
....+.|.+.++.|++..+.+.+.+.... .....+++|++.||+|+|+++..+.+...++.++...... .....+
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg~~--~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~--~~i~~s- 119 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVGIA--VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQ--EVIEGS- 119 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc--ccccCc-
Confidence 33456777888889988777766554222 2345667899999999999998888777777766554311 100011
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 452 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (499)
...+.+. .+..+.......+.......+.|| +.||++.|+..+...+++.+.+.+...+.. .+++..|++.+.+.
T Consensus 120 -~~~l~l~--r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~ 194 (591)
T PTZ00207 120 -VVRLSVY--NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFA 194 (591)
T ss_pred -HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 1111111 111111111112233345577887 679999999999998888765555444433 34566778888888
Q ss_pred HHHHHHHHHhcccC
Q 010848 453 VLAVVFVILFVPET 466 (499)
Q Consensus 453 ~~~~~~~~~~~pet 466 (499)
++..+..+.++++.
T Consensus 195 ~vv~ll~~~~vr~p 208 (591)
T PTZ00207 195 LVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHhheeCC
Confidence 77777666666544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=83.67 Aligned_cols=156 Identities=10% Similarity=0.047 Sum_probs=103.0
Q ss_pred hhchHHHHHHcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 295 MYYSPTIVQMAGFQSNQ-LALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 295 ~~~~p~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
.+..|++.++.|++..+ .+.+..... .+..++.+.+|++.||+|.|+++..+.+...+..+++.+...
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~-ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---------- 114 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLP-YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---------- 114 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 34567777889999887 666665544 458999999999999999999988877777766666654311
Q ss_pred hhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhH---HHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFL---ILAG 450 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~---~~~~ 450 (499)
...+...-++.+..-.... ..+.++...+|++.|+++.+...+...+|.++++.+... ....+|...+. +..+
T Consensus 115 --l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~ 190 (511)
T TIGR00806 115 --VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLV 190 (511)
T ss_pred --HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Confidence 1111111111111111122 556788899999999999999999999999888877776 44567764432 2233
Q ss_pred HHHHHHHHHHHhcccC
Q 010848 451 IAVLAVVFVILFVPET 466 (499)
Q Consensus 451 ~~~~~~~~~~~~~pet 466 (499)
...+++ +..+++|..
T Consensus 191 s~~~a~-~~a~~LP~~ 205 (511)
T TIGR00806 191 FMTFSV-FLALFLKRP 205 (511)
T ss_pred HHHHHH-HHHHhCCCC
Confidence 333333 344677844
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-06 Score=79.25 Aligned_cols=148 Identities=13% Similarity=0.032 Sum_probs=100.9
Q ss_pred hhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchh
Q 010848 46 GYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPY 125 (499)
Q Consensus 46 g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~ 125 (499)
|.+.++.+....+..+. +..+.+....+...+.+..++.+|.++.+++.||+|+||.+.++..+..++.++....++..
T Consensus 154 g~e~~~~~w~~~yl~~~-~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~ 232 (310)
T TIGR01272 154 GAEVSAGSFLVNFLSDP-HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV 232 (310)
T ss_pred HHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 34544444333344321 11223344457788999999999999999999999999999888888888776666665543
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhh
Q 010848 126 VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 198 (499)
Q Consensus 126 ~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~ 198 (499)
.+ ..-++.|++.+..+|...+...+..|++ .+...+... ...+|..+.|.+.+.+.+.. +-+..|++..
T Consensus 233 ~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~-~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~ 301 (310)
T TIGR01272 233 AM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILC-LAIVGGAIVPLLQGSLADCL-GIQLAFALPV 301 (310)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH-HHHhcchHHHHHHHHHHHhc-cchHHHHHHH
Confidence 33 3556899999999999999999988765 344445543 44567777776555554432 4677777443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.5e-06 Score=83.58 Aligned_cols=139 Identities=9% Similarity=-0.007 Sum_probs=101.6
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhh
Q 010848 58 YIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLG 137 (499)
Q Consensus 58 ~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig 137 (499)
+.++.+|. +....++..+...+|..+|+++.+++.||+++|+++..+.. .++...+.++.++++...+.-++.|++
T Consensus 231 ~~~~~lg~---s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (393)
T PRK11195 231 WAPVALGI---TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34444543 33446888899999999999999999999999988877753 344444556677777777888899999
Q ss_pred hhhhhhhHHHHHhhcCCcCc-ccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHH
Q 010848 138 VGIASVTAPVYIAEASPSEV-RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVP 200 (499)
Q Consensus 138 ~g~~~~~~~~~i~e~~p~~~-Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~ 200 (499)
.+...+...+.+.|..|+|. +|+..+.......+|..++..+...+....-.+++.|...+..
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99888888888888876665 7989888888888888888776655543322355555544443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-06 Score=85.71 Aligned_cols=137 Identities=20% Similarity=0.250 Sum_probs=104.8
Q ss_pred hhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC
Q 010848 43 LLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP 122 (499)
Q Consensus 43 ~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~ 122 (499)
++..+.....+...++..++.-. ++ ...+....+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~--~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLG--NE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhc--Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 33334444555556665544321 11 2345677788999999999999999999999999999999999999888886
Q ss_pred --chhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcC-------cccchhhHhHHHHHHHHHHHHHhhhh
Q 010848 123 --DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE-------VRGGLVSTNVLMITSGQFLSYLVNLA 182 (499)
Q Consensus 123 --s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~-------~Rg~~~~~~~~~~~~G~~l~~~~~~~ 182 (499)
|.+.+++.-++.|++.|...+...++++|..+.+ +.|...+.+....-+|..++..+.+.
T Consensus 312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999743 23566677777766777666654443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=91.95 Aligned_cols=171 Identities=14% Similarity=0.073 Sum_probs=107.0
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhC-CCC------
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG-SSA------ 368 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~-~~~------ 368 (499)
...|.+.+..++++.+.+.+.+. ...+..++.++.+++.||.+||+.+..+.+...++.++.++..... ...
T Consensus 54 ~~l~~iek~F~lss~~~G~i~s~-~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~ 132 (633)
T TIGR00805 54 SSLTTIERRFKLSTSSSGLINGS-YEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS 132 (633)
T ss_pred hhchhhhhhhCCCCCcceeeeeh-hhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence 34566777788888777666544 3445788889999999999999998888777777766654432100 000
Q ss_pred ---------------C---------------CCc--hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHH
Q 010848 369 ---------------S---------------SSG--VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM 416 (499)
Q Consensus 369 ---------------~---------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~ 416 (499)
. ... ...+..++..-+..+.......+...+++.|.+|++.|++..++
T Consensus 133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i 212 (633)
T TIGR00805 133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI 212 (633)
T ss_pred ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence 0 000 01122222233333333444456777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc----------------------CCchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 417 SATVNWISNLIVAQTFLTVAELV----------------------GTGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 417 ~~~~~~l~~~i~~~~~~~~~~~~----------------------~~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
......++..+++.+...+.+.. +|...|++.+++.++..+. ++++|++..
T Consensus 213 ~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~lp 285 (633)
T TIGR00805 213 LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKALP 285 (633)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCccccC
Confidence 99988888877766555544321 1344566666666665543 456676543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=89.33 Aligned_cols=155 Identities=21% Similarity=0.206 Sum_probs=88.2
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhH
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 376 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 376 (499)
-++++.++.|-++.. +++ ......+..++..+.|+++|.+|||...+.+.+...++.++..-. + + ..
T Consensus 66 ~l~~I~~diG~~~~~-~w~-~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-----~-~-~~---- 132 (599)
T PF06609_consen 66 ILPYINADIGGSDNW-SWF-STAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-----Q-N-MN---- 132 (599)
T ss_pred HHHHHHHhcCCCccc-hHH-HHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-----C-c-HH----
Confidence 346666777765433 443 344555567788889999999999999887776666665544321 1 0 00
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q 010848 377 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 456 (499)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 456 (499)
..+.+..+.. . +.+........++|+.|.+.|..+.++..........+++.....+..+.+|++.|++++....+++
T Consensus 133 ~~iag~~l~G-v-gaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 133 TFIAGMVLYG-V-GAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHHHHHHHH-H-hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 0111111111 1 1222233345578999999998766554433222222233333233345689999998888777776
Q ss_pred HHHH-HhcccC
Q 010848 457 VFVI-LFVPET 466 (499)
Q Consensus 457 ~~~~-~~~pet 466 (499)
+..+ ++.|.+
T Consensus 211 vl~~~fY~PP~ 221 (599)
T PF06609_consen 211 VLIFFFYFPPP 221 (599)
T ss_pred HHHHHHhCCCc
Confidence 5543 444544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-05 Score=79.82 Aligned_cols=141 Identities=22% Similarity=0.266 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc-CchhHHHH----HHHHHHhhhhhhhhhHHHH
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA-PDPYVLIL----GRLLVGLGVGIASVTAPVY 148 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a-~s~~~li~----~R~l~Gig~g~~~~~~~~~ 148 (499)
+...+...++-++.-...+++..|+|.|+++.++.+.+.+=..+.+.. ++.+...+ ...++|+..|...+....|
T Consensus 246 g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~y 325 (400)
T PF03825_consen 246 GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRY 325 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444455566666777788999999999999999999999888887777 55444333 3456999999999999999
Q ss_pred HhhcCCcCcccchhhHhHH-HHHHHHHHHHHhhhhccCCCC-----chHHHHHhhhHHHHHHHHHH-HhccCC
Q 010848 149 IAEASPSEVRGGLVSTNVL-MITSGQFLSYLVNLAFTEVPG-----TWRWMLGVSAVPAIIQFVLM-LFMPES 214 (499)
Q Consensus 149 i~e~~p~~~Rg~~~~~~~~-~~~~G~~l~~~~~~~~~~~~~-----~Wr~~f~~~~~~~~l~~~~~-~~lpes 214 (499)
+.+.+|+|.|+...+++.. ...+|..+|..+++.+.+..+ .|...+.+.+..+++..+++ ++++|+
T Consensus 326 i~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 326 IDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999988765 456888888888887654321 25556666666555544443 344543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=81.66 Aligned_cols=130 Identities=16% Similarity=0.016 Sum_probs=77.9
Q ss_pred eehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 010848 293 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 372 (499)
Q Consensus 293 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 372 (499)
....+.|.+.+..+.++.+.+...+. ...+..++.++.|++.||+|||+.+..+.....++.++....... +
T Consensus 44 ~~~~~~p~i~~~~~~s~~~~gl~~~~-~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a-~------ 115 (438)
T PRK10133 44 LNDILLPQFQQAFTLTNFQAGLIQSA-FYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI-M------ 115 (438)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-C------
Confidence 34456788878889988777666544 445578999999999999999999988877666665443211110 0
Q ss_pred hhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 010848 373 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF 432 (499)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~ 432 (499)
.+ +..+....+ .+.......+....+..|..|++.|....+.......++..+++...
T Consensus 116 ~~-~~ll~~r~l-~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 116 NY-TLFLVGLFI-IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred CH-HHHHHHHHH-HHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 111111111 11111112233345556776676666667777777777776665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.3e-06 Score=82.58 Aligned_cols=171 Identities=15% Similarity=0.086 Sum_probs=98.2
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh----ccCChHHHHHh-hHHHHHHHHHHHHHHhhC----C
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID----HFGRKKLALSS-LAGVIISLVLLSWAFISG----S 366 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~~~-~~~~~i~~~~~~~~~~~~----~ 366 (499)
.+.+.+++..|.+....+...... .....+..++.|+++| |+|||+.++.. .....+++.++.+..... .
T Consensus 25 ~~l~~yl~~lg~~~~~~~~i~~~~-~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~ 103 (477)
T TIGR01301 25 SLLTPYVQELGIPHAWASIIWLCG-PLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD 103 (477)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence 455567888898776666554443 3456888899999999 59999987654 444444444433221100 0
Q ss_pred --CCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhh--hhHHHHHHHHHHHHHHHHHHHHHHH--HHHc-
Q 010848 367 --SASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR--GICGGMSATVNWISNLIVAQTFLTV--AELV- 439 (499)
Q Consensus 367 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~l~~~i~~~~~~~~--~~~~- 439 (499)
+........+..+.++.+....... ..+..-++.+|..|++.| +.+.+....+..+++.++...-... .+..
T Consensus 104 ~~~~~~~~~~i~~~~i~~~lld~~~n~-~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~ 182 (477)
T TIGR01301 104 NLDKKTKPRAIIVFVVGFWILDVANNM-LQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFP 182 (477)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 0000001111222222222222221 223335788999998865 4677777777777776665543322 1111
Q ss_pred ------------CCchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 440 ------------GTGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 440 ------------~~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
+.+..|++.+++.+++..+..+..||..-
T Consensus 183 ~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 183 FTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 23467888888888888888888898653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=79.43 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=121.8
Q ss_pred chhHHHHHHH-HHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH
Q 010848 27 SNMYVLGLTV-IAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATL 105 (499)
Q Consensus 27 ~~~~~~~~~~-~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~ 105 (499)
+.++.|...+ +.+..++-+.+|..-.+ +....|+..+......|...+...+.-.+.-.+..++.+|+|.|+.++
T Consensus 218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~----y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll 293 (412)
T PF01306_consen 218 KMRNFWFFVLFVIGVAAIYDVFDQQFPI----YFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL 293 (412)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH
Confidence 4455544444 33344567777754111 223334333333444677788888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhH-hHHHHHHHHHHHHHhhhhcc
Q 010848 106 LADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVST-NVLMITSGQFLSYLVNLAFT 184 (499)
Q Consensus 106 ~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~ 184 (499)
++..+..+=.+.++++++.+.+.+.+.+.|+-.+........|+++.+|+|..+..... .+....+|..+.+.+++...
T Consensus 294 lag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 294 LAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 99999999999999999999999999999999999999999999999999876544433 23444555555555444443
Q ss_pred CCCCchHHHHHhhhHHHHHHHHH-HHhccC
Q 010848 185 EVPGTWRWMLGVSAVPAIIQFVL-MLFMPE 213 (499)
Q Consensus 185 ~~~~~Wr~~f~~~~~~~~l~~~~-~~~lpe 213 (499)
+.. |.|..|++.+.+.+...++ .+.+++
T Consensus 374 d~~-G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 374 DRI-GFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhc-CcHHHHHHHHHHHHHHHHHheeeecC
Confidence 321 4677787776655554444 344543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-05 Score=78.28 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA--APDPYVLILGRLLVGLGVGIASVTAPVYIAE 151 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~--a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e 151 (499)
+.......++.+++.+++++++||+|+|+.+.++.++..+......+ .++.+.+++..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667788889999999999999999998888766654443333 3466778888899999999999999999999
Q ss_pred cCCcC-------cccchhhHhHHHHHHHHHHHHHhhhhc
Q 010848 152 ASPSE-------VRGGLVSTNVLMITSGQFLSYLVNLAF 183 (499)
Q Consensus 152 ~~p~~-------~Rg~~~~~~~~~~~~G~~l~~~~~~~~ 183 (499)
..+.+ +.|...+.......+|..+++.+++.+
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98732 123455666666677777776655443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=80.43 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 73 QETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA-----APDPYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~-----a~s~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
.++..+...++.+++.+++++++||+|||+.+.++..+..++.+.... .++.+.+++.-++.|++.+...+...+
T Consensus 268 ~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~a 347 (473)
T PRK10429 268 FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVI 347 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666888899999999999999999999888877766655432 334566777778899999999999999
Q ss_pred HHhhcCCcC-------cccchhhHhHHHHHHHHHHHHHhhhh
Q 010848 148 YIAEASPSE-------VRGGLVSTNVLMITSGQFLSYLVNLA 182 (499)
Q Consensus 148 ~i~e~~p~~-------~Rg~~~~~~~~~~~~G~~l~~~~~~~ 182 (499)
+++|..|.+ +.|...+......-+|..+++.+.+.
