Citrus Sinensis ID: 010851

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccccEEEEcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccEEEEcccccEEEEEcccccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHHcccccccEEEcEcEEEEEEEc
Coil and Loop (DISEMBL)
mgqslnsmnqhqqrqsKDELLYQWVIAGDVDAIRALRSQGaslewmdkegktpLIVACMDSGLINVAKTLIELGAninayrpggrggtplhhaakrgLEPTVRLLLSCGanalvrnddchtALGVARIKGHINVVRAIESHICYFCgwlrefygpsflEALAPQLMSRKIWVVVIpcgtanpskplrfelviypslqdvqPRAVIALWKAKidepkfhqpdpsltiyDQATKIRYKFasanegdkhQLQWLDnacrgtsqsaeainangwgnsanaeshngwgaaarteascsgwmdepkkedykgwgdeqakedyngwgasnsepvcgkredgqthntpapilqtstrisgkedyngwgvpnfepifkqsqdvqtlanpapfsqisnrnsssasaapsappipevesgegpirypsvensvadlhlpvledgvsasnvkddgsssscvicweapvegacvpcghmagcmSCLSeikakkgdcpvcrtkINQVIRLYTV
Flexible Loop (DISEMBL)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIdepkfhqpdpslTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKRedgqthntpapilqtstrisgKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEikakkgdcpvcrtkinqvirlytv
Low Complexity Region (SEG)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNsssasaapsappipEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered region (IsUnstruct)
*******************LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACR**************************************************************************************************DYNGWGVPNFEPIF******************************************************************************SCVICWEAPVEGACV**************************************
Disordered Region (DISOPRED)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQSA*******************************************************************************************************************************************************************************************ICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered Region (DISEMBL)
*****************DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQSAEAINANGWGNSANAESH**************GWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQI*********************SGEGPIRYPSVENSVADLHLPVLEDGVSAS*********SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered Region (DISPRO)
******S*NQ****QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNS*************N*P*****T*********YNGWGVPNFEPIFK********ANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADL*******************SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	499	2.2.26 [Sep-21-2011]
Q7XI08	513	Probable E3 ubiquitin-pro	yes	no	0.921	0.896	0.453	1e-122
Q4FE47	462	Putative E3 ubiquitin-pro	no	no	0.496	0.536	0.584	2e-89
Q9FPH0	376	Putative E3 ubiquitin-pro	no	no	0.501	0.664	0.527	2e-76
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.234	0.342	0.35	4e-11
Q9VCA8	4001	Ankyrin repeat and KH dom	yes	no	0.218	0.027	0.369	2e-10
O75179	2603	Ankyrin repeat domain-con	no	no	0.250	0.048	0.338	2e-09
Q99NH0	2603	Ankyrin repeat domain-con	no	no	0.250	0.048	0.338	2e-09
Q505D1	1053	Serine/threonine-protein	no	no	0.224	0.106	0.362	3e-09
Q8IWZ3	2542	Ankyrin repeat and KH dom	no	no	0.264	0.051	0.313	6e-09
O44997	1425	Death-associated protein	yes	no	0.216	0.075	0.333	8e-09

>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1

 Score =  438 bits (1126), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/536 (45%), Positives = 317/536 (59%), Gaps = 76/536 (14%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ V  G+ D IRALR+QGA LEW+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 184 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 243

Query: 254 ACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYK-------- 305
           AC G  Q A  + A      ANA   N   A     +S    +  P KED +        
Sbjct: 244 ACCGIPQVASMVPA----QPANAPLPNPSSA-----SSLPSVISTPSKEDAELAMAINAS 294

Query: 306 ----------------------GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPI 343
                                  WG+  +    NGWG  ++      +  GQ      P+
Sbjct: 295 ILSAIAEGVPDVQPITTTTATNDWGNPPSN-SLNGWGPPDTS--APSKTSGQV-----PV 346

Query: 344 LQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPI 403
           + +S+       YNGW VP       QS      +  + F  +  + +  +   P+APP+
Sbjct: 347 VTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPVPTAPPL 397

Query: 404 PEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK-------------DDGSSSS--- 447
                 +GPI+YPS++++  D+ +P  + G + S+ K             D  +S+S   
Sbjct: 398 AVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANASNSGNT 457

Query: 448 ----CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
               CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY V
Sbjct: 458 PPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 513

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1

 Score =  330 bits (846), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/272 (58%), Positives = 192/272 (70%), Gaps = 24/272 (8%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q+QSK ELLYQ V  G+ + IRAL   G  LEWMD+EGKTPLI+ACM+S L +VAKTLIE
Sbjct: 3   QQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTLIE 62

Query: 73  LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           LG+N+NAYRPG   GTPLHHAAKRGLE TV+LLLS GAN LV NDDC T L VAR+KG  
Sbjct: 63  LGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKGFS 122

Query: 133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
           NVVRAIE HIC F GW+REFYGP+FL+  APQL+SR++WVV++P G+ NP+KP + ELV+
Sbjct: 123 NVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLELVV 182

Query: 193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT--------------------- 231
           Y SLQD QPR V+ LWKA ++EPK  Q D S+ I D +T                     
Sbjct: 183 YASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVCASHGRRRPQ 242

Query: 232 ---KIRYKFASANEGDKHQLQWLDNACRGTSQ 260
              + R KFA + EGD  QL+W  +AC+G  Q
Sbjct: 243 VVRQTRLKFAPSTEGDSQQLKWFCDACKGIPQ 274

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34 OS=Arabidopsis thaliana GN=XBAT34 PE=2 SV=1

 Score =  286 bits (733), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/275 (52%), Positives = 184/275 (66%), Gaps = 25/275 (9%)

Query: 11  HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTL 70
            QQ QSKDE+L+Q V   +V+ I++L  +GA LE +DK G+TPLI+AC +  L +VAKTL
Sbjct: 3   QQQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVAKTL 62

Query: 71  IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           +ELG+N+NAYR G  GGTPLHHAAKRGL  TV+LLLS GAN LV +DD  TAL VAR +G
Sbjct: 63  LELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVARDEG 122

Query: 131 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFEL 190
           + NVVRAIESHIC F G +RE+ G S L   APQL+SRK+WVVV+P G+ NP+KPL+ EL
Sbjct: 123 YSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLKLEL 182

Query: 191 VIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA-------------------- 230
           V+Y S+QD QPR VI LWKA ++EPK  + D S+ I D +                    
Sbjct: 183 VLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDSRSPKSMRQRRESGFISQARR 242

Query: 231 -----TKIRYKFASANEGDKHQLQWLDNACRGTSQ 260
                 +IR K A+  +GD  Q+ W   AC+G  Q
Sbjct: 243 WAQVDRQIRLKLAAEIKGDMKQMNWFSEACKGVPQ 277

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           +++Q    GDV+ ++A  + G + +  D EG+T L  AC   G +  A+ LI+ GA++NA
Sbjct: 221 IVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGELKCAQVLIDAGASVNA 279

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                   TPLH+AA  G +  V LLL  GA   ++N D  T + VA++   + VV+ +E
Sbjct: 280 V--DKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLE 337

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD ++ L   GA++E  ++ G TPL+ A   +G + VAK L+E GA IN +    +  
Sbjct: 663 GQVDVVKVLLKHGANVEEQNENGHTPLMEAA-SAGHVEVAKVLLEHGAGINTHSNEFKE- 720

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           + L  A  +G    VR LL  GA+   + D+ HTAL  A + GH+ V R +
Sbjct: 721 SALTLACYKGHLDMVRFLLQAGADQEHKTDEMHTALMEASMDGHVEVARLL 771

Mediator of receptor tyrosine kinase (RTK) signaling, and may act either downstream of MAPK or transduce signaling through a parallel branch of the RTK pathway.

Drosophila melanogaster (taxid: 7227)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 12   QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
            Q   + D  L      G  + ++ L  +GAS+E  DK+G TPLI+A   +G + V + L+
Sbjct: 1078 QTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAAT-AGHVGVVEILL 1136

Query: 72   ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            + GA+I A     +  TPL  A   G +  V LLL+ GAN   RN   +T L +A   G+
Sbjct: 1137 DNGADIEAQSERTKD-TPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGY 1195

Query: 132  INVVRAI 138
            +N+++ +
Sbjct: 1196 VNIIKIL 1202

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 12   QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
            Q   + D  L      G  + ++ L  +GAS+E  DK+G TPLI+A   +G + V + L+
Sbjct: 1074 QTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAAT-AGHVGVVEILL 1132

Query: 72   ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            + GA+I A     +  TPL  A   G +  V LLL+ GAN   RN   +T L +A   G+
Sbjct: 1133 DNGADIEAQSERTKD-TPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGY 1191

Query: 132  INVVRAI 138
            +N+++ +
Sbjct: 1192 VNIIKIL 1198

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 17  KDELLYQWV-IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
           KD     W    G ++ ++ L S GA +   DK+  TPL  A   SG+I+V K L++LG 
Sbjct: 172 KDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAA-SSGMISVVKYLLDLGV 230

Query: 76  NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
           ++N   P   G TPLH A   G +  V  L+ CGAN   +N+   T L  A    H
Sbjct: 231 DMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTH 284

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 5   LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI 64
           L+  + + Q  + +  L      G VD ++ L ++GA++E  ++ G TPL+ A   +G +
Sbjct: 293 LHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAA-SAGHV 351

Query: 65  NVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG 124
            VA+ L++ GA IN +    +  + L  A  +G    VR LL  GA+   + D+ HTAL 
Sbjct: 352 EVARVLLDHGAGINTHSNEFKE-SALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALM 410

Query: 125 VARIKGHINVVRAI 138
            A + GH+ V R +
Sbjct: 411 EACMDGHVEVARLL 424

May play a role as a scaffolding protein that may be associated with the abnormal phenotype of leukemia cells. Isoform 2 may possess an antiapoptotic effect and protect cells during normal cell survival through its regulation of caspases.

Homo sapiens (taxid: 9606)

>sp|O44997|DAPK_CAEEL Death-associated protein kinase dapk-1 OS=Caenorhabditis elegans GN=dapk-1 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD ++AL    + ++ ++++GKT LI+A +++G +++A  LI  G +IN       G 
Sbjct: 536 GHVDCVQALLDANSPIDAVEQDGKTALIIA-LENGNVDIASILITNGCDIN--HADHHGD 592

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           T LH A+K GL   V+ L  C       N +  TAL +A   GH++++R +
Sbjct: 593 TALHIASKHGLLQAVQTLCHCAVTVDSVNANKKTALHLAAHYGHVDIIRVL 643

Negative regulator of barrier repair and innate immune responses to wounding. Appears to act downstream from or in parallel to muscarinic signaling in the regulation of autophagy.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
109676318	499	auxin-regulated protein-like protein [Po	0.887	0.887	0.542	1e-152
225446355	497	PREDICTED: putative E3 ubiquitin-protein	0.887	0.891	0.495	1e-139
212275778	517	uncharacterized protein LOC100191485 [Ze	0.925	0.893	0.460	1e-120
115471873	513	Os07g0446100 [Oryza sativa Japonica Grou	0.921	0.896	0.453	1e-120
357122966	515	PREDICTED: probable E3 ubiquitin-protein	0.959	0.930	0.468	1e-119
147799985	500	hypothetical protein VITISV_013890 [Viti	0.929	0.928	0.474	1e-119
242048338	516	hypothetical protein SORBIDRAFT_02g01061	0.945	0.914	0.462	1e-118
125600072	493	hypothetical protein OsJ_24077 [Oryza sa	0.881	0.892	0.429	1e-110
125558167	493	hypothetical protein OsI_25836 [Oryza sa	0.881	0.892	0.429	1e-110
224082824	261	predicted protein [Populus trichocarpa]	0.515	0.984	0.730	1e-109

>gi|109676318|gb|ABG37641.1| auxin-regulated protein-like protein [Populus trichocarpa]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 301/555 (54%), Positives = 352/555 (63%), Gaps = 112/555 (20%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQSL+SM Q   +QSKDELLYQ  IAG+VDA++AL S+GA LEW+D++GKTPLIVACMD
Sbjct: 1   MGQSLDSMTQ---KQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           SGL NVAK LIE+GAN+NAYRPG   GTPLHHA KRGLE TV+LLLS GANALVRNDDC 
Sbjct: 58  SGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVKLLLSSGANALVRNDDCQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           TAL VARIKG+IN+VR IESHICYF GWLREFYGP FL A APQ +SRKIW  VIP G++
Sbjct: 118 TALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSS 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NP  P + ELVIYPS QDVQPR VIALW A+I+EP F++PDP LTI+DQ+TK +YK ASA
Sbjct: 178 NPMTPKKLELVIYPSSQDVQPRTVIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASA 237

Query: 241 NEGDKHQLQWLDNACRG------------------------------------------- 257
           NEGDK QL WL +AC G                                           
Sbjct: 238 NEGDKQQLHWLYDACSGIPQVMLPPMYGNPPTTVPVVGHHTSAEAVGSAMAIGGGSIQST 297

Query: 258 ---------TSQSAEAINANGWGNSANAESHNGWG---AAARTEASCSGWMDEPKKEDYK 305
                    T QS+E INANGW +    +SHN WG   A+  +EA  SGWM         
Sbjct: 298 TEDNPLHPNTHQSSEVINANGWEDPVRGDSHNRWGVTVASTHSEARSSGWM--------- 348

Query: 306 GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFE 365
               E  KED+NG    N  P                        SG +D+         
Sbjct: 349 ---GEAPKEDHNGCAVPNMGP------------------------SGSQDH--------- 372

Query: 366 PIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADL 425
                   VQT  +  P S+ S  N++S  +APSAPPIP+ E   GPI YPS + S+ DL
Sbjct: 373 --------VQTRYDIPPVSETSGGNTASVPSAPSAPPIPDEELDAGPIHYPSFDFSLLDL 424

Query: 426 HLPVLEDGVS-ASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCP 484
            +P +E G S  S+V   G+SSSC+ICWEAPVEGAC+PCGHMAGCM+CLSEIKAKKG CP
Sbjct: 425 SVPAIELGASVTSDVNKGGTSSSCIICWEAPVEGACIPCGHMAGCMTCLSEIKAKKGVCP 484

Query: 485 VCRTKINQVIRLYTV 499
           +CR+ INQV RLY V
Sbjct: 485 ICRSNINQVTRLYAV 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446355|ref|XP_002274072.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 [Vitis vinifera] gi|302143289|emb|CBI21850.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/553 (49%), Positives = 322/553 (58%), Gaps = 110/553 (19%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQS  SM     RQSKDELLYQ V  G+++AI+AL  +GASLEW D E KTPLIVACMD
Sbjct: 1   MGQSAGSMGG---RQSKDELLYQHVATGNIEAIKALCREGASLEWFDSEAKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           S LI VA+TLI+LGAN+NAYRPG   GTPLHHAAKRGL+ TV+LLLS GANALVRNDD  
Sbjct: 58  SNLIMVAQTLIDLGANVNAYRPGREAGTPLHHAAKRGLDQTVKLLLSKGANALVRNDDGQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           T+L VARI G+INVVR IE+HIC F GWLRE +GP FL+ALAPQL+SRKIWVV+IP G  
Sbjct: 118 TSLDVARINGYINVVRTIENHICLFSGWLRELHGPGFLKALAPQLLSRKIWVVIIPSGFN 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NPSKPLR ELVIY + QD QP  VIAL    I+EPKFHQ DP+L I+D++ K RYK ASA
Sbjct: 178 NPSKPLRLELVIYSNFQDAQPCTVIALGNVNIEEPKFHQSDPALIIFDKSNKTRYKLASA 237

Query: 241 NEGDKHQLQWLDNACRGTSQ---------------------------------------- 260
           NEGDK QL+WL NACRG  Q                                        
Sbjct: 238 NEGDKQQLRWLYNACRGIPQVLPTPMLHDARPSVPASQTATEAAELAMAVGASIQSAAVD 297

Query: 261 ----------SAEAINANGWGNSANAESHNGW---GAAARTEASCSGWMDEPKKEDYKGW 307
                      +EA + NGWGN  +  SH GW   G    + +S SGW DE K       
Sbjct: 298 QPVLLSSTRLGSEASSTNGWGNPVDNTSHGGWSLDGTPTHSASSSSGWADESK------- 350

Query: 308 GDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPI 367
                + ++NG G   S  +  + +  +T N    ++QTS               N  P+
Sbjct: 351 -----RGEFNGLGVPESRLIRNQTQLNKTQNNIPQVVQTS---------------NTNPV 390

Query: 368 FKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHL 427
                                                     EGP+ YP ++ S  DL +
Sbjct: 391 LASPAPSAPPI--------------------------PEALTEGPVYYPPIDLSPVDLSV 424

Query: 428 PVLE-DGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVC 486
           P  E D    S  KD G SSSCVICWEAP+EGAC+PCGHMAGCM+CL+EIKAKKG CPVC
Sbjct: 425 PAAEYDAAGTSKTKDKGDSSSCVICWEAPIEGACIPCGHMAGCMTCLNEIKAKKGVCPVC 484

Query: 487 RTKINQVIRLYTV 499
           R KI QVI+LY V
Sbjct: 485 RAKIQQVIKLYAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212275778|ref|NP_001130389.1| uncharacterized protein LOC100191485 [Zea mays] gi|194689006|gb|ACF78587.1| unknown [Zea mays] gi|195647730|gb|ACG43333.1| protein binding protein [Zea mays] gi|224031463|gb|ACN34807.1| unknown [Zea mays] gi|414884433|tpg|DAA60447.1| TPA: putative RING zinc finger and ankyrin repeat containing protein [Zea mays]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/538 (46%), Positives = 315/538 (58%), Gaps = 76/538 (14%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+VD IR LR QGA LEW+DKEGKTPL++ACM   L +VAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNVDGIRTLRGQGAGLEWIDKEGKTPLMLACMRPDLFDVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GL+ TV LLLS GAN  + NDDC+TAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSHCGTALHHAAKKGLQQTVHLLLSHGANPFIPNDDCNTALELAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  +C FCGW+RE Y P+FL+A+APQ M+RKIW VV+P     P++PL+ E+ IY
Sbjct: 124 VVRAIEGRLCLFCGWMRENYAPAFLDAIAPQFMTRKIWAVVLPREVRTPTRPLKLEIAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PR+V+ LWK +I++PK +Q DPS+ I+D+ TK RYK   A EGDK QLQW  N
Sbjct: 184 PELQASKPRSVLKLWKCQIEQPKLNQADPSIIIFDKGTKTRYKILPAYEGDKQQLQWFYN 243

Query: 254 ACRGTSQ---SAEAINAN-GWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYK---- 305
           AC G +Q   +A    AN    N A A S     + A +E S       P KED +    
Sbjct: 244 ACCGMAQVLNTAPVAPANLPMPNPAPAIS-----SVAPSEQSA------PSKEDVELAMA 292

Query: 306 ----------------GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHN------TPAPI 343
                                 +  + NGW A  S           +HN      TPAP 
Sbjct: 293 INASIQSAIAEGVSVPNVQPNASTPNNNGWAAPPS----------NSHNGWGPPATPAPS 342

Query: 344 L---QTSTRISG--KEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAP 398
               Q+  R+       YNGW VP        S+  QT  NP     +  + +  A   P
Sbjct: 343 KTSGQSQVRVDAPSSSTYNGWDVPGTSSSQSSSKPHQTQTNP---PVLIPQEALQALPTP 399

Query: 399 SAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSAS---------------NVKDDG 443
           +APP  E     GP+ YPS++++  D+ +P    G S +               +  D G
Sbjct: 400 TAPPFAEETFYNGPVHYPSIDSTPVDVTMPATTGGGSTTVIATAAPTEQLENEADASDSG 459

Query: 444 S--SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
              S +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR  INQV+RLY V
Sbjct: 460 KTPSGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRATINQVVRLYAV 517

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115471873|ref|NP_001059535.1| Os07g0446100 [Oryza sativa Japonica Group] gi|75327171|sp|Q7XI08.1|XB34_ORYSJ RecName: Full=Probable E3 ubiquitin-protein ligase XBOS34; AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBOS34; AltName: Full=XB3 protein homolog 4 gi|33146928|dbj|BAC79949.1| auxin-regulated protein-like protein [Oryza sativa Japonica Group] gi|113611071|dbj|BAF21449.1| Os07g0446100 [Oryza sativa Japonica Group]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/536 (45%), Positives = 317/536 (59%), Gaps = 76/536 (14%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ V  G+ D IRALR+QGA LEW+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 184 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 243

Query: 254 ACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYK-------- 305
           AC G  Q A  + A      ANA   N   A     +S    +  P KED +        
Sbjct: 244 ACCGIPQVASMVPA----QPANAPLPNPSSA-----SSLPSVISTPSKEDAELAMAINAS 294

Query: 306 ----------------------GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPI 343
                                  WG+  +    NGWG  ++      +  GQ      P+
Sbjct: 295 ILSAIAEGVPDVQPITTTTATNDWGNPPSN-SLNGWGPPDTS--APSKTSGQV-----PV 346

Query: 344 LQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPI 403
           + +S+       YNGW VP       QS      +  + F  +  + +  +   P+APP+
Sbjct: 347 VTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPVPTAPPL 397

Query: 404 PEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK-------------DDGSSSS--- 447
                 +GPI+YPS++++  D+ +P  + G + S+ K             D  +S+S   
Sbjct: 398 AVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANASNSGNT 457

Query: 448 ----CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
               CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY V
Sbjct: 458 PPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 513

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122966|ref|XP_003563184.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS34-like [Brachypodium distachyon]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/519 (46%), Positives = 314/519 (60%), Gaps = 40/519 (7%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+++ IR LR+QGA LEW+DKEGKTPL+VA M   L+NVAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNIEGIRTLRTQGAGLEWIDKEGKTPLMVASMRPDLLNVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAKRGLE TV LLLS GAN  + NDDC+TAL +AR KGH+ 
Sbjct: 64  GANVNAYRPGSHAGTALHHAAKRGLELTVHLLLSHGANPFITNDDCNTALDLAREKGHVK 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ M+RKIW V++P    NP++P++ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFMTRKIWAVILPREARNPARPVKLELAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PRAV+ LWK++I+EPK++Q DPS+ I+D+ TK RYK  SA EGDK Q++   +
Sbjct: 184 PELQASKPRAVVKLWKSQIEEPKYNQADPSMAIFDKVTKTRYKILSAFEGDKQQIRSFYS 243

Query: 254 ACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYK-GWGDEQA 312
           AC G +Q    + A      ANA   N       +  S    +  P KED +       +
Sbjct: 244 ACCGMAQVVSMVPA----RPANAPVPNPLPINTSSTPSV---LSTPSKEDVELAMAINAS 296

Query: 313 KEDYNGWGASNSEPVCGKRED---GQTHNTP-----APILQTSTRISGK--------EDY 356
            +     G  N EP          G T N+       P     ++ISG+          Y
Sbjct: 297 IQSAIAEGVPNIEPTTSTINTNGWGNTANSSLSGWGPPDAHAPSKISGQGQADAPSSSTY 356

Query: 357 NGWGVPNFEPIFKQSQDVQTLANPAPF------SQISNRNSSSASAAPSAPPIPEVESGE 410
           NGW +P        S   ++  NP+          +    +  A   P+APP+ E     
Sbjct: 357 NGWDIPGTSASQSSSTPNKSQTNPSVVIPQEVPPTVPTPTALPAIPTPTAPPLAEGTFYN 416

Query: 411 GPIRYPSVENSVADLHLPVLEDGVSASNVK---DDGSSSS-------CVICWEAPVEGAC 460
           GPI+YPS++ +  D+ +P  E  V  ++ K   +D  +SS       CVIC +APVEGAC
Sbjct: 417 GPIQYPSIDFTPVDVTMPTAEGAVVVNSSKPGENDADTSSGNTPSGTCVICLDAPVEGAC 476

Query: 461 VPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
           +PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY V
Sbjct: 477 IPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 515

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799985|emb|CAN72662.1| hypothetical protein VITISV_013890 [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/521 (47%), Positives = 310/521 (59%), Gaps = 57/521 (10%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q+QSKDELL+Q V+ G+V+ I+AL  +GA LEW D+EGKTPLIVACM S L NVAKTLIE
Sbjct: 3   QQQSKDELLHQQVVYGNVEGIKALSREGAGLEWTDREGKTPLIVACMFSELFNVAKTLIE 62

Query: 73  LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           LGAN+NAYRPG   GTPLHHAAK+GLE TV LLLS GANALV NDDC TAL VAR KGH 
Sbjct: 63  LGANVNAYRPGRHAGTPLHHAAKKGLEETVNLLLSHGANALVMNDDCQTALDVARAKGHS 122

Query: 133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
            VVR IESHIC F GWLREFYGP FLE LAPQ +SRK+WVV++PCG+  P+KP + EL I
Sbjct: 123 RVVRVIESHICLFSGWLREFYGPGFLEVLAPQWVSRKVWVVILPCGSRKPTKPFKLELAI 182

Query: 193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT--------------------- 231
           Y SLQD QPR  IALWKA +DE KF  PDP++ I D +T                     
Sbjct: 183 YSSLQDAQPRTTIALWKANMDEAKFEDPDPAVIILDNSTISRGRRRRRCYTSREARCKPR 242

Query: 232 ---KIRYKFASANEGDKHQLQWLDNACRGTSQSAEAINANGWGNSANAESH--------N 280
              + + K A   + D  QLQW    C       +A++   + ++A   +          
Sbjct: 243 ALRQTQIKLAPEKKSDSQQLQWF---CNACKGIPQAMHPPAFLHNAQTPAVPPTAPPTAE 299

Query: 281 GWGAAARTEASCSGWMDE-PKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNT 339
               A    AS    M E P   D     +  A   +N     NS  +         HN 
Sbjct: 300 DLELAMAINASIQSAMQEGPPLLDSPSSFENGASTSWN-----NSVNI-------TNHNC 347

Query: 340 PAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPS 399
           P  ++      S K   +   V    P    +Q +Q        + I +    +++A  S
Sbjct: 348 PDALVAPVAPASSKASSSECVVHEAGPSTNSTQHIQI------ETHIPDIPVQASTA--S 399

Query: 400 APPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSAS-NVKDDGSSSSCVICWEAPVEG 458
           APPI +    +GP++YPS+++S  DL  P  E   +AS   K+ G++SSCVIC +AP+EG
Sbjct: 400 APPIADEVVDDGPVQYPSIDSSPVDLTSPAFETSAAASEQSKEGGAASSCVICLDAPIEG 459

Query: 459 ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
           AC+PCGHMAGCMSCL+EIKAKK  CPVCR KI+QV++LY+V
Sbjct: 460 ACIPCGHMAGCMSCLNEIKAKKWGCPVCRAKIDQVVKLYSV 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242048338|ref|XP_002461915.1| hypothetical protein SORBIDRAFT_02g010610 [Sorghum bicolor] gi|241925292|gb|EER98436.1| hypothetical protein SORBIDRAFT_02g010610 [Sorghum bicolor]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/527 (46%), Positives = 314/527 (59%), Gaps = 55/527 (10%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+VD IR LR QG  LEW+DKEGKTPL+VACM   L +VAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNVDGIRTLRGQGVGLEWIDKEGKTPLMVACMRPDLFDVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GL+ TV LLLS GAN  + NDDC+TAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSHCGTALHHAAKKGLQQTVHLLLSHGANPFIPNDDCNTALELAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  +  FCGW+RE Y P+FL+A+APQ M+RKIW V++P     P++PL+ EL IY
Sbjct: 124 VVRAIEGRLSLFCGWMRENYAPAFLDAIAPQFMTRKIWAVILPREVRTPTRPLKLELAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PR V+ LWK +I++PK +Q DPS+ I+D+ TK RYK   A EGDK QLQW  N
Sbjct: 184 PELQASKPRVVVKLWKCQIEQPKLNQADPSIIIFDKGTKTRYKILPAYEGDKQQLQWFYN 243

Query: 254 ACRGTSQ---SAEAINAN-GWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYK-GWG 308
           AC G +Q   +A    AN    N A A S     + A +E S       P KED +    
Sbjct: 244 ACCGMAQVFNTAPVPPANLPMPNPAPANS-----SVAPSELSA------PSKEDVELAMA 292

Query: 309 DEQAKEDYNGWGASNSEPVCGKRED-------GQTHN------TPAPIL---QTSTRI-- 350
              + +     G  N +P      +         +HN      TPAP     Q+  R+  
Sbjct: 293 INASIQSAIAEGVPNVQPNASTPNNNGWSIPPSNSHNGWGPSVTPAPSKTSGQSQARVDA 352

Query: 351 -SGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESG 409
            S    YNGW VP        S+  +T  NP     +  + +  A   P+APP  E    
Sbjct: 353 PSSSSTYNGWDVPGTSSGQSSSKPHKTETNP---PVLIPQEALQALPTPTAPPFAEETFY 409

Query: 410 EGPIRYPSVENSVADLHLPVLEDGV---------------SASNVKDDGS--SSSCVICW 452
            GP+ YPS++++  D+ +P   +G                + ++  D G   S +CVIC 
Sbjct: 410 SGPVHYPSIDSTPVDVTMPATTEGGTTGSTTAAAPTKQEENEADASDSGKTPSGTCVICL 469

Query: 453 EAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
           +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR  INQV+RLY V
Sbjct: 470 DAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRATINQVVRLYAV 516

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125600072|gb|EAZ39648.1| hypothetical protein OsJ_24077 [Oryza sativa Japonica Group]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/536 (42%), Positives = 303/536 (56%), Gaps = 96/536 (17%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ                    +W+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQ--------------------QWIDKEGKTPLMVASMRPDLINVVQVLIEL 43

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 44  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 103

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 104 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 163

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 164 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 223

Query: 254 ACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYK-------- 305
           AC G  Q A  + A      ANA   N   A     +S    +  P KED +        
Sbjct: 224 ACCGIPQVASMVPA----QPANAPLPNPSSA-----SSLPSVISTPSKEDAELAMAINAS 274

Query: 306 ----------------------GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPI 343
                                  WG+  +    NGWG  ++      +  GQ      P+
Sbjct: 275 ILSAIAEGVPDVQPITTTTATNDWGNPPSN-SLNGWGPPDTS--APSKTSGQV-----PV 326

Query: 344 LQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPI 403
           + +S+       YNGW VP       QS      +  + F  +  + +  +   P+APP+
Sbjct: 327 VTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPVPTAPPL 377

Query: 404 PEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK-------------DDGSSSS--- 447
                 +GPI+YPS++++  D+ +P  + G + S+ K             D  +S+S   
Sbjct: 378 AVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANASNSGNT 437

Query: 448 ----CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
               CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY V
Sbjct: 438 PPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 493

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125558167|gb|EAZ03703.1| hypothetical protein OsI_25836 [Oryza sativa Indica Group]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/536 (42%), Positives = 303/536 (56%), Gaps = 96/536 (17%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ                    +W+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQ--------------------QWIDKEGKTPLMVASMRPDLINVVQVLIEL 43

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 44  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 103

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 104 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 163

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 164 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 223

Query: 254 ACRGTSQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYK-------- 305
           AC G  Q A  + A      ANA   N   A     +S    +  P KED +        
Sbjct: 224 ACCGIPQVASMVPA----QPANAPLPNPSSA-----SSLPSVISTPSKEDAELAMVINAS 274

Query: 306 ----------------------GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPI 343
                                  WG+  +    NGWG  ++      +  GQ      P+
Sbjct: 275 IQSAIAEGVPDVQPITTTTATNDWGNPPSN-SLNGWGPPDTS--APSKTSGQV-----PV 326

Query: 344 LQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPI 403
           + +S+       YNGW VP       QS      +  + F  +  + +  +   P+APP+
Sbjct: 327 VTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPVPTAPPL 377

Query: 404 PEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK-------------DDGSSSS--- 447
                 +GPI+YPS++++  D+ +P  + G + S+ K             D  +S+S   
Sbjct: 378 AVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANASNSGNT 437

Query: 448 ----CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
               CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY V
Sbjct: 438 PPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 493

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082824|ref|XP_002306854.1| predicted protein [Populus trichocarpa] gi|222856303|gb|EEE93850.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/260 (73%), Positives = 216/260 (83%), Gaps = 3/260 (1%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQSL+SM Q   +QSKDELLYQ  IAG+VDA++AL S+GA LEW+D++GKTPLIVACMD
Sbjct: 1   MGQSLDSMTQ---KQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           SGL NVAK LIE+GAN+NAYRPG   GTPLHHA KRGLE TV+LLLS GANALVRNDDC 
Sbjct: 58  SGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVKLLLSSGANALVRNDDCQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           TAL VARIKG+IN+VR IESHICYF GWLREFYGP FL A APQ +SRKIW  VIP G++
Sbjct: 118 TALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSS 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NP  P + ELVIYPS QDVQPR VIALW A+I+EP F++PDP LTI+DQ+TK +YK ASA
Sbjct: 178 NPMTPKKLELVIYPSSQDVQPRTVIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASA 237

Query: 241 NEGDKHQLQWLDNACRGTSQ 260
           NEGDK QL WL +AC G  Q
Sbjct: 238 NEGDKQQLHWLYDACSGIPQ 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
TAIR|locus:2086263	462	XBAT35 "XB3 ortholog 5 in Arab	0.438	0.474	0.662	9.2e-111
TAIR|locus:505006458	376	XBAT34 "XB3 ortholog 4 in Arab	0.444	0.590	0.605	1.8e-92
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.250	0.363	0.328	9.9e-11
ZFIN|ZDB-GENE-030916-4	728	ankrd6b "ankyrin repeat domain	0.390	0.267	0.277	9.9e-10
UNIPROTKB|Q5ZIZ1	172	PPP1R12A "Protein phosphatase	0.194	0.563	0.35	7.4e-09
UNIPROTKB|E1C4S8	721	ANKRD6 "Uncharacterized protei	0.240	0.166	0.349	9.7e-09
TAIR|locus:4515102961	399	APD4 "ABERRANT POLLEN DEVELOPM	0.172	0.215	0.388	1.5e-08
MGI|MGI:2145661	1053	Ankrd28 "ankyrin repeat domain	0.224	0.106	0.362	1.7e-08
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.222	0.107	0.385	2e-08
ZFIN|ZDB-GENE-030404-2	1041	mib "mind bomb" [Danio rerio (	0.268	0.128	0.255	2.6e-08

TAIR|locus:2086263 XBAT35 "XB3 ortholog 5 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 9.2e-111, Sum P(3) = 9.2e-111
 Identities = 145/219 (66%), Positives = 173/219 (78%)

Query:    13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
             Q+QSK ELLYQ V  G+ + IRAL   G  LEWMD+EGKTPLI+ACM+S L +VAKTLIE
Sbjct:     3 QQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTLIE 62

Query:    73 LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
             LG+N+NAYRPG   GTPLHHAAKRGLE TV+LLLS GAN LV NDDC T L VAR+KG  
Sbjct:    63 LGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKGFS 122

Query:   133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
             NVVRAIE HIC F GW+REFYGP+FL+  APQL+SR++WVV++P G+ NP+KP + ELV+
Sbjct:   123 NVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLELVV 182

Query:   193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT 231
             Y SLQD QPR V+ LWKA ++EPK  Q D S+ I D +T
Sbjct:   183 YASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNST 221

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:505006458 XBAT34 "XB3 ortholog 4 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 1.8e-92, Sum P(3) = 1.8e-92
 Identities = 135/223 (60%), Positives = 169/223 (75%)

Query:     8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
             M Q QQ QSKDE+L+Q V   +V+ I++L  +GA LE +DK G+TPLI+AC +  L +VA
Sbjct:     1 MGQ-QQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVA 59

Query:    68 KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             KTL+ELG+N+NAYR G  GGTPLHHAAKRGL  TV+LLLS GAN LV +DD  TAL VAR
Sbjct:    60 KTLLELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVAR 119

Query:   128 IKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLR 187
              +G+ NVVRAIESHIC F G +RE+ G S L   APQL+SRK+WVVV+P G+ NP+KPL+
Sbjct:   120 DEGYSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLK 179

Query:   188 FELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA 230
              ELV+Y S+QD QPR VI LWKA ++EPK  + D S+ I D +
Sbjct:   180 LELVLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDS 222

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 42/128 (32%), Positives = 70/128 (54%)

Query:    12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
             ++ + ++ +++Q    GDV+ ++A  + G + +  D EG+T L  AC   G +  A+ L+
Sbjct:   215 EEGEEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGEVRCAQVLL 273

Query:    72 ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
             + GAN NA        TPLH+AA  G +  V LLL  GA    +N D    + VAR+   
Sbjct:   274 DAGANANAIDKNKN--TPLHYAAGYGRKECVSLLLENGAAVTQQNMDNKNPIDVARLNNQ 331

Query:   132 INVVRAIE 139
             ++VV+ +E
Sbjct:   332 LDVVKLLE 339

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030916-4 ankrd6b "ankyrin repeat domain 6b" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 9.9e-10, P = 9.9e-10
 Identities = 56/202 (27%), Positives = 94/202 (46%)

Query:    21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
             L++  + G+ D I AL  +G +L+  DK+G T L  A    G     K L++ GAN++A 
Sbjct:    81 LHRAAVVGNTDVISALVQEGCALDRQDKDGNTALHEAAWH-GFSQTVKLLVKAGANVHAK 139

Query:    81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G   T LH A + G   + R+LL  G+    +N    T L V+    H++V+RA+  
Sbjct:   140 NKAGN--TALHLACQNGHVQSCRVLLLGGSRPDSKNSVGDTCLHVSARYNHVSVIRALLG 197

Query:   141 HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ 200
              IC      R   G + L  +A  L  RK   +++  G  +  K    E  +  + ++  
Sbjct:   198 AICSVTD--RNHTGDTALH-IAASLNHRKTVRMLLEAGADSRIKNNTGETALDQARENNS 254

Query:   201 PRAVIALWKAKID-EPKFHQPD 221
             P   + L KA  + + + H+ +
Sbjct:   255 PEVALLLTKAPAELQSRTHREE 276

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0030877 "beta-catenin destruction complex" evidence=NAS

GO:0048264 "determination of ventral identity" evidence=IMP

GO:0046330 "positive regulation of JNK cascade" evidence=IDA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IGI

GO:0008013 "beta-catenin binding" evidence=NAS

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

UNIPROTKB|Q5ZIZ1 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 35/100 (35%), Positives = 53/100 (53%)

Query:    27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
             +GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN  +P   G
Sbjct:    50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANIN--QPDNEG 106

Query:    87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
               PLH AA  G       L+S GA+    N +  T L +A
Sbjct:   107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

GO:0000776 "kinetochore" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

UNIPROTKB|E1C4S8 ANKRD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
 Identities = 43/123 (34%), Positives = 65/123 (52%)

Query:    21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
             L++  + G+ D I +L  +G +L+  DK+G T L  AC   G    AK L++ GAN+ A 
Sbjct:    79 LHRAAVVGNTDVIASLIQEGCALDRQDKDGNTALHEACWH-GFSQSAKVLVKAGANVLAK 137

Query:    81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G   TPLH A +     + R+LL  G+ A ++N+   T L VA    H+ +VR + S
Sbjct:   138 NKAGN--TPLHLACQNSHSQSTRVLLLGGSRADLKNNAGDTCLHVAARYNHLPIVRVLLS 195

Query:   141 HIC 143
               C
Sbjct:   196 AFC 198

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

TAIR|locus:4515102961 APD4 "ABERRANT POLLEN DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 35/90 (38%), Positives = 50/90 (55%)

Query:   409 GEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAG 468
             GEG   + S ++SV    L    D    ++V +  + S C IC++AP +   +PCGH   
Sbjct:   313 GEG---FLSEDDSVRTCLLADKGDNDCCNDV-EASNKSLCAICFDAPRDCCFLPCGHCVS 368

Query:   469 CMSCLSEIKAKKGDCPVCRTKINQVIRLYT 498
             C  C ++IK  KG CP+CR KI  V R+YT
Sbjct:   369 CYQCGTKIKRTKGRCPICRKKIMHVKRIYT 398

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

MGI|MGI:2145661 Ankrd28 "ankyrin repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 42/116 (36%), Positives = 58/116 (50%)

Query:    17 KDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
             KD     W    G ++ ++ L S GA +   DK+  TPL  A   SG+I+V K L++LG 
Sbjct:   172 KDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAA-SSGMISVVKYLLDLGV 230

Query:    76 NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
             ++N   P   G TPLH A   G +  V  L+ CGAN   +N+   T L  A    H
Sbjct:   231 DMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTH 284

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 44/114 (38%), Positives = 58/114 (50%)

Query:    28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             G    +R L + GA  +     G+TPL  A  D G  +V +  +E GA  +     G GG
Sbjct:   684 GHESVVRLLLTHGAQADSKANWGQTPLSRAAFD-GHESVVRLFLEHGAQADC--KDGDGG 740

Query:    88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             TPL  AA  G E  VRLLL  GA A  ++DDC T L  A   G+ +VV+ +  H
Sbjct:   741 TPLSSAAATGHESVVRLLLKHGAQADSKDDDCRTPLSYAASNGYESVVKLLLEH 794

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-030404-2 mib "mind bomb" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 35/137 (25%), Positives = 68/137 (49%)

Query:     6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
             +S++   + +  D  ++      +   I  L   GA L   +K  +TPL +A ++ G + 
Sbjct:   497 HSVDLEAEDKDGDRAVHHAAFGDEGSVIEVLHRGGADLNARNKRRQTPLHIA-VNKGHLQ 555

Query:    66 VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
             V KTL++ G + +       G TPLH A  +  +  + +LL  GA+  + N++   AL  
Sbjct:   556 VVKTLLDFGCHPSLQ--DSEGDTPLHDAISKKRDDMLSVLLEAGADVTITNNNGFNALHH 613

Query:   126 ARIKGHINVVRAIESHI 142
             A ++G+ + +R + S +
Sbjct:   614 AALRGNPSAMRVLLSKL 630

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0001756 "somitogenesis" evidence=IMP

GO:0021986 "habenula development" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0048699 "generation of neurons" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0001885 "endothelial cell development" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0060113 "inner ear receptor cell differentiation" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IEA;IMP

GO:0031076 "embryonic camera-type eye development" evidence=IMP

GO:0045685 "regulation of glial cell differentiation" evidence=IMP

GO:0048259 "regulation of receptor-mediated endocytosis" evidence=IMP

GO:0071599 "otic vesicle development" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

GO:0048793 "pronephros development" evidence=IMP

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0061195 "taste bud formation" evidence=IMP

GO:0021508 "floor plate formation" evidence=IMP

GO:0021521 "ventral spinal cord interneuron specification" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051865 "protein autoubiquitination" evidence=IMP;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0002090 "regulation of receptor internalization" evidence=IDA

GO:0021536 "diencephalon development" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IGI

GO:0021520 "spinal cord motor neuron cell fate specification" evidence=IMP

GO:0021519 "spinal cord association neuron specification" evidence=IMP

GO:0021514 "ventral spinal cord interneuron differentiation" evidence=IMP

GO:0045664 "regulation of neuron differentiation" evidence=IMP

GO:0030318 "melanocyte differentiation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0021654 "rhombomere boundary formation" evidence=IMP

GO:0002064 "epithelial cell development" evidence=IMP

GO:0030902 "hindbrain development" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XI08	XB34_ORYSJ	6, ., 3, ., 2, ., -	0.4533	0.9218	0.8966	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	499
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-14
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	2e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	6e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	3e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	6e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G ++ ++ L   GA +   D +G+TPL +A   +G + + K L+E GA++NA    G
Sbjct: 15  ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAK-NGHLEIVKLLLEKGADVNARDKDG 73

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
              TPLH AA+ G    V+LLL  GA+   R+ D  T L +A   GH+ VV+ +
Sbjct: 74  N--TPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.8 bits (218), Expect = 8e-21
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D++G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AAK G    V+LLL
Sbjct: 4   DEDGRTPLHLAAS-NGHLEVVKLLLENGADVNAKDNDGR--TPLHLAAKNGHLEIVKLLL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+   R+ D +T L +A   G+++VV+ +  H
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.4 bits (186), Expect = 7e-17
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G+++ ++ L  +GA +   D +  T L +A   +G + + K L+E GA++NA    G
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDTD--TALHLAAR-NGNLEIVKLLLEHGADVNAKDKDG 61

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRN 116
              T LH AA+ G    V+LLL  GA+  +++
Sbjct: 62  N--TALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L +A   +G + + K L+E GA++N     G   T LH AA+ G    V+LLL  GA+  
Sbjct: 1   LHLAAK-NGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 114 VRNDDCHTALGVARIKGHINVVRAIESH 141
            ++ D +TAL +A   G++ +V+ +  H
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.2 bits (167), Expect = 6e-14
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G ++ ++ L  +GA +   DK+G TPL +A   +G ++V K L++ GA++NA     
Sbjct: 48  AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR-NGNLDVVKLLLKHGADVNA--RDK 104

Query: 85  RGGTPLHHAAKRGLEPTVRLLL 106
            G TPLH AAK G    V+LLL
Sbjct: 105 DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 493
           CVIC E P     +PCGH+  C  C   +++KK  CP+CR  I  V
Sbjct: 5   CVICLERPRNVVFLPCGHLCLCEECAKRLRSKK-KCPICRQPIESV 49

Length = 49

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.9 bits (165), Expect = 6e-13
 Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 5/142 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM----DS 61
              +   +       L+     GD   ++ L + GA +   D +G TPL +A +      
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 62  GLINVAKTLIELGANI-NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           G I VAK L+E GA++         G TPLH AA  G    V LLL  GA+   RN    
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181

Query: 121 TALGVARIKGHINVVRAIESHI 142
           TAL  A   G I +V+ +    
Sbjct: 182 TALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
            D  L+     G+++ ++ L   GA +   DK+G T L +A   +G + + K L+E GA
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAAR-NGNLEIVKLLLEHGA 85

Query: 76 NINA 79
          +IN 
Sbjct: 86 DINL 89

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
             D +R L   GA +   ++ G TPL +   ++  ++V K LI+ GA++NA      G T
Sbjct: 62  VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA--KDKVGRT 119

Query: 89  PLH-HAA-KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHIC 143
           PLH + +        +RLLL  GA+    +    T L V  +K     + ++R +     
Sbjct: 120 PLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL-LKSRNANVELLRLLIDAGA 178

Query: 144 YFCGWLREFYGPSFLEALA 162
                  +    S L    
Sbjct: 179 DVYA--VDDRFRSLLHHHL 195

Length = 471

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 444 SSSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 488
               C IC +   +     PCGH+  C  C+     KK  CP+CRT
Sbjct: 1   EELECPICLDLLRDPVVLTPCGHVF-CRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 24/138 (17%)

Query: 16  SKDELLYQWVIAGD---VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAK---T 69
             +  LY +++      V+ +R L + GA + +  + GKTPL +  +      V      
Sbjct: 10  IMEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHL-YLHYSSEKVKDIVRL 68

Query: 70  LIELGANINAYRPGGRGGTPLH----HAAKRGLEPTVRLLLSCGANALVRNDDC-----H 120
           L+E GA++NA  P   G TPLH    +A        ++LL+  GA+   + D       H
Sbjct: 69  LLEAGADVNA--PERCGFTPLHLYLYNATT---LDVIKLLIKAGADVNAK-DKVGRTPLH 122

Query: 121 TALGVARIKGHINVVRAI 138
             L    I  +  V+R +
Sbjct: 123 VYLSGFNI--NPKVIRLL 138

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           L+E G  I+     G G TPLH AAK G    V+ LL  G +  +R+ D  TAL +A
Sbjct: 1   LLEHG-PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L Q   +GD    R L + GA     D +G+TPL +AC + G + V + L+E GA+    
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL 144

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
              G+  TPL  A + G    V+LL   
Sbjct: 145 DKDGK--TPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            N    L+  G  IN       G TPLH+A        V+ LL  GAN  + N    T L
Sbjct: 172 KNRVNYLLSYGVPINI--KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229

Query: 124 GVARIKGHINVVRAIESH 141
            +A +  +  + + + ++
Sbjct: 230 HIAILNNNKEIFKLLLNN 247

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 12  QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           +  + K   L+  +  GD+++I+ L   GA +   D  G  P+ +A +     ++ K L+
Sbjct: 120 KDAELK-TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA-IKHNFFDIIKLLL 177

Query: 72  ELGA--NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128
           E GA  N+        G +PLH+AA+ G    ++LL+  G + + +  +  T L  A I
Sbjct: 178 EKGAYANVKDNN----GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII 232

Length = 434

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 447 SCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAKKGDCPVCRTK 489
            C IC +    G  V   PCGH+     CL +       CP+CR  
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVF-HKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           T L  A + SG + + K L+E G +IN  R    G T LH AA+ G    ++LLL
Sbjct: 3   TALHKAAI-SGRLELVKYLLEKGVDIN--RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           G T LH AA  G    V+ LL  G +    ++D +TAL +A   G++ V++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 448 CVICWEAPVEGACV-PCGHMAGCMSCLSE-IKAKKGDCPVCRTKI 490
           C IC E   E   + PCGH+  C SC+ + +K+ K  CP+CRT I
Sbjct: 2   CPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRND 117
           G TPLH AA+ G    V+LLL  GA+   R+ 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 29  DVDA---IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           D++A   +  L S G  +   D  G TPL  A   +      K L++LGAN N       
Sbjct: 168 DINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV-YNNNPEFVKYLLDLGANPNLV--NKY 224

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANA 112
           G TPLH A     +   +LLL+ G + 
Sbjct: 225 GDTPLHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 27  AGDVDAIRALRSQGASLE---WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
            G+++  + L   GA L+     D++G TPL  A + +G  ++ + L+E GA+ N+    
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL-NGDADIVELLLEAGADPNSRNS- 178

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
             G T L  AAK G    V+LLL  G +  +   +
Sbjct: 179 -YGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V+ GD+  I  L    A L+  D  G TPLI+A M  G I + K L++ GANI+ +
Sbjct: 139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGDIAICKMLLDSGANIDYF 197

Query: 81  RPGGRGG--TPLHHAAKRGLEPTVRLLLSCGANA----LVRNDDCHT 121
              G+ G    L +A +      VRL +  GA+     ++  ++C  
Sbjct: 198 ---GKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTI 241

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           D + IR L   GA +   D+   TPL  A       ++  TL+ELGAN+NA     +  T
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK--T 377

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           P+H+AA R     +  LL  GA+    +    TAL  A
Sbjct: 378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           +A+ L+E GA++NA        TP+H+AA+RG    V LLLS GA+  +   D  + L  
Sbjct: 160 IAEMLLEGGADVNAKDIYCI--TPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217

Query: 126 ARIKGHINVVRAI 138
           A    +I+ ++AI
Sbjct: 218 AVDSKNIDTIKAI 230

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGAN 76
           D+     +I  + +  + L S GA +   D+  G T L  A  ++    + + L+  GAN
Sbjct: 137 DKKSKDDII--EAEITKLLLSYGADINMKDRHKGNTALHYAT-ENKDQRLTELLLSYGAN 193

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +N   P     +PLHHA K   +P V +LL  GA+   R+   +T L       HI+V  
Sbjct: 194 VNI--PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPL-------HISVGY 244

Query: 137 AIESHI 142
             +  I
Sbjct: 245 CKDYDI 250

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINA 79
          +G TPL +A   +G + V K L+E GA++NA
Sbjct: 1  DGNTPLHLAAR-NGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 448 CVICWEAPVEGACVPCGHMAGCMSCL--SEIKAKKGDCPVCRTK 489
           C +C E P   +C PCGH+  C+SCL  S  K K   CP+CR K
Sbjct: 218 CFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAK 260

Length = 271

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPG 83
            +    + ++ L   GA++   D  G TPL+ A    S   ++ + L++ GAN+N     
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS- 139

Query: 84  GRGGTPLHHAAKRGLE--PTVRLLLSCGAN 111
             G   LH   +        ++LL+  G +
Sbjct: 140 -DGENLLHLYLESNKIDLKILKLLIDKGVD 168

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 59  MDSGLINVAKT----LIE--LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANA 112
           M S L+ VA T    L+E  L A ++      +G TPLH AA +G E  V +LL    N 
Sbjct: 525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV 584

Query: 113 LVRNDDCHTALGVARIKGHINVVR 136
            +R+ + +TAL  A    H  + R
Sbjct: 585 HIRDANGNTALWNAISAKHHKIFR 608

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGL--INVAKTLIELGANINAYRPGGRGGTPL 90
           +R L   G      D  G TPL      S      V   L+  G +INA      G TPL
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP-LLIAGISINA--RNRYGQTPL 261

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 137
           H+AA        R L++ GA+    + D +T L +     +   VRA
Sbjct: 262 HYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRA 308

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINA 79
          +G+TPL +A   +G + V K L++ GA+INA
Sbjct: 1  DGRTPLHLAAE-NGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           A+ L+  GA+ N     GR  TPLH A   G    VR+LL  GA+  + + D  T L +A
Sbjct: 98  ARILLTGGADPNCRDYDGR--TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Query: 127 RIKGHINVVRAIESH-ICYF----CGWLREFYGPSFLEALAPQLMS 167
              G   VV+ +  H  C+F          F G       +P    
Sbjct: 156 EENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISSH 201

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 25 VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           I+G ++ ++ L  +G  +   D++G T L +A   +G + V K L+
Sbjct: 9  AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE-NGNLEVLKLLL 54

Length = 54

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 434 VSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKIN 491
            ++S    D  + +C IC  +    A  PCGH   C +C   ++A   +  CP+CRT+  
Sbjct: 50  TTSSADDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETE 108

Query: 492 QVI 494
            V+
Sbjct: 109 AVV 111

Length = 493

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           +  +V  I  L   GA +E + ++  T L  A   +      KTLI+ GAN+N+      
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS--KNKD 441

Query: 86  GGTPLHHAAKRGLEPTV-RLLLSCGAN 111
             TPLH+A K+  +  V  +LL  GA+
Sbjct: 442 LSTPLHYACKKNCKLDVIEMLLDNGAD 468