T Consensus 348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997732 22346666666666666666554433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.3e-05 Score=69.18 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=103.2
Q ss_pred HhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc-------CchhHHHH
Q 010848 57 LYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA-------PDPYVLIL 129 (499)
Q Consensus 57 ~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a-------~s~~~li~ 129 (499)
|.+++.+|..+ .+...+.+...+|..+| ++.|.+.||+|+|.++.++.+...+|......+ ++++.+.+
T Consensus 26 ~~Lk~~l~~sq---~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~ 101 (250)
T PF06813_consen 26 PQLKSRLGYSQ---SQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCL 101 (250)
T ss_pred HHHHHHhCCCH---HHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHH
Confidence 45566665432 22345667778888776 778999999999999999999998888765432 35677777
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH
Q 010848 130 GRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209 (499)
Q Consensus 130 ~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~ 209 (499)
..++.|.+.+...........+.+|+ +||.+.++.-....++..+=..+-..+.+. +.-+..+.....+.++.++..+
T Consensus 102 ~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~~~~ 179 (250)
T PF06813_consen 102 FLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLVAMF 179 (250)
T ss_pred HHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHhh
Confidence 77888887776666666777788875 699999887777666555433332222222 2356666666667766666665
Q ss_pred hccCC
Q 010848 210 FMPES 214 (499)
Q Consensus 210 ~lpes 214 (499)
++++-
T Consensus 180 ~vr~~ 184 (250)
T PF06813_consen 180 FVRPV 184 (250)
T ss_pred heecc
Confidence 55443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-05 Score=78.73 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcc
Q 010848 313 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 392 (499)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (499)
+.+. .....+..++.+++|+++|++|||+.+..+.+...++.++...... +..+...-++.++...+
T Consensus 92 s~~~-s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------------~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 92 GLLT-SILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------------WYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHhccchhh
Confidence 3443 3444557999999999999999999988887777777666655321 11111111112222222
Q ss_pred ccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCchhhHHHHHHHHHHHHHHHHhcccCC
Q 010848 393 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL--VGTGATFLILAGIAVLAVVFVILFVPETQ 467 (499)
Q Consensus 393 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~pet~ 467 (499)
.......+.+|..|++.|+...+.......++..++ +......+. .+|+..+.+....+++..+. .++.||+.
T Consensus 159 ~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 159 ASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 234556788999999999988877776666544433 443333333 26776666666666555554 78889874
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0072 Score=60.41 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=75.0
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHH
Q 010848 298 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 377 (499)
Q Consensus 298 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 377 (499)
...|+...|+++...+..-... ...++.|+++..++.+|+|..+.=.++.....+++.+....+....+.. .......
T Consensus 281 mt~yl~~~G~s~~~igi~R~~g-av~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-~~~s~~~ 358 (432)
T PF06963_consen 281 MTAYLKSQGYSPSVIGIFRGLG-AVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-SSISAYL 358 (432)
T ss_pred HHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHH
Confidence 3456677799888777665544 3457899999999999999988766666655555544433332222110 1111112
Q ss_pred HHHHHHHHHHHHhcccc--c-cccccccccCcchhhhhHHHHHHHHHHHHHHH
Q 010848 378 AVIGLALYIAFFAPGMG--P-VPWTLNSEVYPEQYRGICGGMSATVNWISNLI 427 (499)
Q Consensus 378 ~~~~~~~~~~~~~~~~~--~-~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i 427 (499)
.+.++.+. =.|.+ . ...-+.+|..|++.|+...|+-++.+++...+
T Consensus 359 l~~gi~~S----R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll 407 (432)
T PF06963_consen 359 LLGGIALS----RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL 407 (432)
T ss_pred HHHHHHHH----HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence 22222111 01111 1 22345679999999999999999998877654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7e-06 Score=78.41 Aligned_cols=148 Identities=20% Similarity=0.193 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHH
Q 010848 310 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFF 389 (499)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (499)
.+.+.+. ......+++.+.+.|.++||+|+|..+..++..+..+.+++++... +... +..=...+..
T Consensus 106 ~~iG~LF-askA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s----------y~~l--~vAR~LQgvg 172 (464)
T KOG3764|consen 106 TQIGLLF-ASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS----------YPML--FVARSLQGVG 172 (464)
T ss_pred cchhHHH-HHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch----------hHHH--HHHHHHhhhh
Confidence 3444443 3445568889999999999999999999988888888777765321 1111 1111112221
Q ss_pred hccccccccccccccCcchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 390 APGMGPVPWTLNSEVYPEQY-RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 390 ~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
.........++.++.||.+. |+++.|+..+.-.+|-.+++.+-+.+.+..|...+|.++++++++.....++.++.++.
T Consensus 173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 22223344567889999877 69999999998888888888888888999999999999999999999888887776655
Q ss_pred CC
Q 010848 469 LT 470 (499)
Q Consensus 469 ~~ 470 (499)
++
T Consensus 253 ~~ 254 (464)
T KOG3764|consen 253 DP 254 (464)
T ss_pred Cc
Confidence 54
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=73.30 Aligned_cols=86 Identities=16% Similarity=0.337 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 70 SFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP--DPYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 70 ~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~--s~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
.....+.......+.+++.+++.++.+|+|+|+++.++.++..++.+..-+.+ +...+++..++.++|.+...+...+
T Consensus 271 ~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wa 350 (467)
T COG2211 271 ELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWA 350 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHH
Confidence 33344566677777788899999999999999999999999999999888876 6788999999999999999999999
Q ss_pred HHhhcCCc
Q 010848 148 YIAEASPS 155 (499)
Q Consensus 148 ~i~e~~p~ 155 (499)
+++|..+-
T Consensus 351 m~~d~vDy 358 (467)
T COG2211 351 MVADTVDY 358 (467)
T ss_pred HhcchhhH
Confidence 99998754
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.4e-05 Score=79.01 Aligned_cols=147 Identities=11% Similarity=0.191 Sum_probs=110.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHh----------cCchhHHHHHHHHHHh
Q 010848 67 NQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA----------APDPYVLILGRLLVGL 136 (499)
Q Consensus 67 ~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~----------a~s~~~li~~R~l~Gi 136 (499)
+.+....|.......++.++|....+++.+|++.|+++.++.++..++...... .++....+..-+++++
T Consensus 284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~ 363 (468)
T TIGR00788 284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEV 363 (468)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHH
Confidence 344555677777788999999999999999999999999999999988755421 1444566667889999
Q ss_pred hhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCC------chHHHHH-hhhHHHHHHHHHHH
Q 010848 137 GVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG------TWRWMLG-VSAVPAIIQFVLML 209 (499)
Q Consensus 137 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~------~Wr~~f~-~~~~~~~l~~~~~~ 209 (499)
+.+........++.+.+|++++|...+..+....+|..+++.+++.+.+..+ +.+|... +..++.++.+.+..
T Consensus 364 ~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~ 443 (468)
T TIGR00788 364 LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLH 443 (468)
T ss_pred HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998889999998887766543211 1222222 23334444444555
Q ss_pred hccC
Q 010848 210 FMPE 213 (499)
Q Consensus 210 ~lpe 213 (499)
++|+
T Consensus 444 llP~ 447 (468)
T TIGR00788 444 LLPR 447 (468)
T ss_pred hCCC
Confidence 7786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0011 Score=70.20 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHhcCc--------hhHHHHHHHHHHhhhhhhhhhHHH
Q 010848 77 VSMALVGAIVGAASGGWIND-AYGRKKATLLADVVFTAGAIIMAAAPD--------PYVLILGRLLVGLGVGIASVTAPV 147 (499)
Q Consensus 77 ~s~~~lg~~ig~~~~g~l~D-r~Grr~~l~~~~~l~~~~~~~~~~a~s--------~~~li~~R~l~Gig~g~~~~~~~~ 147 (499)
...+..-.-+..+++|+++| ++||++.+.++.++..++.++.+++.. ...++++=.+..+|.|+.-++..+
T Consensus 29 ~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsa 108 (654)
T TIGR00926 29 FHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSA 108 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchh
Confidence 33333334456668899999 599999999999999999888776422 123556777788899999999999
Q ss_pred HHhhcCCcCc---ccchhhHhHHHHHHHHHHHHHhhhhccCC------CCchHHHHHhhhHHHHHHHHHHH
Q 010848 148 YIAEASPSEV---RGGLVSTNVLMITSGQFLSYLVNLAFTEV------PGTWRWMLGVSAVPAIIQFVLML 209 (499)
Q Consensus 148 ~i~e~~p~~~---Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~------~~~Wr~~f~~~~~~~~l~~~~~~ 209 (499)
...|-+++++ |..+..++....++|.+++..+...+.+. ..+|...|.+.++..++.+++..
T Consensus 109 f~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 109 FGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred hhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999887654 34455666667777877776654443211 12599999998877776655543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=67.55 Aligned_cols=139 Identities=21% Similarity=0.210 Sum_probs=84.7
Q ss_pred CcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCC
Q 010848 290 GINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS 369 (499)
Q Consensus 290 ~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 369 (499)
..+....|.|.+.+..|++..+...+......+ ..+ .++.|.+.||+|.+..+.++.....++..++........
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G-~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i--- 91 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIG-SYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI--- 91 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHH-hhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc---
Confidence 345556788999889999877766554443333 334 478899999999999988888777777766654332111
Q ss_pred CCchhhHHHHHHHHHHHHHHhc-cccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 370 SSGVYGWIAVIGLALYIAFFAP-GMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 437 (499)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~ 437 (499)
....+ |.. . +..+...... ...........+.||. .||++.|+.-+..-+++.+...+...+.+
T Consensus 92 ~~~~~-~~~-~-~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 92 PSLPV-WLM-C-LFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred Cccch-HHH-H-HHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 10111 111 1 1111111111 1112333445678985 79999999999888888777766655443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=62.39 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcC
Q 010848 77 VSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 156 (499)
Q Consensus 77 ~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~ 156 (499)
.++......+..++.+.+.+++|.|+.++++.+.+.+-.. +-+-++.+.++.+-.+.|++.+..++....++.+..+++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence 4555666777888889999999999999999999986554 346778899999999999999999999999999999999
Q ss_pred cccchhhHhHHHHHHHHHHHHHhhhh
Q 010848 157 VRGGLVSTNVLMITSGQFLSYLVNLA 182 (499)
Q Consensus 157 ~Rg~~~~~~~~~~~~G~~l~~~~~~~ 182 (499)
.|++..+........+.+.|.+....
T Consensus 122 ~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 122 TIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777777777777665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00022 Score=65.14 Aligned_cols=146 Identities=14% Similarity=0.041 Sum_probs=100.1
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH-HHHHhcCchhHHHHHHHHHHhh
Q 010848 59 IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA-IIMAAAPDPYVLILGRLLVGLG 137 (499)
Q Consensus 59 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~-~~~~~a~s~~~li~~R~l~Gig 137 (499)
.++.|+....+ .+.+.|....-.++.+++.|.+.||+||+...+.+..+.++.+ ....| +++.=..+-.+.|..
T Consensus 291 F~~rfGlS~~~---a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLs 365 (459)
T KOG4686|consen 291 FQKRFGLSAVS---AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLS 365 (459)
T ss_pred HHHhhCCChhh---ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhh
Confidence 45666654333 3456666666667888999999999999987766665555443 22222 223334566778888
Q ss_pred hhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCc--hHHHHHhh-hHHHHHHHHHHH
Q 010848 138 VGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT--WRWMLGVS-AVPAIIQFVLML 209 (499)
Q Consensus 138 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~--Wr~~f~~~-~~~~~l~~~~~~ 209 (499)
...........++...|+|+.|.+.+..+...+.|..+.+++.+.+....++ |--.|.+. ...++....+.+
T Consensus 366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 8877777788899999999999999999999999999999988888766554 33344443 334444444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00059 Score=69.81 Aligned_cols=106 Identities=10% Similarity=0.123 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD--PYVLILGRLLVGLGVGIASVTAPVYIAE 151 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s--~~~li~~R~l~Gig~g~~~~~~~~~i~e 151 (499)
+.+.+.+.++.++|.+++++++||+|+|+++..+..+..+..++..+.++ ...+++.-++.|++.+...+....+++|
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888899999999999999999877665555444444434333 2234445567788887777777888888
Q ss_pred cCCc------Ccc-cchhhHhHHHHHHHHHHHHHh
Q 010848 152 ASPS------EVR-GGLVSTNVLMITSGQFLSYLV 179 (499)
Q Consensus 152 ~~p~------~~R-g~~~~~~~~~~~~G~~l~~~~ 179 (499)
..+. ++| |...+......-+|..++..+
T Consensus 346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i 380 (460)
T PRK11462 346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL 380 (460)
T ss_pred hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 7763 222 333444444444555554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-07 Score=96.99 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccccccccc
Q 010848 321 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL 400 (499)
Q Consensus 321 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (499)
..+..+|++++|++.||+|||+.+..+.....++.++....... .. ...+...-+..++...+..+....+
T Consensus 56 ~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--~~-------~~~~~~~R~~~G~~~g~~~~~~~~~ 126 (451)
T PF00083_consen 56 FIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--NN-------FWMLLIGRFLIGFGIGGAYVVSPIY 126 (451)
T ss_pred Hhhhcccccccccccccccccccccccccccccccccccccccc--cc-------ccccccccccccccccccccccccc
Confidence 34578999999999999999999887776666665554432100 00 0111111112222333345677789
Q ss_pred ccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCchhhHHHHHHHHHHHHHHHHhcccC
Q 010848 401 NSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---LVGTGATFLILAGIAVLAVVFVILFVPET 466 (499)
Q Consensus 401 ~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~pet 466 (499)
..|..|++.|+....+......+|..++........+ ..+|+..+.+.+...++. .+..+++||+
T Consensus 127 ~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pES 194 (451)
T PF00083_consen 127 ISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 9999999999988777666655554443332222212 223665555555555443 3345788998
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=73.73 Aligned_cols=150 Identities=20% Similarity=0.208 Sum_probs=100.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHH
Q 010848 306 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY 385 (499)
Q Consensus 306 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (499)
+...++.+...++ +..+.+++.+.++.+.||++-.+.+.. +.++..++.+...... ....++.+-++
T Consensus 77 ~~~~~~l~~~~t~-F~v~Yii~~~p~~~L~~r~~ls~~l~~----~~~~w~~~~~~~~~~~--------s~~~~ialr~l 143 (495)
T KOG2533|consen 77 KLVGNQLGVLDTV-FYVGYIIGQFPSGLLGDRFPLSKGLSV----SGILWGLFGFLTAAVH--------SFPGLIALRFL 143 (495)
T ss_pred chhhhhhhhHHHH-HHHHHHHHHhhHHHHHHhCChHHHHHH----HHHHHHHHHHHHHHHh--------hhHHHHHHHHH
Confidence 3444445544444 344589999999999999995544332 2222222221111111 11223333444
Q ss_pred HHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCchhhHHHHHHHHHHHHHH
Q 010848 386 IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA------ELVGTGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 386 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~ 459 (499)
.+.+-.+.+|....+...-|.++.|+.-.|+.++.+.+++++++.+..-+. ...||++.|++-++++++..+++
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence 455555667777788899999999999999999999898888777655432 23579999999999999999999
Q ss_pred HHhcccCCC
Q 010848 460 ILFVPETQG 468 (499)
Q Consensus 460 ~~~~pet~~ 468 (499)
++++|+-..