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGAN 111
           G TPLH AA+ G    V+LLL  GA+
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	499
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02917	661	ankyrin-like protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0514	452	consensus Ankyrin repeat protein [General function	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02792	631	ankyrin-like protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.61
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.56
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.41
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.21
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	99.03
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	99.01
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.91
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.91
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.9
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.9
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.89
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.88
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.85
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.8
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.78
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.73
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.72
PF13606	30	Ank_3: Ankyrin repeat	98.69
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.69
PF13606	30	Ank_3: Ankyrin repeat	98.69
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.68
PHA02929	238	N1R/p28-like protein; Provisional	98.68
KOG0522	560	consensus Ankyrin repeat protein [General function	98.67
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.67
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.67
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.66
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.65
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.64
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.62
KOG0522	560	consensus Ankyrin repeat protein [General function	98.59
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.59
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.58
PHA02926	242	zinc finger-like protein; Provisional	98.44
PF14634	44	zf-RING_5: zinc-RING finger domain	98.36
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.35
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.34
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.32
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.31
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.29
KOG2384	223	consensus Major histocompatibility complex protein	98.28
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.24
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.22
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.21
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.19
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.19
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.18
KOG2384	223	consensus Major histocompatibility complex protein	98.05
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.05
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.02
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.0
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.96
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.91
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.88
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.8
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.74
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.73
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.64
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.61
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.59
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.5
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.43
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.41
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.16
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.14
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.09
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.07
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.0
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.94
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.92
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.72
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.7
KOG2505	591	consensus Ankyrin repeat protein [General function	96.56
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.53
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	96.49
KOG2505	591	consensus Ankyrin repeat protein [General function	96.42
COG5152	259	Uncharacterized conserved protein, contains RING a	96.36
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.05
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.02
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.79
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.56
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.53
KOG3002	299	consensus Zn finger protein [General function pred	95.32
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.19
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	95.13
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.98
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.8
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.66
KOG0297	391	consensus TNF receptor-associated factor [Signal t	94.31
PF04641	260	Rtf2: Rtf2 RING-finger	94.21
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	94.02
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.98
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	93.88
KOG1002	791	consensus Nucleotide excision repair protein RAD16	93.85
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	93.8
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.78
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	93.51
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.51
KOG2660	331	consensus Locus-specific chromosome binding protei	93.14
COG5219	1525	Uncharacterized conserved protein, contains RING Z	92.61
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	92.56
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	92.33
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	92.04
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	92.01
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	91.31
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.83
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	89.96
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	89.48
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	89.43
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	88.79
KOG2113	394	consensus Predicted RNA binding protein, contains	88.57
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.95
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	86.42
COG5222	427	Uncharacterized conserved protein, contains RING Z	85.93
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	85.92
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	83.7
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	83.51
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	83.26
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	83.2
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.65
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	80.43
PHA03096	284	p28-like protein; Provisional	80.09

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-37  Score=259.90  Aligned_cols=175  Identities=25%  Similarity=0.242  Sum_probs=163.7

Q ss_pred             cccc-CCCchHHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCCC
Q 010851           10 QHQQ-RQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRG   86 (499)
Q Consensus        10 ~~~~-d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g   86 (499)
                      .+.+ |.+|+||||||+..|+.++|++|++ .+..+|.+|..||||||+||.. |+.|+|+.|+.. |+++|..  ++.|
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~-g~~evVk~Ll~r~~advna~--tn~G  106 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN-GNDEVVKELLNRSGADVNAT--TNGG  106 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc-CcHHHHHHHhcCCCCCccee--cCCC
Confidence            3444 4599999999999999999999995 6788999999999999999987 899999999999 9999999  8999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      +|+||||+.+|+.+|+++|+++|+.++++|..|.||||.|+..|..+++++|+..|+.++  .+|++|+|||| .|...+
T Consensus       107 ~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G~TpL~-~al~e~  183 (226)
T KOG4412|consen  107 QTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYGFTPLH-HALAEG  183 (226)
T ss_pred             cceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccCccHHH-HHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999  99999999999 788889


Q ss_pred             CHHHHHHHHhcCCCCCCCCcccccc
Q 010851          167 SRKIWVVVIPCGTANPSKPLRFELV  191 (499)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~  191 (499)
                      +.++..+|+.+|++.+..+..+ ++
T Consensus       184 ~~d~a~lLV~~gAd~~~edke~-t~  207 (226)
T KOG4412|consen  184 HPDVAVLLVRAGADTDREDKEG-TA  207 (226)
T ss_pred             CchHHHHHHHhccceeeccccC-ch
Confidence            9999999999999998887655 44

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-33  Score=269.76  Aligned_cols=208  Identities=15%  Similarity=0.146  Sum_probs=183.6

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCC
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~   87 (499)
                      .+.+.+|.+|+||||+|+..|+.+++++|+++|++++..+  |+||||+|+.. |+.+++++|+++|++++.+  |..|+
T Consensus        21 ~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~-g~~eiV~lLL~~Gadvn~~--d~~G~   95 (284)
T PHA02791         21 KDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGMDDSQF--DDKGN   95 (284)
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCC
Confidence            3456789999999999999999999999999999988764  78999999997 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCC-CHHHHHHHcCCHHHHHHHHHccccccccccc-ccCCCHHHHHhhhc
Q 010851           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH-TALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQL  165 (499)
Q Consensus        88 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~Lh~~A~~~  165 (499)
                      ||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.++|++|++++.+..    | ..|+|||| +|+..
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~----d~~~g~TpLh-~Aa~~  170 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIH-ITIKN  170 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc----ccccCccHHH-HHHHc
Confidence            999999999999999999999999999998885 89999999999999999999986543    3 35899999 99999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCcccccc-cCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhH
Q 010851          166 MSRKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYK  236 (499)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~  236 (499)
                      |+.+++++|+++|++++.++..+.++ ++.+...+....+..|+..          +..++.+|.+| ++|+
T Consensus       171 g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~----------Ga~in~~~~~~-~~l~  231 (284)
T PHA02791        171 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY----------DINIYSVNLEN-VLLD  231 (284)
T ss_pred             CCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC----------CCCCccCcccC-ccCC
Confidence            99999999999999999998888876 8888888887776665533          34478888854 6663

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-34  Score=241.49  Aligned_cols=207  Identities=20%  Similarity=0.213  Sum_probs=183.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCC-CCcccCC-CCChHHHHHHHcCCcHHHHHHHH-HcCCCCCccCCCCCCCcHHHHH
Q 010851           17 KDELLYQWVIAGDVDAIRALRSQGA-SLEWMDK-EGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~-~g~TpLh~Aa~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      +.++.+.++......-|+.|++... .++.++. +|+||||+||.. |+.+++++|+ +.+..+|.+  |..||||||+|
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~-g~~eiv~fLlsq~nv~~ddk--DdaGWtPlhia   79 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSF-GHVEIVYFLLSQPNVKPDDK--DDAGWTPLHIA   79 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeec-CchhHHHHHHhcCCCCCCCc--cccCCchhhhh
Confidence            4677888898888899999998765 6777765 999999999998 9999999999 557777766  89999999999


Q ss_pred             HHcCCHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851           94 AKRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      +..|+.++|+.|+.+ |+|+|..+..|.|+||||+..|..+|+++|+++|+.++  .+|..|.|||| -|+..|+.++++
T Consensus        80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplH-RAAavGklkvie  156 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLH-RAAAVGKLKVIE  156 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhH-HHHhccchhhHH
Confidence            999999999999999 99999999999999999999999999999999999999  99999999999 999999999999


Q ss_pred             HHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          173 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       173 ~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      +|+..|+..|.++..+.+++|.+.-++.+.....|..          .++++++.|++| |++..+..
T Consensus       157 ~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~----------~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  157 YLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR----------AGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHH----------hccceeeccccC-chHHHHHH
Confidence            9999999999999999999999876666554443322          245589999988 99888774

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.2e-32  Score=290.12  Aligned_cols=180  Identities=16%  Similarity=0.133  Sum_probs=158.5

Q ss_pred             cCcccc-CCCchHHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCc--HHHHHHHHHcCCCCCccCC
Q 010851            8 MNQHQQ-RQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL--INVAKTLIELGANINAYRP   82 (499)
Q Consensus         8 ~~~~~~-d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~--~~~v~~Ll~~ga~~~~~~~   82 (499)
                      +++|.+ |..|.||||+|+.  +++.++|++|+++|+++|.+|..|.||||+|+.. |+  .++|++|+++|+++|.+  
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~-g~~~~eIVklLLe~GADVN~k--  243 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLIT-GNVCASVIKKIIELGGDMDMK--  243 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCCCHHHHHHHHHcCCCCCCC--
Confidence            677887 8899999999875  4678999999999999999999999999999987 64  58999999999999998  


Q ss_pred             CCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHHCCCCCcccCCCCCCHHHH
Q 010851           83 GGRGGTPLHHA-------------------------------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGV  125 (499)
Q Consensus        83 d~~g~TpL~~A-------------------------------------~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~  125 (499)
                      |..|+||||+|                                     +..|+.+++++|+++|++++.+|..|+||||+
T Consensus       244 D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~  323 (764)
T PHA02716        244 CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQ  323 (764)
T ss_pred             CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHH
Confidence            88999999975                                     34578889999999999999999999999999


Q ss_pred             HHH--cCCHHHHHHHHHcccccccccccccCCCHHHHHhhh--------------cCCHHHHHHHHhcCCCCCCCCcccc
Q 010851          126 ARI--KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ--------------LMSRKIWVVVIPCGTANPSKPLRFE  189 (499)
Q Consensus       126 A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~--------------~~~~~~~~~Ll~~ga~~~~~~~~~~  189 (499)
                      |+.  .++.+++++|+++|++++  .+|..|+|||| +|+.              .++.+++++|+++|++++.++..+.
T Consensus       324 Aaa~~~~~~eIVklLLe~GADIN--~kD~~G~TPLH-~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~  400 (764)
T PHA02716        324 YILRHNISTDIIKLLHEYGNDLN--EPDNIGNTVLH-TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGY  400 (764)
T ss_pred             HHHHhCCCchHHHHHHHcCCCCc--cCCCCCCCHHH-HHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCC
Confidence            764  467899999999999998  89999999999 5543              3678999999999999999999999


Q ss_pred             cccC
Q 010851          190 LVIY  193 (499)
Q Consensus       190 ~~l~  193 (499)
                      ++++
T Consensus       401 TPLh  404 (764)
T PHA02716        401 TPLT  404 (764)
T ss_pred             ChHH
Confidence            9987

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=277.45  Aligned_cols=219  Identities=17%  Similarity=0.181  Sum_probs=192.4

Q ss_pred             CccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCC------------
Q 010851            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN------------   76 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~------------   76 (499)
                      ..+..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++            
T Consensus        27 ~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         27 CINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI-GAHDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcchhccCCHH
Confidence            3566788899999999999999999999999999999999999999999997 999999999887754            


Q ss_pred             -----------CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 010851           77 -----------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF  145 (499)
Q Consensus        77 -----------~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  145 (499)
                                 ++.+  +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       106 ~i~~ll~~g~d~n~~--~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~  183 (434)
T PHA02874        106 MIKTILDCGIDVNIK--DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA  183 (434)
T ss_pred             HHHHHHHCcCCCCCC--CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC
Confidence                       5555  788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCcee
Q 010851          146 CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLT  225 (499)
Q Consensus       146 ~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  225 (499)
                      +  .++..|+|||| +|+..++.+++++|+++|++.+.++..+.++++.+...... .+.. +.          .+..++
T Consensus       184 n--~~~~~g~tpL~-~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~-~i~~-Ll----------~~~~in  248 (434)
T PHA02874        184 N--VKDNNGESPLH-NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIEL-LI----------NNASIN  248 (434)
T ss_pred             C--CCCCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH-HHHH-HH----------cCCCCC
Confidence            8  89999999999 99999999999999999999999988899999888765431 1111 11          133477


Q ss_pred             eecCCCcchhHhHhhCCCCH
Q 010851          226 IYDQATKIRYKFASANEGDK  245 (499)
Q Consensus       226 ~~d~~g~tpl~~a~~~~~~~  245 (499)
                      ..|..|+||||+|+......
T Consensus       249 ~~d~~G~TpLh~A~~~~~~~  268 (434)
T PHA02874        249 DQDIDGSTPLHHAINPPCDI  268 (434)
T ss_pred             CcCCCCCCHHHHHHhcCCcH
Confidence            88899999999998644333

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-31  Score=280.16  Aligned_cols=211  Identities=20%  Similarity=0.199  Sum_probs=184.0

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCc-----------------------------
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-----------------------------   63 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~-----------------------------   63 (499)
                      .+..+.||||+|+..|+.++|++|+++|+++|.+|..|+||||+||.. |+                             
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~  111 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE-PNKLGMKEMIRSINKCSVFYTLVAIKDAFNN  111 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-ccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence            345688999999999999999999999999999999999999999975 32                             


Q ss_pred             -----------------------------------HHHHHHHHHcCCCCCccCCCCC-CCcHHHHHHHcCCHHHHHHHHH
Q 010851           64 -----------------------------------INVAKTLIELGANINAYRPGGR-GGTPLHHAAKRGLEPTVRLLLS  107 (499)
Q Consensus        64 -----------------------------------~~~v~~Ll~~ga~~~~~~~d~~-g~TpL~~A~~~g~~~~v~~Ll~  107 (499)
                                                         .+++++|+++|++++.+  +.. |+||||+|+..|+.+++++|++
T Consensus       112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~--~~~~g~tpLh~A~~~~~~~iv~~Ll~  189 (477)
T PHA02878        112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMK--DRHKGNTALHYATENKDQRLTELLLS  189 (477)
T ss_pred             CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCcc--CCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence                                               23778888899999988  667 9999999999999999999999


Q ss_pred             CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhh-cCCHHHHHHHHhcCCCCCCCCc
Q 010851          108 CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ-LMSRKIWVVVIPCGTANPSKPL  186 (499)
Q Consensus       108 ~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~-~~~~~~~~~Ll~~ga~~~~~~~  186 (499)
                      +|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+. .++.+++++|+++|++++.++.
T Consensus       190 ~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in--~~d~~g~TpLh-~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        190 YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD--ARDKCGNTPLH-ISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            999999999999999999999999999999999999999  99999999999 7775 4789999999999999998875


Q ss_pred             -ccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhC
Q 010851          187 -RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (499)
Q Consensus       187 -~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~  241 (499)
                       .+.+++|.+..  ....+..|+.          .++++++.|..|.|||++|+..
T Consensus       267 ~~g~TpLh~A~~--~~~~v~~Ll~----------~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        267 ILGLTALHSSIK--SERKLKLLLE----------YGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             CCCCCHHHHHcc--CHHHHHHHHH----------CCCCCCCcCCCCCCHHHHHHHH
Confidence             68888888843  2222222221          2455899999999999999863

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=3.5e-31  Score=272.52  Aligned_cols=190  Identities=16%  Similarity=0.130  Sum_probs=172.3

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcC-CcHHHHHHHHHcCCCCCccCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRPGG   84 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~-g~~~~v~~Ll~~ga~~~~~~~d~   84 (499)
                      .+.++|.+|.+|.||||+|+..|+.++|++||++|+++|.+|..|+||||+|+..+ +..+++++|+++|++++... |.
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~-d~  139 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSV-DE  139 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccccc-CC
Confidence            46788999999999999999999999999999999999999999999999998752 24799999999999999632 78


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHcccccccccccccCCCHHHHHh
Q 010851           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEALA  162 (499)
Q Consensus        85 ~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A  162 (499)
                      .|.|||| |+..++.+++++|++.|++++.+|..|+||||+|+..+  +.+++++|+++|++++  .+|.+|+|||| +|
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH-~A  215 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLH-IV  215 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HH
Confidence            9999997 67789999999999999999999999999999998755  4699999999999999  99999999999 88


Q ss_pred             hhcC--CHHHHHHHHhcCCCCCCCCcccccccCccccccCh
Q 010851          163 PQLM--SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP  201 (499)
Q Consensus       163 ~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~  201 (499)
                      +..+  +.+++++|+. |++++.++..+.++++.+......
T Consensus       216 a~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCCh
Confidence            8765  7899999985 899999999999999998877664

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.6e-31  Score=278.22  Aligned_cols=187  Identities=21%  Similarity=0.154  Sum_probs=166.7

Q ss_pred             ccCccccCCCchHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCC-cHHHHHHHHHcCCCCCccCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAYRP   82 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g-~~~~v~~Ll~~ga~~~~~~~   82 (499)
                      +.+.+.++..|.||||+|+..|   +.+++++|+++|+++|.+|..|+||||+|+.. | +.+++++|+++|++++.+  
T Consensus        37 ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~-~~~~~iv~lLl~~ga~in~~--  113 (471)
T PHA03095         37 GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN-ATTLDVIKLLIKAGADVNAK--  113 (471)
T ss_pred             CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCcHHHHHHHHHcCCCCCCC--
Confidence            5778889999999999999998   99999999999999999999999999999998 6 699999999999999998  


Q ss_pred             CCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHcccccccccccccCCCHH
Q 010851           83 GGRGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFL  158 (499)
Q Consensus        83 d~~g~TpL~~A~--~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  158 (499)
                      |..|+||||+|+  ..++.+++++|+++|++++..|..|.||||+|+..+  +.+++++|+++|++++  ..|..|+|||
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~--~~d~~g~t~L  191 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY--AVDDRFRSLL  191 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc--ccCCCCCCHH
Confidence            889999999999  556889999999999999999999999999998876  6799999999999988  6688999999


Q ss_pred             HHHhhh--cCCHHHHHHHHhcCCCCCCCCcccccccCcccccc
Q 010851          159 EALAPQ--LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV  199 (499)
Q Consensus       159 h~~A~~--~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~  199 (499)
                      | +++.  .++.+++++|+++|++++.++..+.+++|++...+
T Consensus       192 h-~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        192 H-HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             H-HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            9 5554  46788898999999988888888888887766543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=269.61  Aligned_cols=219  Identities=20%  Similarity=0.156  Sum_probs=191.1

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCC-----------------------CCcccCCCCChHHHHHHHcCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-----------------------SLEWMDKEGKTPLIVACMDSG   62 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----------------------~~~~~d~~g~TpLh~Aa~~~g   62 (499)
                      .+++.+..+..|.||||+|+..|+.+++++|+++|+                       +++.+|..|.||||+|+.. |
T Consensus        57 ~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~-~  135 (434)
T PHA02874         57 HGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKK-G  135 (434)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHC-C
Confidence            356778889999999999999999999999988764                       5677889999999999997 9


Q ss_pred             cHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010851           63 LINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (499)
Q Consensus        63 ~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  142 (499)
                      +.+++++|+++|++++.+  |..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus       136 ~~~~v~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g  213 (434)
T PHA02874        136 DLESIKMLFEYGADVNIE--DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG  213 (434)
T ss_pred             CHHHHHHHHhCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            999999999999999998  889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCcccccc-ChHHHHHHHHhhcCCCccCCCC
Q 010851          143 CYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV-QPRAVIALWKAKIDEPKFHQPD  221 (499)
Q Consensus       143 ~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~  221 (499)
                      ++++  .++..|.|||| .|+..+. +++++|+ .|++.+.++..+.+++|++.+.. ....+..++.          .+
T Consensus       214 ~~i~--~~~~~g~TpL~-~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~----------~g  278 (434)
T PHA02874        214 NHIM--NKCKNGFTPLH-NAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLY----------HK  278 (434)
T ss_pred             CCCc--CCCCCCCCHHH-HHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHH----------Cc
Confidence            9998  88999999999 8887665 5666666 68999999999999999988654 3333333222          24


Q ss_pred             CceeeecCCCcchhHhHhhCC
Q 010851          222 PSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       222 ~~~~~~d~~g~tpl~~a~~~~  242 (499)
                      +++++.|..|+|||++|....
T Consensus       279 ad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        279 ADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHhC
Confidence            458999999999999999654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=251.15  Aligned_cols=164  Identities=16%  Similarity=0.103  Sum_probs=153.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCC-cHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG-TPLHHAA   94 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~-TpL~~A~   94 (499)
                      +|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  +..|+ ||||+|+
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~-g~~eivk~Ll~~gadin~~--~~~g~~TpL~~Aa  136 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAV  136 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcCcc--CCCCCcHHHHHHH
Confidence            478999999999999999999999999999999999999999998 9999999999999999988  67774 9999999


Q ss_pred             HcCCHHHHHHHHHCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCH-HHHHhhhcCCHHHHH
Q 010851           95 KRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQLMSRKIWV  172 (499)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~-Lh~~A~~~~~~~~~~  172 (499)
                      ..|+.++|++|++++.+.  .| ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|| || +|+..++.++++
T Consensus       137 ~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n--~~d~~g~t~~L~-~Aa~~~~~e~v~  211 (284)
T PHA02791        137 MLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDLEMLQ  211 (284)
T ss_pred             HcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC--cccCCCCChHHH-HHHHcCCHHHHH
Confidence            999999999999987653  23 358999999999999999999999999999  899999987 99 999999999999


Q ss_pred             HHHhcCCCCCCCCcc
Q 010851          173 VVIPCGTANPSKPLR  187 (499)
Q Consensus       173 ~Ll~~ga~~~~~~~~  187 (499)
                      +|+++|++++.++..
T Consensus       212 lLl~~Ga~in~~~~~  226 (284)
T PHA02791        212 ALFKYDINIYSVNLE  226 (284)
T ss_pred             HHHHCCCCCccCccc
Confidence            999999999999874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=273.85  Aligned_cols=217  Identities=17%  Similarity=0.175  Sum_probs=115.4

Q ss_pred             cCccccCCCchHHHHH-----HHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHH--HcCCcHHHHHHHHHcCCCCCcc
Q 010851            8 MNQHQQRQSKDELLYQ-----WVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVAC--MDSGLINVAKTLIELGANINAY   80 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~-----Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa--~~~g~~~~v~~Ll~~ga~~~~~   80 (499)
                      ++.+..+..|.||||+     |+..|+.+++++|+++|++++..|..|.||||+|+  .. |+.+++++|+++|++++..
T Consensus        59 ~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~-~~~~iv~~Ll~~g~~~~~~  137 (480)
T PHA03100         59 ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS-NSYSIVEYLLDNGANVNIK  137 (480)
T ss_pred             CCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhccc-ChHHHHHHHHHcCCCCCcc
Confidence            3444444555555555     55555555555555555555555555555555555  43 5555555555555555544


Q ss_pred             CCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccC----
Q 010851           81 RPGGRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG----  154 (499)
Q Consensus        81 ~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g----  154 (499)
                        +..|.||||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|    
T Consensus       138 --~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~~~~  213 (480)
T PHA03100        138 --NSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN--AGDIETLLFT  213 (480)
T ss_pred             --CCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc--CCCCCCCcHH
Confidence              445555555555555  5555555555555555555555555555555555555555555555554  444444    


Q ss_pred             --CCHHHHHhhhcCC--HHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCC
Q 010851          155 --PSFLEALAPQLMS--RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA  230 (499)
Q Consensus       155 --~t~Lh~~A~~~~~--~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~  230 (499)
                        .|||| .|+..++  .+++++|+++|++++.++..+.+++|.+........+..++.          .+++++..|..
T Consensus       214 ~~~t~l~-~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~----------~gad~n~~d~~  282 (480)
T PHA03100        214 IFETPLH-IAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD----------LGANPNLVNKY  282 (480)
T ss_pred             HHHhHHH-HHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----------cCCCCCccCCC
Confidence              45555 4555555  555555555555555555555555555554444333333221          23347777888


Q ss_pred             CcchhHhHhh
Q 010851          231 TKIRYKFASA  240 (499)
Q Consensus       231 g~tpl~~a~~  240 (499)
                      |.||+++|+.
T Consensus       283 g~tpl~~A~~  292 (480)
T PHA03100        283 GDTPLHIAIL  292 (480)
T ss_pred             CCcHHHHHHH
Confidence            8888888875

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=267.07  Aligned_cols=221  Identities=17%  Similarity=0.132  Sum_probs=193.3

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      .+++.+.++..|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+.. |+.+++++|++.|++++... +..
T Consensus        24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~-~~~  101 (413)
T PHA02875         24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE-GDVKAVEELLDLGKFADDVF-YKD  101 (413)
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC-CCHHHHHHHHHcCCcccccc-cCC
Confidence            3577888899999999999999999999999999999999999999999999997 99999999999998875432 668


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      |+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..
T Consensus       102 g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~-~A~~~  178 (413)
T PHA02875        102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLI-IAMAK  178 (413)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999998  89999999999 99999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCcccc-cccCccccccChHHHHHHHHhhcCCCccCCCCCc-eeeecCCCcchhHhHh
Q 010851          166 MSRKIWVVVIPCGTANPSKPLRFE-LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPS-LTIYDQATKIRYKFAS  239 (499)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~d~~g~tpl~~a~  239 (499)
                      ++.+++++|+++|++++..+..+. ++++++...+....+..++...        .++. ++..+..+.|+++++.
T Consensus       179 g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g--------ad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        179 GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG--------ADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC--------cCcchHhhcCCCchHHHHHHH
Confidence            999999999999999998887664 5666677777766666554332        2321 2234678899999876

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=5.4e-31  Score=263.78  Aligned_cols=209  Identities=25%  Similarity=0.252  Sum_probs=186.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHc
Q 010851           18 DELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~   96 (499)
                      ...++.|+++|.++.||.|++. |.+++..|.+|.|+||+||.+ |+.+++++|+++|+++|... ..-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN-Nrl~v~r~li~~gadvn~~g-G~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN-NRLDVARYLISHGADVNAIG-GVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc-CcHHHHHHHHHcCCCccccC-CCCCCCcchHHHHc
Confidence            5678999999999999999998 999999999999999999998 99999999999999999984 36789999999999


Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHh
Q 010851           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (499)
Q Consensus        97 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~  176 (499)
                      |+..+|.+|+++|||++.+|.+|.||||+|++.|+.-+|-+|+.+|++++  .+|.+|+|||| +|+.+++...+..|+.
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLm-wAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLM-WAAYKGFALFVRRLLK  199 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHH-HHHHhcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999  99999999999 9999998888999999


Q ss_pred             cCCCCCCCC-cccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhC
Q 010851          177 CGTANPSKP-LRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (499)
Q Consensus       177 ~ga~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~  241 (499)
                      -|+..+.++ .++.+++|++...++...+. +         ....+...+..|.+|+||+++|.+.
T Consensus       200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-L---------l~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVK-L---------LLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hcccccccccccCCchHHHHHhcCCcceEe-h---------hhhcCCcccccccCCCCHHHHHHHh
Confidence            999998877 67788888877666643332 1         1123455788899999999999874

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=268.19  Aligned_cols=210  Identities=15%  Similarity=0.073  Sum_probs=181.0

Q ss_pred             chHHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHH
Q 010851           17 KDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (499)
Q Consensus        17 g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~   94 (499)
                      +.++||.++.  .++.++|++|+++|+++|.+|.+|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~-g~~eiv~lLL~~GAdin~~--d~~g~TpLh~A~  113 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKI-NNNRIVAMLLTHGADPNAC--DKQHKTPLYYLS  113 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHH
Confidence            4699998774  4578999999999999999999999999999998 9999999999999999998  899999999999


Q ss_pred             HcCC--HHHHHHHHHCCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc--CCHH
Q 010851           95 KRGL--EPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL--MSRK  169 (499)
Q Consensus        95 ~~g~--~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~--~~~~  169 (499)
                      ..++  .+++++|+++|++++. .|..|.|||| |+..++.+++++|+++|++++  .+|..|+|||| +|+..  ++.+
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~--~~d~~G~t~Lh-~A~~~~~~~~~  189 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR--IVDKFGKNHIH-RHLMSDNPKAS  189 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc--ccCCCCCCHHH-HHHHhcCCCHH
Confidence            8764  7999999999999985 6899999997 677799999999999999999  99999999999 66554  4578


Q ss_pred             HHHHHHhcCCCCCCCCcccccccCccccccC--hHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCCCC
Q 010851          170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQ--PRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  244 (499)
Q Consensus       170 ~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~~~  244 (499)
                      ++++|+++|++++.++..+.+++|++.....  ...+..+.           .+..++.+|+.|+||||+|+.+...
T Consensus       190 ~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl-----------~gadin~~d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        190 TISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL-----------PSTDVNKQNKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHHhCCh
Confidence            9999999999999999999999999886542  22222111           1244899999999999999976553

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.7e-31  Score=265.94  Aligned_cols=186  Identities=25%  Similarity=0.214  Sum_probs=174.1

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      +...+..|.+|-|+|||||.+++++++++|+++|+++|... .-|.||||+|+++ |+..+|++|+++||+++.+  |..
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~-G~~~vv~lLlqhGAdpt~~--D~~  144 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN-GHISVVDLLLQHGADPTLK--DKQ  144 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc-CcHHHHHHHHHcCCCCcee--cCC
Confidence            56778889999999999999999999999999999999998 6789999999998 9999999999999999999  999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc-ccCCCHHHHHhhh
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQ  164 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~Lh~~A~~  164 (499)
                      |.||||+|+..|+.-+|-+||.+|+|++.+|.+|+||||+|+.+|+...++.|+..++.+.  .+| +.|.|||| +|+.
T Consensus       145 G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~--~~d~~~g~TpLH-wa~~  221 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL--LTDDNHGNTPLH-WAVV  221 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc--ccccccCCchHH-HHHh
Confidence            9999999999999999999999999999999999999999999999988999999999998  555 99999999 9999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCcccccccCccccc
Q 010851          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (499)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~  198 (499)
                      .|+.+++.+|++.|++.+.++.+|++++..+.+.
T Consensus       222 ~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  222 GGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999988888899888888888877776544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.3e-30  Score=271.79  Aligned_cols=217  Identities=21%  Similarity=0.205  Sum_probs=195.0

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHH-----HHHcCCcHHHHHHHHHcCCCCCccCCCC
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIV-----ACMDSGLINVAKTLIELGANINAYRPGG   84 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~-----Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~   84 (499)
                      .+..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+     |+.. ++.+++++|+++|++++..  |.
T Consensus        28 ~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~-~~~~iv~~Ll~~ga~i~~~--d~  104 (480)
T PHA03100         28 NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLT-DVKEIVKLLLEYGANVNAP--DN  104 (480)
T ss_pred             chhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh-chHHHHHHHHHCCCCCCCC--CC
Confidence            44568899999999999999999999999999999999999999999     9987 9999999999999999988  88


Q ss_pred             CCCcHHHHHH--HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHcccccccccccccCCCHHHH
Q 010851           85 RGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEA  160 (499)
Q Consensus        85 ~g~TpL~~A~--~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~  160 (499)
                      .|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++  .++..|.|||| 
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din--~~d~~g~tpL~-  181 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN--AKNRYGYTPLH-  181 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc--cccCCCCCHHH-
Confidence            9999999999  999999999999999999999999999999999999  9999999999999998  88999999999 


Q ss_pred             HhhhcCCHHHHHHHHhcCCCCCCCCccc------ccccCccccccC--hHHHHHHHHhhcCCCccCCCCCceeeecCCCc
Q 010851          161 LAPQLMSRKIWVVVIPCGTANPSKPLRF------ELVIYPSLQDVQ--PRAVIALWKAKIDEPKFHQPDPSLTIYDQATK  232 (499)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~------~~~l~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~  232 (499)
                      +|+..++.+++++|+++|++.+..+..+      .++++.+.....  ...+..++.          .+..++..|..|.
T Consensus       182 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~----------~g~din~~d~~g~  251 (480)
T PHA03100        182 IAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS----------YGVPINIKDVYGF  251 (480)
T ss_pred             HHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH----------cCCCCCCCCCCCC
Confidence            9999999999999999999999887766      666666665555  444443332          2344888999999


Q ss_pred             chhHhHhhCC
Q 010851          233 IRYKFASANE  242 (499)
Q Consensus       233 tpl~~a~~~~  242 (499)
                      ||||+|+...
T Consensus       252 TpL~~A~~~~  261 (480)
T PHA03100        252 TPLHYAVYNN  261 (480)
T ss_pred             CHHHHHHHcC
Confidence            9999999643

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.4e-30  Score=278.43  Aligned_cols=231  Identities=16%  Similarity=0.108  Sum_probs=154.2

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHH---------------
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTL---------------   70 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~L---------------   70 (499)
                      .++++|.+|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|               
T Consensus       167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~-~~~~ivk~Ll~~~~~~~~~~~~L~  245 (682)
T PHA02876        167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS-KNIDTIKAIIDNRSNINKNDLSLL  245 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCCCCCcHHHH
Confidence            3678888999999999999999999999999999999888777777777777765 555554443               


Q ss_pred             --------------HHcCCCCCccCCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCCCcccCCCCCCHHHHHHHcC-CHHH
Q 010851           71 --------------IELGANINAYRPGGRGGTPLHHAAKRGLE-PTVRLLLSCGANALVRNDDCHTALGVARIKG-HINV  134 (499)
Q Consensus        71 --------------l~~ga~~~~~~~d~~g~TpL~~A~~~g~~-~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g-~~~~  134 (499)
                                    ++.|++++..  |..|+||||+|+..++. +++++|++.|++++.+|..|.||||+|+..| +.++
T Consensus       246 ~ai~~~~~~~~~~Ll~~g~~vn~~--d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~  323 (682)
T PHA02876        246 KAIRNEDLETSLLLYDAGFSVNSI--DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTEN  323 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHH
Confidence                          3344455555  56677777777777665 4667777777777777777777777777666 3666


Q ss_pred             HHHHHHcccccccccccccCCCHHHHHhhh-cCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcC
Q 010851          135 VRAIESHICYFCGWLREFYGPSFLEALAPQ-LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKID  213 (499)
Q Consensus       135 v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~-~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  213 (499)
                      +++|+..|++++  .+|..|+|||| +|+. .++.+++++|+++|++++.++..+.+++|++...+....+..++.....
T Consensus       324 v~~Ll~~gadin--~~d~~g~TpLh-~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad  400 (682)
T PHA02876        324 IRTLIMLGADVN--AADRLYITPLH-QASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD  400 (682)
T ss_pred             HHHHHHcCCCCC--CcccCCCcHHH-HHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            666666666666  56666666666 4433 3455666666666666666666666666665554444433333211000


Q ss_pred             -----------------------CCc-cCCCCCceeeecCCCcchhHhHhhCC
Q 010851          214 -----------------------EPK-FHQPDPSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       214 -----------------------~~~-~~~~~~~~~~~d~~g~tpl~~a~~~~  242 (499)
                                             ..+ +...+..++.+|..|+||||+|+...
T Consensus       401 ~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        401 IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence                                   001 11134558899999999999999644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.5e-30  Score=236.66  Aligned_cols=162  Identities=17%  Similarity=0.192  Sum_probs=145.4

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcC-CcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~-g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      .+.+.||||+|+..|+.++|+.|++.   ++..|..|.||||+|+..+ ++.+++++|+++|+++|.++ +..|+||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~-~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT-RDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC-CCCCCCHHHH
Confidence            45678999999999999999999985   5678899999999999852 48999999999999999882 2589999999


Q ss_pred             HHHc---CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHH--cCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCC
Q 010851           93 AAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARI--KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (499)
Q Consensus        93 A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~  167 (499)
                      |+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++  .+|..|.||||.+++..++
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCCcHHHHHHHhcCC
Confidence            8864   47999999999999999999999999999986  468999999999999999  8999999999955677889


Q ss_pred             HHHHHHHHhcCCCC
Q 010851          168 RKIWVVVIPCGTAN  181 (499)
Q Consensus       168 ~~~~~~Ll~~ga~~  181 (499)
                      .+++++|+++|+++
T Consensus       172 ~~iv~~Ll~~Gadi  185 (209)
T PHA02859        172 KKIFDFLTSLGIDI  185 (209)
T ss_pred             HHHHHHHHHcCCCC
Confidence            99999999999874

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=259.93  Aligned_cols=209  Identities=18%  Similarity=0.091  Sum_probs=189.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHc
Q 010851           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~   96 (499)
                      .+++||.|+..|+.+++++|+++|++++.++..|.||||+|+.. |+.+++++|+++|++++..  +..+.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKF-RDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHC
Confidence            57899999999999999999999999999999999999999998 9999999999999999987  77899999999999


Q ss_pred             CCHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHH
Q 010851           97 GLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (499)
Q Consensus        97 g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll  175 (499)
                      |+.++|++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++.+++++|+
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh-~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLH-LAVMMGDIKGIELLI  155 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence            99999999999998763 456789999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCC-cchhHhHhhC
Q 010851          176 PCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT-KIRYKFASAN  241 (499)
Q Consensus       176 ~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g-~tpl~~a~~~  241 (499)
                      ++|++.+.++..+.++++++...+....+..++..          ++.++..+..| .|++++|+..
T Consensus       156 ~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~----------ga~~n~~~~~~~~t~l~~A~~~  212 (413)
T PHA02875        156 DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS----------GANIDYFGKNGCVAALCYAIEN  212 (413)
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----------CCCCCcCCCCCCchHHHHHHHc
Confidence            99999999999999999999988887666554432          33466677776 4788988853

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.4e-30  Score=267.57  Aligned_cols=229  Identities=16%  Similarity=0.169  Sum_probs=184.5

Q ss_pred             cccCccccCCCchHHHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcC-----CcHHHHHHHHHcCCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIA--GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-----GLINVAKTLIELGANIN   78 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~--g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~-----g~~~~v~~Ll~~ga~~~   78 (499)
                      .|+++|.+ .+|.|+||+++..  ++.++|++||++|+++|.++ .+.||||.|+.++     ++.+++++|+++|+++|
T Consensus        25 ~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin  102 (494)
T PHA02989         25 TGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADIN  102 (494)
T ss_pred             cCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCC
Confidence            36778877 5789998776654  37899999999999999886 5799999998641     35789999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHc--CCHHHHHHHHHccccccccc-cc
Q 010851           79 AYRPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANA-LVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWL-RE  151 (499)
Q Consensus        79 ~~~~d~~g~TpL~~A~~~---g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~g~~~~~~~-~~  151 (499)
                      .+  |..|.||||.|+..   ++.+++++|+++|+|+ +.+|..|+||||+|+..  ++.++|++|+++|++++  . .+
T Consensus       103 ~~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~--~~~~  178 (494)
T PHA02989        103 LK--TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF--EKTS  178 (494)
T ss_pred             CC--CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccc
Confidence            99  88999999998765   6789999999999999 89999999999998764  68999999999999998  5 68


Q ss_pred             ccCCCHHHHHhhhc----CCHHHHHHHHhcCCCCCCCCcccccccCc-------------------------cccccChH
Q 010851          152 FYGPSFLEALAPQL----MSRKIWVVVIPCGTANPSKPLRFELVIYP-------------------------SLQDVQPR  202 (499)
Q Consensus       152 ~~g~t~Lh~~A~~~----~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~-------------------------~~~~~~~~  202 (499)
                      ..|.|||| +|...    ++.+++++|+++|++++..+..+.++++.                         ..++..+.
T Consensus       179 ~~g~tpL~-~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~  257 (494)
T PHA02989        179 LYGLTPMN-IYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGF  257 (494)
T ss_pred             ccCCChHH-HHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCC
Confidence            89999999 66554    58999999999999999888655555532                         34455677


Q ss_pred             HHHHHHH--hhcCCCccCC-CCCceeeecCCCcchhHhHhhC
Q 010851          203 AVIALWK--AKIDEPKFHQ-PDPSLTIYDQATKIRYKFASAN  241 (499)
Q Consensus       203 ~~~~l~~--~~~~~~~~~~-~~~~~~~~d~~g~tpl~~a~~~  241 (499)
                      |+++++.  .+.+..++.. .+++++.+|+.|+|||++|+.+
T Consensus       258 TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        258 NPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             CHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            7777762  2222222222 4555888888888888888864

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.9e-29  Score=272.75  Aligned_cols=227  Identities=18%  Similarity=0.118  Sum_probs=196.8

Q ss_pred             ccCccccCCCchHHHHHHHHcCCH-HHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDV-DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~-~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      +++.+.+|..|.||||+|+..|+. +++++|+++|++++.+|..|.||||+|+..+...+++++|+..|++++.+  |..
T Consensus       263 g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~--d~~  340 (682)
T PHA02876        263 GFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA--DRL  340 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc--ccC
Confidence            456788899999999999999997 69999999999999999999999999999833699999999999999998  889


Q ss_pred             CCcHHHHHHHc-CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhh
Q 010851           86 GGTPLHHAAKR-GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (499)
Q Consensus        86 g~TpL~~A~~~-g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~  164 (499)
                      |+||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+.
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~Lh-~A~~  417 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTALH-FALC  417 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchHH-HHHH
Confidence            99999999986 57899999999999999999999999999999999999999999999999  88999999999 6655


Q ss_pred             -cCCHHHHHHHHhcCCCCCCCCcccccccCccccccC-hHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCC
Q 010851          165 -LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ-PRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       165 -~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~  242 (499)
                       .+...++++|+++|++++.++..|.++++++..... ...+..|..          .+.+++..|..|.||+++|+...
T Consensus       418 ~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~----------~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        418 GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD----------NGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH----------CCCCCCCCCCCCCCHHHHHHHhC
Confidence             455678999999999999999999999999987553 233332222          24458999999999999999754


Q ss_pred             CCHHHHH
Q 010851          243 GDKHQLQ  249 (499)
Q Consensus       243 ~~~~~l~  249 (499)
                      . ...+.
T Consensus       488 ~-~v~~L  493 (682)
T PHA02876        488 G-IVNIL  493 (682)
T ss_pred             C-HHHHH
Confidence            3 34433

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.4e-29  Score=261.23  Aligned_cols=185  Identities=21%  Similarity=0.233  Sum_probs=169.6

Q ss_pred             cccCccccCCCchHHHHHHHHcCCH-------------------------------------------------------
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDV-------------------------------------------------------   30 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~-------------------------------------------------------   30 (499)
                      .+++.|.+|.+|.||||+|+..|+.                                                       
T Consensus        59 ~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~  138 (477)
T PHA02878         59 RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDK  138 (477)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhh
Confidence            3578889999999999999987543                                                       


Q ss_pred             ---------HHHHHHHHcCCCCcccCCC-CChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHH
Q 010851           31 ---------DAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP  100 (499)
Q Consensus        31 ---------~~v~~Ll~~g~~~~~~d~~-g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~  100 (499)
                               +++++|+++|++++.+|.. |.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+
T Consensus       139 ~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~-~~~~iv~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~  215 (477)
T PHA02878        139 KSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATEN-KDQRLTELLLSYGANVNIP--DKTNNSPLHHAVKHYNKP  215 (477)
T ss_pred             ccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhC-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCHH
Confidence                     2677788889999999988 99999999998 9999999999999999998  889999999999999999


Q ss_pred             HHHHHHHCCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcccccccccccc-cCCCHHHHHhhhcCCHHHHHHHHhcC
Q 010851          101 TVRLLLSCGANALVRNDDCHTALGVARIK-GHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCG  178 (499)
Q Consensus       101 ~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~-~g~t~Lh~~A~~~~~~~~~~~Ll~~g  178 (499)
                      ++++|++.|++++.+|..|.||||+|+.. ++.+++++|+++|++++  .++. .|.|||| +|  .++.+++++|+++|
T Consensus       216 iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn--~~~~~~g~TpLh-~A--~~~~~~v~~Ll~~g  290 (477)
T PHA02878        216 IVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN--AKSYILGLTALH-SS--IKSERKLKLLLEYG  290 (477)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC--ccCCCCCCCHHH-HH--ccCHHHHHHHHHCC
Confidence            99999999999999999999999999976 78999999999999999  6665 7999999 77  57789999999999


Q ss_pred             CCCCCCCcccccccCccccc
Q 010851          179 TANPSKPLRFELVIYPSLQD  198 (499)
Q Consensus       179 a~~~~~~~~~~~~l~~~~~~  198 (499)
                      ++++..+..+.++++.+...
T Consensus       291 adin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        291 ADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHH
Confidence            99999999999999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=256.65  Aligned_cols=223  Identities=17%  Similarity=0.149  Sum_probs=161.1

Q ss_pred             CCchHHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHc----CCcHHHHHHHHHcCCCCCccCCCCCCCc
Q 010851           15 QSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD----SGLINVAKTLIELGANINAYRPGGRGGT   88 (499)
Q Consensus        15 ~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~----~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   88 (499)
                      ..|.|+++.+..  .++.++|++|+++|+++|.+|..|.||||+|+.+    .++.+++++|+++|+++|.+  |..|+|
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~--d~~G~T  111 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKK--NSDGET  111 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCC--CCCcCc
Confidence            345666664443  3478888888888888888888888888887642    14578888888888888887  778888


Q ss_pred             HHHHHHHcC---CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCC---HHHHHHHHHcccccccccc-cccCCCHHHHH
Q 010851           89 PLHHAAKRG---LEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHICYFCGWLR-EFYGPSFLEAL  161 (499)
Q Consensus        89 pL~~A~~~g---~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~-~~~g~t~Lh~~  161 (499)
                      |||+|+..+   +.+++++|+++|++++.+|..|.||||+|+..++   .+++++|+++|++++  .+ +..|.|||| .
T Consensus       112 pLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin--~~~~~~~~t~Lh-~  188 (489)
T PHA02798        112 PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN--THNNKEKYDTLH-C  188 (489)
T ss_pred             HHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc--cccCcCCCcHHH-H
Confidence            888888775   6788888888888888888888888888888877   888888888888887  55 456788888 5


Q ss_pred             hhh----cCCHHHHHHHHhcCCCCCCCCcccccccC--------------------------ccccccChHHHHHHHH--
Q 010851          162 APQ----LMSRKIWVVVIPCGTANPSKPLRFELVIY--------------------------PSLQDVQPRAVIALWK--  209 (499)
Q Consensus       162 A~~----~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~--------------------------~~~~~~~~~~~~~l~~--  209 (499)
                      +..    .++.+++++|+++|++++..+..+.++++                          ...++..+.|+++++.  
T Consensus       189 ~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~  268 (489)
T PHA02798        189 YFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH  268 (489)
T ss_pred             HHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc
Confidence            543    34688888888888877765544433322                          2234556677777662  


Q ss_pred             hhcCCCccCC-CCCceeeecCCCcchhHhHhhCC
Q 010851          210 AKIDEPKFHQ-PDPSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       210 ~~~~~~~~~~-~~~~~~~~d~~g~tpl~~a~~~~  242 (499)
                      .+.+...+.. .++++++.|..|+|||++|+.+.
T Consensus       269 ~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        269 NNRKIFEYLLQLGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             CcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcC
Confidence            1222222222 45569999999999999999643

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.5e-27  Score=248.22  Aligned_cols=222  Identities=19%  Similarity=0.179  Sum_probs=199.5

Q ss_pred             cccCccccCCCchHHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCChHHHHHHHc-CCcHHHHHHHHHcCCCCCccCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPG   83 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~-~g~~~~v~~Ll~~ga~~~~~~~d   83 (499)
                      .+++.|.+|..|.||||+|+..| +.+++++|+++|++++.+|..|+||||+|+.. .++.+++++|+++|++++.+  |
T Consensus        72 ~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~--d  149 (471)
T PHA03095         72 AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL--D  149 (471)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc--C
Confidence            36788899999999999999999 59999999999999999999999999999942 26789999999999999998  8


Q ss_pred             CCCCcHHHHHHHcC--CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHHcccccccccccccCCCHHH
Q 010851           84 GRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWLREFYGPSFLE  159 (499)
Q Consensus        84 ~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh  159 (499)
                      ..|.||||+|+..+  +.+++++|+++|++++..|..|.||||+|+..  ++.+++++|+++|++++  .+|..|+||||
T Consensus       150 ~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--~~d~~g~tpLh  227 (471)
T PHA03095        150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA--ATDMLGNTPLH  227 (471)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--ccCCCCCCHHH
Confidence            89999999999876  68999999999999999999999999999875  78899999999999999  99999999999


Q ss_pred             HHhhhcCCH--HHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHh
Q 010851          160 ALAPQLMSR--KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKF  237 (499)
Q Consensus       160 ~~A~~~~~~--~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~  237 (499)
                       +|+..++.  .+++.|++.|++++.++..+.+++|++...+....+..|+..          ++++++.|..|+|||++
T Consensus       228 -~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~----------gad~n~~~~~g~tpl~~  296 (471)
T PHA03095        228 -SMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIAL----------GADINAVSSDGNTPLSL  296 (471)
T ss_pred             -HHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----------CCCCcccCCCCCCHHHH
Confidence             88888764  688899999999999999999999999988887776665532          34488999999999999


Q ss_pred             HhhCC
Q 010851          238 ASANE  242 (499)
Q Consensus       238 a~~~~  242 (499)
                      |+.+.
T Consensus       297 A~~~~  301 (471)
T PHA03095        297 MVRNN  301 (471)
T ss_pred             HHHhC
Confidence            99633

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=7.3e-28  Score=245.57  Aligned_cols=226  Identities=19%  Similarity=0.145  Sum_probs=166.9

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +++.+..|..+.+|||+|+..|+.++++.|+++|+|+|..|..|.||||+||.. ++.|..+.|++.|+++...  |.+|
T Consensus       111 gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~-~~~E~~k~Li~~~a~~~K~--~~~~  187 (929)
T KOG0510|consen  111 GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARK-NKVEAKKELINKGADPCKS--DIDG  187 (929)
T ss_pred             CCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhc-ChHHHHHHHHhcCCCCCcc--cCcC
Confidence            345556677777777777777777777777777777777777777777777776 7777777777777777766  6777


Q ss_pred             CcHHHHHHHcCCHHHHHHHHH-----CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccccccc-------------c
Q 010851           87 GTPLHHAAKRGLEPTVRLLLS-----CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG-------------W  148 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~-----~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~-------------~  148 (499)
                      .+|+|.|++.|..++.+..+.     .+..++..|..|.||||.|+..|+.++++.+++.|..+..             +
T Consensus       188 ~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~  267 (929)
T KOG0510|consen  188 NFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVN  267 (929)
T ss_pred             CchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhh
Confidence            777777777777777777776     4566777777788888888888888888888877653321             2


Q ss_pred             cccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeec
Q 010851          149 LREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYD  228 (499)
Q Consensus       149 ~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d  228 (499)
                      ..|.+|.|||| +|+..|+.+.++.|+..|++++.++...++++|.++..+..+++..|+++.-        ...++..|
T Consensus       268 ~~d~dg~tpLH-~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~--------~rllne~D  338 (929)
T KOG0510|consen  268 DEDNDGCTPLH-YAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESD--------TRLLNESD  338 (929)
T ss_pred             cccccCCchHH-HHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcC--------cccccccc
Confidence            45678888888 8888888888888888888888888888888888888888888887776211        12256667


Q ss_pred             CCCcchhHhHhhCCCC
Q 010851          229 QATKIRYKFASANEGD  244 (499)
Q Consensus       229 ~~g~tpl~~a~~~~~~  244 (499)
                      -.|.||||+|+.+.++
T Consensus       339 ~~g~tpLHlaa~~gH~  354 (929)
T KOG0510|consen  339 LHGMTPLHLAAKSGHD  354 (929)
T ss_pred             ccCCCchhhhhhcCHH
Confidence            7788888888854443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.7e-27  Score=242.98  Aligned_cols=236  Identities=16%  Similarity=0.067  Sum_probs=201.8

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHH-----cCCCCCccC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE-----LGANINAYR   81 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~-----~ga~~~~~~   81 (499)
                      +.++|..|+.|.||||.|+..++.|..+.|++.|+++-..|.+|++|+|.|++. |..|+.++.+.     .+..+|.. 
T Consensus       144 ~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s-~s~e~mEi~l~~~g~~r~~~in~~-  221 (929)
T KOG0510|consen  144 GADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARS-GSKECMEIFLPEHGYERQTHINFD-  221 (929)
T ss_pred             cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHh-cchhhhhhhhccccchhhcccccc-
Confidence            478899999999999999999999988999999999999999999999999998 99999999998     67889988 


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 010851           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGAN---------------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (499)
Q Consensus        82 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~---------------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  146 (499)
                       +..|.||||.|+..|++++++.+|+.|+.               ++..|++|.||||+|++.|+.+.|+.|+..|++++
T Consensus       222 -~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~  300 (929)
T KOG0510|consen  222 -NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN  300 (929)
T ss_pred             -cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc
Confidence             88999999999999999999999998753               34568999999999999999999999999999999


Q ss_pred             cccccccCCCHHHHHhhhcCCHHHHHHHHh-cC-CCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCce
Q 010851          147 GWLREFYGPSFLEALAPQLMSRKIWVVVIP-CG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSL  224 (499)
Q Consensus       147 ~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~-~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  224 (499)
                        .++.++.|||| .|+..|+.+.++-||+ .| ...+..+..+.+++|.+.+.+..+.+..|++.......       .
T Consensus       301 --~kn~d~~spLH-~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~-------~  370 (929)
T KOG0510|consen  301 --SKNKDEESPLH-FAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLN-------M  370 (929)
T ss_pred             --ccCCCCCCchH-HHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhc-------c
Confidence              99999999999 9999999999999998 33 34567788999999999988888888777643321111       0


Q ss_pred             eeecCCCcchhHhHh-hCCCCHHHHHHHHHHh
Q 010851          225 TIYDQATKIRYKFAS-ANEGDKHQLQWLDNAC  255 (499)
Q Consensus       225 ~~~d~~g~tpl~~a~-~~~~~~~~l~~~~~~c  255 (499)
                      .-.|.+|.|+||+|+ ..+...++.+..+++-
T Consensus       371 ~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~  402 (929)
T KOG0510|consen  371 SEADSDGNTALHLAAKYGNTSAVQKLISHGAD  402 (929)
T ss_pred             cccccCCchhhhHHHHhccHHHHHHHHHcCCc
Confidence            133999999999999 4444555555555443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=3.9e-27  Score=250.30  Aligned_cols=197  Identities=16%  Similarity=0.096  Sum_probs=167.1

Q ss_pred             HcCCHHHHHHHHHcC-CCCccc-CCCCChHHHHHHHc-CCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCC--HH
Q 010851           26 IAGDVDAIRALRSQG-ASLEWM-DKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL--EP  100 (499)
Q Consensus        26 ~~g~~~~v~~Ll~~g-~~~~~~-d~~g~TpLh~Aa~~-~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~--~~  100 (499)
                      +.++.++|++|+++| +++|.+ |..|.||||+|+.. .++.+++++|+++|+++|.+  |..|.||||+|+..|+  .+
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k--D~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ--NNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCCCHH
Confidence            468999999999999 999998 89999999998743 25789999999999999998  8899999999999995  59


Q ss_pred             HHHHHHHCCCCCcccCCCCCCHHHHH-------------------------------------HHcCCHHHHHHHHHccc
Q 010851          101 TVRLLLSCGANALVRNDDCHTALGVA-------------------------------------RIKGHINVVRAIESHIC  143 (499)
Q Consensus       101 ~v~~Ll~~ga~~~~~d~~g~tpL~~A-------------------------------------~~~g~~~~v~~Ll~~g~  143 (499)
                      +|++|+++|++++.+|..|+||||+|                                     +..|+.+++++|+++|+
T Consensus       229 IVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA  308 (764)
T PHA02716        229 VIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV  308 (764)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC
Confidence            99999999999999999999999975                                     34578899999999999


Q ss_pred             ccccccccccCCCHHHHHhh--hcCCHHHHHHHHhcCCCCCCCCcccccccCccccc--------------cChHHHHHH
Q 010851          144 YFCGWLREFYGPSFLEALAP--QLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD--------------VQPRAVIAL  207 (499)
Q Consensus       144 ~~~~~~~~~~g~t~Lh~~A~--~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~l  207 (499)
                      +++  .+|..|+|||| +|+  ..++.+++++|+++|++++.++..+.+++|++...              .....+..|
T Consensus       309 dIN--~kD~~G~TPLH-~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklL  385 (764)
T PHA02716        309 KLH--YKDSAGRTCLH-QYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCL  385 (764)
T ss_pred             cee--ccCCCCCCHHH-HHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHH
Confidence            999  89999999999 554  35689999999999999999999999999875431              111112111


Q ss_pred             HHhhcCCCccCCCCCceeeecCCCcchhHh
Q 010851          208 WKAKIDEPKFHQPDPSLTIYDQATKIRYKF  237 (499)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~  237 (499)
                      +        .  .+.+++.+|..|+||||.
T Consensus       386 L--------~--~GADIn~kn~~G~TPLh~  405 (764)
T PHA02716        386 I--------S--LGADITAVNCLGYTPLTS  405 (764)
T ss_pred             H--------H--CCCCCCCcCCCCCChHHH
Confidence            1        1  345588999999999994