T Consensus 224 f~~lp~~P~ 232 (495)
T KOG2533|consen 224 FFFLPDNPS 232 (495)
T ss_pred EEEecCChh
Confidence 999987655
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.4e-05 Score=55.97 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=68.8
Q ss_pred hhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCch
Q 010848 45 FGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP 124 (499)
Q Consensus 45 ~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~ 124 (499)
.|+.....++.+|.+++|.+. +....+++.++.++||++|++...++.++..+++.+..+.++..+.++.|++.+++
T Consensus 4 mGigRFayTplLP~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 455666778899999988654 33445889999999999999999999999999999999999999999999999888
Q ss_pred hHHH
Q 010848 125 YVLI 128 (499)
Q Consensus 125 ~~li 128 (499)
+.+.
T Consensus 81 ~~w~ 84 (85)
T PF06779_consen 81 WLWS 84 (85)
T ss_pred HHHh
Confidence 6653
|
Note that many members are hypothetical proteins. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=71.07 Aligned_cols=146 Identities=21% Similarity=0.128 Sum_probs=95.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHH
Q 010848 307 FQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY 385 (499)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (499)
++.++...+++..... .-+.++++||++|| +|+|+.+..+.+...++-+++.... . .... ...+++.+
T Consensus 58 ~~~~~A~~l~~~y~sl-VY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~--~--~~~~-----gl~i~L~~- 126 (498)
T COG3104 58 FDETHATGLFSAYGSL-VYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS--V--SGPG-----GLYIGLAL- 126 (498)
T ss_pred cChHhhHHHHHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc--c--cccc-----HHHHHHHH-
Confidence 7766655454444433 35678999999999 5999998888877777766665421 0 0000 11112211
Q ss_pred HHHHhccccccccccccccCcchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhc
Q 010848 386 IAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFV 463 (499)
Q Consensus 386 ~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 463 (499)
........=+....+..|++|++. |-.+.++.+...++++++.+.+.+.+.+..||+..|...++-+.++.+..++..
T Consensus 127 I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 127 IIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 111222223566678889987653 555666666677899999999999999999999899988888888877655433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0014 Score=62.37 Aligned_cols=176 Identities=18% Similarity=0.170 Sum_probs=117.7
Q ss_pred cccchhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhh-hchhH
Q 010848 24 SYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA-YGRKK 102 (499)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr-~Grr~ 102 (499)
+.++++..|.++...++-++.+.. +-.=+|.|-.|-+. ++...++..+...+..+..++....+++| -.+|+
T Consensus 203 ~vw~~~~aW~vtLfmGlqS~~~Y~----~~~WLP~ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~ 275 (395)
T COG2807 203 KVWRSPLAWQVTLFMGLQSLLYYI----VIGWLPAILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP 275 (395)
T ss_pred ccccCchhHHHHHHHHhhHHHHHH----HHHHHHHHHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 356777777777766555544322 22245665555433 34445778999999999999999999995 55677
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcc-cchhhHhHHHHHHHHHHHHHhhh
Q 010848 103 ATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVR-GGLVSTNVLMITSGQFLSYLVNL 181 (499)
Q Consensus 103 ~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~R-g~~~~~~~~~~~~G~~l~~~~~~ 181 (499)
..+...+.+.++...+.+.|.-..+.- -++.|+|.|..++...+.+.+..+.-++ ++..+..+....+=...||.+.+
T Consensus 276 ~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G 354 (395)
T COG2807 276 LVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFG 354 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHh
Confidence 777777777777777777776544443 4999999999999999999998866544 33334333332222334566555
Q ss_pred hccCCCCchHHHHHhhhHHHHHHHHH
Q 010848 182 AFTEVPGTWRWMLGVSAVPAIIQFVL 207 (499)
Q Consensus 182 ~~~~~~~~Wr~~f~~~~~~~~l~~~~ 207 (499)
.+-+..++|+...+..+...++..+.
T Consensus 355 ~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 355 FLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 66566678998888766655554444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=71.16 Aligned_cols=110 Identities=25% Similarity=0.182 Sum_probs=67.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHH
Q 010848 309 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 388 (499)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (499)
+...+....... ++.+.|.++.|++.||+|||+++...++.++++.++.... .........+.+ +.+.=.+.++
T Consensus 83 s~i~~~Vn~~A~-vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s---~~~~~~~~~m~~--L~~~R~~LGi 156 (538)
T KOG0252|consen 83 SGVLALVNAAAL-VGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLS---VGTTSPLGVMMT--LCFFRFLLGI 156 (538)
T ss_pred chHHHHHHHHHH-HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccC---CCCCCCcchhhH--HHHHHHHhhc
Confidence 344444444444 4578999999999999999999987777777776633321 111111122222 2222222333
Q ss_pred HhccccccccccccccCcchhhhhHHHHHHHHHHHH
Q 010848 389 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 424 (499)
Q Consensus 389 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~ 424 (499)
...+-.|+.-+.++|..-.+.|+.-.+...+++-.+
T Consensus 157 GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 157 GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred cccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 334456888889999988888987666655555444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0038 Score=61.36 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCc
Q 010848 76 IVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 155 (499)
Q Consensus 76 ~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~ 155 (499)
+.-+-.+-.++--+++.++.+|+.-+.=...+.++..++.++.+++++.++=+++-.+.+++.|........+.. .+++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~ 142 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK 142 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc
Confidence 444444555566667788888876444456666677788888899999999999999999999998888777654 5554
Q ss_pred CcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHH-HHHHHHHHhccCC
Q 010848 156 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA-IIQFVLMLFMPES 214 (499)
Q Consensus 156 ~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~-~l~~~~~~~lpes 214 (499)
.- ++.+..+...+.++|+..-..+....-+-|..+.+..+.. +..+..++.+|.+
T Consensus 143 ~~----l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 143 SS----LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred cc----cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 32 3444445555555555443333331112355555555433 3333444445543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0022 Score=64.88 Aligned_cols=134 Identities=20% Similarity=0.219 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccc
Q 010848 324 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSE 403 (499)
Q Consensus 324 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 403 (499)
.++.+..-|.++||+|||..+........+...++.+.. |.......+.. ..........++.++
T Consensus 75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-------------~~~~~~~~l~g--~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-------------YWFFLLLGLSG--GFSAIFSVGFAYVAD 139 (463)
T ss_pred HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-------------HHHhhhccccc--chhhhhhhhhhheee
Confidence 567778888999999999998877776666655544321 11111111110 011122344578889
Q ss_pred cCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 010848 404 VYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFL 472 (499)
Q Consensus 404 ~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~ 472 (499)
...++.|....|+....-..+..+++..-....+..+...+|.+.++..++...+..+++||+...+.+
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 999999999999999877777777777777777777888899999999999999999999999776654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00018 Score=71.61 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHh
Q 010848 71 FLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA 150 (499)
Q Consensus 71 ~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~ 150 (499)
...|........|-++.-++.+++..|+|+-+++.+++..+.+=-+.....+|.|+.+..-++||+..+..+.+..+|++
T Consensus 406 ~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s 485 (618)
T KOG3762|consen 406 TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYAS 485 (618)
T ss_pred eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHH
Confidence 33454566777888888888999999999999999999999888888899999999999999999999999999999999
Q ss_pred hcCCcCcccchhhHhHH-HHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 151 EASPSEVRGGLVSTNVL-MITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 151 e~~p~~~Rg~~~~~~~~-~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
..+||+.|..+.++.+. ...+|--+|.++|+...... +=|-.|.+.++.+++.+++.
T Consensus 486 ~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 486 HVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALF 543 (618)
T ss_pred hhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHH
Confidence 99999999877776543 33456666777776665542 24666777666555544443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0054 Score=59.42 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=92.3
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
-..|.+.+..+.+..+.+... ..+.++.+++++..+++.+|+|+|+-+..++....++..+..-... . . .+
T Consensus 34 iLip~l~~~f~ls~~~a~liq-faff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---~--~--~y- 104 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQ-FAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---S--K--SY- 104 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHH-HHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh---h--h--hH-
Confidence 356888888888877766554 4555668999999999999999999998888777777665532110 0 0 01
Q ss_pred HHHHHHHHHHHHHHhcc-ccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 010848 376 WIAVIGLALYIAFFAPG-MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE----------------- 437 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~----------------- 437 (499)
...+.++ +....+.+ .-+...++++.+.|++..+.-..+...++-+++++++.+...+..
T Consensus 105 ~~FL~~l--Fila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~ 182 (422)
T COG0738 105 GFFLVAL--FILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKG 182 (422)
T ss_pred HHHHHHH--HHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHH
Confidence 1111111 11111111 123445677778888666666677777887887777665444322
Q ss_pred --HcCCchhhHHHHHHHHHHHHH
Q 010848 438 --LVGTGATFLILAGIAVLAVVF 458 (499)
Q Consensus 438 --~~~~~~~f~~~~~~~~~~~~~ 458 (499)
...++.+|...+....+..+.
T Consensus 183 ~~~~~v~~pYl~~~~~lvll~v~ 205 (422)
T COG0738 183 ADASSVQFPYLILAGLLVLLAVL 205 (422)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Confidence 122455666666666555443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.024 Score=51.73 Aligned_cols=64 Identities=27% Similarity=0.379 Sum_probs=49.9
Q ss_pred HhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHH-HHhhcC
Q 010848 89 ASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPV-YIAEAS 153 (499)
Q Consensus 89 ~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~-~i~e~~ 153 (499)
.+.|.++|+-|||+.-+.-++-+++++ +.-.+|.+..++++|.+-|++.+..+....+ ++.|..
T Consensus 90 tivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 90 TIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 355788999999997666666665544 3467899999999999999999988877665 566655
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.17 Score=51.42 Aligned_cols=112 Identities=10% Similarity=-0.051 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHH-HHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc--C--c------------------------
Q 010848 73 QETIVSMALVGAIVG-AASGGWINDAYGRKKATLLADVVFTAGAIIMAAA--P--D------------------------ 123 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig-~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a--~--s------------------------ 123 (499)
..++-+...+.+.+. .++.+++++|++|++.+.+....+...-.+.++. | +
T Consensus 45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~ 124 (472)
T TIGR00769 45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIA 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHH
Confidence 455666666666665 8899999999999999988888887776665554 1 1
Q ss_pred ---hhHHHHHHHHHHhhhhhhhh-hHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc
Q 010848 124 ---PYVLILGRLLVGLGVGIASV-TAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 184 (499)
Q Consensus 124 ---~~~li~~R~l~Gig~g~~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~ 184 (499)
.|...+.-+..-+-...... ....+.+|.+..+|-.|..+....+.++|.++++.+...+.
T Consensus 125 ~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 125 ILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222333343344444 77889999999999889999999999999999887655543
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00083 Score=49.55 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=48.7
Q ss_pred chhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 010848 52 ISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVF 111 (499)
Q Consensus 52 i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~ 111 (499)
.+...|++.-+++..+.++...+.+.++..+...++.+++|.++||+||++..+....++
T Consensus 16 ~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 445567776666655667788899999999999999999999999999999877766554
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=55.67 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCccc
Q 010848 80 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 159 (499)
Q Consensus 80 ~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg 159 (499)
..-.++++..+.=.+.|..--|++++.-.+-........-+.++.+.+=+.-++.|...+... ..++|+-+..+++++.
T Consensus 51 wTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-AYysYIYs~Vd~~~Yq 129 (433)
T KOG3810|consen 51 WTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-AYYSYIYSKVDPEMYK 129 (433)
T ss_pred hhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-hhhheeeeecCHHHHH
Confidence 344556666677778998888998888877777777788899999999999999999877555 6889999999999999
Q ss_pred chhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHH---hhhHHHHHHHHHHHhccCChhHHh
Q 010848 160 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLG---VSAVPAIIQFVLMLFMPESPRWLF 219 (499)
Q Consensus 160 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~---~~~~~~~l~~~~~~~lpesp~~l~ 219 (499)
+..+..-.....|...|..++-.+.+. +|-.-+. +...-..+...+.+++|..+|-+.
T Consensus 130 rvt~y~RaA~L~g~~~g~vlaQlLvs~--~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~ 190 (433)
T KOG3810|consen 130 RVTGYCRAAFLVGKFVGSVLAQLLVSL--ETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLY 190 (433)
T ss_pred HHHHHhHHHHHHHhHHHhHHHHHHhhh--cccchhhhchhhHHHHHHHHHHHhhCCCCchhhh
Confidence 888887777777777777666544432 2322222 333333344455567776665443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.038 Score=54.02 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHhhhhhhhhhHHHHH
Q 010848 74 ETIVSMALVGAIVGAASGGWIND-AYGRKKATLLADVVFTAGAII---MAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~D-r~Grr~~l~~~~~l~~~~~~~---~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i 149 (499)
.-.++....|.++|-...|++.. |.++|+.-.+++....++-.+ ++...+.+.+...-++.|++.|.......+..
T Consensus 247 T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~m 326 (403)
T PF03209_consen 247 TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLM 326 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33677888888888888888777 677777777777776666544 45667889999999999999999999999999
Q ss_pred hhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC---------CCCchHHHHHhhhHHHHHHHHHH
Q 010848 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE---------VPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 150 ~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~---------~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
-|..++++.|..++.......++.-++..+++.+.+ ...++-.+|.+.++..++.+++.
T Consensus 327 M~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 327 MDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888777777666666666654321 12246777877776555544443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.13 Score=51.93 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhh---ccCCC--CchHH--HHHh
Q 010848 124 PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA---FTEVP--GTWRW--MLGV 196 (499)
Q Consensus 124 ~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~~~~--~~Wr~--~f~~ 196 (499)
+...++.-++.|++.|........+.+ .+|++.-+ ....+..++.+++.++... ..+.. ..++. -|.+
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~~~----a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~ 180 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPSTYSS----AVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGT 180 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHHHH----HHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHH
Confidence 556667778889998888877777666 55555433 3333333333333332221 11110 12332 2333
Q ss_pred hhHHHHHHHHHHHhccCChh
Q 010848 197 SAVPAIIQFVLMLFMPESPR 216 (499)
Q Consensus 197 ~~~~~~l~~~~~~~lpesp~ 216 (499)
..+..++.++....++..|.
T Consensus 181 a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 181 PCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 44444445555556676664
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.079 Score=51.03 Aligned_cols=138 Identities=21% Similarity=0.188 Sum_probs=77.4
Q ss_pred HHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhh-----hhchhHHHHHHH------
Q 010848 40 IGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWIND-----AYGRKKATLLAD------ 108 (499)
Q Consensus 40 l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~D-----r~Grr~~l~~~~------ 108 (499)
.-..++|.-.+.+. ++|.+-+.=+ .+....-+.|....-+. -=++|.++.| |+||||.-++-+
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~----vSyt~~a~fS~ay~P~s-LKllWaPiVDs~y~k~~GrrksWvvp~q~llG~ 111 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKG----VSYTSQAIFSFAYWPFS-LKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGL 111 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCC----cchhhhhhhhhhhhHHH-HHHHHHhhhHHHHHHhhccccceeeehHHHHHH
Confidence 34677888888888 8898765211 11111112232222222 2347888999 999999644322
Q ss_pred HHHHHHHHH------HHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhh
Q 010848 109 VVFTAGAII------MAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA 182 (499)
Q Consensus 109 ~l~~~~~~~------~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 182 (499)
.+...+... .+-.|+...+...-++.=+.++.--...-.+.-....+|+-|-+......+...|..++..+-.+
T Consensus 112 ~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLa 191 (510)
T KOG3574|consen 112 FMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLA 191 (510)
T ss_pred HHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeE
Confidence 222222111 11223333333344555566666555666666667778888888777777777777777654433
Q ss_pred c
Q 010848 183 F 183 (499)
Q Consensus 183 ~ 183 (499)
+
T Consensus 192 L 192 (510)
T KOG3574|consen 192 L 192 (510)
T ss_pred e
Confidence 3
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=53.90 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=36.8
Q ss_pred CcccchhhHhHHHHHHHHHHHHHhhhhccC----CCCchHHHHHhhhHHHHHHHHHHHhc
Q 010848 156 EVRGGLVSTNVLMITSGQFLSYLVNLAFTE----VPGTWRWMLGVSAVPAIIQFVLMLFM 211 (499)
Q Consensus 156 ~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~----~~~~Wr~~f~~~~~~~~l~~~~~~~l 211 (499)
|+|+.....+..++.+|.++....-....+ ...+||+++.+.+.+.++.+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888888888888887553211101 12369999998887766655554433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0062 Score=59.82 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=66.2
Q ss_pred HHHHHHhhhhhhhh----hchhHHHHHHHHHHH-HHHHHHHhcCchhH------------HHHHHHHHHh-----hhhhh
Q 010848 84 AIVGAASGGWINDA----YGRKKATLLADVVFT-AGAIIMAAAPDPYV------------LILGRLLVGL-----GVGIA 141 (499)
Q Consensus 84 ~~ig~~~~g~l~Dr----~Grr~~l~~~~~l~~-~~~~~~~~a~s~~~------------li~~R~l~Gi-----g~g~~ 141 (499)
..+-+++.|..+|| |||||.++.+..+.. ++.++.+++.+... .-+.-++.|+ +.=..
T Consensus 80 G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~ 159 (498)
T KOG0637|consen 80 GLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTL 159 (498)
T ss_pred cceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhh
Confidence 35668888999995 999987766655544 44445555544322 2233344443 34355
Q ss_pred hhhHHHHHhhcCCcCcccc-hhhHhHHHHHHHHHHHHHhhh
Q 010848 142 SVTAPVYIAEASPSEVRGG-LVSTNVLMITSGQFLSYLVNL 181 (499)
Q Consensus 142 ~~~~~~~i~e~~p~~~Rg~-~~~~~~~~~~~G~~l~~~~~~ 181 (499)
....-++++|.+-++++-+ +.+.+..+..+|+.+|+.++.
T Consensus 160 qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 160 QGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 5667889999887665555 888899999999999988774
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.02 Score=57.99 Aligned_cols=161 Identities=23% Similarity=0.222 Sum_probs=87.7
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc---C-ChHHH-HHhhHHHHHHHHHHHHHHhhCCCCCCCch
Q 010848 299 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF---G-RKKLA-LSSLAGVIISLVLLSWAFISGSSASSSGV 373 (499)
Q Consensus 299 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---g-rr~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 373 (499)
|++.+..|.++.+...+..+... -....++.|.++|-+ | ||+.+ +++.....++...+.. ......+ ..
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~l--Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~--~~~~~~s--~~ 87 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASL--PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL--LPASESS--AA 87 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhC--chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh--cccccch--hh
Confidence 45667789888776655544332 244567778999986 2 34433 3333333222222222 1111111 11
Q ss_pred hhHHHHHHHHHHHHHHhcccccccccccccc---CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHH
Q 010848 374 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEV---YPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG 450 (499)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~ 450 (499)
. ......+..+...+.- .+.-+...|. -|.+ |+...+.......++++++....+.+.+..+++..|.+.+.
T Consensus 88 ~-~~~~l~la~~g~a~~D---V~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~ 162 (433)
T PF03092_consen 88 I-AVVLLFLASFGYAFAD---VAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA 162 (433)
T ss_pred h-HHHHHHHHHHHHHHHH---HhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence 1 1111111111111111 1222333444 3555 77777777777788888877777777788888888888888
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 010848 451 IAVLAVVFVILFVPETQGLT 470 (499)
Q Consensus 451 ~~~~~~~~~~~~~pet~~~~ 470 (499)
+.++..+...++.+|.+.++
T Consensus 163 ~~~l~~~~~~~~~~e~~~~~ 182 (433)
T PF03092_consen 163 LPLLMLIVALFLLEERKVRP 182 (433)
T ss_pred HHHHHHHHHHHhhhhccccc
Confidence 88888777777777744444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0038 Score=46.05 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=43.8
Q ss_pred CcceehhchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Q 010848 290 GINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS 346 (499)
Q Consensus 290 ~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 346 (499)
+.....-|.|.++++.|+++.+.+.+..+... ..++++++.|+++||+++++....
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~-~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPL-IRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCccHHHHH
Confidence 34444557788888899999888877766554 479999999999999999887543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.1 Score=55.44 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=85.6
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHH
Q 010848 303 QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 381 (499)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (499)
...+.+......+... +....-+.++++|++.|+ +||++.+..+.+...++..++.+... .... . .......+.+
T Consensus 16 ~~lg~~~~~A~~i~~~-f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~~-~-~~~~~~~l~g 91 (654)
T TIGR00926 16 NFLGFSESTSTVLFHT-FTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSSG-H-PLHDLLDLLG 91 (654)
T ss_pred HHcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-cccc-c-chHHHHHHHH
Confidence 3456665554444433 333457788899999997 68888877766665665555543211 1000 0 0111112222
Q ss_pred HHHHHHHHhccccccccccccccCcch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCchhhHHHHHH
Q 010848 382 LALYIAFFAPGMGPVPWTLNSEVYPEQ---YRGICGGMSATVNWISNLIVAQTFLTVAELV-------GTGATFLILAGI 451 (499)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~-------~~~~~f~~~~~~ 451 (499)
+.+.. ....+.-+...+...+.++++ .|-....+.+...+++++++..+.+.+.+.. +|...|.+.++.
T Consensus 92 LaLia-~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~ 170 (654)
T TIGR00926 92 LALIA-LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAIL 170 (654)
T ss_pred HHHHH-hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHH
Confidence 32222 222223355556667777653 3556667777777888877777777665332 466677777777
Q ss_pred HHHHHHHHH
Q 010848 452 AVLAVVFVI 460 (499)
Q Consensus 452 ~~~~~~~~~ 460 (499)
+++++++..
T Consensus 171 m~ia~lvf~ 179 (654)
T TIGR00926 171 MILALIVFM 179 (654)
T ss_pred HHHHHHHHH
Confidence 776655543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.056 Score=51.99 Aligned_cols=158 Identities=22% Similarity=0.167 Sum_probs=75.0
Q ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHH--
Q 010848 301 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA-- 378 (499)
Q Consensus 301 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-- 378 (499)
+++.+|++..+.+.++...+.. ..+...+.|.+.||+|||+.-+.-.+.-.++.+. ...+. ....++.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~S-s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~------k~~~~---~~~L~~GRv 129 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFAS-SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT------KHSSN---YPVLLLGRV 129 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH------Hhccc---cHHHHHHHH
Confidence 3467899888888777666654 4555556679999999998643322221111111 11110 0111111
Q ss_pred HHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHcC--CchhhHHHHHHHHHH
Q 010848 379 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT-VNWISNLIVAQTFLTVAELVG--TGATFLILAGIAVLA 455 (499)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~-~~~l~~~i~~~~~~~~~~~~~--~~~~f~~~~~~~~~~ 455 (499)
+-++.....+...-.+-+. -....-+|++..+...+.+.. .+.+.++..+.......+..+ ...+|.....+..++
T Consensus 130 lgGiaTSLLfS~FEsW~V~-Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~ 208 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWMVH-EHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA 208 (354)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 1111111111111111000 112234566655554444332 222233333333333445444 356888888888877
Q ss_pred HHHHHHhcccCCCC
Q 010848 456 VVFVILFVPETQGL 469 (499)
Q Consensus 456 ~~~~~~~~pet~~~ 469 (499)
.+++...-+|..|.
T Consensus 209 ~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 209 AVLILKTWPENYGD 222 (354)
T ss_pred HHHHHhcccccCCC
Confidence 77766656676554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.037 Score=54.93 Aligned_cols=107 Identities=19% Similarity=0.329 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHH--hcC-ch------hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCc---ccchhhHhHHHH
Q 010848 102 KATLLADVVFTAGAIIMA--AAP-DP------YVLILGRLLVGLGVGIASVTAPVYIAEASPSEV---RGGLVSTNVLMI 169 (499)
Q Consensus 102 ~~l~~~~~l~~~~~~~~~--~a~-s~------~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~---Rg~~~~~~~~~~ 169 (499)
|++.++.+++.+|.++.. ..+ +. ..++++-.+.++|.|+.=|....+.+|-+++++ |......+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567788888888887732 222 22 578899999999999999999999999998764 344556777888
Q ss_pred HHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHH
Q 010848 170 TSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 209 (499)
Q Consensus 170 ~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~ 209 (499)
++|.+++......+-+ ..+|.+.|.+.++..++.++..+
T Consensus 82 n~G~~~~~~~~~~i~~-~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ-NYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHH-CS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhcc-ccchhhhhhHHHHHHHHHHHHHH
Confidence 8898888776554443 24699999998877666555543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.11 Score=52.53 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHH--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHhhHHHHHHHHHH-HHHHhhCCCCCCCchhhH
Q 010848 301 IVQM--AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR-KKLALSSLAGVIISLVLL-SWAFISGSSASSSGVYGW 376 (499)
Q Consensus 301 ~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 376 (499)
|++. .+-+....|..... ...+..+++++.|+...|.++ |+.++.+.+.+.++-++. ..... ..+ ..+
T Consensus 60 Yl~~lD~~A~~~ffG~viaa-~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~-~~~------~~y 131 (488)
T KOG2325|consen 60 YLQKLDPTATATFFGLVIAA-SSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV-PNG------VKY 131 (488)
T ss_pred hhhhcCCCCCcchhhHHHHH-HHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc-ccc------hHH
Confidence 3444 34444444544444 455678899999999999884 444555555555554444 32221 110 112
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHH---HHHHHH----------HcCCch
Q 010848 377 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQT---FLTVAE----------LVGTGA 443 (499)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~---~~~~~~----------~~~~~~ 443 (499)
..+++=. ....+.+.....-.|.+..--.+.|.++.+.......++.++++.. +..+.+ ..-+..
T Consensus 132 ~mL~~R~--l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTa 209 (488)
T KOG2325|consen 132 LMLVARI--LTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTA 209 (488)
T ss_pred HHHHHHH--HcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecch
Confidence 2222211 1112222223334566665555566666655544333443333332 222211 011334
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCCCCC
Q 010848 444 TFLILAGIAVLAVVFVILFVPETQGLT 470 (499)
Q Consensus 444 ~f~~~~~~~~~~~~~~~~~~pet~~~~ 470 (499)
+-++.+.+.++.+++..++++|.....
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccCc
Confidence 567778888888887777777764433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.24 Score=49.70 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=28.2
Q ss_pred HHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc
Q 010848 145 APVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 184 (499)
Q Consensus 145 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~ 184 (499)
+-...-....+|.++.+...++.+.+.|..++...-.++.
T Consensus 139 VDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 139 VDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred eehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 3344445557788888888888888888888876555443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=2.2 Score=44.67 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=99.8
Q ss_pred chhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHhc---C-----
Q 010848 52 ISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAA---P----- 122 (499)
Q Consensus 52 i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~a---~----- 122 (499)
....+.++.+.+|..... ....++.+.--.....+.+++++|. +||=+++.++.++...+..+..++ +
T Consensus 57 ~~nlv~ylt~~~~~~~~~---aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~ 133 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGG---AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF 133 (571)
T ss_pred hhHHHHHHHHHhccchHH---HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 344555667777654322 1234555555556677888999995 678889999988888875432211 1
Q ss_pred --------------c---hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC---cCc-cc--chhhHhHHHHHHHHHHHHHh
Q 010848 123 --------------D---PYVLILGRLLVGLGVGIASVTAPVYIAEASP---SEV-RG--GLVSTNVLMITSGQFLSYLV 179 (499)
Q Consensus 123 --------------s---~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p---~~~-Rg--~~~~~~~~~~~~G~~l~~~~ 179 (499)
+ ...+..+.-+..+|.|+.-+....+-+|=++ +++ +. ....++......|.+++..+
T Consensus 134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV 213 (571)
T ss_pred cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence 0 1366677777888999999999999999998 322 22 45566667777777776654
Q ss_pred hhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 180 NLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 180 ~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
-.. .+...+|.+-|.+......+.++++
T Consensus 214 ~vy-iq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 214 LVY-IQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHh-hhhcccceeeccHHHHHHHHHHHHH
Confidence 322 3233479999888776555544443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.099 Score=51.59 Aligned_cols=107 Identities=20% Similarity=0.146 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH---HHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 010848 75 TIVSMALVGAIVGAASGGWINDAYGRKKATLLADV---VFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAE 151 (499)
Q Consensus 75 ~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~---l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e 151 (499)
+....|.+|-.++.--...+ |+-|.+.+.+--. ++.+.....-+.++.+..++.-+..|+-.|..++.+...+.|
T Consensus 285 ~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~ 362 (402)
T PF02487_consen 285 WYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE 362 (402)
T ss_pred HHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34455666655554322221 3433333222222 222222334567889999999999999999999999999999
Q ss_pred cCCcCcccchhhHhHHHHHHHHHHHHHhhhhc
Q 010848 152 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAF 183 (499)
Q Consensus 152 ~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~ 183 (499)
-.|+|+|...++.....-+.|..++.+++..+
T Consensus 363 ~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 363 EVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999998887654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.018 Score=57.83 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=82.1
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHH
Q 010848 300 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAV 379 (499)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (499)
-.+++.+......+ ......-++.++.-++++++++|+|+-+++..++.+...=++.+.... + . |..+
T Consensus 396 WHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~----n-~------W~vL 463 (618)
T KOG3762|consen 396 WHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ----N-P------WMVL 463 (618)
T ss_pred HHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc----C-c------hhee
Confidence 34566664443333 222333334667778888999999999887766655554444443221 1 1 1111
Q ss_pred HHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q 010848 380 IGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW-ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF 458 (499)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 458 (499)
.+-++........+...-+|++...|++.|+++.++...... +|--+++.+-+.+.+..+...+|.+++..+++.++.
T Consensus 464 -Pieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 464 -PIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred -eHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 111111111112233344688888999999999988777643 222233333334445566667788888877777665
Q ss_pred H
Q 010848 459 V 459 (499)
Q Consensus 459 ~ 459 (499)
.
T Consensus 543 ~ 543 (618)
T KOG3762|consen 543 F 543 (618)
T ss_pred H
Confidence 3
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.18 Score=49.91 Aligned_cols=119 Identities=13% Similarity=0.011 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHH--HHHH
Q 010848 311 QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLAL--YIAF 388 (499)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 388 (499)
..+.+.+.++....+...+.+.|+.||.|-|.....+.....++..+=.... .+...... ..-+...+=.+ ...-
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss--~p~v~~~f-~~~l~~~Gq~iaa~Aq~ 155 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISS--LPFVPPLF-RRPLTHTGQSIAAAAQP 155 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc--Cccccccc-hhhhhHHhHHHHHHhhh
Confidence 3445556666666788888889999999999988777666655544332211 11000100 00111121111 1111
Q ss_pred HhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 389 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTV 435 (499)
Q Consensus 389 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~ 435 (499)
|.. .++.-...--||+++|+++..+....+.+|..++....+.+
T Consensus 156 Fim---~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 156 FIL---GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred Hhh---ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 111 11112334468999999999988888888876665554444
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.4 Score=45.64 Aligned_cols=139 Identities=16% Similarity=0.081 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH-HHHHHHHHHH-HH----HhcCch-hHHHHHHHHHHhhhhhh
Q 010848 69 SSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLL-ADVVFTAGAI-IM----AAAPDP-YVLILGRLLVGLGVGIA 141 (499)
Q Consensus 69 ~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~-~~~l~~~~~~-~~----~~a~s~-~~li~~R~l~Gig~g~~ 141 (499)
+....+.+.+.++.|+.+|+.+++++.++--|+....- ...+.+..+. +. ++.... ..++..-++.|+-.|+.