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.5e-27  Score=244.86  Aligned_cols=199  Identities=13%  Similarity=0.120  Sum_probs=145.8

Q ss_pred             ccCccccCCCchHHHHHHHH------cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcC--CcHHHHHHHHHcCCCC-
Q 010851            7 SMNQHQQRQSKDELLYQWVI------AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANI-   77 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~------~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~--g~~~~v~~Ll~~ga~~-   77 (499)
                      |+++|.++ .+.||||.|+.      .|+.++|++|+++|+++|.+|..|.||||.|+..+  |+.+++++|+++|+++ 
T Consensus        60 GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin  138 (494)
T PHA02989         60 GADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN  138 (494)
T ss_pred             CCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc
Confidence            45555554 45777777654      36677777777777777777777777777665431  4567777777777777 


Q ss_pred             CccCCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCCcc-cCCCCCCHHHHHHHcC----CHHHHHHHHHccccccc---
Q 010851           78 NAYRPGGRGGTPLHHAAKR--GLEPTVRLLLSCGANALV-RNDDCHTALGVARIKG----HINVVRAIESHICYFCG---  147 (499)
Q Consensus        78 ~~~~~d~~g~TpL~~A~~~--g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~g----~~~~v~~Ll~~g~~~~~---  147 (499)
                      +.+  |..|+||||+|+..  ++.++|++|+++|++++. .+..|.||||+|+..+    +.+++++|+++|++++.   
T Consensus       139 ~~~--d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        139 DVK--NSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN  216 (494)
T ss_pred             ccc--CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence            555  66777777776643  466777777777777766 4667777777776543    66777777777765541   


Q ss_pred             ---------------------------------ccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCc
Q 010851          148 ---------------------------------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYP  194 (499)
Q Consensus       148 ---------------------------------~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~  194 (499)
                                                       +.+|..|+|||| +|+..++.+++++|+++|++++.++..+.+++++
T Consensus       217 ~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~-~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~  295 (494)
T PHA02989        217 GSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLL-ISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTY  295 (494)
T ss_pred             ccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHH-HHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence                                             156777999999 9999999999999999999999999999999999


Q ss_pred             cccccChHHHHHHHH
Q 010851          195 SLQDVQPRAVIALWK  209 (499)
Q Consensus       195 ~~~~~~~~~~~~l~~  209 (499)
                      +........+..++.
T Consensus       296 A~~~~~~~iv~~LL~  310 (494)
T PHA02989        296 AIKHGNIDMLNRILQ  310 (494)
T ss_pred             HHHcCCHHHHHHHHh
Confidence            998888776665553

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=215.09  Aligned_cols=151  Identities=15%  Similarity=0.115  Sum_probs=137.0

Q ss_pred             ccccCCCchHHHHHHHHcC--CHHHHHHHHHcCCCCcccC-CCCChHHHHHHHc--CCcHHHHHHHHHcCCCCCccCCCC
Q 010851           10 QHQQRQSKDELLYQWVIAG--DVDAIRALRSQGASLEWMD-KEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGG   84 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g--~~~~v~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~~~~~~d~   84 (499)
                      .+..|..|.||||+|+..+  +.+++++|+++|+++|.++ ..|+||||+|+..  .++.+++++|+++|+++|.+  |.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~--d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEE--DE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc--CC
Confidence            5668899999999999854  8999999999999999997 4899999998864  14789999999999999998  88


Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHHHCCCCCcccCCCCCCHHHH-HHHcCCHHHHHHHHHcccccccccccccCCCHHHHH
Q 010851           85 RGGTPLHHAAK--RGLEPTVRLLLSCGANALVRNDDCHTALGV-ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL  161 (499)
Q Consensus        85 ~g~TpL~~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~  161 (499)
                      .|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++  .+|..|+|||| +
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~--~~d~~g~tpl~-l  198 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN--ETNKSGYNCYD-L  198 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-H
Confidence            99999999986  468999999999999999999999999996 567889999999999999999  99999999999 7


Q ss_pred             hhhc
Q 010851          162 APQL  165 (499)
Q Consensus       162 A~~~  165 (499)
                      |...
T Consensus       199 a~~~  202 (209)
T PHA02859        199 IKFR  202 (209)
T ss_pred             Hhhh
Confidence            7654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.6e-26  Score=230.54  Aligned_cols=169  Identities=14%  Similarity=0.027  Sum_probs=152.1

Q ss_pred             ccCCCchHHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCcc-CC---CCC
Q 010851           12 QQRQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RP---GGR   85 (499)
Q Consensus        12 ~~d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~-~~---d~~   85 (499)
                      .++..++|+||+++.  .|+.++|++|+++|++++..  ++.||||+|+.+ |+.+++++|+.+|++.+.. +.   +..
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~-~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK-KESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc-CcHHHHHHHHhcCCcccccccchhhhhh
Confidence            678889999999999  99999999999999999884  558999999987 9999999999999854322 10   134


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      |.|++|.|...++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh-~Aa~~  264 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLD-VAVDR  264 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHc
Confidence            7899999999999999999999999999999999999999999999999999999999999  99999999999 88887


Q ss_pred             C--------CHHHHHHHHhcCCCCCCCCc
Q 010851          166 M--------SRKIWVVVIPCGTANPSKPL  186 (499)
Q Consensus       166 ~--------~~~~~~~Ll~~ga~~~~~~~  186 (499)
                      |        +.+++++|+++|++.+....
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCCCchhH
Confidence            7        46999999999998876553

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=9.6e-27  Score=248.66  Aligned_cols=219  Identities=16%  Similarity=0.122  Sum_probs=175.9

Q ss_pred             cccCccccCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcH----HHHHHHHHcCCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI----NVAKTLIELGANIN   78 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~----~~v~~Ll~~ga~~~   78 (499)
                      ++...+.+|.+|+||||+|+..   |+.++|++||++|++++.+|..|+||||+|+.. |+.    +++++|++.+...|
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~-g~~~v~~~~~~~Ll~~~~~~n   99 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS-RHVKVNKDIAMALLEATGYSN   99 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CChhHHHHHHHHHHhccCCCC
Confidence            4556677899999999998655   889999999999999999999999999999997 774    56788988765555


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH--HcCCHHHHHHHHHcccccccccccc---c
Q 010851           79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRAIESHICYFCGWLREF---Y  153 (499)
Q Consensus        79 ~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~---~  153 (499)
                      ..  +  ..+++|+|+.+++.++|++|+++|+|++.+|..|+||||+|+  ..|+.++|++|+++|++++  .+|.   .
T Consensus       100 ~~--~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn--~~d~~~~~  173 (661)
T PHA02917        100 IN--D--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL--YEDEDDEY  173 (661)
T ss_pred             CC--C--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc--cccccccc
Confidence            54  3  237788899999999999999999999999999999999654  5789999999999999997  4443   3


Q ss_pred             C-----------CCHHHHHhhh-----------cCCHHHHHHHHhcCCCCCCCCcccccccCccccccChH--HHHHHHH
Q 010851          154 G-----------PSFLEALAPQ-----------LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR--AVIALWK  209 (499)
Q Consensus       154 g-----------~t~Lh~~A~~-----------~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~--~~~~l~~  209 (499)
                      |           .|||| +|+.           .++.+++++|+++|++++.++..+.+++|++...+...  .+..|.+
T Consensus       174 g~~~~~~~~~~~~t~L~-~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        174 GYAYDDYQPRNCGTVLH-LYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             ccccccccccccccHHH-HHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence            4           59999 6654           46899999999999999999999999999999877643  3333221


Q ss_pred             hhcCCCccCCCCCceeeecCCCcchhHhHh
Q 010851          210 AKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (499)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~  239 (499)
                       ....      +...++.|..|.++++++.
T Consensus       253 -g~d~------~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        253 -GIDN------TAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             -CCcc------cccccccCcccccchHHHH
Confidence             1100      1113456777788888887

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.2e-26  Score=241.40  Aligned_cols=200  Identities=15%  Similarity=0.108  Sum_probs=178.7

Q ss_pred             cccCccccCCCchHHHHHHHHc-----CCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcC--CcHHHHHHHHHcCCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIA-----GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANIN   78 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~-----g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~--g~~~~v~~Ll~~ga~~~   78 (499)
                      .|+++|.+|..|.||||+|+.+     +..+++++|+++|+++|.+|..|+||||+|+..+  ++.+++++|+++|++++
T Consensus        60 ~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn  139 (489)
T PHA02798         60 LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT  139 (489)
T ss_pred             CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc
Confidence            4788999999999999999864     7899999999999999999999999999999862  37899999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCcccC-CCCCCHHHHHHHc----CCHHHHHHHHHccccccc---
Q 010851           79 AYRPGGRGGTPLHHAAKRGL---EPTVRLLLSCGANALVRN-DDCHTALGVARIK----GHINVVRAIESHICYFCG---  147 (499)
Q Consensus        79 ~~~~d~~g~TpL~~A~~~g~---~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~----g~~~~v~~Ll~~g~~~~~---  147 (499)
                      .+  |..|.||||+|+..++   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++|++++.   
T Consensus       140 ~~--d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        140 LL--DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             cc--CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence            98  8999999999999998   999999999999999885 5799999998764    478999999998875541   


Q ss_pred             ----------------------------------ccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccC
Q 010851          148 ----------------------------------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  193 (499)
Q Consensus       148 ----------------------------------~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~  193 (499)
                                                        +.+|..|+|||| +|+..++.+++++|+++|++++..+..|+++++
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~-~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~  296 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLY-YSVSHNNRKIFEYLLQLGGDINIITELGNTCLF  296 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHH-HHHHcCcHHHHHHHHHcCCcccccCCCCCcHHH
Confidence                                              146778999999 999999999999999999999999999999999


Q ss_pred             ccccccChHHHHHHH
Q 010851          194 PSLQDVQPRAVIALW  208 (499)
Q Consensus       194 ~~~~~~~~~~~~~l~  208 (499)
                      .+........+..++
T Consensus       297 ~A~~~~~~~iv~~lL  311 (489)
T PHA02798        297 TAFENESKFIFNSIL  311 (489)
T ss_pred             HHHHcCcHHHHHHHH
Confidence            999888776666554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-27  Score=227.58  Aligned_cols=188  Identities=23%  Similarity=0.225  Sum_probs=129.9

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHH-cCCCCccc--------CCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCC
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRS-QGASLEWM--------DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~--------d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~   84 (499)
                      +.+|.|||.+||++|+.++|++|++ -++++...        .-+|-+||-.|+.. ||.++|++|+++|+++|..  ..
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaA-GHl~vVk~L~~~ga~VN~t--T~  115 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAA-GHLEVVKLLLRRGASVNDT--TR  115 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhcc-CcHHHHHHHHHhcCccccc--cc
Confidence            4456677777777777777777777 34444321        23566666655554 7777777777777777765  45


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhh
Q 010851           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (499)
Q Consensus        85 ~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~  164 (499)
                      ...|||--||.-||.++|++|+++|+|+++.|..|.|.||+|+.+||.+|+++|++.|+|++  .++..|.|+|| .++.
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH-~caE  192 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALH-DCAE  192 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHH-hhhh
Confidence            55677777777777777777777777777777777777777777777777777777777777  77777777777 7777


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHH
Q 010851          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (499)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  208 (499)
                      .|+.+++++|+.+|+.++... .|.+|+..+...+..+.+..++
T Consensus       193 sG~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  193 SGSVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             cccHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHHHHHh
Confidence            777777777777777665444 3666766666666666665555

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=7.3e-27  Score=224.83  Aligned_cols=159  Identities=25%  Similarity=0.306  Sum_probs=152.0

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      ...+|-+||..|+..||+++||.|+++|+++|.......|||--||.. |+.+++++|+++|+|+++.  |+.|.|.||+
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD-G~leivKyLvE~gad~~Ia--nrhGhTcLmI  156 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD-GHLEIVKYLVEHGADPEIA--NRHGHTCLMI  156 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc-chhHHHHHHHHcCCCCccc--ccCCCeeEEe
Confidence            456789999999999999999999999999999998999999999998 9999999999999999999  8999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      |+.+||.+|+++|++.|+|+|.++..|.|+||.+++.|+++++++|+.+|+.+.   +|..|.|||. .|+..|+.++++
T Consensus       157 a~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~-~Aa~tG~~~iVe  232 (615)
T KOG0508|consen  157 ACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---VDGHGMTPLL-LAAVTGHTDIVE  232 (615)
T ss_pred             eeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---ecCCCCchHH-HHhhhcchHHHH
Confidence            999999999999999999999999999999999999999999999999999875   7888999999 999999999999


Q ss_pred             HHHhcC
Q 010851          173 VVIPCG  178 (499)
Q Consensus       173 ~Ll~~g  178 (499)
                      +|+...
T Consensus       233 ~L~~~~  238 (615)
T KOG0508|consen  233 RLLQCE  238 (615)
T ss_pred             HHhcCC
Confidence            999733

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=4.8e-27  Score=219.50  Aligned_cols=172  Identities=25%  Similarity=0.373  Sum_probs=154.3

Q ss_pred             CCCcccccCccccCCCchHHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCChHHHHHHHc----CCcHHHHHHHHHcCC
Q 010851            1 MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQG-ASLEWMDKEGKTPLIVACMD----SGLINVAKTLIELGA   75 (499)
Q Consensus         1 ~~~~l~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~g~TpLh~Aa~~----~g~~~~v~~Ll~~ga   75 (499)
                      |+-.|-.+-+|.-|.+|+|+||||+.++|+++|+.||+.| +++|.+|.-|+||+|+|+..    ..+.++|..|.+.| 
T Consensus       252 ls~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-  330 (452)
T KOG0514|consen  252 LSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-  330 (452)
T ss_pred             cChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-
Confidence            3445556778889999999999999999999999999988 69999999999999999864    24578888888775 


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-ccccccccccccC
Q 010851           76 NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYG  154 (499)
Q Consensus        76 ~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g  154 (499)
                      |+|.+- ...|+|+||+|+.+|+.++|+.||..|+|+|.+|.+|.|+||.|+++||.||+++||.. ++|+.  +.|.+|
T Consensus       331 nVNaKA-sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--LtD~Dg  407 (452)
T KOG0514|consen  331 DVNAKA-SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LTDVDG  407 (452)
T ss_pred             Ccchhh-hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--eecCCC
Confidence            788773 67899999999999999999999999999999999999999999999999999999976 46887  999999


Q ss_pred             CCHHHHHhhhcCCHHHHHHHHhc
Q 010851          155 PSFLEALAPQLMSRKIWVVVIPC  177 (499)
Q Consensus       155 ~t~Lh~~A~~~~~~~~~~~Ll~~  177 (499)
                      .|+|. +|...|+.+|.-+|..+
T Consensus       408 STAl~-IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  408 STALS-IALEAGHREIAVMLYAH  429 (452)
T ss_pred             chhhh-hHHhcCchHHHHHHHHH
Confidence            99999 99999999999888654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=8e-26  Score=225.62  Aligned_cols=175  Identities=13%  Similarity=-0.040  Sum_probs=151.1

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCChHHHHHHH--cCCcHHHHHHHHHcCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACM--DSGLINVAKTLIELGANIN   78 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------~~d~~g~TpLh~Aa~--~~g~~~~v~~Ll~~ga~~~   78 (499)
                      +.++|.++.+|     +|+..+..|++++|+.+|+++|      .++..++|+||+|+.  . |+.++|++|+++||+++
T Consensus        72 ~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~-n~~eiV~~LI~~GADIn  145 (437)
T PHA02795         72 RDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY-VEIDIVDFMVDHGAVIY  145 (437)
T ss_pred             Ccchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC-CCHHHHHHHHHCCCCCC
Confidence            45666666666     9999999999999999999998      788899999999998  6 89999999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc------CCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccc
Q 010851           79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR------NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF  152 (499)
Q Consensus        79 ~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~------d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  152 (499)
                      ..    ++.||||.|+..++.+++++|+++|++....      +..+.|++|.|...++.+++++|+++|++++  .+|.
T Consensus       146 ~~----~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~  219 (437)
T PHA02795        146 KI----ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDA  219 (437)
T ss_pred             CC----CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCC
Confidence            75    4589999999999999999999999854222      2358899999999999999999999999999  9999


Q ss_pred             cCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCc
Q 010851          153 YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYP  194 (499)
Q Consensus       153 ~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~  194 (499)
                      .|.|||| +|+..|+.+++++|+++|++++.++..|.++++.
T Consensus       220 ~G~TpLh-~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~  260 (437)
T PHA02795        220 GGRTLLY-RAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV  260 (437)
T ss_pred             CCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            9999999 9999999999999999999865444333333333

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=3.8e-25  Score=244.84  Aligned_cols=167  Identities=15%  Similarity=0.160  Sum_probs=156.2

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      .+.++.++||.||..|+.++++.|+++|+++|..|..|+||||+||.+ |+.+++++|+++|+++|.+  |.+|+||||+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadin~~--d~~G~TpL~~  597 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK-GYEDCVLVLLKHACNVHIR--DANGNTALWN  597 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCCc--CCCCCCHHHH
Confidence            455678999999999999999999999999999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      |+..|+.+++++|++.++..+  ...|.++||.|+..|+.+++++|+++|++++  .+|.+|+|||| +|+..|+.++++
T Consensus       598 A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh-~A~~~g~~~iv~  672 (823)
T PLN03192        598 AISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQ-VAMAEDHVDMVR  672 (823)
T ss_pred             HHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHH
Confidence            999999999999999887654  3457799999999999999999999999999  99999999999 999999999999


Q ss_pred             HHHhcCCCCCCCCcc
Q 010851          173 VVIPCGTANPSKPLR  187 (499)
Q Consensus       173 ~Ll~~ga~~~~~~~~  187 (499)
                      +|+++|++++..+..
T Consensus       673 ~Ll~~GAdv~~~~~~  687 (823)
T PLN03192        673 LLIMNGADVDKANTD  687 (823)
T ss_pred             HHHHcCCCCCCCCCC
Confidence            999999999877643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=8.6e-25  Score=228.20  Aligned_cols=198  Identities=17%  Similarity=0.084  Sum_probs=163.6

Q ss_pred             Ccc-ccCCCchHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCChHHHHHHHcC-CcHHHHHHHHHcCCCC--CccC
Q 010851            9 NQH-QQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANI--NAYR   81 (499)
Q Consensus         9 ~~~-~~d~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~-g~~~~v~~Ll~~ga~~--~~~~   81 (499)
                      ++| .+|.+|+||||+|+..|   +.++|++||++|++++.+|..|+||||+|+..+ ++.|+|++|++.|++.  +.. 
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~-  110 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT-  110 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc-
Confidence            666 78899999999999997   599999999999999999999999999999862 3799999999997655  555 


Q ss_pred             CCCCCCcHHHHHHH--cCCHHHHHHHHH-CCCCCcccC-----CCCCCHHHHHHHcCCHHHHHHHHHcccccccc-----
Q 010851           82 PGGRGGTPLHHAAK--RGLEPTVRLLLS-CGANALVRN-----DDCHTALGVARIKGHINVVRAIESHICYFCGW-----  148 (499)
Q Consensus        82 ~d~~g~TpL~~A~~--~g~~~~v~~Ll~-~ga~~~~~d-----~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~-----  148 (499)
                       +..+.+|||.++.  +++.++|++|+. .+++++...     ..|.+|++++...++.++|++|+++|++++|.     
T Consensus       111 -~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        111 -SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             -cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence             7779999999998  899999999997 668877653     37999999999999999999999999999642     


Q ss_pred             cccccC-CCHHHHHh------hhcCCHHHHHHHHhcCCCCCCCCcccccccCc--cccccChHHHHHHHH
Q 010851          149 LREFYG-PSFLEALA------PQLMSRKIWVVVIPCGTANPSKPLRFELVIYP--SLQDVQPRAVIALWK  209 (499)
Q Consensus       149 ~~~~~g-~t~Lh~~A------~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~~  209 (499)
                      ..+..+ .|.|| +.      ...++.+++++||++|++++.++..|++++|.  +........+..|..
T Consensus       190 ~~~~~~c~~~l~-~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        190 MYDSDRCKNSLH-YYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccCCccchhHH-HHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            233344 44555 22      46778999999999999999999999999984  333333455555544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=7e-25  Score=237.19  Aligned_cols=230  Identities=22%  Similarity=0.183  Sum_probs=169.6

Q ss_pred             ccCccccCCCchHHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      +.+.+..++.|.|++|+|+..| ..++...+++.|.++|..-..|.||||+|+.. |+.++++.|++.++..+..  ...
T Consensus       430 gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~-Gh~~~~~llle~~~~~~~~--~~~  506 (1143)
T KOG4177|consen  430 GASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQE-GHTEVVQLLLEGGANDNLD--AKK  506 (1143)
T ss_pred             CCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhcc-CCchHHHHhhhcCCccCcc--chh
Confidence            3445555666666666666666 55566666666666666666666666666655 6666666666666555544  455


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      |.|+||+|...++..+++.|+++|++++.++.+|+||||.|+..|+..+|++|+++|++++  .+++.|+|||| .|+..
T Consensus       507 ~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~--ak~~~G~TPLH-~Aa~~  583 (1143)
T KOG4177|consen  507 GLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN--AKDKLGYTPLH-QAAQQ  583 (1143)
T ss_pred             ccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc--ccCCCCCChhh-HHHHc
Confidence            6666666666666666666777788888999999999999999999999999999999999  99999999999 99999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCCCCH
Q 010851          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDK  245 (499)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~~~~  245 (499)
                      |+.+|+++|+++|+++|..+..+.++++++...+....+..+.......     ........+..|.+|..++.+...+.
T Consensus       584 G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~-----~~~~~~~e~~~g~~p~~v~e~~~~~~  658 (1143)
T KOG4177|consen  584 GHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP-----AATDPVKENRKGAVPEDVAEELDTDR  658 (1143)
T ss_pred             ChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc-----ccccchhhhhcccChhhHHHHhhhhh
Confidence            9999999999999999999999999999998888765555433222111     11124556778999999888555555


Q ss_pred             HH
Q 010851          246 HQ  247 (499)
Q Consensus       246 ~~  247 (499)
                      ..
T Consensus       659 ~~  660 (1143)
T KOG4177|consen  659 QD  660 (1143)
T ss_pred             hh
Confidence            43

>PHA02792 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.8e-24  Score=222.06  Aligned_cols=105  Identities=10%  Similarity=-0.118  Sum_probs=62.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcccccccccccccC--CCHHHHHhhhcCCH---HHHHHHHhcCCCCCCCCcccccccCcccc
Q 010851          123 LGVARIKGHINVVRAIESHICYFCGWLREFYG--PSFLEALAPQLMSR---KIWVVVIPCGTANPSKPLRFELVIYPSLQ  197 (499)
Q Consensus       123 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g--~t~Lh~~A~~~~~~---~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~  197 (499)
                      ++.|+..|+.++|++|+++|++++  .+|..|  .|||| +|...+..   +++++|+++|++++.++..+.+++|.+..
T Consensus       343 ~~~Aa~~gn~eIVelLIs~GADIN--~kD~~g~~~TpLh-~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~  419 (631)
T PHA02792        343 YFQKFDNRDPKVVEYILKNGNVVV--EDDDNIINIMPLF-PTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIE  419 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCchh--hhcCCCCChhHHH-HHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHH
Confidence            344444455566666666666665  555443  46666 44444333   24566666666666666666666666665


Q ss_pred             ccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          198 DVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       198 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      ......+..++.          .++.++.+|..|+|||++|..
T Consensus       420 ~~n~eivelLLs----------~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        420 SHSVSLVEWLID----------NGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             cCCHHHHHHHHH----------CCCCCCCcCCCCCCHHHHHHH
Confidence            555444333222          244588999999999999873

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=2.9e-24  Score=191.86  Aligned_cols=148  Identities=19%  Similarity=0.174  Sum_probs=127.7

Q ss_pred             CcccccCccccCCCchHHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHH---HHHHHHHcCC
Q 010851            3 QSLNSMNQHQQRQSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN---VAKTLIELGA   75 (499)
Q Consensus         3 ~~l~~~~~~~~d~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~---~v~~Ll~~ga   75 (499)
                      -+-++++.+..+.++.++||+|++.|+.    +++++|+++|++++.+|..|+||||+|+.. |+.+   ++++|+++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~-g~~~~~~~i~~Ll~~Ga   84 (166)
T PHA02743          6 TAGNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWY-DRANAVMKIELLVNMGA   84 (166)
T ss_pred             CcccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHh-CccCHHHHHHHHHHcCC
Confidence            3456677778888899999999999998    566677888999999999999999999987 6644   4889999999


Q ss_pred             CCCccCCC-CCCCcHHHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccc
Q 010851           76 NINAYRPG-GRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFY  153 (499)
Q Consensus        76 ~~~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  153 (499)
                      ++|.+  + ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++  .++..
T Consensus        85 din~~--d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~  160 (166)
T PHA02743         85 DINAR--ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD--DPLSI  160 (166)
T ss_pred             CCCCC--CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcccC
Confidence            99988  6 579999999999999999999995 799999999999999999999999999999999999988  66665


Q ss_pred             CC
Q 010851          154 GP  155 (499)
Q Consensus       154 g~  155 (499)
                      |.
T Consensus       161 ~~  162 (166)
T PHA02743        161 GL  162 (166)
T ss_pred             Cc
Confidence            53

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=5.1e-24  Score=227.82  Aligned_cols=208  Identities=13%  Similarity=0.065  Sum_probs=157.0

Q ss_pred             HHHHHHHHHcCCCCcccCCCCChHHHHHHHc--CCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCH----HHHH
Q 010851           30 VDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE----PTVR  103 (499)
Q Consensus        30 ~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~----~~v~  103 (499)
                      ++.||.|+.+|..++.+|..|+||||+|+..  .|+.+++++||+.|++++.+  +..|+||||+|+..|+.    ++++
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~--~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK--NWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc--CCCCCCHHHHHHHcCChhHHHHHHH
Confidence            5788999999999999999999999998543  26799999999999999988  89999999999999995    4568


Q ss_pred             HHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHH-hhhcCCHHHHHHHHhcCCCCC
Q 010851          104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL-APQLMSRKIWVVVIPCGTANP  182 (499)
Q Consensus       104 ~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~-A~~~~~~~~~~~Ll~~ga~~~  182 (499)
                      +|++.+...+..+  ..+++|+|+..|+.++|++|+++|++++  .+|..|+||||.+ ++..++.+++++|+++|++++
T Consensus        90 ~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin--~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917         90 ALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS--VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             HHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC--ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            8988765444433  2377888999999999999999999999  9999999999943 346889999999999999997


Q ss_pred             CCCcccccc-cCccccccChHHHHHHHHh-------------hcCCCccCC-CCCceeeecCCCcchhHhHhhCCC
Q 010851          183 SKPLRFELV-IYPSLQDVQPRAVIALWKA-------------KIDEPKFHQ-PDPSLTIYDQATKIRYKFASANEG  243 (499)
Q Consensus       183 ~~~~~~~~~-l~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~-~~~~~~~~d~~g~tpl~~a~~~~~  243 (499)
                      ..+..+... .+...+.....++++++..             ..+..++.. .+.+++..|..|.||||+|+.+..
T Consensus       166 ~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        166 YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             ccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCC
Confidence            654322110 0011112222344443311             111112222 355699999999999999997665

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=219.60  Aligned_cols=212  Identities=17%  Similarity=0.114  Sum_probs=155.7