T Consensus 48 s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (521)
T PRK03612 48 SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME 127 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444778999999999999999888754333332111 1111111111 11 111111 22334456778888888
Q ss_pred hhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhh-ccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 142 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA-FTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 142 ~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
.|....+..+... ++-|...+......++|.++|.++... +.+..+.++..+.++.+-.++.++..
T Consensus 128 ~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 128 IPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8887777765433 112334444455555666666554333 23333446666665554433333333
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.37 E-value=3.2 Score=41.00 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHh---hhhc-cCCCCchHHHHHhhhH
Q 010848 124 PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLV---NLAF-TEVPGTWRWMLGVSAV 199 (499)
Q Consensus 124 ~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~---~~~~-~~~~~~Wr~~f~~~~~ 199 (499)
+...++.-.+.|.+.|..........++. |+|.-+..++ +.+++..+..++ ..+. .+...+=..-|.+..+
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm~----G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~ 191 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVMS----GQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTV 191 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHHh----cchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHH
Confidence 45556666777777777766666655554 5554332222 222222222222 1122 2222222334555555
Q ss_pred HHHHHHHHHHhccCChh
Q 010848 200 PAIIQFVLMLFMPESPR 216 (499)
Q Consensus 200 ~~~l~~~~~~~lpesp~ 216 (499)
..++.+++...+|..|-
T Consensus 192 ~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 192 ILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHhhcchH
Confidence 55555555556777764
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.5 Score=46.83 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=77.9
Q ss_pred chHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 297 YSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 297 ~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
..|++.+. .|++..+..--......=..++.-+....+.|.++.|++++...++..+...++.+.- + ..
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~----s------v~ 95 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT----S------VL 95 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC----c------HH
Confidence 34554443 5666544332221111112455556677899999999999887776666665554421 1 00
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--hhhHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG--ATFLILAGIAV 453 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~--~~f~~~~~~~~ 453 (499)
++.+ .-.++....+ .-...++|+-...|++.--++.+.+.+...+|.+++...--.+....+.+ ...++..+...
T Consensus 96 ~mq~-~q~~yg~~~a--~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~ 172 (412)
T PF01770_consen 96 AMQL-MQFFYGLATA--AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVS 172 (412)
T ss_pred HHHH-HHHHHHHHHH--HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 1111 1111111111 12233455555566666556777777777666655554443333333332 22233333333
Q ss_pred HHHHHHHHhcccCCC
Q 010848 454 LAVVFVILFVPETQG 468 (499)
Q Consensus 454 ~~~~~~~~~~pet~~ 468 (499)
++++ ..+++|..++
T Consensus 173 ~a~~-~~~fLP~~~~ 186 (412)
T PF01770_consen 173 LALL-IALFLPMPKR 186 (412)
T ss_pred HHHH-HHHHcCCCCc
Confidence 3333 3466777654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.4 Score=40.73 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccc
Q 010848 322 GTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLN 401 (499)
Q Consensus 322 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (499)
+...+++++.+.+.+++|.|..+.++..+-.+-.... ... + ...+.......++...-.+...-.+.
T Consensus 48 ~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~----~~~-~--------~~~l~~~s~l~G~~~a~lW~aqg~yl 114 (156)
T PF05978_consen 48 GSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF----FYP-N--------SYTLYPASALLGFGAALLWTAQGTYL 114 (156)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH----Hhh-h--------HHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence 3457778888899999999988776554433222221 111 0 11122222222222222334444567
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHHHHH
Q 010848 402 SEVYPEQYRGICGGMSATVNWISNLIVAQ 430 (499)
Q Consensus 402 ~e~~p~~~r~~~~g~~~~~~~l~~~i~~~ 430 (499)
.+...++.|++-.++...+...+.+++..
T Consensus 115 t~~s~~~~~~~~~~ifw~i~~~s~i~G~~ 143 (156)
T PF05978_consen 115 TSYSTEETIGRNTGIFWAIFQSSLIFGNL 143 (156)
T ss_pred HHcCCHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 77778888888888777776665554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.7 Score=42.84 Aligned_cols=125 Identities=8% Similarity=0.093 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCC-C------------Cchh---
Q 010848 311 QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS-S------------SGVY--- 374 (499)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~------------~~~~--- 374 (499)
...++-+.......++..++-+++++|++|+++.-.........+.+.........+.. . ....
T Consensus 44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i 123 (472)
T TIGR00769 44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFI 123 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHH
Confidence 34444443333333444677789999999998866544444444444433322111110 0 0000
Q ss_pred ----hHHHHHHHHHHHHHHhccc-cccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 375 ----GWIAVIGLALYIAFFAPGM-GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 436 (499)
Q Consensus 375 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~ 436 (499)
.|.. ..+.+..-.++.-. +-+.|..++|.+.++.-.+-.++....++++.++++.....+.
T Consensus 124 ~~~~~W~~-~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 124 AILRIWSF-ALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11111222222222 2377889999999999889999999999999888877665544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.84 E-value=7.3 Score=39.27 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=39.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHh
Q 010848 406 PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 406 p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
+++..++..+...-+-.+..+++|...+.+.+..++.....+.++..+++...=+++
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666777888889888888776666666666777777776654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.83 E-value=8.4 Score=38.98 Aligned_cols=127 Identities=15% Similarity=0.055 Sum_probs=81.4
Q ss_pred hhhhhccccccchhHHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc---------Cch----
Q 010848 59 IKDDFEAVNQSSFLQETIVSMALV-GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA---------PDP---- 124 (499)
Q Consensus 59 i~~~~~~~~~~~~~~~~~~s~~~l-g~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a---------~s~---- 124 (499)
+.|.+-.....+....++-+...+ +..+-.++.+++.+++.|.+++-+.+..+...-+++++. +++
T Consensus 49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~ 128 (509)
T COG3202 49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSR 128 (509)
T ss_pred hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHH
Confidence 444444333333334455555555 666777889999999999999999988888877777653 110
Q ss_pred -------------------hHHHHHHHHHHhhhhhhhh-hHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc
Q 010848 125 -------------------YVLILGRLLVGLGVGIASV-TAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 184 (499)
Q Consensus 125 -------------------~~li~~R~l~Gig~g~~~~-~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~ 184 (499)
|..-+.-...=+-...... .-.....|.+..||-.|..+.+..+.+++.+++..+.....
T Consensus 129 ~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 129 DLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred HHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111111122222 45667889999999899999999888888888877666654
Q ss_pred C
Q 010848 185 E 185 (499)
Q Consensus 185 ~ 185 (499)
.
T Consensus 209 k 209 (509)
T COG3202 209 K 209 (509)
T ss_pred h
Confidence 4
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.58 E-value=7.6 Score=39.31 Aligned_cols=98 Identities=17% Similarity=0.292 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHH----hhhhhh---hhhchhHHHHHHHHHHHHHHHHHHhc------------------CchhHHHHH
Q 010848 76 IVSMALVGAIVGAA----SGGWIN---DAYGRKKATLLADVVFTAGAIIMAAA------------------PDPYVLILG 130 (499)
Q Consensus 76 ~~s~~~lg~~ig~~----~~g~l~---Dr~Grr~~l~~~~~l~~~~~~~~~~a------------------~s~~~li~~ 130 (499)
+.+++.++..+|.. +.+.++ +|+||++.+.++..+..++.++.-.. +++..-.+.
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence 34555555554444 445555 56899999999988888888765432 135566677
Q ss_pred HHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHH
Q 010848 131 RLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQF 174 (499)
Q Consensus 131 R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~ 174 (499)
-++.|++-+........++.+.. +++|..+.++.-.-...+..
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~ 402 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASC 402 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999 55566565554444444433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.24 E-value=4.8 Score=37.45 Aligned_cols=121 Identities=24% Similarity=0.283 Sum_probs=58.6
Q ss_pred hHHHHHHcCCCC--chHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 298 SPTIVQMAGFQS--NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 298 ~p~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
.+.+....+.+. ...+...... .....++.++.|.+.||.|||+....+......+.+.... . . . ...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~--~-~-~----~~~- 94 (338)
T COG0477 25 LPLLLSTLSLSSGRLLYGLLLSAF-FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL--A-P-N----VGL- 94 (338)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHH-HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh--C-c-c----chH-
Confidence 344444444433 1334333333 3345666689999999999997666554432222111111 1 1 1 001
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcc-hhhhhHHHHHHH-HHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-QYRGICGGMSAT-VNWISNLIVA 429 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~-~~~l~~~i~~ 429 (499)
+. +...............+...++..|.+|. +.|+...+.... ...++..+++
T Consensus 95 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
T COG0477 95 AL-LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGP 149 (338)
T ss_pred HH-HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111122223345666778888887 567776666665 3444444444
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.032 Score=57.92 Aligned_cols=131 Identities=15% Similarity=0.016 Sum_probs=0.7
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhh-CCC----C---
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS-GSS----A--- 368 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~-~~~----~--- 368 (499)
..+++-+..++++.+.+.+.+ ..-++..+..++..++.+|..|-+.+..+...+.++.++.++-... +.. .
T Consensus 25 ~lttiErRF~l~S~~~G~i~s-~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~ 103 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISS-SYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNS 103 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccc
Confidence 345666778888877665543 3444566677777788888777677766666666665554332110 000 0
Q ss_pred ----------C-----------------CCchhhHHHHHHHHHHHHHHhcc---ccccccccccccCcchhhhhHHHHHH
Q 010848 369 ----------S-----------------SSGVYGWIAVIGLALYIAFFAPG---MGPVPWTLNSEVYPEQYRGICGGMSA 418 (499)
Q Consensus 369 ----------~-----------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~p~~~r~~~~g~~~ 418 (499)
. ............+.+.....+.| ..++..+|+-|..+++.-+...|+..
T Consensus 104 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~ 183 (539)
T PF03137_consen 104 NGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILY 183 (539)
T ss_dssp ------------------------------------------------SSS-----------------------------
T ss_pred ccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhh
Confidence 0 00000011111111111122222 23556788889999988888888888
Q ss_pred HHHHHHHHHH
Q 010848 419 TVNWISNLIV 428 (499)
Q Consensus 419 ~~~~l~~~i~ 428 (499)
++..+|..++
T Consensus 184 ~~~~lGPa~G 193 (539)
T PF03137_consen 184 AMSILGPALG 193 (539)
T ss_dssp ----------
T ss_pred HHhhccHHHH
Confidence 8877766543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.6 Score=32.69 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=45.1
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHH
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS 359 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~ 359 (499)
..|...++.+++..+.+++.+. ...+..+|.+...++.++.++++.+..+.....+....+.
T Consensus 14 lLP~M~~~~~ls~~~ag~lasa-Ny~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASA-NYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888988777666554 4456899999999999987777777776666555554443
|
Note that many members are hypothetical proteins. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.71 E-value=2.1 Score=45.62 Aligned_cols=172 Identities=16% Similarity=0.096 Sum_probs=95.9
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHh-hC------------
Q 010848 299 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI-SG------------ 365 (499)
Q Consensus 299 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~-~~------------ 365 (499)
.++-+..++++.+.+.+. ..+-.+..+......+...|..|-+++-.+.+.+.++.++.++--. .+
T Consensus 121 ttiErRF~i~Ss~sG~I~-s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~ 199 (735)
T KOG3626|consen 121 TTIERRFKISSSQSGLIA-SSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS 199 (735)
T ss_pred hhhhhhcCCCCCcceeEe-eecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence 344456677766654433 2233345666666678888888877777777777666655543200 00
Q ss_pred ---C--------------------CCC----CCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHH
Q 010848 366 ---S--------------------SAS----SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA 418 (499)
Q Consensus 366 ---~--------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 418 (499)
. ... ......|+.++...++.+....-..+...+|+-|-..++.-+...|+.+
T Consensus 200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~ 279 (735)
T KOG3626|consen 200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY 279 (735)
T ss_pred ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence 0 000 1111123333333333333333344666788888888888888889988
Q ss_pred HHHHHHHHHHHHHHHHHH----HH--------------cC-CchhhHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 010848 419 TVNWISNLIVAQTFLTVA----EL--------------VG-TGATFLILAGIAVLAVVFVILFVPETQGLTFL 472 (499)
Q Consensus 419 ~~~~l~~~i~~~~~~~~~----~~--------------~~-~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~ 472 (499)
++..+|.+++...-.... |. .| |...|++++.+.++..+. ++++|++..++..
T Consensus 280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p-~f~fPk~lp~~~~ 351 (735)
T KOG3626|consen 280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP-LFFFPKELPKSQK 351 (735)
T ss_pred HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH-HHhCcccCccccc
Confidence 888777765444333322 11 11 334566777777766554 4667877776654
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.1 Score=40.73 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCc
Q 010848 81 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 155 (499)
Q Consensus 81 ~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~ 155 (499)
.+.......+.+.+..++|-|+++.++...+... +..-+-+.+..++..-...|+|.+..+..-.+|+++....
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ 141 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN 141 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence 3444455556668889999999999988887643 3344667889999999999999999999988888887644
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.75 E-value=15 Score=36.35 Aligned_cols=48 Identities=13% Similarity=-0.056 Sum_probs=21.0
Q ss_pred CcceehhchHHHHHHcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010848 290 GINTVMYYSPTIVQMAGFQSNQ--LALLLSLAVAGTNAVGTIVGIYLIDH 337 (499)
Q Consensus 290 ~~~~~~~~~p~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~dr 337 (499)
..|.+..-.+++.+.....+.+ ....+.....+...+....-.++..|
T Consensus 33 pWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 33 PWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred chHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555554333321 11222233333344455555566666
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.086 Score=50.77 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=2.1
Q ss_pred cccccccccccCcchhhhhHHHHHHHHHHHH
Q 010848 394 GPVPWTLNSEVYPEQYRGICGGMSATVNWIS 424 (499)
Q Consensus 394 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~ 424 (499)
++....+..+..+++.|..++.+....-.+|
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~G 296 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFG 296 (309)
T ss_dssp -HHHH--------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4455566778888888877765555444333
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=88.25 E-value=6.5 Score=39.91 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=10.4
Q ss_pred HHHhhccCChHHHHH
Q 010848 332 IYLIDHFGRKKLALS 346 (499)
Q Consensus 332 g~l~dr~grr~~~~~ 346 (499)
.....|+|||+..++
T Consensus 61 s~y~~~~GRRKSWii 75 (544)
T PF13000_consen 61 SVYSKRIGRRKSWII 75 (544)
T ss_pred hhcccccCCcchhhh
Confidence 344558999998664
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.61 E-value=31 Score=36.33 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=76.9
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHHHHHHHHHhhCC----------CC
Q 010848 300 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGS----------SA 368 (499)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~----------~~ 368 (499)
++....+......+-. .-.+.+.....++++++++|.+ ||-+.+..+.....+++..+........ ..
T Consensus 63 ylt~~~~~~~~~aa~~-v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~ 141 (571)
T KOG1237|consen 63 YLTLELHASGGGAANN-VNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG 141 (571)
T ss_pred HHHHHhccchHHHHHH-HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence 3344555554332322 2334455678889999999975 7766666555544444443333221111 00
Q ss_pred ---CCCchhhHHHHHHHHHHH-HHHhccccccccccccccCcc----hhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 369 ---SSSGVYGWIAVIGLALYI-AFFAPGMGPVPWTLNSEVYPE----QYRG--ICGGMSATVNWISNLIVAQTFLTVAEL 438 (499)
Q Consensus 369 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~p~----~~r~--~~~g~~~~~~~l~~~i~~~~~~~~~~~ 438 (499)
..........+ ...+.. .....+.-+...++-++.|++ +.+. .-....+...+++..+......+..+.
T Consensus 142 ~~c~~~s~~q~~~~-~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~ 220 (571)
T KOG1237|consen 142 NVCESPSKLQLAVL-YGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN 220 (571)
T ss_pred CcccCcchHHHHHH-HHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 00011111111 111111 112223335555666777772 2222 222333333445554444444455577
Q ss_pred cCCchhhHHHHHHHHHHHHHH
Q 010848 439 VGTGATFLILAGIAVLAVVFV 459 (499)
Q Consensus 439 ~~~~~~f~~~~~~~~~~~~~~ 459 (499)
.+|...|.+..+...++.++.
T Consensus 221 ~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 221 VGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred ccceeeccHHHHHHHHHHHHH
Confidence 888888888777777665543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.52 E-value=8.8 Score=38.90 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHH--HHHHHHHHHHHHHHh---------cCchhHHHHHHHHHHhh
Q 010848 71 FLQETIVSMALVGAIVGAASGGWINDAYGRK--KATL--LADVVFTAGAIIMAA---------APDPYVLILGRLLVGLG 137 (499)
Q Consensus 71 ~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr--~~l~--~~~~l~~~~~~~~~~---------a~s~~~li~~R~l~Gig 137 (499)
|..-.....+.+|=.+|-.+..+.. .-++| ++.. ++-+++.-.-++|.. -++-+..++.-++.|+.
T Consensus 307 ~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 307 FYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 3445566677777777776543321 11222 3322 333344444345532 24566777889999999
Q ss_pred hhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhh
Q 010848 138 VGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNL 181 (499)
Q Consensus 138 ~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 181 (499)
.|-.......+..+..++++|..+......+...|...|..++.
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987777777777777777776654
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=85.69 E-value=46 Score=34.25 Aligned_cols=101 Identities=17% Similarity=0.081 Sum_probs=64.9
Q ss_pred HHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc---------Cchh-H---HHHHHHHHH----------------
Q 010848 85 IVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA---------PDPY-V---LILGRLLVG---------------- 135 (499)
Q Consensus 85 ~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a---------~s~~-~---li~~R~l~G---------------- 135 (499)
.+...+..++++|++|.+++-+....+...-.+.++. ++.. . -...+.+.|
T Consensus 73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~ 152 (491)
T PF03219_consen 73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM 152 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4445678999999999999988887777665555442 1110 0 001111222
Q ss_pred --hhhhhhh-hhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccC
Q 010848 136 --LGVGIAS-VTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE 185 (499)
Q Consensus 136 --ig~g~~~-~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~ 185 (499)
+-..... ..-..+..|.++.+|-.+..+....+.++|.+++..+.....+
T Consensus 153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2457889999999998888888888888888877665544433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=85.22 E-value=25 Score=36.12 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=35.7
Q ss_pred ccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010848 395 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 437 (499)
Q Consensus 395 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~ 437 (499)
-+.|..++|.++.+.-.+-.++.....+++.++++.......+
T Consensus 163 lLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 163 LLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999988899999999999998888777666555
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=82.71 E-value=6.6 Score=38.82 Aligned_cols=70 Identities=19% Similarity=0.058 Sum_probs=49.2
Q ss_pred cccccccccccccCcch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHH
Q 010848 392 GMGPVPWTLNSEVYPEQ---YRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 461 (499)
Q Consensus 392 ~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 461 (499)
+.=+...+...|.++++ .|.......+..-++|+.++....+++.+..+|...|.+.++..+++.+..+.
T Consensus 49 ~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 49 GIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp CCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 33455566777888765 34555666677778888888777777888888888888888888877665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 499 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 6e-40 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 64/411 (15%), Positives = 140/411 (34%), Gaps = 43/411 (10%)
Query: 70 SFLQETIVSMALVGAIVGAAS---------GGWINDAYGRKKATLLADVVFTAGAIIMAA 120
+L E S +G + S G ++D + ++ A + M
Sbjct: 52 PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF 111
Query: 121 APDP----YVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLS 176
P V+ + L G G+ + + RGG+VS G +
Sbjct: 112 VPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP 171
Query: 177 YLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 236
L+ L W L +PA ++ LF + M+ + L
Sbjct: 172 PLLFLLGMAWFNDWHAAL---YMPAFCAILVALFA-----FAMMRDTPQSCGLP-----P 218
Query: 237 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMY 296
I +++ E+ K + V +K + +A F ++
Sbjct: 219 IEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA----NVFVYLL-RYGILD 273
Query: 297 YSPT-IVQMAGFQSNQLALLLSL-AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIIS 354
+SPT + ++ F ++ + L AG GT++ ++ D R + + + +
Sbjct: 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGI--PGTLLCGWMSDKVFRGNRGATGVFFMTLV 331
Query: 355 LVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICG 414
+ +++ + + +I + + I F G + E+ P++ G
Sbjct: 332 TIATIVYWMNPAG------NPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAA 384
Query: 415 GMSATVNWISNLIVAQTFL-TVAELVGTGATFLILAGIAVLAVVFVILFVP 464
G + ++ + A + + G F+++ G ++LAV+ +I+ +
Sbjct: 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 58/429 (13%), Positives = 126/429 (29%), Gaps = 44/429 (10%)
Query: 44 LFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAI-VGAASGGWINDAYGRKK 102
L+ + L + F + Q ++ A + G + K
Sbjct: 37 LWAVANNLNDILLPQFQQAFTL----TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA 92
Query: 103 ATLLADVVFTAGAIIM--AAAPDPYVLILGRL-LVGLGVGIASVTAPVYIAEASPSEVRG 159
+ ++ GA + AA Y L L L ++ G+G A ++ P
Sbjct: 93 GIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH 152
Query: 160 GLVST----NVLMITSGQFL-SYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPES 214
++ N L+ + + A +++ +
Sbjct: 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQ--T 210
Query: 215 PRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRL 274
P + + +L+++ + + + + + + ++ ++ L + + R
Sbjct: 211 PYMIIV-----AIVLLVALLIMLTKFP-ALQSDNHSDAKQGSFSASLSRL--ARIRHWRW 262
Query: 275 AFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYL 334
A LA Q Y V+ + A +G G +L
Sbjct: 263 AVLA----QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWL 318
Query: 335 IDHFG-RKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 393
I F K LA +L + + L+ G + +I L L + F
Sbjct: 319 ISRFAPHKVLAAYALIAMALCLISAF-------------AGGHVGLIALTL-CSAFMSIQ 364
Query: 394 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV 453
P ++L + + + + T+ I IV V++ G T ++ +
Sbjct: 365 YPTIFSLGIKNLGQDTKYGSSFIVMTI--IGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422
Query: 454 LAVVFVILF 462
+ F
Sbjct: 423 AVIFIFARF 431
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 5/161 (3%)
Query: 55 ALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAG 114
A+ + D + +Q + L+ V G I+D GR+ L+ +F
Sbjct: 22 AIADMARDLNV--REGAVQSVM-GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA 78
Query: 115 AIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQF 174
++ VLI + G+G G+ V A + S + I
Sbjct: 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL 138
Query: 175 LSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF-MPES 214
L+ L+ + WR V M MPE+
Sbjct: 139 LAPLIGGLLDTMWN-WRACYLFLLVLCAGVTFSMARWMPET 178
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 52/376 (13%), Positives = 97/376 (25%), Gaps = 118/376 (31%)
Query: 50 GVISGA----LLYIKDDFEAVNQSSFL-------QETIVSMALVGAIVGAASGGWINDA- 97
++S ++ KD V+ + L QE +V + + + ++
Sbjct: 44 SILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQEEMVQKFVEEVL--RINYKFLMSPI 98
Query: 98 -------------YGRKKATLLADV-VFTAGAI------------IMAAAPDPYVLILGR 131
Y ++ L D VF + ++ P VLI G
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG- 157
Query: 132 LLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQ------FLSYLVNLAFTE 185
LG G + A + S + + + L L L +
Sbjct: 158 ---VLGSG-KTWVA----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 186 VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEID 245
P S + I + R L E +LVL + + A+ + +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN 263
Query: 246 H------LSAAAEEELRKKKTVRYLDVFKSKEIRL-----AFLAGAGLQAFQQFTGINT- 293
+ R K+ +L + I L ++
Sbjct: 264 LSCKILLTT-------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 294 -----VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR----KKLA 344
V+ +P LS+ + + D K +
Sbjct: 317 DLPREVLTTNP--------------RRLSI-----------IAESIRDGLATWDNWKHVN 351
Query: 345 LSSLAGVI-ISLVLLS 359
L +I SL +L
Sbjct: 352 CDKLTTIIESSLNVLE 367
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.92 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.15 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.13 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.02 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.88 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.86 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-53 Score=434.05 Aligned_cols=443 Identities=34% Similarity=0.611 Sum_probs=347.0
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhcccc-----ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 010848 25 YFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVN-----QSSFLQETIVSMALVGAIVGAASGGWINDAYG 99 (499)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~-----~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~G 99 (499)
.+++++++.+++++++|++++|||.++++.++|.++++|+..+ .++..++++++++.+|+++|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456778888889999999999999999999999998885432 23445688999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------hcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccch
Q 010848 100 RKKATLLADVVFTAGAIIMA------------------AAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 161 (499)
Q Consensus 100 rr~~l~~~~~l~~~~~~~~~------------------~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~ 161 (499)
||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+..+++++|++|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999999 478999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHhhhhccCC-------CCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHh
Q 010848 162 VSTNVLMITSGQFLSYLVNLAFTEV-------PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKI 234 (499)
Q Consensus 162 ~~~~~~~~~~G~~l~~~~~~~~~~~-------~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~ 234 (499)
.+........|.++++..+...... ...||+.+.+..++.++.++..+++||||+|+..+++.+++.+.+++.
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 9999999999999888877654321 235899999999999988888899999999999999999999988877
Q ss_pred hChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHH
Q 010848 235 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL 314 (499)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~ 314 (499)
.......++..+..+..+++ ++.......++.++. ........++++.+.+.+.+|.|.+.+..+.+.... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 315 (491)
T 4gc0_A 244 MGNTLATQAVQEIKHSLDHG---RKTGGRLLMFGVGVI----VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIA-L 315 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHTTHHHHSCCTHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHH-H
T ss_pred cCCchhHHHHHHHHHHHHhh---hhhhhHHHHhcccHH----HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccch-h
Confidence 65544333332222211111 111222223333322 223334466777788888888999888888765443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccc
Q 010848 315 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG 394 (499)
Q Consensus 315 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (499)
...........++.+++++++||+|||+.+..+.....+++..+........ ..+..+....++...+..+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------PGIVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhHHH
Confidence 4445555667889999999999999999988877777766665554332221 123334445555566777888
Q ss_pred ccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 395 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------LVGTGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 395 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~------~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
++.+.+.+|++|++.|+++.|++...+++++++.+..++.+.+ ..+....|++++++++++.++.++++|||||
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 8999999999999999999999999999999998888776532 3456678899999999999999999999999
Q ss_pred CCHHHHHHHhhccc
Q 010848 469 LTFLEVEQMWKERA 482 (499)
Q Consensus 469 ~~l~~~~~~~~~~~ 482 (499)
|++||+|++|+++.
T Consensus 469 ~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 469 KTLEELEALWEPET 482 (491)
T ss_dssp CCHHHHGGGTC---
T ss_pred CCHHHHHHHhCCCC
Confidence 99999999997654
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=296.32 Aligned_cols=400 Identities=15% Similarity=0.122 Sum_probs=280.8
Q ss_pred hHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 010848 29 MYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108 (499)
Q Consensus 29 ~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~ 108 (499)
+..+.......++.+..+++...++..+|.+.+|+ . +....+++.+++.++..++++++|+++||+|||+++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 34455666677788999999999999999998887 4 2233688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc
Q 010848 109 VVFTAGAIIMAA----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 184 (499)
Q Consensus 109 ~l~~~~~~~~~~----a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~ 184 (499)
++++++++++++ +++++.++++|+++|++.|...+...++++|++|+|+|++..+.......+|..+++.++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999998886654
Q ss_pred CCCCchHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccch
Q 010848 185 EVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRY 263 (499)
Q Consensus 185 ~~~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (499)
+..++||+.|++.+++.++..++ .+++||+|+....+++++... +.+++. ++.+++....++...
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~----~~~~~~~~~~~~~~~ 245 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------DYPDDY----NEKAEQELTAKQIFM 245 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C-----------------CCTHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------cccccc----hhhhhcccccccchH
Confidence 32223999999988877665444 567899887543222111000 000000 000000111111113
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CC
Q 010848 264 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GR 340 (499)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--gr 340 (499)
++.+++|.++...+..... .........+.|.++++ .|.+....+..... ...+..++.++.+++.||+ +|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~ 319 (451)
T 1pw4_A 246 QYVLPNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFL-YEYAGIPGTLLCGWMSDKVFRGN 319 (451)
T ss_dssp HHTSSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 5667777766544432221 12233445667777776 67776666655544 4455789999999999999 99
Q ss_pred hHHHHHhhHHHH-HHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHH
Q 010848 341 KKLALSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419 (499)
Q Consensus 341 r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 419 (499)
|+.+..+..... ++.+++. ...+ .. . +...... +...+...+..+..+.+..|.+|++.|+++.|+.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~----~~~~--~~--~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 320 RGATGVFFMTLVTIATIVYW----MNPA--GN--P-TVDMICM-IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----SCCT--TC--H-HHHHHHH-HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH----Hhcc--cC--H-HHHHHHH-HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 987765543333 2222211 1110 01 1 1111111 112222223345556788999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHh
Q 010848 420 VNWI-SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 420 ~~~l-~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
...+ +..+++.+.+.+.+..++...|++.+++.+++.+..++.
T Consensus 390 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 390 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999988898888888888888887776655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=272.46 Aligned_cols=367 Identities=14% Similarity=0.129 Sum_probs=265.6
Q ss_pred HHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH
Q 010848 33 GLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFT 112 (499)
Q Consensus 33 ~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~ 112 (499)
.....+++..+..+++...++..+|.+.++++. +....+++.+.+.+++.++++++|+++||+|||+++.++.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 334455567788899999999999999999865 34456889999999999999999999999999999999999999
Q ss_pred HHHHHH---HhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc-CCCC
Q 010848 113 AGAIIM---AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT-EVPG 188 (499)
Q Consensus 113 ~~~~~~---~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~-~~~~ 188 (499)
++++++ +++++++.+++.|+++|++.|...+...++++|++|+|+|++.++.......+|..+++.++..+. ...+
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 899999999999999999999999999999999999999999999999999999999999887776 4433
Q ss_pred c------------------------hHHHHHhhhHHHHHHHHHHHh--ccCChhHHhhcCCHHHHHHHHHHhhChhhHHH
Q 010848 189 T------------------------WRWMLGVSAVPAIIQFVLMLF--MPESPRWLFMKSDKEKAILVLSKIYDIARLED 242 (499)
Q Consensus 189 ~------------------------Wr~~f~~~~~~~~l~~~~~~~--lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 242 (499)
. ||+.|++.+...++..+..++ .||+++.. +++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~---------------- 243 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDAK---------------- 243 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCCSS----------------
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccccc----------------
Confidence 3 999998877666554444333 46665421 00000
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHH-HHHc-CCCCchHHHHHHHHH
Q 010848 243 EIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI-VQMA-GFQSNQLALLLSLAV 320 (499)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~-g~~~~~~~~~~~~~~ 320 (499)
+++...++++++++|+++...+...... ........+.|.+ +++. |.+....+..... .