Q ss_pred             cCCCchHHHH------HHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHH--HHHcCCcHHHHHHHHH------------
Q 010851           13 QRQSKDELLY------QWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIV--ACMDSGLINVAKTLIE------------   72 (499)
Q Consensus        13 ~d~~g~t~L~------~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~--Aa~~~g~~~~v~~Ll~------------   72 (499)
                      .+....|.||      .+...++.+++++||++|+++|.+|..|+||||+  |... |+.|++++|++            
T Consensus       192 ~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~-~~~eiv~~Li~~~~~~~~~~~~~  270 (672)
T PHA02730        192 DSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCST-IDIEIVKLLIKDVDTCSVYDDIS  270 (672)
T ss_pred             cCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCc-ccHHHHHHHHhcccccccccccc
Confidence            3445556666      2356788889999999999888888889999985  3333 66888888888            


Q ss_pred             --------------------cCCCCCc--------------------cCCCCCCCc---------------------HHH
Q 010851           73 --------------------LGANINA--------------------YRPGGRGGT---------------------PLH   91 (499)
Q Consensus        73 --------------------~ga~~~~--------------------~~~d~~g~T---------------------pL~   91 (499)
                                          +|+|+..                    .  +..|.+                     -||
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~  348 (672)
T PHA02730        271 QPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSY--DSREYNHYIIDNILKRFRQQDESIVQAMLI  348 (672)
T ss_pred             chhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccc--cccccchhHHHHHHHhhhccchhHHHHHHH
Confidence                                7888765                    3  556654                     677


Q ss_pred             HHHHcC---CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCC----HHHHHHHHHccc--ccccccccccCCCHHHH--
Q 010851           92 HAAKRG---LEPTVRLLLSCGANALVRNDDCHTALGVARIKGH----INVVRAIESHIC--YFCGWLREFYGPSFLEA--  160 (499)
Q Consensus        92 ~A~~~g---~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~g~--~~~~~~~~~~g~t~Lh~--  160 (499)
                      .-...+   +.+++++|+++||+++.. ..|.||||+|+..++    .+++++|+++|+  +++  .+|..|+||||.  
T Consensus       349 ~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN--~kd~~G~T~Lh~~i  425 (672)
T PHA02730        349 NYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN--HVSNNGRLCMYGLI  425 (672)
T ss_pred             HHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc--ccccCCCchHhHHH
Confidence            777755   578889999999888874 788899998887774    788999988887  466  788888898882  


Q ss_pred             HhhhcC---------CHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecC-C
Q 010851          161 LAPQLM---------SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ-A  230 (499)
Q Consensus       161 ~A~~~~---------~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~-~  230 (499)
                      ++...+         ..+++++|+++|++++.++..+.++++++........+..|..          .++.++..|+ .
T Consensus       426 ~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~----------~GAdIN~~d~~~  495 (672)
T PHA02730        426 LSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE----------YGASVNTTSRSI  495 (672)
T ss_pred             HHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHH----------CCCCCCCCCCcC
Confidence            222221         2356888888998888888888888888877666544443322          2344788886 5


Q ss_pred             CcchhHhHhh
Q 010851          231 TKIRYKFASA  240 (499)
Q Consensus       231 g~tpl~~a~~  240 (499)
                      |.||||+|+.
T Consensus       496 g~TaL~~Aa~  505 (672)
T PHA02730        496 INTAIQKSSY  505 (672)
T ss_pred             CcCHHHHHHH
Confidence            8999999875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=8.4e-25  Score=236.57  Aligned_cols=219  Identities=24%  Similarity=0.217  Sum_probs=197.9

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCC-cHHHHHHHHHcCCCCCccCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAYRPGG   84 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g-~~~~v~~Ll~~ga~~~~~~~d~   84 (499)
                      .+.+.+.+.+.|.||||.|+.+++..+|+.++++|++++.++..|+||+|+|+.. | ..+++..++++|+++|..  ..
T Consensus       396 ~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~-g~~~~~~~~l~~~g~~~n~~--s~  472 (1143)
T KOG4177|consen  396 AGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK-GRYLQIARLLLQYGADPNAV--SK  472 (1143)
T ss_pred             ccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc-ccHhhhhhhHhhcCCCcchh--cc
Confidence            3566888899999999999999999999999999999999999999999999988 7 889999999999999998  78


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhh
Q 010851           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (499)
Q Consensus        85 ~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~  164 (499)
                      .|.||||+|+..||.+++..|++.++..+.....|.++||+|...++..+++.++++|++++  .++.+|.|||| .|+.
T Consensus       473 ~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~--~~~~r~~TpLh-~A~~  549 (1143)
T KOG4177|consen  473 QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVD--LRTGRGYTPLH-VAVH  549 (1143)
T ss_pred             ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCcee--hhcccccchHH-HHHh
Confidence            99999999999999999999999998888888899999999999999999999999999998  99999999999 9999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      .|+.+++++||++|++.+.++..+.+|+|.+...+....+..|.+.          ++.+|..|..|.|||++|+.
T Consensus       550 ~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~----------GA~vna~d~~g~TpL~iA~~  615 (1143)
T KOG4177|consen  550 YGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH----------GASVNAADLDGFTPLHIAVR  615 (1143)
T ss_pred             cCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc----------CCCCCcccccCcchhHHHHH
Confidence            9999999999999999999999999999999998865555543333          45589999999999999994

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.6e-24  Score=189.46  Aligned_cols=182  Identities=19%  Similarity=0.153  Sum_probs=151.1

Q ss_pred             CccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCc
Q 010851            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   88 (499)
                      .+...|.+|+.+++.|+-.|+...++.+|.+|+..|..+-.+++|+++++.. .+.+.+.+|.+.  .+|..  |..|.|
T Consensus        88 ~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq-l~L~~~~~~~~n--~VN~~--De~GfT  162 (296)
T KOG0502|consen   88 AIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ-LHLDVVDLLVNN--KVNAC--DEFGFT  162 (296)
T ss_pred             CCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH-HHHHHHHHHhhc--cccCc--cccCch
Confidence            3445677789999999988888888888988888888888889999998876 777766665554  55665  788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCH
Q 010851           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (499)
Q Consensus        89 pL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~  168 (499)
                      ||+||+.+|++.+|++||+.|+|++...+...++|++|...|..+||++|+.++.|+|  ..|.+|-|||- +|+..|+.
T Consensus       163 pLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLl-yAvrgnhv  239 (296)
T KOG0502|consen  163 PLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLL-YAVRGNHV  239 (296)
T ss_pred             HhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceee-eeecCChH
Confidence            9999999999999999999999988888888889999999999999999999988888  88888999988 88899999


Q ss_pred             HHHHHHHhcCCCCCCCCcccccccCccccc
Q 010851          169 KIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (499)
Q Consensus       169 ~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~  198 (499)
                      +|++.||..|++++..+..|...+..+..-
T Consensus       240 kcve~Ll~sGAd~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  240 KCVESLLNSGADVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             HHHHHHHhcCCCcccccccCCcHHHHHHHh
Confidence            999999999998888887776655554433

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=2.3e-24  Score=188.53  Aligned_cols=169  Identities=24%  Similarity=0.184  Sum_probs=152.7

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      ++...|..+-.+.+|+.+++...+++.+..|.+.  .+|..|..|.|||+||+.+ |++++|++||+.|++++..  .+.
T Consensus       118 N~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~-G~i~vV~fLL~~GAdp~~l--gk~  192 (296)
T KOG0502|consen  118 NGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK-GHIPVVQFLLNSGADPDAL--GKY  192 (296)
T ss_pred             ccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc-CchHHHHHHHHcCCChhhh--hhh
Confidence            3455667788899999999999999888777665  5778999999999999998 9999999999999999998  788


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      ..++|++|.+.|..++|++||.++.|+|..|.+|-|||-||++.||.+|++.|+..|++++  ..+..|.+++. +|+..
T Consensus       193 resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~md-lAVal  269 (296)
T KOG0502|consen  193 RESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMD-LAVAL  269 (296)
T ss_pred             hhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHH-HHHHh
Confidence            8899999999999999999999999999999999999999999999999999999999999  89999999999 89999


Q ss_pred             CCHHHHHHHHhcCCCCCC
Q 010851          166 MSRKIWVVVIPCGTANPS  183 (499)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~  183 (499)
                      |+. +++..|++.+....
T Consensus       270 Gyr-~Vqqvie~h~lkl~  286 (296)
T KOG0502|consen  270 GYR-IVQQVIEKHALKLC  286 (296)
T ss_pred             hhH-HHHHHHHHHHHHHh
Confidence            887 77777777665433

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=3.1e-23  Score=186.06  Aligned_cols=132  Identities=22%  Similarity=0.269  Sum_probs=94.3

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCChHHHHHHHcCCc----HHHHHHHHHcCCCCCc
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRS------QGASLEWMDKEGKTPLIVACMDSGL----INVAKTLIELGANINA   79 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~------~g~~~~~~d~~g~TpLh~Aa~~~g~----~~~v~~Ll~~ga~~~~   79 (499)
                      .+.+|..|.|+||+|+..|+.++|+.|+.      .|++++.+|..|+||||+|+.. |+    .+++++|+++|+++|.
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~-g~~~~~~~ii~~Ll~~gadin~   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEK-HEAQLAAEIIDHLIELGADINA   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHcCCCCCC
Confidence            34566777777777777777777777643      2466777777777777777775 65    4677777777777776


Q ss_pred             cCCCC-CCCcHHHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 010851           80 YRPGG-RGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (499)
Q Consensus        80 ~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  144 (499)
                      +  +. .|+||||+|+..++.+++++|+. .|++++..|.+|+||||+|+..++.+++++|++.++.
T Consensus        93 ~--~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         93 Q--EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             C--CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6  43 67777777777777777777776 4777777777777777777777777777777776543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=6.3e-23  Score=197.42  Aligned_cols=157  Identities=22%  Similarity=0.175  Sum_probs=136.4

Q ss_pred             ccccCCCchH-HHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCC
Q 010851           10 QHQQRQSKDE-LLYQWVIAGDVDAIRALRSQGASLEWMD----KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (499)
Q Consensus        10 ~~~~d~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d----~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~   84 (499)
                      ...+|+.|.| +||.|+..|+.+++++|+++|+++|.++    ..|.||||+|+.. ++.+++++|+++|+++|.++ +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~-~~~eivklLL~~GADVN~~~-~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDC-DNDDAAKLLIRYGADVNRYA-EE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcCccc-CC
Confidence            3456777766 5666777899999999999999999874    5899999999997 99999999999999999862 45


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhh
Q 010851           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (499)
Q Consensus        85 ~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~  164 (499)
                      .|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.+++.++...       ..+..+.+|++ +.  
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~--  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN-------EISNFYKHPKK-IL--  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC-------cccccccChhh-hh--
Confidence            799999999999999999999999999999999999999999999999988666532       24567889998 43  


Q ss_pred             cCCHHHHHHHHhcCC
Q 010851          165 LMSRKIWVVVIPCGT  179 (499)
Q Consensus       165 ~~~~~~~~~Ll~~ga  179 (499)
                       ++.+++++|+.++.
T Consensus       173 -~n~ei~~~Lish~v  186 (300)
T PHA02884        173 -INFDILKILVSHFI  186 (300)
T ss_pred             -ccHHHHHHHHHHHH
Confidence             46899999999987

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-23  Score=213.22  Aligned_cols=219  Identities=22%  Similarity=0.176  Sum_probs=187.0

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      .-+.|.+|.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|++. |+.+++++|+.++..+|..  +..|
T Consensus        39 sds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~-g~~e~vkmll~q~d~~na~--~~e~  115 (854)
T KOG0507|consen   39 SDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWN-GNLEIVKMLLLQTDILNAV--NIEN  115 (854)
T ss_pred             CccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhc-CcchHHHHHHhcccCCCcc--cccC
Confidence            346778899999999999999999999999999999999999999999999998 9999999999999999998  8999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc------cccccccCCCHHHH
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC------GWLREFYGPSFLEA  160 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~~~g~t~Lh~  160 (499)
                      .||||+|+..||.++|.+|+.+|+|+-.+|..+.|+|.+|++.|..++|+.|++......      ...++..+-++|| 
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH-  194 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH-  194 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc-
Confidence            999999999999999999999999999999999999999999999999999998732221      1245667888999 


Q ss_pred             HhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          161 LAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      +|+++|+.++++.|++.|.++|..... .+++|.+..-++...+..+++.          +-...++|.+|+|.|+....
T Consensus       195 laakngh~~~~~~ll~ag~din~~t~~-gtalheaalcgk~evvr~ll~~----------gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  195 LAAKNGHVECMQALLEAGFDINYTTED-GTALHEAALCGKAEVVRFLLEI----------GINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             hhhhcchHHHHHHHHhcCCCccccccc-chhhhhHhhcCcchhhhHHHhh----------ccccccccccchHHHHHHHh
Confidence            999999999999999999999987743 3555555544443333333333          22367889999999998884

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=4.1e-23  Score=184.47  Aligned_cols=143  Identities=15%  Similarity=0.170  Sum_probs=130.3

Q ss_pred             cCCCCcccCCCCChHHHHHHHcCCcH----HHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHH---HHHHHHCCCC
Q 010851           39 QGASLEWMDKEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPT---VRLLLSCGAN  111 (499)
Q Consensus        39 ~g~~~~~~d~~g~TpLh~Aa~~~g~~----~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~---v~~Ll~~ga~  111 (499)
                      +|++++..+.++.++||+||+. |+.    +++++|++.|++++.+  |..|+||||+|+..|+.++   +++|+++|++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~-g~~~~l~~~~~~l~~~g~~~~~~--d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRT-GNIYELMEVAPFISGDGHLLHRY--DHHGRQCTHMVAWYDRANAVMKIELLVNMGAD   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHc-CCHHHHHHHHHHHhhcchhhhcc--CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence            5678888999999999999998 776    6777888999999988  8899999999999988654   8999999999


Q ss_pred             CcccC-CCCCCHHHHHHHcCCHHHHHHHHH-cccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcc
Q 010851          112 ALVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLR  187 (499)
Q Consensus       112 ~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~  187 (499)
                      ++.+| ..|.||||+|+..|+.+++++|+. .|++++  .+|..|+|||| +|+..++.+++++|+++|++.+.++..
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~-~A~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYH-IAYKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence            99998 589999999999999999999995 799998  89999999999 999999999999999999999887754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=8.9e-23  Score=226.05  Aligned_cols=149  Identities=21%  Similarity=0.140  Sum_probs=140.1

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      .+++.|.+|.+|+||||+|+..|+.++++.|+++|+++|.+|.+|+||||+|+.. |+.+++++|++.++..+    ...
T Consensus       547 ~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~----~~~  621 (823)
T PLN03192        547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-KHHKIFRILYHFASISD----PHA  621 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccC----ccc
Confidence            4678899999999999999999999999999999999999999999999999997 99999999999887766    346


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccC-CCHHHHHh
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG-PSFLEALA  162 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g-~t~Lh~~A  162 (499)
                      |.++||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++++  ..|..| .||++ ++
T Consensus       622 ~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~--~~~~~g~~t~~~-l~  696 (823)
T PLN03192        622 AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD--KANTDDDFSPTE-LR  696 (823)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HH
Confidence            7799999999999999999999999999999999999999999999999999999999999  888888 99988 44

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=1.8e-22  Score=222.16  Aligned_cols=216  Identities=16%  Similarity=0.137  Sum_probs=165.0

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCChHHH-HHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHH
Q 010851           15 QSKDELLYQWVIAGDVDAIRALRSQ--GASLEWMDKEGKTPLI-VACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (499)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~TpLh-~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~   91 (499)
                      ..++..|+.|++.|+.+.|+.++++  +.++|..|..|+|||| .|+. +++.+++++|+++|+    .  +..|.||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~-~~~~eiv~lLl~~g~----~--~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIE-NENLELTELLLNLSC----R--GAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHh-cChHHHHHHHHhCCC----C--CCcChHHHH
Confidence            4568999999999999999999998  8999999999999999 6665 499999999999998    3  678999999


Q ss_pred             HHHHcC---CHHHHHHHHHCCCC------C----cccCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc-------
Q 010851           92 HAAKRG---LEPTVRLLLSCGAN------A----LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-------  151 (499)
Q Consensus        92 ~A~~~g---~~~~v~~Ll~~ga~------~----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------  151 (499)
                      .|+..+   ...++++++..+.+      +    ...+..|.||||+|+.+|+.++|++|+++|++++  .++       
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~--~~~~~~~~~~  165 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFFVK  165 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC--cCcCCchhhc
Confidence            998732   22344445544422      1    1123579999999999999999999999999998  432       


Q ss_pred             -------ccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHH--------HHHHHHhhcCCCc
Q 010851          152 -------FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA--------VIALWKAKIDEPK  216 (499)
Q Consensus       152 -------~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~--------~~~l~~~~~~~~~  216 (499)
                             ..|.|||| +|+..++.+++++|+++|+|++.++..+.+++|.+......+.        ...++......  
T Consensus       166 ~~~~~~~~~g~tpL~-~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~--  242 (743)
T TIGR00870       166 SQGVDSFYHGESPLN-AAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK--  242 (743)
T ss_pred             CCCCCcccccccHHH-HHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc--
Confidence                   36899999 9999999999999999999999999889999988876642111        11111111000  


Q ss_pred             cCCCCCceeeecCCCcchhHhHhhCC
Q 010851          217 FHQPDPSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       217 ~~~~~~~~~~~d~~g~tpl~~a~~~~  242 (499)
                      ........++.|+.|.|||++|+...
T Consensus       243 ~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       243 LRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             cCChHhhhhhcCCCCCCchhhhhhcC
Confidence            00111123778999999999999533

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=4.8e-22  Score=178.34  Aligned_cols=140  Identities=16%  Similarity=0.118  Sum_probs=124.4

Q ss_pred             HHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHH------cCCCCCccCCCCCCCcHHHHHHHcCC----H
Q 010851           30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE------LGANINAYRPGGRGGTPLHHAAKRGL----E   99 (499)
Q Consensus        30 ~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~------~ga~~~~~~~d~~g~TpL~~A~~~g~----~   99 (499)
                      ..+++.++      +.+|..|.||||+|+.. |+.+++++|+.      .|++++.+  |..|+||||+|+..|+    .
T Consensus         7 ~~~~~~~~------~~~~~~g~t~Lh~Aa~~-g~~~~v~~l~~~~~~~~~ga~in~~--d~~g~T~Lh~A~~~g~~~~~~   77 (169)
T PHA02741          7 MTCLEEMI------AEKNSEGENFFHEAARC-GCFDIIARFTPFIRGDCHAAALNAT--DDAGQMCIHIAAEKHEAQLAA   77 (169)
T ss_pred             HHHHHHHh------hccccCCCCHHHHHHHc-CCHHHHHHHHHHhccchhhhhhhcc--CCCCCcHHHHHHHcCChHHHH
Confidence            34455554      35788999999999998 99999999864      36889988  8899999999999999    5


Q ss_pred             HHHHHHHHCCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHH-cccccccccccccCCCHHHHHhhhcCCHHHHHHHHhc
Q 010851          100 PTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (499)
Q Consensus       100 ~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~  177 (499)
                      +++++|+++|++++.++. .|+||||+|+..++.+++++|+. .|++++  .+|.+|+|||| +|...++.+++++|++.
T Consensus        78 ~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~-~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         78 EIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFE-LAIDNEDVAMMQILREI  154 (169)
T ss_pred             HHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHH-HHHHCCCHHHHHHHHHH
Confidence            899999999999999985 99999999999999999999998 599998  89999999999 99999999999999998


Q ss_pred             CCCC
Q 010851          178 GTAN  181 (499)
Q Consensus       178 ga~~  181 (499)
                      ++..
T Consensus       155 ~~~~  158 (169)
T PHA02741        155 VATS  158 (169)
T ss_pred             HHHh
Confidence            7643

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=9.8e-22  Score=203.29  Aligned_cols=181  Identities=14%  Similarity=0.064  Sum_probs=156.4

Q ss_pred             CccccCCCchHHHHHHHHcC-------CHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCC--cHHHHHHHHHc------
Q 010851            9 NQHQQRQSKDELLYQWVIAG-------DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG--LINVAKTLIEL------   73 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~~g-------~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g--~~~~v~~Ll~~------   73 (499)
                      ..|.+|+.|.||||+|+..+       +.++++.||++|++++.+|..|.||||+|+.+ .  ..|++++|+..      
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~-~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDK-CDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHc-ccchHHHHHHHHhccccccc
Confidence            45688999999999999999       89999999999999999999999999999987 5  56777776642      


Q ss_pred             --------------------------------------------------------------------------------
Q 010851           74 --------------------------------------------------------------------------------   73 (499)
Q Consensus        74 --------------------------------------------------------------------------------   73 (499)
                                                                                                      
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                                            


Q ss_pred             -----CCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCC--CCHHHHHHHcCCH---HHHHHHHHccc
Q 010851           74 -----GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC--HTALGVARIKGHI---NVVRAIESHIC  143 (499)
Q Consensus        74 -----ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g--~tpL~~A~~~g~~---~~v~~Ll~~g~  143 (499)
                           |++++    ...+...++.|+..|+.++|++|+++|++++.+|..|  .||||+|......   +++++|+++|+
T Consensus       326 ~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA  401 (631)
T PHA02792        326 CMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYID  401 (631)
T ss_pred             HHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCC
Confidence                 11111    1124567899999999999999999999999998775  6999998876654   46899999999


Q ss_pred             ccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCcccc
Q 010851          144 YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ  197 (499)
Q Consensus       144 ~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~  197 (499)
                      +++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++++.+..
T Consensus       402 DIN--~kD~~G~TPLh-~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        402 DIN--KIDKHGRSILY-YCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             ccc--cccccCcchHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999  99999999999 9999999999999999999999999999999998764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.6e-22  Score=177.41  Aligned_cols=132  Identities=20%  Similarity=0.153  Sum_probs=108.1

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCC-------CCcccCCCCChHHHHHHHcCCcH---HHHHHHHHcCCCCCc
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-------SLEWMDKEGKTPLIVACMDSGLI---NVAKTLIELGANINA   79 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-------~~~~~d~~g~TpLh~Aa~~~g~~---~~v~~Ll~~ga~~~~   79 (499)
                      .+.+|.+|.||||+|++.|+..  +.++.++.       .++.+|..|+||||+|+.. |+.   +++++|+++|++++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~-~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNP-DKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeeccc-CchhHHHHHHHHHHcCCCccc
Confidence            4567888999999999999843  33322221       2345688999999999987 765   568899999999998


Q ss_pred             cCCC-CCCCcHHHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 010851           80 YRPG-GRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (499)
Q Consensus        80 ~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  146 (499)
                      +  + ..|.||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus        87 ~--~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 K--ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             c--CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7  5 589999999999999999999997 489999999999999999999999999999999988753

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=3.6e-22  Score=196.47  Aligned_cols=187  Identities=23%  Similarity=0.228  Sum_probs=148.9

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCC
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~   87 (499)
                      .+.+..+.+|.|+||.++...+.++|++|+++|++||..|..|+||||.|+.. |+..++++|+.+|+++...  +.+|.
T Consensus        64 a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc-g~~~i~~~li~~gA~~~av--Nsdg~  140 (527)
T KOG0505|consen   64 ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC-GYLNIVEYLIQHGANLLAV--NSDGN  140 (527)
T ss_pred             CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc-ccHHHHHHHHHhhhhhhhc--cCCCC
Confidence            55677777888888888888888888888888888888888888888888766 8888888888888877766  55555


Q ss_pred             cHHHHHHHc-------------C-CHH------------HHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           88 TPLHHAAKR-------------G-LEP------------TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        88 TpL~~A~~~-------------g-~~~------------~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      .|+-++..-             | .++            =++..+..|.+.+..+..|-|.||.|+.+|..++.++|+++
T Consensus       141 ~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a  220 (527)
T KOG0505|consen  141 MPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQA  220 (527)
T ss_pred             CccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHh
Confidence            554332211             1 011            12233346777777887899999999999999999999999


Q ss_pred             ccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccC
Q 010851          142 ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (499)
Q Consensus       142 g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~  200 (499)
                      |.+++  .+|.+|||||| +|+.++..+++++|+++|++.+.....+++++-....+..
T Consensus       221 g~~~~--~~D~dgWtPlH-AAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~  276 (527)
T KOG0505|consen  221 GYSVN--IKDYDGWTPLH-AAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL  276 (527)
T ss_pred             ccCcc--cccccCCCccc-HHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH
Confidence            99999  99999999999 9999999999999999999999999999999887765544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=2.5e-21  Score=213.26  Aligned_cols=197  Identities=15%  Similarity=0.073  Sum_probs=157.9

Q ss_pred             ccCccccCCCchHHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHc--CCcHHHHHHHHHcCCC------C
Q 010851            7 SMNQHQQRQSKDELLY-QWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGAN------I   77 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~-~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~--~g~~~~v~~Ll~~ga~------~   77 (499)
                      +.++|..|..|+|||| .|+.+++.++++.|+++|+    .+..|.||||+|+..  .+...++++++..+.+      +
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            5788889999999999 8889999999999999987    678899999999972  1223344444444422      1


Q ss_pred             Ccc--CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC--------------CCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           78 NAY--RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        78 ~~~--~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      +..  +....|.||||+|+.+|+.++|++|+++|++++.++              ..|.||||+|+..|+.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence            111  013469999999999999999999999999998653              3589999999999999999999999


Q ss_pred             ccccccccccccCCCHHHHHhhhcC---------CHHHHHHHHhcCCCC-------CCCCcccccccCccccccChHHHH
Q 010851          142 ICYFCGWLREFYGPSFLEALAPQLM---------SRKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAVI  205 (499)
Q Consensus       142 g~~~~~~~~~~~g~t~Lh~~A~~~~---------~~~~~~~Ll~~ga~~-------~~~~~~~~~~l~~~~~~~~~~~~~  205 (499)
                      |++++  .+|..|+|||| +|+..+         ..++.+++++.++..       +..+..+.++++.+...+....+.
T Consensus       198 gadin--~~d~~g~T~Lh-~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~  274 (743)
T TIGR00870       198 PADIL--TADSLGNTLLH-LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFR  274 (743)
T ss_pred             Ccchh--hHhhhhhHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHH
Confidence            99999  99999999999 787775         234667777776654       455778899999999888887777


Q ss_pred             HHHHh
Q 010851          206 ALWKA  210 (499)
Q Consensus       206 ~l~~~  210 (499)
                      .++..
T Consensus       275 lLL~~  279 (743)
T TIGR00870       275 LKLAI  279 (743)
T ss_pred             HHHHH
Confidence            76653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=2.5e-21  Score=171.11  Aligned_cols=132  Identities=17%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCC-------CCccCCCCCCCcHHHHHHHcCCH---HHHHHHHHCCCCC
Q 010851           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-------INAYRPGGRGGTPLHHAAKRGLE---PTVRLLLSCGANA  112 (499)
Q Consensus        43 ~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~-------~~~~~~d~~g~TpL~~A~~~g~~---~~v~~Ll~~ga~~  112 (499)
                      .+..|..|.||||+|++. |+  ++++++..+..       ++.+  |..|+||||+|+..|+.   +++++|++.|+++
T Consensus        10 ~~~~d~~g~tpLh~A~~~-g~--~~~l~~~~~~~~~~~~~~~~~~--d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736         10 ASEPDIEGENILHYLCRN-GG--VTDLLAFKNAISDENRYLVLEY--NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             HHhcCCCCCCHHHHHHHh-CC--HHHHHHHHHHhcchhHHHHHHh--cCCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            456788999999999998 76  34444433322       2234  78899999999999987   4689999999999


Q ss_pred             cccC-CCCCCHHHHHHHcCCHHHHHHHHHc-ccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCC
Q 010851          113 LVRN-DDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP  182 (499)
Q Consensus       113 ~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~  182 (499)
                      +.++ ..|.||||+|+..|+.+++++|+.+ |++++  .+|..|+|||| +|+..++.+++++|+.+|++.+
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tpL~-~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTPYY-VACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC
Confidence            9998 4999999999999999999999984 89998  99999999999 9999999999999999998764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.2e-20  Score=159.43  Aligned_cols=143  Identities=22%  Similarity=0.219  Sum_probs=125.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHc
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~   96 (499)
                      .-.+.+|+..+.+..|+.||+..++ +|.+|.+|+||||-|+.+ |+.+||+.|+..|++++.+  ...||||||-|+.-
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn-~h~div~~ll~~gAn~~a~--T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN-GHLDIVHELLLSGANKEAK--TNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhc-CchHHHHHHHHccCCcccc--cccCccchhhhhcc
Confidence            4568999999999999999997764 899999999999999987 9999999999999999999  88999999999999


Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCH-HHHHHHHH-cccccccccccccCCCHHHHHhhhcC
Q 010851           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIES-HICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        97 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~-~~v~~Ll~-~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      ++.+++.+||.+|+|++.......||||+|+...+. ..+++|+. .+.+.-  .++..+.||+. +|-+.+
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~-iARRT~  209 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFD-IARRTS  209 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHH-HHHHhh
Confidence            999999999999999999999999999999987765 44555543 344444  78899999999 776654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=3.5e-21  Score=189.53  Aligned_cols=153  Identities=25%  Similarity=0.304  Sum_probs=130.6

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHH------------cCCc-HH-------
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM------------DSGL-IN-------   65 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~------------~~g~-~~-------   65 (499)
                      .+.++|.+|.+|+||||.|+-.|+..++++|+.+|+++-..|.+|..|+-++..            ..|- ++       
T Consensus        95 ~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e  174 (527)
T KOG0505|consen   95 NGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEE  174 (527)
T ss_pred             hcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhH
Confidence            357889999999999999999999999999999999998888888777544311            1010 11       


Q ss_pred             -----HHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010851           66 -----VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (499)
Q Consensus        66 -----~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  140 (499)
                           =++..+..|...++.  +..|.|.||.|+.+|..++.++|+.+|.+++.+|.+||||||.|+..|..++.++|++
T Consensus       175 ~~ml~D~~q~l~~G~~~d~~--~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~  252 (527)
T KOG0505|consen  175 QTMLDDARQWLNAGAELDAR--HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVE  252 (527)
T ss_pred             HHHHHHHHHHHhcccccccc--ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHH
Confidence                 133344578888888  5559999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCHHHHHhh
Q 010851          141 HICYFCGWLREFYGPSFLEALAP  163 (499)
Q Consensus       141 ~g~~~~~~~~~~~g~t~Lh~~A~  163 (499)
                      +|++++  .+...|.|||. +|.
T Consensus       253 ~ga~~d--~~t~~g~~p~d-v~d  272 (527)
T KOG0505|consen  253 HGADMD--AKTKMGETPLD-VAD  272 (527)
T ss_pred             hhcccc--hhhhcCCCCcc-chh
Confidence            999999  89999999999 554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=6.9e-21  Score=178.45  Aligned_cols=155  Identities=19%  Similarity=0.227  Sum_probs=135.3

Q ss_pred             CcccCCCCChHHHHHHHcCCcHHHHHHHHHcC-CCCCccCCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCCcccC
Q 010851           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGRGGTPLHHAAKR-----GLEPTVRLLLSCGANALVRN  116 (499)
Q Consensus        43 ~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~TpL~~A~~~-----g~~~~v~~Ll~~ga~~~~~d  116 (499)
                      +|.-|.+|+|+||||+.+ ++.++|+.||+.| +++|.+  ++-|+||+|+++..     .+.++|..|...| |+|++-
T Consensus       261 VNlaDsNGNTALHYsVSH-aNF~VV~~LLDSgvC~VD~q--NrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKA  336 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSH-ANFDVVSILLDSGVCDVDQQ--NRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKA  336 (452)
T ss_pred             hhhhcCCCCeeeeeeecc-cchHHHHHHhccCccccccc--ccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhh
Confidence            678999999999999998 8899999999987 689988  89999999999875     4678899998876 555543


Q ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCcc
Q 010851          117 -DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPS  195 (499)
Q Consensus       117 -~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~  195 (499)
                       ..|+|+||+|+.+|+.++|+.||..|+|+|  .+|.+|.|+|+ +|+..|+.+|+++||....                
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALM-CA~EHGhkEivklLLA~p~----------------  397 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALM-CAAEHGHKEIVKLLLAVPS----------------  397 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHh-hhhhhChHHHHHHHhccCc----------------
Confidence             689999999999999999999999999999  99999999999 9999999999999986442                


Q ss_pred             ccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCCCCHH
Q 010851          196 LQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKH  246 (499)
Q Consensus       196 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~~~~~  246 (499)
                                                .++...|.+|.|+|.+|.++.+...
T Consensus       398 --------------------------cd~sLtD~DgSTAl~IAleagh~eI  422 (452)
T KOG0514|consen  398 --------------------------CDISLTDVDGSTALSIALEAGHREI  422 (452)
T ss_pred             --------------------------ccceeecCCCchhhhhHHhcCchHH
Confidence                                      1267789999999999997544433

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=4.8e-20  Score=177.51  Aligned_cols=132  Identities=15%  Similarity=0.160  Sum_probs=115.5

Q ss_pred             CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc-CCCC
Q 010851           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR-NDDC  119 (499)
Q Consensus        43 ~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~--d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g  119 (499)
                      +..+|..|+|+++++|...|+.+++++|+++|+++|.++.  +..|.||||+|+..++.+++++|+++|++++.+ +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            3457888887666555555899999999999999998732  468999999999999999999999999999986 4689


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhc
Q 010851          120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (499)
Q Consensus       120 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~  177 (499)
                      .||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++.++...
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~-~A~~~~~~~~~~~~~~~  159 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIE-LALMICNNFLAFMICDN  159 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHhCChhHHHHhcCC
Confidence            999999999999999999999999999  89999999999 89888888887666543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=7.1e-20  Score=166.55  Aligned_cols=116  Identities=28%  Similarity=0.348  Sum_probs=79.1

Q ss_pred             CccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCc
Q 010851            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   88 (499)
                      +.|.-|..|.+|||||++.|+..+|+.||.+|+.+|.+|....||||+|+.+ ||.++|+.||++.+|+|..  +..|.|
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah-ghrdivqkll~~kadvnav--nehgnt  102 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH-GHRDIVQKLLSRKADVNAV--NEHGNT  102 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc-ccHHHHHHHHHHhcccchh--hccCCC
Confidence            4455566666777777777777777777777776666666666777777666 6667777777777777766  666777


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH
Q 010851           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR  127 (499)
Q Consensus        89 pL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~  127 (499)
                      ||||||.-|...+.+-|+..|+.+++.|++|.|||..|-
T Consensus       103 plhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            777777777666667777777666666777777766553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.4e-20  Score=167.88  Aligned_cols=159  Identities=23%  Similarity=0.286  Sum_probs=136.8

Q ss_pred             HHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHH
Q 010851           22 YQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP  100 (499)
Q Consensus        22 ~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~  100 (499)
                      +--++.|+.-.|+..|+ ..-|+|.-|..|.+|||+||+. |+..+++.||..|+.+|..  +....||||+|+..||-+
T Consensus         5 f~wcregna~qvrlwld~tehdln~gddhgfsplhwaake-gh~aivemll~rgarvn~t--nmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    5 FGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKE-GHVAIVEMLLSRGARVNST--NMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhc-ccHHHHHHHHhcccccccc--cCCCCcchhhhhhcccHH
Confidence            33466677666666665 5578899999999999999986 9999999999999999998  778889999999999999


Q ss_pred             HHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCC
Q 010851          101 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (499)
Q Consensus       101 ~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~  180 (499)
                      +|+.||+..+|+|..|..|.||||||+..|...+.+-|+..|+.++  ..+++|.|||. -|.-.-...+.++.-++|-.
T Consensus        82 ivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpld-kakp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen   82 IVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLD-KAKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             HHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchh-hhchHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999  99999999999 55433334455555577877


Q ss_pred             CCCCCc
Q 010851          181 NPSKPL  186 (499)
Q Consensus       181 ~~~~~~  186 (499)
                      ++..++
T Consensus       159 ~nripf  164 (448)
T KOG0195|consen  159 PNRIPF  164 (448)
T ss_pred             CCcccc
Confidence            776554

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.79  E-value=1.6e-19  Score=183.61  Aligned_cols=178  Identities=18%  Similarity=0.108  Sum_probs=158.1

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHH
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL   90 (499)
                      +..|..|.+|||+|+.+|+.+++++||.++..+|..+..|.||||.||.+ ||.+++.+|+++|+|.-.+  |..+.|+|
T Consensus        76 dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh-gh~dvv~~Ll~~~adp~i~--nns~~t~l  152 (854)
T KOG0507|consen   76 DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH-GHLEVVFYLLKKNADPFIR--NNSKETVL  152 (854)
T ss_pred             hhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh-cchHHHHHHHhcCCCcccc--CcccccHH
Confidence            44578899999999999999999999999999999999999999999998 9999999999999999988  88999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCC--------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHh
Q 010851           91 HHAAKRGLEPTVRLLLSCGAN--------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA  162 (499)
Q Consensus        91 ~~A~~~g~~~~v~~Ll~~ga~--------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A  162 (499)
                      -+|++.|..++|+.|++....        ...++-.+.+|||+|+++||.++++.|++.|.++|  ...+.| |+|| -|
T Consensus       153 dlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din--~~t~~g-talh-ea  228 (854)
T KOG0507|consen  153 DLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN--YTTEDG-TALH-EA  228 (854)
T ss_pred             HHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc--cccccc-hhhh-hH
Confidence            999999999999999976221        12355678899999999999999999999999999  554444 8999 89


Q ss_pred             hhcCCHHHHHHHHhcCCCCCCCCcccccccCcc
Q 010851          163 PQLMSRKIWVVVIPCGTANPSKPLRFELVIYPS  195 (499)
Q Consensus       163 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~  195 (499)
                      +..|..+++.+|++.|.+...++..+++++.+-
T Consensus       229 alcgk~evvr~ll~~gin~h~~n~~~qtaldil  261 (854)
T KOG0507|consen  229 ALCGKAEVVRFLLEIGINTHIKNQHGQTALDII  261 (854)
T ss_pred             hhcCcchhhhHHHhhccccccccccchHHHHHH
Confidence            999999999999999999888887776665443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=1.6e-18  Score=146.59  Aligned_cols=143  Identities=22%  Similarity=0.092  Sum_probs=120.5

Q ss_pred             HHHHHHHcCCcHHHHHHHHHcCCC-CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCC
Q 010851           53 PLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (499)
Q Consensus        53 pLh~Aa~~~g~~~~v~~Ll~~ga~-~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~  131 (499)
                      -+.+|+.. +....|+.||+..++ +|.+  |.+|+||||.|+.+||.+||+.|+..|++++.+...|+||||-|+..++
T Consensus        66 l~lwaae~-nrl~eV~~lL~e~an~vNtr--D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEK-NRLTEVQRLLSEKANHVNTR--DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhh-ccHHHHHHHHHhcccccccc--ccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            46788887 889999999987766 7887  8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcccccccccccccCCCHHHHHhhhc-CCHHHHHHHH-hcCCCCCCCCcccccccCccccccCh
Q 010851          132 INVVRAIESHICYFCGWLREFYGPSFLEALAPQL-MSRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDVQP  201 (499)
Q Consensus       132 ~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~-~~~~~~~~Ll-~~ga~~~~~~~~~~~~l~~~~~~~~~  201 (499)
                      .+++.+|+++|+|++  .......|||| +|+.. +....+.+|+ ..+.+...++...++++.++-+.+..
T Consensus       143 ~~va~~LLqhgaDVn--A~t~g~ltpLh-laa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVN--AQTKGLLTPLH-LAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             hhHHHHHHhccCccc--ccccccchhhH-HhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            999999999999999  88888999999 66654 4455566655 45666666676777777766555443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.5e-18  Score=138.19  Aligned_cols=89  Identities=36%  Similarity=0.517  Sum_probs=72.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHH
Q 010851           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP  100 (499)
Q Consensus        21 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~  100 (499)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+.+ |+.+++++|+++|++++.+  |..|+||||+|+.+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAEN-GNLEIVKLLLENGADINSQ--DKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHT-TTHHHHHHHHHTTTCTT-B--STTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHc-CCHHHHHHHHHhccccccc--CCCCCCHHHHHHHcCCHH
Confidence            7888888888888888888877765    78888888887 8888888888888888887  778888888888888888


Q ss_pred             HHHHHHHCCCCCcccC
Q 010851          101 TVRLLLSCGANALVRN  116 (499)
Q Consensus       101 ~v~~Ll~~ga~~~~~d  116 (499)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            8888888888887665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=7.1e-18  Score=142.42  Aligned_cols=125  Identities=34%  Similarity=0.522  Sum_probs=107.0

Q ss_pred             ccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHH
Q 010851           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (499)
Q Consensus        12 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~   91 (499)
                      .+|.+|.||||+|+..|+.+++++|++++.+.+..+..|.||||+|+.. +..+++++|+++|++++..  +..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~--~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEKGADVNAR--DKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCCCCHHH
Confidence            3467788999999999988899999988888788888888999998887 7788888888888888877  678888999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Q 010851           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  139 (499)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  139 (499)
                      +|+..++.+++++|++.|.+++..+..|.|||++|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            998888888899988888888888888888888888888888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.76  E-value=6.6e-19  Score=184.00  Aligned_cols=228  Identities=23%  Similarity=0.200  Sum_probs=188.0

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      ..+-+|+|-.|+..|+-|+|++|+.+|+++..+|..|.+||.+|+-. ||..+|+.|+++.+++..+. |+.+.|+|-+|
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata-gh~tvV~~llk~ha~veaQs-drtkdt~lSla  831 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA-GHITVVQDLLKAHADVEAQS-DRTKDTMLSLA  831 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc-CchHHHHHHHhhhhhhhhhc-ccccCceEEEe
Confidence            34557999999999999999999999999999999999999999975 99999999999999999985 89999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHH
Q 010851           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~  173 (499)
                      +..|+.++|++||.+|++-..++-..+|||.+|...|.++||++|+.+|++++...-.+.|-.||+ +|..+++....+.
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm-latmngh~~at~~  910 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM-LATMNGHQAATLS  910 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh-hhhhccccHHHHH
Confidence            999999999999999999999999999999999999999999999999999995555788999999 9999999999999


Q ss_pred             HHhcCCCCCCCCc-ccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh-CCCCHHHHHHH
Q 010851          174 VIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA-NEGDKHQLQWL  251 (499)
Q Consensus       174 Ll~~ga~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~-~~~~~~~l~~~  251 (499)
                      |++.|.|+|..-. ...+++-.+.-.+....+..|+..          ...+..+-+.|.|||+-++. ..-+...++.-
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~----------~anvehRaktgltplme~AsgGyvdvg~~li~  980 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAA----------QANVEHRAKTGLTPLMEMASGGYVDVGNLLIA  980 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcchHHHHHHHH----------hhhhhhhcccCCcccchhhcCCccccchhhhh
Confidence            9999999986432 334444444434444444433322          22356677788899987774 22344444444


Q ss_pred             HHH
Q 010851          252 DNA  254 (499)
Q Consensus       252 ~~~  254 (499)
                      .++
T Consensus       981 ~ga  983 (2131)
T KOG4369|consen  981 AGA  983 (2131)
T ss_pred             ccc
Confidence            433

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.75  E-value=1.2e-18  Score=182.05  Aligned_cols=222  Identities=19%  Similarity=0.178  Sum_probs=169.0

Q ss_pred             ccccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCC
Q 010851            5 LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG   83 (499)
Q Consensus         5 l~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d   83 (499)
                      .++.|++.+|+.|.+||.+|+-.||..+|+.|+++.++++.. |..+.|+|-+||. +|+.++|++||.+|++-..+  +
T Consensus       778 ~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs-ggr~~vvelLl~~gankehr--n  854 (2131)
T KOG4369|consen  778 VRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS-GGRTRVVELLLNAGANKEHR--N  854 (2131)
T ss_pred             HhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC-CCcchHHHHHHHhhcccccc--c
Confidence            356889999999999999999999999999999988888754 5678889988886 48888888888888887777  6


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC--CCCCCHHHHHHHcCCHHHHHHHHHccccccc--------------
Q 010851           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--DDCHTALGVARIKGHINVVRAIESHICYFCG--------------  147 (499)
Q Consensus        84 ~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d--~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~--------------  147 (499)
                      ....|||-+|...|..++|++||.+|++++.+.  +.|..||++|..+||-+.++.|++.|-|+|.              
T Consensus       855 vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~  934 (2131)
T KOG4369|consen  855 VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLAL  934 (2131)
T ss_pred             hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecc
Confidence            677888888888888888888888887776654  5677888888887777777777777766652              


Q ss_pred             ------------------ccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCc--ccccccCccccccChHHHHHH
Q 010851          148 ------------------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPL--RFELVIYPSLQDVQPRAVIAL  207 (499)
Q Consensus       148 ------------------~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~--~~~~~l~~~~~~~~~~~~~~l  207 (499)
                                        ..+-+.|.|||+ -++..|.+++-++||..|+|.+..+.  ...+++-+.+..++.+-+.. 
T Consensus       935 fqgr~evv~lLLa~~anvehRaktgltplm-e~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~- 1012 (2131)
T KOG4369|consen  935 FQGRPEVVFLLLAAQANVEHRAKTGLTPLM-EMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPK- 1012 (2131)
T ss_pred             ccCcchHHHHHHHHhhhhhhhcccCCcccc-hhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHH-
Confidence                              134567888888 78888888888888888888887654  23445555555555433333 


Q ss_pred             HHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          208 WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                               ++..++.+.+.|++|.|+|-+|+.
T Consensus      1013 ---------lln~~atv~v~NkkG~T~Lwla~~ 1036 (2131)
T KOG4369|consen 1013 ---------LLNGDATVRVPNKKGCTVLWLASA 1036 (2131)
T ss_pred             ---------hhCCccceecccCCCCcccchhcc
Confidence                     222456688899999999877763

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=6.1e-17  Score=136.65  Aligned_cols=125  Identities=35%  Similarity=0.475  Sum_probs=117.1

Q ss_pred             ccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHH
Q 010851           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (499)
Q Consensus        45 ~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~  124 (499)
                      .+|.+|.||||+|+.. ++.+++++|++++.+.+..  +..|.||||+|+..+..+++++|++.|++++..+..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~-~~~~~i~~li~~~~~~~~~--~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASN-GHLEVVKLLLENGADVNAK--DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            3567899999999998 9999999999999998777  889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHH
Q 010851          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (499)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll  175 (499)
                      +|+..++.+++++|++++.+++  ..+..|.|+++ +|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLH-LAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCHHHHHHhC
Confidence            9999999999999999998888  78899999999 899889999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=2e-17  Score=131.76  Aligned_cols=86  Identities=35%  Similarity=0.470  Sum_probs=76.3

Q ss_pred             HHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010851           54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  133 (499)
Q Consensus        54 Lh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~  133 (499)
                      ||+||+. |+.+++++|++.+.+++.      |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus         1 L~~A~~~-~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQN-GNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHT-TTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHc-CCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            7899987 889999999998877763      778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcccccc
Q 010851          134 VVRAIESHICYFC  146 (499)
Q Consensus       134 ~v~~Ll~~g~~~~  146 (499)
                      ++++|+++|++++
T Consensus        74 ~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   74 IVKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHHTTT-TT
T ss_pred             HHHHHHHcCCCCC
Confidence            9999999999887

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=5.8e-17  Score=167.39  Aligned_cols=166  Identities=20%  Similarity=0.251  Sum_probs=143.5

Q ss_pred             CccccCCCchHHHHHHHH---cCCHHHHHHHHHcCCC-Cc--c--cCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCcc
Q 010851            9 NQHQQRQSKDELLYQWVI---AGDVDAIRALRSQGAS-LE--W--MDKEGKTPLIVACMDSGLINVAKTLIELGANINAY   80 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~---~g~~~~v~~Ll~~g~~-~~--~--~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~   80 (499)
                      +.+.+-..|+|.||.|..   .++.++++.||+.-.. +|  .  ....|+||||+|+.+ .+.++|++|++.|||++.+
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~-~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVN-RDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHh-ccHHHHHHHHHcCCchhhH
Confidence            455667789999999997   4566899999985321 11  1  124799999999998 8899999999999999875


Q ss_pred             C------C-CC--------------CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Q 010851           81 R------P-GG--------------RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  139 (499)
Q Consensus        81 ~------~-d~--------------~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  139 (499)
                      -      + |.              .|..||-+|+--++.+++++|+++|||++.+|..|+|.||..+..-..++..+++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence            1      0 11              2778999999999999999999999999999999999999999998899999999


Q ss_pred             Hcccc--cccccccccCCCHHHHHhhhcCCHHHHHHHHhcC
Q 010851          140 SHICY--FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (499)
Q Consensus       140 ~~g~~--~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~g  178 (499)
                      ++|++  ..  .+|..|.|||. +|++.|..++.+.+++..
T Consensus       294 ~~ga~~l~~--v~N~qgLTPLt-LAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  294 ELGANALEH--VRNNQGLTPLT-LAAKLGKKEMFQHILERR  331 (782)
T ss_pred             hcCCCcccc--ccccCCCChHH-HHHHhhhHHHHHHHHHhh
Confidence            99998  66  89999999999 999999999999999984

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=1e-15  Score=143.35  Aligned_cols=129  Identities=29%  Similarity=0.362  Sum_probs=97.0

Q ss_pred             cccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCccc
Q 010851           44 EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL-----EPTVRLLLSCGA---NALVR  115 (499)
Q Consensus        44 ~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~-----~~~v~~Ll~~ga---~~~~~  115 (499)
                      ...+..+.+++|+++.. +..+++++|+..|++++.+  +..|.||||+|+..++     .+++++|++.|+   +.+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASK-GDDKIVKLLLASGADVNAK--DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHc-CcHHHHHHHHHcCCCcccc--cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            34455677777777776 7777777777777777776  7777777777777777     777777777777   44555


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcC
Q 010851          116 NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (499)
Q Consensus       116 d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~g  178 (499)
                      |..|.||||+|+..|+.+++++|++.|++++  .++..|.|+++ .|...++.++++.++..+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALD-PAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchh-hhcccchHHHHHHHHhcC
Confidence            7777777777777777777777777777777  66777777777 777777777777777765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.65  E-value=6.1e-16  Score=117.23  Aligned_cols=103  Identities=29%  Similarity=0.388  Sum_probs=87.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g   97 (499)
                      +.-+.|++++|..+-|+.....|.++|..= .|++|||||+-. |+.+++++|+..|++++.+  |+.|.|||.-|+..|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~-GQl~ilefli~iGA~i~~k--DKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADY-GQLSILEFLISIGANIQDK--DKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhc-chHHHHHHHHHhccccCCc--cccCCcHHHHHHHHh
Confidence            345788999999999999988888887653 789999999988 8899999999999999887  889999999999999


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCCHHH
Q 010851           98 LEPTVRLLLSCGANALVRNDDCHTALG  124 (499)
Q Consensus        98 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~  124 (499)
                      |.++|++||+.|++-..+..+|.+.+.
T Consensus        79 H~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             hHHHHHHHHHcCcccceeCCCchhHHh
Confidence            999999999999988888888866543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.62  E-value=1.7e-15  Score=156.66  Aligned_cols=125  Identities=26%  Similarity=0.295  Sum_probs=116.4

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccc---------CC--------------CCChHHHHHHHcCCcHHHHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWM---------DK--------------EGKTPLIVACMDSGLINVAKTL   70 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~---------d~--------------~g~TpLh~Aa~~~g~~~~v~~L   70 (499)
                      .-.|.||||+|+.+.+.++|++|++.||||+.+         |.              .|+.||-+||.. ++.|++++|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~-nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT-NQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHc-CCHHHHHHH
Confidence            346999999999999999999999999999753         11              367899999987 999999999


Q ss_pred             HHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           71 IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN--ALVRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        71 l~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      +++|+|++.+  |..|+|.||..+..-..++..++|++|++  ...+|..|.|||.+|+..|..++.+.+++.
T Consensus       260 l~~gAd~~aq--DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGADPNAQ--DSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCCCcc--ccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999  89999999999999999999999999999  889999999999999999999999999998

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.61  E-value=1.5e-14  Score=135.26  Aligned_cols=132  Identities=34%  Similarity=0.392  Sum_probs=121.6

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCc-----HHHHHHHHHcCC---CCCc
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-----INVAKTLIELGA---NINA   79 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~-----~~~v~~Ll~~ga---~~~~   79 (499)
                      ......+..+.+++|+++..+..+++++|+..|++++.+|..|.||||+|+.. ++     .+++++|++.|+   ..+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHcCCCCCCccc
Confidence            34445677789999999999999999999999999999999999999999997 88     999999999999   5555


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010851           80 YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (499)
Q Consensus        80 ~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  142 (499)
                      +  |..|+||||+|+..|+.+++++|++.|++++.++..|.|+|++|+..++.++++.|+..+
T Consensus       143 ~--~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 R--DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             c--CCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            5  889999999999999999999999999999999999999999999999999999999976

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=6.3e-15  Score=111.74  Aligned_cols=102  Identities=26%  Similarity=0.292  Sum_probs=93.5

Q ss_pred             hHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCC
Q 010851           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (499)
Q Consensus        52 TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~  131 (499)
                      --++|++++ |.++-|+..+..|-|+|..   ..|++|||+|+-.|..+++++|+..|++++.+|+.|.|||.-|+..||
T Consensus         4 ~~~~W~vkN-G~~DeVk~~v~~g~nVn~~---~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKN-GEIDEVKQSVNEGLNVNEI---YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhcc-CcHHHHHHHHHccccHHHH---hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhh
Confidence            346788987 8899999999999888865   489999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcccccccccccccCCCHHH
Q 010851          132 INVVRAIESHICYFCGWLREFYGPSFLE  159 (499)
Q Consensus       132 ~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh  159 (499)
                      .++|++|+++|++..  .+..+|.+.+.
T Consensus        80 ~~cVklLL~~GAdrt--~~~PdG~~~~e  105 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRT--IHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHHcCcccc--eeCCCchhHHh
Confidence            999999999999988  88888988776

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.56  E-value=2.5e-14  Score=130.57  Aligned_cols=124  Identities=31%  Similarity=0.364  Sum_probs=115.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~   95 (499)
                      .-..+|..++..|+.+-...||+---++|..|..|.|+|..|+.+ |+.+++++||++|+|+|... +..+.||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAayk-Gnl~~v~lll~~gaDvN~~q-hg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYK-GNLTLVELLLELGADVNDKQ-HGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhc-CcHHHHHHHHHhCCCcCccc-ccccccHHHHHHH
Confidence            346899999999999999999997667999999999999999998 99999999999999999873 7889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      .|+.++.++|++.|+.+...|.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999999999999999999999999999999877544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=3.6e-14  Score=153.22  Aligned_cols=106  Identities=32%  Similarity=0.432  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCC
Q 010851           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (499)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~   98 (499)
                      ..|+.|+..|+.+.|+.|+++|+++|.+|..|+||||+|+.+ |+.+++++|+++|++++.+  |..|.||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~-g~~eiv~~LL~~Gadvn~~--d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL--DKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCc
Confidence            458999999999999999999999999999999999999998 9999999999999999998  8899999999999999


Q ss_pred             HHHHHHHHHC-------CCCCcccCCCCCCHHHHHH
Q 010851           99 EPTVRLLLSC-------GANALVRNDDCHTALGVAR  127 (499)
Q Consensus        99 ~~~v~~Ll~~-------ga~~~~~d~~g~tpL~~A~  127 (499)
                      .+++++|+++       |++++..+..|.+|+..+.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999998       8888888888888876654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=4.4e-14  Score=152.56  Aligned_cols=102  Identities=29%  Similarity=0.301  Sum_probs=95.0