T Consensus 244 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 304 (438)
T 3o7q_A 244 -------------QGSFSASLSRLARIRHWRWAVLAQFCYV-----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTG-T 304 (438)
T ss_dssp -------------TTSHHHHHHHHTTCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHH-H
T ss_pred -------------ccchhhhHHHHHhChHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhccCCcchhHHHHHHHH-H
Confidence 0001123445677777666544322211 1222334566777 7665 7776666655544 4
Q ss_pred HHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccccccccc
Q 010848 321 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL 400 (499)
Q Consensus 321 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (499)
..+..++.++++++.||++||+.+..+.....++.+++... . . . + ...... ...+......+..+++
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----~-----~-~-~-~~~~~~-~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA----G-----G-H-V-GLIALT-LCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----C-----H-H-H-HHHHHH-HHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc----C-----C-c-H-HHHHHH-HHHHHHHHHHHHHHHH
Confidence 45578999999999999999998877665555544333221 1 0 1 1 111121 2223333445677788
Q ss_pred ccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhhHHHHHHHHHH
Q 010848 401 NSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLA 455 (499)
Q Consensus 401 ~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~ 455 (499)
..|.+|++ |+.+.+... .+.+++.+++.+.+.+.+..+ +...|++.++..++.
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88999987 888888776 677888889999998888888 777777655444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=241.42 Aligned_cols=391 Identities=14% Similarity=0.093 Sum_probs=227.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHH
Q 010848 68 QSSFLQETIVSMALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAP 146 (499)
Q Consensus 68 ~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~ 146 (499)
.+....+++.+.+.++..++++++|+++|| +|||+++..+.++..++++++++++|++.+++.|+++|++.|...+...
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 130 (491)
T 4aps_A 51 ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVS 130 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHH
Confidence 344556889999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcCc--ccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhc-cCCh----hHHh
Q 010848 147 VYIAEASPSEV--RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM-PESP----RWLF 219 (499)
Q Consensus 147 ~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~l-pesp----~~l~ 219 (499)
++++|++|+++ |+...+.......+|..+++.++..+.+.. +||+.|++.++..++..+..++. |+.. +...
T Consensus 131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (491)
T 4aps_A 131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPT 209 (491)
T ss_dssp HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCS
T ss_pred HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCC
Confidence 99999999998 666777788888999999998887765533 59999999877666555444322 2211 0000
Q ss_pred hcCCHHHHHHHHHH----------------hhChhhHHHHHH---HH--H--HHHHHHHhhhcccchhhhhcchhhHHHH
Q 010848 220 MKSDKEKAILVLSK----------------IYDIARLEDEID---HL--S--AAAEEELRKKKTVRYLDVFKSKEIRLAF 276 (499)
Q Consensus 220 ~~~~~~~a~~~~~~----------------~~~~~~~~~~~~---~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (499)
.+.+.++..+..+. ..+..+.++... .. . ........+++.....+..+........
T Consensus 210 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (491)
T 4aps_A 210 DPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLF 289 (491)
T ss_dssp CCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHH
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 11122222221111 000000000000 00 0 0000000000000000000111111111
Q ss_pred HHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH-----HhhHH
Q 010848 277 LAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAG 350 (499)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~ 350 (499)
+..... . ........+.|.+.+. .+.+....+..... ......++..+.+++.||++||+... .+...
T Consensus 290 ~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 290 IAAVLF-W----AIEEQGSVVLATFAAERVDSSWFPVSWFQSL-NPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHH-H----HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTH-HHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHH-H----HHHhhccHHHHHHHHHHhccCccCHHHHhcc-chHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 111111 1 1112223345556554 44442233333333 33345777888899999999986543 34433
Q ss_pred HHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHH
Q 010848 351 VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ 430 (499)
Q Consensus 351 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~ 430 (499)
..++..++.............. . +....... ..........+..+.+..|.+|++.|+++.|+.+....+++.+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVS-P-LWLVGSWA-LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCC-T-HHHHHHHH-HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcc-H-HHHHHHHH-HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333332211111001011 1 11122222 2222223345667789999999999999999999999999988887
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 010848 431 TFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGL 469 (499)
Q Consensus 431 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~ 469 (499)
+.+.+.+ .++...|.+++++++++.+..+++.|+++++
T Consensus 441 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 441 LVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665543 4566678888888888877777777776554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-29 Score=248.05 Aligned_cols=354 Identities=16% Similarity=0.151 Sum_probs=243.6
Q ss_pred HHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 010848 37 IAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAI 116 (499)
Q Consensus 37 ~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~ 116 (499)
..+++.+..+++...+.+.+|.+.++++. +....+++.+.+.++..++++++|+++||+|||+++..+..+..++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 44567788888989999999998888764 344568899999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHh
Q 010848 117 IMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGV 196 (499)
Q Consensus 117 ~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~ 196 (499)
+.+++++++.+++.|+++|++.+...+....++.|++|+|+|++..+.......+|..+++.++..+.+. .+||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988877653 269999998
Q ss_pred hhHHHHHHHH-HHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHH
Q 010848 197 SAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLA 275 (499)
Q Consensus 197 ~~~~~~l~~~-~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (499)
.++..++..+ ..+++||+|+...++ ++...+.++.+++|+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~ 204 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPR-----------------------------------TRLLTSYKTLFGNSGFNCY 204 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCC-----------------------------------CCTTTCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCCccc-----------------------------------ccHHHHHHHHhcCcchHHH
Confidence 8877766555 345678886531100 0111234456666665554
Q ss_pred HHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHH-HHH
Q 010848 276 FLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG-VII 353 (499)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~-~~i 353 (499)
.+..... .........+.|.+.++ .|.+....+..... ...+..++.++.+++.||.+++.. .+... ...
T Consensus 205 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~ 276 (375)
T 2gfp_A 205 LLMLIGG-----LAGIAAFEACSGVLMGAVLGLSSMTVSILFIL-PIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLA 276 (375)
T ss_dssp HHHHHHH-----HHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHT
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3332211 11222233445555443 56655555554443 334567788888888888876322 22211 111
Q ss_pred HHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010848 354 SLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 433 (499)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~ 433 (499)
+..++....... ...+.......+. .+......+....+..|.+| +.|+++.|+.+..+.++..+++....
T Consensus 277 ~~~~~~~~~~~~-------~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 277 GLLMWIPDWFGV-------MNVWTLLVPAALF-FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp SSSSSHHHHHHH-------HHHHHHHHHHHHH-HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred HHHHHHHhhhcc-------ccHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111000 0011111222222 22222345677788899998 89999999999999999888877776
Q ss_pred HHHHHcCCchhhH
Q 010848 434 TVAELVGTGATFL 446 (499)
Q Consensus 434 ~~~~~~~~~~~f~ 446 (499)
.+.+..++...+.
T Consensus 348 ~l~~~~~~~~~~~ 360 (375)
T 2gfp_A 348 MLPQTGQGSLGLL 360 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhcCCcccHHHH
Confidence 6666554443333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=216.48 Aligned_cols=153 Identities=14% Similarity=0.238 Sum_probs=128.6
Q ss_pred Hhhhhhhccc---cccchhHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHH
Q 010848 57 LYIKDDFEAV---NQSSFLQETIVSMALVGAIVGAASGGWINDAY-GRKKATLLADVVFTAGAIIMAAAP-DPYVLILGR 131 (499)
Q Consensus 57 ~~i~~~~~~~---~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~~~a~-s~~~li~~R 131 (499)
+++.++++.. +.+....+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.+++++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4466666510 13445568899999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHHHhhhhhhhhhHHHHHhhcCCcCcccchhhH---hHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 132 LLVGLGVGIASVTAPVYIAEASPSEVRGGLVST---NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 132 ~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~---~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
+++|++.|...+...++++|++|+++|++..+. ......+|..+++.++..+.+. .+||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876655 7788889999999887766543 369999999887766655554
Q ss_pred Hh
Q 010848 209 LF 210 (499)
Q Consensus 209 ~~ 210 (499)
++
T Consensus 196 ~~ 197 (524)
T 2xut_A 196 WL 197 (524)
T ss_dssp HS
T ss_pred HH
Confidence 43
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-25 Score=225.66 Aligned_cols=363 Identities=12% Similarity=0.069 Sum_probs=204.5
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH---HHhcCch-hHHHHHHHHH
Q 010848 59 IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII---MAAAPDP-YVLILGRLLV 134 (499)
Q Consensus 59 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~---~~~a~s~-~~li~~R~l~ 134 (499)
++++++. +....+++.+.+.+++.++++++|+++||+||||+++++..++.+++.. +.+++.. ..++..|++.
T Consensus 34 l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T 2cfq_A 34 LHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110 (417)
T ss_dssp HHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGG
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555654 3344688999999999999999999999999999999988877653221 1222211 1234456666
Q ss_pred HhhhhhhhhhHHHHHhhcCCc--CcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhcc
Q 010848 135 GLGVGIASVTAPVYIAEASPS--EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 212 (499)
Q Consensus 135 Gig~g~~~~~~~~~i~e~~p~--~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lp 212 (499)
|++.|...+.....+.++.++ ++|+...+.......+|..+++.++..+.+ .+||+.|++.+++.++..+..++.|
T Consensus 111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp GSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHcC
Confidence 665555444444444444433 345655555544455666666666555443 2599999998876655555544444
Q ss_pred -CChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCc
Q 010848 213 -ESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGI 291 (499)
Q Consensus 213 -esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (499)
|+|+. .++.++++ ++.++++..+.++++++|+.+...+....... ..
T Consensus 189 ~~~~~~-~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 236 (417)
T 2cfq_A 189 TDAPSS-ATVANAVG--------------------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSC-----TY 236 (417)
T ss_dssp CCCSCS-SCSSSSSS--------------------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH-----HH
T ss_pred cccccc-cccccccc--------------------------cccccccHHHHHHHhcCCchhhHHHHHHHHHH-----HH
Confidence 44321 00000000 00000001123456677765543332211111 11
Q ss_pred ceehhchHHHHHHc-CC---CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCC
Q 010848 292 NTVMYYSPTIVQMA-GF---QSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 367 (499)
Q Consensus 292 ~~~~~~~p~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 367 (499)
.....+.|.+++.. +. +....+.... .......++.++.++++||+|||+.+..+.....+....+.. ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~----~~- 310 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTT-MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF----AT- 310 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT----CC-
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----hc-
Confidence 11112345555432 21 1122233322 333346778899999999999999876655444433222210 10
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchhhH
Q 010848 368 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMS-ATVNWISNLIVAQTFLTVAELVGTGATFL 446 (499)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~f~ 446 (499)
. . +.......+.. .......+..+.+.+|.+|++.|+++.+.. +..+.+++.+++...+.+.+..++...|.
T Consensus 311 ---~-~--~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~ 383 (417)
T 2cfq_A 311 ---S-A--LEVVILKTLHM-FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp ---S-H--HHHHHHTTHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHH
T ss_pred ---c-H--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHH
Confidence 1 1 11111111111 111111223467889999999999998885 67778888888888888777777777788
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCH
Q 010848 447 ILAGIAVLAVVFVILFVPETQGLTF 471 (499)
Q Consensus 447 ~~~~~~~~~~~~~~~~~pet~~~~l 471 (499)
+.+++++++.+..+++.||+++.++
T Consensus 384 ~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 384 VLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHHHHhhhcCCCchHH
Confidence 8888888887776777787765543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=115.54 Aligned_cols=143 Identities=13% Similarity=0.019 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhc
Q 010848 73 QETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEA 152 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~ 152 (499)
.++..+...++..++.++.|++.||+|||+++..+..+.+++.++.++.++.+.+++..++.|++.+...+....+++|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788889999999999999999999998888888777777888888888888899998887777788999999
Q ss_pred CCcCcccchhhH-hHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH-HhccCChh
Q 010848 153 SPSEVRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM-LFMPESPR 216 (499)
Q Consensus 153 ~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~-~~lpesp~ 216 (499)
+|++.||...+. +.....+|..+++.+++.+.+. .+++..|.+.++..++..++. ...||.++
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999987776 3556667888888777655442 258888888777776665554 34566554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=7e-10 Score=111.47 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=122.1
Q ss_pred chhhHHhhhhh-hccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHHHHHHHHHH-HHHHHHHhcC--chh
Q 010848 52 ISGALLYIKDD-FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY--GRKKATLLADVVFT-AGAIIMAAAP--DPY 125 (499)
Q Consensus 52 i~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~--Grr~~l~~~~~l~~-~~~~~~~~a~--s~~ 125 (499)
+....|...++ ++ .+....++..+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+.+ +.+
T Consensus 271 ~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 271 ILDWSPTYLKEVKH---FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHHHHBTTBSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 34444444333 43 3344457788899999999999999999999 99999888887777 5555555553 677
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHH-HHHHHHHhhhhccCCCCchHHHHHhhhHHHHHH
Q 010848 126 VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITS-GQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQ 204 (499)
Q Consensus 126 ~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~ 204 (499)
.+.+.-++.|++.+...+....++.|.+|+++||...+.......+ |..+++.+.+.+.+.. +|+..|++.++..++.
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~ 426 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILA 426 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999999999999988888 9999998877665543 5999999888777766
Q ss_pred HHHHHh
Q 010848 205 FVLMLF 210 (499)
Q Consensus 205 ~~~~~~ 210 (499)
.++.++
T Consensus 427 ~~~~~~ 432 (451)
T 1pw4_A 427 VILLIV 432 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-09 Score=107.41 Aligned_cols=134 Identities=16% Similarity=0.051 Sum_probs=105.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHH
Q 010848 70 SFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149 (499)
Q Consensus 70 ~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i 149 (499)
....++..+...++..++.++.|+++||+|||+.+.++.++..++.++..+.++...++.. ++.|++.+...+....+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 372 (438)
T 3o7q_A 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLG 372 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3345678888899999999999999999999999999999999999888888887766555 899999999999999999
Q ss_pred hhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHH
Q 010848 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 206 (499)
Q Consensus 150 ~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~ 206 (499)
.|..|++ |+...+... ...+|..+++.+.+.+.+..++++..|++.++..++.++
T Consensus 373 ~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 373 IKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred Hhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999977 776666655 445777777777666554333488888876554444333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.5e-10 Score=108.14 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=112.0
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
...|.+.++.|.+..+.+...+... ....++.++.|++.||+|||+.+..+.....++......... .
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~----------~- 88 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYL-LTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS----------L- 88 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHH-HHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH----------H-
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc----------H-
Confidence 3456677788888877776665544 457899999999999999999988777766666555543211 1
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 455 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 455 (499)
+. +....+..........+...++..|.+|++.|+++.+.......++..+++.....+.+..+|+..|.+.+.+.++.
T Consensus 89 ~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 89 TV-LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11 11111122222222345666788999999999999999999988888888777776666667777888877777776
Q ss_pred HHHHHHhcccCCCC
Q 010848 456 VVFVILFVPETQGL 469 (499)
Q Consensus 456 ~~~~~~~~pet~~~ 469 (499)
.+...++.||++++
T Consensus 168 ~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 168 TFSMARWMPETRPV 181 (375)
T ss_dssp HCCCCCSSCCCSTT
T ss_pred HHHHHHHCcccCCC
Confidence 66556677887554
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.8e-09 Score=106.14 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-----HHHHHHHHHHHHHHhc---------CchhHHHHHHHHHHhhhh
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATL-----LADVVFTAGAIIMAAA---------PDPYVLILGRLLVGLGVG 139 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~-----~~~~l~~~~~~~~~~a---------~s~~~li~~R~l~Gig~g 139 (499)
++..+...++..++.++.|++.||+|||+... .+..+.+++.++.+.. .+...+++.-++.|++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 401 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM 401 (491)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence 44567778888899999999999999987654 6666666666555543 267778888899999999
Q ss_pred hhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHh
Q 010848 140 IASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 210 (499)
Q Consensus 140 ~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~ 210 (499)
...+....++.|.+|+++||...+.......+|..+++.+...+.+. ++++.|++.+...++..++.++
T Consensus 402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887666543 3566677766666555544433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-08 Score=102.50 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc---C-chhHHHHHHHHH-HhhhhhhhhhHHHHHh
Q 010848 76 IVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA---P-DPYVLILGRLLV-GLGVGIASVTAPVYIA 150 (499)
Q Consensus 76 ~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a---~-s~~~li~~R~l~-Gig~g~~~~~~~~~i~ 150 (499)
......+...++.++.+++.||+|||+.++.+.....++.+..+.. . +....++.-++. +.......++...+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 396 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455667778899999999999999999998888877766554322 1 112222222222 2222234467788999
Q ss_pred hcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC-----CCchHHHHHhhhHHHHHHHHH-HHhccCCh
Q 010848 151 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV-----PGTWRWMLGVSAVPAIIQFVL-MLFMPESP 215 (499)
Q Consensus 151 e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~-----~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp 215 (499)
|.+|.+.|+...+.......+|..+++.....+... ..++.+.|++.+..+++..++ ++++||+.
T Consensus 397 E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 397 EIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 999999999998887776666666655432222110 013455677777666665554 46789984
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=104.79 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=103.1
Q ss_pred hchHHHH-HHcC------CCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHHHHHHHHHhhCCC
Q 010848 296 YYSPTIV-QMAG------FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSS 367 (499)
Q Consensus 296 ~~~p~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 367 (499)
.+.|.++ ++.| .+..+.+...+... .+..++.+++|+++||+ |||+.+..+.....++.++.... ..
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~~- 107 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFV-IGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---EH- 107 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHH-HHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---SS-
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---cc-
Confidence 3445554 4567 78777776665544 45788999999999999 99999877766665555444321 10
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCchh
Q 010848 368 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM---SATVNWISNLIVAQTFLTVAELVGTGAT 444 (499)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 444 (499)
. . +..... .+..........+...++..|.+|++.|+++.+. ......++..+++.+...+.+..+|+..
T Consensus 108 ---~--~-~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 108 ---S--V-QGFYTG-LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp ---C--H-HHHHHH-HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred ---c--H-HHHHHH-HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 0 1 111111 1222223333456667889999999999876666 7777778888888777777777788888
Q ss_pred hHHHHHHHHHHHHHHHHhccc
Q 010848 445 FLILAGIAVLAVVFVILFVPE 465 (499)
Q Consensus 445 f~~~~~~~~~~~~~~~~~~pe 465 (499)
|++.+++.++..+..++..|+
T Consensus 181 f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 181 FGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp HHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 888777766665544333343
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 499 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-20 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 6e-09 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.001 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 90.9 bits (224), Expect = 3e-20
Identities = 56/442 (12%), Positives = 134/442 (30%), Gaps = 34/442 (7%)
Query: 30 YVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAA 89
+ + G + + A+ Y+ + + F +S +
Sbjct: 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGF----ALSGISIAYGFSKF 77
Query: 90 SGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP----YVLILGRLLVGLGVGIASVTA 145
G ++D + ++ A + M P V+ + L G G+
Sbjct: 78 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137
Query: 146 PVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF 205
+ + RGG+VS G + L+ L W L + A AI+
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197
Query: 206 VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLD 265
+ M + I +++ E+ K +
Sbjct: 198 LFAFAMMRDTPQ-------------SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY 244
Query: 266 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNA 325
V +K + +A + ++ +SPT ++ + +
Sbjct: 245 VLPNKLLWYIAIA-----NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299
Query: 326 VGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY 385
GT++ ++ D R + + + + + +++ + + +
Sbjct: 300 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG-------NPTVDMICMIV 352
Query: 386 IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT-VAELVGTGAT 444
I F G + E+ P++ G G + ++ + A + + G
Sbjct: 353 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 412
Query: 445 FLILAGIAVLAVVFVILFVPET 466
F+++ G ++LAV+ +I+ +
Sbjct: 413 FMVMIGGSILAVILLIVVMIGE 434
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 55.5 bits (132), Expect = 6e-09
Identities = 39/452 (8%), Positives = 111/452 (24%), Gaps = 43/452 (9%)
Query: 23 MSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALV 82
M Y N + + G +++ D + S I + +
Sbjct: 1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFP---IWLHDIN---HISKSDTGIIFAAISL 54
Query: 83 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIAS 142
+++ G ++D G +K L +L L+ + GI
Sbjct: 55 FSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114
Query: 143 VTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAI 202
A A + + +
Sbjct: 115 GFCFNAGAPAVEA-----------------------FIEKVSRRSNFEFGRARMFGCVGW 151
Query: 203 IQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR 262
++ + + F+ L+L+ + A+ + A A +++
Sbjct: 152 ALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK 211
Query: 263 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAG 322
+ + + + + + ++
Sbjct: 212 LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELL 271
Query: 323 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGL 382
++ + + G+ L L+ + + + V+ L
Sbjct: 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS-------------ALEVVIL 318
Query: 383 ALYIAFFAPGMGPVPWTLNSEVYPEQYRG-ICGGMSATVNWISNLIVAQTFLTVAELVGT 441
F P + + + + ++ I ++ + ++ + E +G
Sbjct: 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378
Query: 442 GATFLILAGIAVLAVVFVILFVPETQGLTFLE 473
+L+L +A+ + + + L+ L
Sbjct: 379 QGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.001
Identities = 25/204 (12%), Positives = 53/204 (25%), Gaps = 2/204 (0%)
Query: 19 PDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVS 78
L ++ + + F Q + + + +
Sbjct: 207 AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTT 266
Query: 79 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 138
M + I + G K A LLA + + I + A +++ + L V
Sbjct: 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV 326
Query: 139 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITS-GQFLSYLVNLAFTEVPGTWRWMLGVS 197
V YI + ++ E G ++ V
Sbjct: 327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVL 385
Query: 198 AVPAIIQFVLMLFMPESPRWLFMK 221
+ A+ ++ +F P L +
Sbjct: 386 GLVALGFTLISVFTLSGPGPLSLL 409
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.22 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.18 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-35 Score=294.90 Aligned_cols=423 Identities=14% Similarity=0.101 Sum_probs=276.6
Q ss_pred CCCccccCcCccccccchhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHh
Q 010848 11 SSGYLDLFPDRRMSYFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAAS 90 (499)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~ 90 (499)
++.+.++.|+++..+..++..|.+...+.++.+...+|...++...|++++ ++ .+....+++.+++.+++.+++++
T Consensus 3 pap~~~~~p~~~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g---~s~~~~g~~~s~~~~~~~~~~~~ 78 (447)
T d1pw4a_ 3 PAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG---FSRGDLGFALSGISIAYGFSKFI 78 (447)
T ss_dssp CCCCCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST---TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCChhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC---cCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554333334445666666677888888898888888898764 44 34445689999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHhc----CchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhH
Q 010848 91 GGWINDAYGRKKATLLADVVFTAGAIIMAAA----PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNV 166 (499)
Q Consensus 91 ~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a----~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~ 166 (499)
+|+++||+|||+++.++.++.++++++++++ +++..+++.|+++|++.|...+....+++|++|+++|++.++...
T Consensus 79 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 158 (447)
T d1pw4a_ 79 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 158 (447)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999998876 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHH
Q 010848 167 LMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEID 245 (499)
Q Consensus 167 ~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 245 (499)
....+|..+++.++........+||+.|++.+.+.++..++ ..+++|+|+......++++.. +..++
T Consensus 159 ~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-- 226 (447)
T d1pw4a_ 159 CAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------DYPDD-- 226 (447)
T ss_dssp HHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C------
T ss_pred cccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh----------hcccc--
Confidence 99999998888776655444457999999988777665555 455677765433222111100 00000
Q ss_pred HHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHH
Q 010848 246 HLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTN 324 (499)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~ 324 (499)
. .+..++....+....++.++++..+......... ....+....+.|.++++ .+.+....+... .......
T Consensus 227 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 298 (447)
T d1pw4a_ 227 -Y-NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSSWAY-FLYEYAG 298 (447)
T ss_dssp -----------CCTHHHHHHTSSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHBTTBSCCCHHHHHHHH-HHHHHHH
T ss_pred -h-hhccccccchhhHHHHHHHcCchHHHHHHHhhhh-----hhhhhcchhhhhhhcccccccccchhhhhh-hcchhhh
Confidence 0 0000111111122334556666655443332211 11223334456666654 456655555444 4444557
Q ss_pred HHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccccccccccccc
Q 010848 325 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEV 404 (499)
Q Consensus 325 ~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 404 (499)
.++.++++++.||++||...........+....... ..... ... .+...... +...+...+..+..+.+..|.
T Consensus 299 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~---~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 371 (447)
T d1pw4a_ 299 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV-YWMNP--AGN---PTVDMICM-IVIGFLIYGPVMLIGLHALEL 371 (447)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH-TTSCC--TTC---HHHHHHHH-HHHHHHHTHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhccccccccccchhHHHHHHHHHH-HHhcc--ccc---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999876543333222222222111 11111 111 11111211 122233334455667788999
Q ss_pred CcchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcc
Q 010848 405 YPEQYRGICGGMSATVNWISN-LIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVP 464 (499)
Q Consensus 405 ~p~~~r~~~~g~~~~~~~l~~-~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~p 464 (499)
+|++.|+++.|+.+..+++++ .+.+...+.+.+..|+...|+++++.++++.++.+++.+
T Consensus 372 ~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 372 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888755 445667778888889888888888877777666555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.1e-24 Score=210.72 Aligned_cols=393 Identities=11% Similarity=0.030 Sum_probs=228.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhchhcchhhHHh-hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH
Q 010848 27 SNMYVLGLTVIAGIGGLLFGYDTGVISGALLY-IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATL 105 (499)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~ 105 (499)
+|+..+.... ..|...+..+.+.+.+|. ++++++. +....+++.+++.++..++++++|+++||+||||+++
T Consensus 5 kn~~~~~l~~----~~f~~~~~~~~~~~~l~~~l~~~~g~---s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~ 77 (417)
T d1pv7a_ 5 KNTNFWMFGL----FFFFYFFIMGAYFPFFPIWLHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp HSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred cCchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 4455554443 334444555555666664 5566653 4556789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCchhHH----HHHHHHHHhhhhhhhhhHHHHHhhcCCcC--cccchhhHhHHHHHHHHHHHHHh
Q 010848 106 LADVVFTAGAIIMAAAPDPYVL----ILGRLLVGLGVGIASVTAPVYIAEASPSE--VRGGLVSTNVLMITSGQFLSYLV 179 (499)
Q Consensus 106 ~~~~l~~~~~~~~~~a~s~~~l----i~~R~l~Gig~g~~~~~~~~~i~e~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~ 179 (499)
++..+..++..+..+.++.... ++.+.+.|.+.+...........+..+++ ++....+........+..+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (417)
T d1pv7a_ 78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccc
Confidence 9999999999888887766554 34555555555555555444444444332 33445555566666677777776
Q ss_pred hhhccCCCCchHHHHHhhhHHHH-HHHHHHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhh
Q 010848 180 NLAFTEVPGTWRWMLGVSAVPAI-IQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 258 (499)
Q Consensus 180 ~~~~~~~~~~Wr~~f~~~~~~~~-l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (499)
+..+... +|++.++....... +..+..+..+|+|+....+ +++. ++.+++
T Consensus 158 ~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------------~~~~~~ 208 (417)
T d1pv7a_ 158 VGIMFTI--NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA--NAVG-------------------------ANHSAF 208 (417)
T ss_dssp HHHHHHH--CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS--HHHH-------------------------SCCCCC
T ss_pred ccccccc--cccccccchhhHHHHHHHHHHHHhcccccchhhh--hhhh-------------------------hhcccc
Confidence 6555432 46665555554444 4444455667776532111 0000 000000
Q ss_pred cccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHHHHh
Q 010848 259 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQS---NQLALLLSLAVAGTNAVGTIVGIYLI 335 (499)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~ 335 (499)
......+.++.+..+............. .......+.+........ .............+..++..+.+++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 283 (417)
T d1pv7a_ 209 SLKLALELFRQPKLWFLSLYVIGVSCTY-----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLII 283 (417)
T ss_dssp CHHHHHHHTTSSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHH-----Hhhhccccccccccccccccchhhhcccccccccccccchhhhhhhh
Confidence 0011112222222222222111111110 000111111111111111 11112222333345677888999999
Q ss_pred hccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHH
Q 010848 336 DHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGG 415 (499)
Q Consensus 336 dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 415 (499)
||.++|+.+..+.....++.+.+.. .. .. +.......+ ..+......+...++..|.+|++.|+++.+
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~~~----~~----~~---~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSVRIIGSSF----AT----SA---LEVVILKTL-HMFEVPFLLVGCFKYITSQFEVRFSATIYL 351 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHT----CC----CH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred cccccccchhhhHHHHHHhhhcccc----cc----cc---chhhHHHHH-HHHHHHHHHHHHHHHHHHHCCHhHHHHHHH
Confidence 9999999887766555554443321 11 11 111111111 112222234566778899999999999998
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 010848 416 MSAT-VNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFL 472 (499)
Q Consensus 416 ~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~~l~ 472 (499)
+... ...++..+++...+.+.|..|+...|++.+++.++..++..+.+++++..+++
T Consensus 352 ~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 7654 45688888888888889999998899999999998888888888888877774
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.7e-11 Score=118.46 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 010848 72 LQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAE 151 (499)
Q Consensus 72 ~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e 151 (499)
..+...+...++..++..+.+++.||+|||+.+.++.++..++.++..+.++.+.+++.-++.|++.+...+....++.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 339 (417)
T d1pv7a_ 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccchhhHh-HHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHh
Q 010848 152 ASPSEVRGGLVSTN-VLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 210 (499)
Q Consensus 152 ~~p~~~Rg~~~~~~-~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~ 210 (499)
.+|+|+||+..+.. .....+|..+++.+.+.+.+.. +|+..|++.++..++..++..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988864 4556678888887766665432 5999999888777665555433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.9e-11 Score=117.90 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=109.7
Q ss_pred chHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhH
Q 010848 297 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 376 (499)
Q Consensus 297 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 376 (499)
..|. +++.|.+..+.+...+.... +..++.+++|+++||+|||+.+..+.....++.++.........+ ...
T Consensus 47 ~~p~-~~~~g~s~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 118 (447)
T d1pw4a_ 47 AMPY-LVEQGFSRGDLGFALSGISI-AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS------IAV 118 (447)
T ss_dssp HHHH-TTSSTTCSSCHHHHHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS------SSH
T ss_pred HHHH-HHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh------HHH
Confidence 3454 45678998888887766554 478999999999999999999888777666665555432211111 011
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhhHHHHHHHHHH
Q 010848 377 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLA 455 (499)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~f~~~~~~~~~~ 455 (499)
... ..+..........+....+..|.+|++.|+++.++......++..+++.......+. .+|+..|++.+.+.++.
T Consensus 119 ~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 196 (447)
T d1pw4a_ 119 MFV--LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 196 (447)
T ss_dssp HHH--HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred HHH--HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHH
Confidence 111 111122222223355567889999999999999999988888887777665554444 46788888888888887
Q ss_pred HHHHHHhcccCCC
Q 010848 456 VVFVILFVPETQG 468 (499)
Q Consensus 456 ~~~~~~~~pet~~ 468 (499)
.++.+++.+|++.
T Consensus 197 ~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 197 ALFAFAMMRDTPQ 209 (447)
T ss_dssp HHHHHHHCCCSST
T ss_pred HHHHHHhcccchh
Confidence 7777777776543
|