Q ss_pred             HHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCH
Q 010851           53 PLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI  132 (499)
Q Consensus        53 pLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~  132 (499)
                      .||.|+.. |+.+++++|+++|+++|.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus        85 ~L~~aa~~-G~~~~vk~LL~~Gadin~~--d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAAS-GDAVGARILLTGGADPNCR--DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            58899987 9999999999999999998  88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-------ccccccccccccCCCHHH
Q 010851          133 NVVRAIESH-------ICYFCGWLREFYGPSFLE  159 (499)
Q Consensus       133 ~~v~~Ll~~-------g~~~~~~~~~~~g~t~Lh  159 (499)
                      +++++|+++       |++.+  ..+..|.+++.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~  193 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAK--PDSFTGKPPSL  193 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCC--ccccCCCCccc
Confidence            999999999       77776  67777777665

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=3.8e-15  Score=99.50  Aligned_cols=54  Identities=41%  Similarity=0.976  Sum_probs=50.5

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccceeEeeeC
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRLYTV  499 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~~~~~  499 (499)
                      .+|.||+|.+.+.|+.-|||++.|++|..++++. ...||+||++|..+|+.|++
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s   62 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS   62 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence            5999999999999999999999999999999884 67899999999999999874

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=2.4e-13  Score=133.41  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=70.9

Q ss_pred             HHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHH
Q 010851           57 ACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR  136 (499)
Q Consensus        57 Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~  136 (499)
                      |+.. |.+++|+-.+..--|+..-  +..|.|+||-|+-.||.+||++|++.|+++|..|.+||||||+|+..+++.+++
T Consensus       557 aaLe-GEldlVq~~i~ev~DpSqp--NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  557 AALE-GELDLVQRIIYEVTDPSQP--NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhc-chHHHHHHHHHhhcCCCCC--CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            4444 6666666666655555554  556666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcccccccccccccCCCHHHHHh-hhcCCHHHHHHHHh
Q 010851          137 AIESHICYFCGWLREFYGPSFLEALA-PQLMSRKIWVVVIP  176 (499)
Q Consensus       137 ~Ll~~g~~~~~~~~~~~g~t~Lh~~A-~~~~~~~~~~~Ll~  176 (499)
                      .|++.|+-+. ...-.++.|+...+- -..|..+|.+||..
T Consensus       634 qLVe~Gaavf-AsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVF-ASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEE-eeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            6666666554 234455666665221 23455666666653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=7e-14  Score=100.35  Aligned_cols=54  Identities=41%  Similarity=0.486  Sum_probs=16.4

Q ss_pred             HHcC-CCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHH
Q 010851           37 RSQG-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        37 l~~g-~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      |++| .+++.+|..|+||||+||.+ |+.+++++|++.|++++.+  |..|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~-g~~~~v~~Ll~~g~d~~~~--d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARY-GHSEVVRLLLQNGADPNAK--DKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHH-T-HHHHHHHHHCT--TT-----TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHc-CcHHHHHHHHHCcCCCCCC--cCCCCCHHHhC
Confidence            3444 44444444444444444444 4444444444444444444  44444444443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=7.6e-14  Score=100.18  Aligned_cols=55  Identities=45%  Similarity=0.631  Sum_probs=29.2

Q ss_pred             HHHcC-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHH
Q 010851           70 LIELG-ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (499)
Q Consensus        70 Ll~~g-a~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A  126 (499)
                      ||++| ++++.+  |..|+||||+|+.+|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~--d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ--DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCc--CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 777777  78888888888888888888888888888888888888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=2.1e-13  Score=97.32  Aligned_cols=54  Identities=28%  Similarity=0.449  Sum_probs=28.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHH
Q 010851           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI   71 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll   71 (499)
                      |.|+||+|++.|+.+++++|+++|+++|.+|.+|+||||+|+.+ |+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~-g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKN-GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHT-T-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-cCHHHHHHHC
Confidence            45556666666666666666655555555555566666666554 5555555554

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=5.8e-13  Score=130.76  Aligned_cols=122  Identities=28%  Similarity=0.330  Sum_probs=106.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~   95 (499)
                      +-.-.|.-|+..|.+++|+..+..--|+...|..|.||||-|+.. ||.+||++||+.|+|+|..  |.+||||||+|+.
T Consensus       549 nPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa-ghyeIVkFLi~~ganVNa~--DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  549 NPLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA-GHYEIVKFLIEFGANVNAA--DSDGWTPLHCAAS  625 (752)
T ss_pred             chHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc-chhHHHHHHHhcCCcccCc--cCCCCchhhhhhh
Confidence            334677889999999999999998888989999999999999986 9999999999999999999  8999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCcccC-CCCCCHHHHHH--HcCCHHHHHHHHH
Q 010851           96 RGLEPTVRLLLSCGANALVRN-DDCHTALGVAR--IKGHINVVRAIES  140 (499)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~--~~g~~~~v~~Ll~  140 (499)
                      .++..+++.|++.|+-+.... .++.|+..-+-  +.|...|.+||-.
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999999998876543 67788876543  4578888888854

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=4.6e-13  Score=95.50  Aligned_cols=53  Identities=40%  Similarity=0.596  Sum_probs=23.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI  138 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~L  138 (499)
                      |+||||+|++.|+.+++++|++.|++++.+|.+|+||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34455555555555555555555555554455555555555555555555444

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.41  E-value=1.2e-12  Score=119.76  Aligned_cols=119  Identities=24%  Similarity=0.231  Sum_probs=108.7

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc-cCCCCCCHHHHHHH
Q 010851           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALV-RNDDCHTALGVARI  128 (499)
Q Consensus        50 g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~  128 (499)
                      -..+|.-+.-+ |..+-+..||.---++|.+  |..|+|+|+.|+.+|+.++|++||+.|+|+|. ++..++||||+|+.
T Consensus        12 ~~~~Lle~i~K-ndt~~a~~LLs~vr~vn~~--D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDK-NDTEAALALLSTVRQVNQR--DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHcc-CcHHHHHHHHHHhhhhhcc--CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            46789888887 8889999999886778988  88999999999999999999999999999975 56889999999999


Q ss_pred             cCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHH
Q 010851          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (499)
Q Consensus       129 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~L  174 (499)
                      .|+.++.++|++.|+...  ..|.-|+|+-. .|+-.|+.+++.++
T Consensus        89 SGn~dvcrllldaGa~~~--~vNsvgrTAaq-mAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMY--LVNSVGRTAAQ-MAAFVGHHECVAII  131 (396)
T ss_pred             cCCchHHHHHHhccCccc--cccchhhhHHH-HHHHhcchHHHHHH
Confidence            999999999999999988  89999999999 89999999988755

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.21  E-value=8.5e-12  Score=87.08  Aligned_cols=49  Identities=37%  Similarity=0.956  Sum_probs=42.4

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccce
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  493 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  493 (499)
                      +..|.||++...+++++||||.++|..|+.++...+..||+||++|.++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            3689999999999999999999559999999988788999999999764

...

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.3e-11  Score=111.20  Aligned_cols=51  Identities=37%  Similarity=0.959  Sum_probs=48.9

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  499 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  499 (499)
                      ...|.||+|.+.+.+|++|||++.|..|.++|..    ||+||+.|.++++||++
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~e----CPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNE----CPICRQYIVRVVRIFRV  350 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccccc----CchHHHHHHHHHhhhcC
Confidence            6799999999999999999999999999999986    99999999999999986

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.3e-10  Score=110.67  Aligned_cols=56  Identities=29%  Similarity=0.866  Sum_probs=51.5

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  498 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  498 (499)
                      +...+|+||+...++.+++||+|.|+|..|++.+.-+...||+||++|...+.||.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            45579999999999999999999999999999999777789999999999998874

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.91  E-value=6.8e-10  Score=114.76  Aligned_cols=95  Identities=20%  Similarity=0.249  Sum_probs=82.6

Q ss_pred             HHHHHHH-cCCC-CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 010851           32 AIRALRS-QGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG  109 (499)
Q Consensus        32 ~v~~Ll~-~g~~-~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  109 (499)
                      -++-++. ++.+ .|.+|..|+|+||+|+.. |..++++.||++|++++.+| ...|+||||.|+.+|+++++-+||.+|
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~-~k~~~l~wLlqhGidv~vqD-~ESG~taLHRaiyyG~idca~lLL~~g  109 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSE-NKNSFLRWLLQHGIDVFVQD-EESGYTALHRAIYYGNIDCASLLLSKG  109 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeecc-chhHHHHHHHhcCceeeecc-ccccchHhhHhhhhchHHHHHHHHhcC
Confidence            3455554 3322 678999999999999987 88999999999999999996 568999999999999999999999999


Q ss_pred             CCCcccCCCCCCHHHHHHH
Q 010851          110 ANALVRNDDCHTALGVARI  128 (499)
Q Consensus       110 a~~~~~d~~g~tpL~~A~~  128 (499)
                      +.+.++|.+|..||.+-.+
T Consensus       110 ~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  110 RSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             CceEEecccCCCHHHHHhh
Confidence            9999999999999988766

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.91  E-value=1.3e-09  Score=106.33  Aligned_cols=90  Identities=28%  Similarity=0.323  Sum_probs=50.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCCCCcHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAA   94 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpL~~A~   94 (499)
                      ++...+++|++.|++..++.+.-.|.|++.+|.+.+|+||+||.. |+.+++++||+. +.+++.+  |++|+|||--|.
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE-G~v~v~kfl~~~~kv~~~~k--DRw~rtPlDdA~  581 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE-GHVEVVKFLLNACKVDPDPK--DRWGRTPLDDAK  581 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc-CceeHHHHHHHHHcCCCChh--hccCCCcchHhH
Confidence            344455555555555555555555555555555555555555554 555555555543 4455555  555555555555


Q ss_pred             HcCCHHHHHHHHHC
Q 010851           95 KRGLEPTVRLLLSC  108 (499)
Q Consensus        95 ~~g~~~~v~~Ll~~  108 (499)
                      ..+|.+++++|-+.
T Consensus       582 ~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEA  595 (622)
T ss_pred             hcCcHHHHHHHHHH
Confidence            55555555555543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.90  E-value=6.2e-09  Score=102.08  Aligned_cols=101  Identities=29%  Similarity=0.384  Sum_probs=86.8

Q ss_pred             CcccCCCCChH------HHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC
Q 010851           43 LEWMDKEGKTP------LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN  116 (499)
Q Consensus        43 ~~~~d~~g~Tp------Lh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d  116 (499)
                      +..+|.+|.|+      ||-.++. |+.+..-.||..|+++|+.++ ..|.||||.|++.|..--+++|+-+|||++..|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt-~nlet~LRll~lGA~~N~~hp-ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRT-GNLETCLRLLSLGAQANFFHP-EKGNTPLHVAAKAGQILQAELLAVYGADPGAQD  197 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhc-ccHHHHHHHHHcccccCCCCc-ccCCchhHHHHhccchhhhhHHhhccCCCCCCC
Confidence            34567777665      7888876 889999999999999999874 579999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 010851          117 DDCHTALGVARIKGHINVVRAIESHICYF  145 (499)
Q Consensus       117 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  145 (499)
                      .+|+||+.+|-..||-++.+.|++...++
T Consensus       198 ~~GmtP~~~AR~~gH~~laeRl~e~~y~v  226 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHHELAERLVEIQYEL  226 (669)
T ss_pred             CCCCcHHHHHHhcCchHHHHHHHHHHHHH
Confidence            99999999999999999988888754443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.90  E-value=6.5e-09  Score=101.94  Aligned_cols=94  Identities=28%  Similarity=0.312  Sum_probs=84.8

Q ss_pred             ccCCCchH------HHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCC
Q 010851           12 QQRQSKDE------LLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (499)
Q Consensus        12 ~~d~~g~t------~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~   84 (499)
                      -+|.+|-+      -||..++.|+.++.-.||..|+++|..+. .|.||||.|++. |+..-+++|+-+|+|++..  |.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~-Gq~~Q~ElL~vYGAD~~a~--d~  198 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKA-GQILQAELLAVYGADPGAQ--DS  198 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhc-cchhhhhHHhhccCCCCCC--CC
Confidence            35666544      59999999999999999999999999875 699999999998 9999999999999999998  89


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC
Q 010851           85 RGGTPLHHAAKRGLEPTVRLLLSC  108 (499)
Q Consensus        85 ~g~TpL~~A~~~g~~~~v~~Ll~~  108 (499)
                      +|+||+.+|-..||-++.+.|++.
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHHH
Confidence            999999999999999998888864

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.89  E-value=1.9e-09  Score=94.98  Aligned_cols=55  Identities=25%  Similarity=0.785  Sum_probs=45.7

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc----------------CCcccccccccc--ceeEee
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK----------------KGDCPVCRTKIN--QVIRLY  497 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----------------~~~Cp~Cr~~i~--~~~~~~  497 (499)
                      .++...|.||++...++++.+|||.| |+.|+.+|...                ...||+||.+|.  ..++||
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            34557999999999999999999999 99999987531                247999999996  466666

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.5e-09  Score=97.24  Aligned_cols=55  Identities=33%  Similarity=0.837  Sum_probs=48.4

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc---CCcccccccccc--ceeEee
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN--QVIRLY  497 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~Cp~Cr~~i~--~~~~~~  497 (499)
                      ++..-.|.||+|...++|+..|||.| |+.|+.+|...   ++.||+|+..|.  .+|.||
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            45557999999999999999999999 99999999875   457999999985  688888

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.9e-09  Score=99.48  Aligned_cols=48  Identities=35%  Similarity=0.938  Sum_probs=44.3

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ....|.+|+|...++...||||.| |+.|+..|...+..||+||..+..
T Consensus       238 a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCC
Confidence            336999999999999999999999 999999999988899999999863

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.80  E-value=2.7e-09  Score=110.48  Aligned_cols=83  Identities=22%  Similarity=0.213  Sum_probs=78.2

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCc
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   88 (499)
                      .|.+|.-|+|+||+|+..|..+++++||++|++++.+|. .|+||||-|... |+++++-+||.+|+.+..+  |++|..
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyy-G~idca~lLL~~g~SL~i~--Dkegls  121 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYY-GNIDCASLLLSKGRSLRIK--DKEGLS  121 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhh-chHHHHHHHHhcCCceEEe--cccCCC
Confidence            466899999999999999999999999999999999996 699999999998 9999999999999999999  899999


Q ss_pred             HHHHHHH
Q 010851           89 PLHHAAK   95 (499)
Q Consensus        89 pL~~A~~   95 (499)
                      ||.+-++
T Consensus       122 plq~~~r  128 (1267)
T KOG0783|consen  122 PLQFLSR  128 (1267)
T ss_pred             HHHHHhh
Confidence            9988776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.78  E-value=2.6e-08  Score=99.19  Aligned_cols=118  Identities=21%  Similarity=0.266  Sum_probs=87.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCC--CCccCCCCCCCcHHHHHHHcCC
Q 010851           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN--INAYRPGGRGGTPLHHAAKRGL   98 (499)
Q Consensus        21 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~--~~~~~~d~~g~TpL~~A~~~g~   98 (499)
                      |..|+..+++--+..+...|.++-.++.+..|.||||+.. |+.++|++||++|..  ++..  |..|.|+||-|+-.++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~t-g~~eivkyildh~p~elld~~--de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKT-GNGEIVKYILDHGPSELLDMA--DETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhc-CChHHHHHHHhcCCHHHHHHH--hhhhhHHHHHHHHhcc
Confidence            4556666665555555566777777777778888888876 778888888888764  4444  6678888888888888


Q ss_pred             HHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        99 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      -.+.++|++.|+.+...|..|.||-..|-+.|+.++..||-.+
T Consensus       947 r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            7888888888888877788888888888888888887777654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.73  E-value=2.8e-08  Score=99.38  Aligned_cols=60  Identities=32%  Similarity=0.437  Sum_probs=30.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010851           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC  143 (499)
Q Consensus        84 ~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  143 (499)
                      .+|+|+||+|++.|+..+.++|+-+|+|+..+|..|+|+|.||-+.|.-+++..|+.+|.
T Consensus       659 ~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  659 GDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             CCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            344555555555555555555555555555555555555555555555555555555543

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=2e-08  Score=86.00  Aligned_cols=51  Identities=35%  Similarity=0.876  Sum_probs=43.9

Q ss_pred             cccccccccCCceE--EeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010851          446 SSCVICWEAPVEGA--CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  497 (499)
Q Consensus       446 ~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~  497 (499)
                      ..|+|||+.....+  ...|||.| |..|++...+...+||+||+.|.  ++++||
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~  186 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY  186 (187)
T ss_pred             cCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence            69999999875554  46999999 99999999888789999998875  688887

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2.3e-08  Score=61.29  Aligned_cols=28  Identities=46%  Similarity=0.767  Sum_probs=11.9

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHHcCCCCC
Q 010851           50 GKTPLIVACMDSGLINVAKTLIELGANIN   78 (499)
Q Consensus        50 g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~   78 (499)
                      |+||||+||.+ |+.+++++||++|+|+|
T Consensus         2 G~T~Lh~A~~~-g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASN-GNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHh-CCHHHHHHHHHcCCCCC
Confidence            34444444443 44444444444444443

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.69  E-value=9.6e-09  Score=67.45  Aligned_cols=38  Identities=37%  Similarity=0.983  Sum_probs=33.1

Q ss_pred             cccccccCCce-EEeCCCCchhhHHhHHHHhccCCccccc
Q 010851          448 CVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVC  486 (499)
Q Consensus       448 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~Cp~C  486 (499)
                      |+||++...++ ++++|||.| |..|+.++...+.+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence            89999999999 688999999 999999988877899988

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2.3e-08  Score=61.25  Aligned_cols=28  Identities=46%  Similarity=0.614  Sum_probs=17.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANAL  113 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  113 (499)
                      |+||||+|++.|+.++|++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666666654

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.68  E-value=1.1e-08  Score=67.88  Aligned_cols=38  Identities=37%  Similarity=0.905  Sum_probs=30.6

Q ss_pred             cccccccCCceEEeCCCCchhhHHhHHHHhccC----Cccccc
Q 010851          448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK----GDCPVC  486 (499)
Q Consensus       448 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~Cp~C  486 (499)
                      |+||++.+.+++.++|||.| |..|+.++++..    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999 999999998753    269987

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.68  E-value=1.5e-08  Score=93.62  Aligned_cols=52  Identities=37%  Similarity=0.813  Sum_probs=43.8

Q ss_pred             ccccccccccCCc--------eEEeCCCCchhhHHhHHHHhccCCccccccccccceeEee
Q 010851          445 SSSCVICWEAPVE--------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  497 (499)
Q Consensus       445 ~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~  497 (499)
                      ..+|+||++...+        +++.+|+|.| |..|+..|...+..||+||.++..+++..
T Consensus       174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~r  233 (238)
T PHA02929        174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKSR  233 (238)
T ss_pred             CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeeee
Confidence            3699999997543        3556899999 99999999888889999999999877653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.67  E-value=5e-08  Score=97.12  Aligned_cols=86  Identities=27%  Similarity=0.368  Sum_probs=51.1

Q ss_pred             HHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC
Q 010851           20 LLYQWVIAGDVDAIRALRS--QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (499)
Q Consensus        20 ~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g   97 (499)
                      |||+++.....+-+..++.  ....++.+|..|.||||+|+.. |+.+.++.|+.+|+++..+  ++.|++|||.|+..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L-g~~~~a~~Ll~a~Adv~~k--N~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL-GHVEAARILLSAGADVSIK--NNEGWSPLHEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHh-cCHHHHHHHHhcCCCcccc--ccccccHHHHHHHcC
Confidence            3666666655554444332  2234555666666666666665 6666666666666666666  666666666666666


Q ss_pred             CHHHHHHHHHC
Q 010851           98 LEPTVRLLLSC  108 (499)
Q Consensus        98 ~~~~v~~Ll~~  108 (499)
                      +.+++..+|.+
T Consensus       100 ~~q~i~~vlr~  110 (560)
T KOG0522|consen  100 NEQIITEVLRH  110 (560)
T ss_pred             CHHHHHHHHHH
Confidence            66665555543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=6.1e-09  Score=99.31  Aligned_cols=54  Identities=35%  Similarity=0.857  Sum_probs=48.8

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  499 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  499 (499)
                      ......|+||++.+.+.+++||||+++|..|.+.+.+    ||+||+.|...+++|+.
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~----CPvCR~rI~~~~k~y~~  355 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQ----CPVCRQRIRLVRKRYRS  355 (355)
T ss_pred             cCCCCceEEecCCccceeeecCCcEEEchHHHhhCCC----CchhHHHHHHHHHHhcC
Confidence            3444799999999999999999999999999999886    99999999999999863

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.67  E-value=2.4e-08  Score=97.62  Aligned_cols=93  Identities=20%  Similarity=0.231  Sum_probs=72.8

Q ss_pred             CCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCCHHHHH
Q 010851           48 KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALGVA  126 (499)
Q Consensus        48 ~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A  126 (499)
                      .++...++||++. |.+..++.+.-.|.|++.+  |-+.+|+||.|+..|+++++++|++. +.+++.+|..|+|||.-|
T Consensus       504 ~~~~i~~~~aa~~-GD~~alrRf~l~g~D~~~~--DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  504 NDTVINVMYAAKN-GDLSALRRFALQGMDLETK--DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccchhhhhhhhhc-CCHHHHHHHHHhccccccc--ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            4556778888876 7788888777788888877  67778888888888888888888875 577788888888888888


Q ss_pred             HHcCCHHHHHHHHHccc
Q 010851          127 RIKGHINVVRAIESHIC  143 (499)
Q Consensus       127 ~~~g~~~~v~~Ll~~g~  143 (499)
                      ...+|.+++++|-+...
T Consensus       581 ~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhcCcHHHHHHHHHHhc
Confidence            88888888888876543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.66  E-value=3.8e-08  Score=62.06  Aligned_cols=30  Identities=43%  Similarity=0.610  Sum_probs=13.6

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHHcCCCCCcc
Q 010851           50 GKTPLIVACMDSGLINVAKTLIELGANINAY   80 (499)
Q Consensus        50 g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~   80 (499)
                      |+||||+|+.+ |+.+++++|+++|++++.+
T Consensus         2 G~TpLh~A~~~-~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQR-GHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHT-TCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHH-HHHHHHHHHHHCcCCCCCC
Confidence            44444444443 4444444444444444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.65  E-value=5.2e-08  Score=97.05  Aligned_cols=98  Identities=23%  Similarity=0.261  Sum_probs=88.0

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      =+.-.++.+..+.||+|+..|+-++|++||++|..  ++..|..|.|+||-|+.. ++..+.++|++.|+.+...  |..
T Consensus       890 g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~-~~r~vc~~lvdagasl~kt--d~k  966 (1004)
T KOG0782|consen  890 GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ-RNRAVCQLLVDAGASLRKT--DSK  966 (1004)
T ss_pred             CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh-cchHHHHHHHhcchhheec--ccC
Confidence            34445788889999999999999999999999963  677889999999999987 8899999999999999988  899


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSC  108 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~  108 (499)
                      |.||-..|-..|..++..+|-..
T Consensus       967 g~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  967 GKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             CCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999998654

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.64  E-value=1.2e-08  Score=69.11  Aligned_cols=40  Identities=40%  Similarity=0.888  Sum_probs=35.1

Q ss_pred             ccccccccC---CceEEeCCCCchhhHHhHHHHhccCCcccccc
Q 010851          447 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR  487 (499)
Q Consensus       447 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr  487 (499)
                      .|+||++..   ..++.++|||.| |..|+..|.+.+..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence            799999876   467788999999 9999999998888999997

...

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.62  E-value=4.3e-08  Score=61.80  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDK   48 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~   48 (499)
                      +|.||||+|+..|+.+++++||++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.59  E-value=1e-07  Score=94.92  Aligned_cols=89  Identities=26%  Similarity=0.408  Sum_probs=74.0

Q ss_pred             hHHHHHHHcCCcHHHHHHHHH-cCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC
Q 010851           52 TPLIVACMDSGLINVAKTLIE-LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (499)
Q Consensus        52 TpLh~Aa~~~g~~~~v~~Ll~-~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g  130 (499)
                      -|||+++.......+.+.|+. .+..++.+  |..|.||||+|+..|+.+.++.|+.+|+++..+|..|++|||.|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~--D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRR--DPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccc--cCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcC
Confidence            459999987333344444443 34566766  788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcc
Q 010851          131 HINVVRAIESHI  142 (499)
Q Consensus       131 ~~~~v~~Ll~~g  142 (499)
                      +.+++..++.+.
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            999988888764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.59  E-value=2e-07  Score=98.13  Aligned_cols=123  Identities=16%  Similarity=0.096  Sum_probs=103.0

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcC----CCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQG----ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g----~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   89 (499)
                      ...+.--...|+.+|+.-.|+..++..    .++|..|.-|+++|++|..+ .+.|++++|++++..+  .       .+
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~~~~--g-------dA   91 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTSSEE--G-------DA   91 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc-ccHHHHHHHhcCcccc--c-------hH
Confidence            344566678899999999999999843    56889999999999999987 8899999999987655  2       48


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC----------cccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANA----------LVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~----------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  146 (499)
                      |.+|+..|..++|++|+.+-...          ...-..+.|||.+|+..++.||++.|+.+|+.+.
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            99999999999999999874332          1233467899999999999999999999998875

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.58  E-value=1.5e-07  Score=94.26  Aligned_cols=92  Identities=24%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCC----cccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhh
Q 010851           88 TPLHHAAKRGLEPTVRLLLSCGANA----LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAP  163 (499)
Q Consensus        88 TpL~~A~~~g~~~~v~~Ll~~ga~~----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~  163 (499)
                      .-|.-|+.......+-+||.+|...    ..-+.+|.|+||+|++.|++.+.++|+=+|+|+.  .+|..|+|+|. ||-
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~--~rda~g~t~l~-yar  702 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM--ARDAHGRTALF-YAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce--ecccCCchhhh-hHh
Confidence            3577788888888888999988543    2346788999999999999999999999999998  99999999999 999


Q ss_pred             hcCCHHHHHHHHhcCCCCC
Q 010851          164 QLMSRKIWVVVIPCGTANP  182 (499)
Q Consensus       164 ~~~~~~~~~~Ll~~ga~~~  182 (499)
                      +.+..+++.+|+.+|...+
T Consensus       703 ~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  703 QAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hcccHHHHHHHHHcCCCcc
Confidence            9999999999999998653

>PHA02926 zinc finger-like protein; Provisional

Probab=98.44  E-value=1.1e-07  Score=84.68  Aligned_cols=50  Identities=28%  Similarity=0.816  Sum_probs=39.9

Q ss_pred             ccccccccccCC---------ceEEeCCCCchhhHHhHHHHhccC------CccccccccccceeE
Q 010851          445 SSSCVICWEAPV---------EGACVPCGHMAGCMSCLSEIKAKK------GDCPVCRTKINQVIR  495 (499)
Q Consensus       445 ~~~C~iC~~~~~---------~~~~~pCgH~~~C~~C~~~~~~~~------~~Cp~Cr~~i~~~~~  495 (499)
                      +.+|.||+|...         -+++.+|+|.| |..|+..|...+      ..||+||..+...++
T Consensus       170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             CCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence            369999998742         25677999999 999999999743      359999999875554

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.36  E-value=3.4e-07  Score=61.73  Aligned_cols=41  Identities=39%  Similarity=0.972  Sum_probs=34.4

Q ss_pred             ccccccccC---CceEEeCCCCchhhHHhHHHHhccCCccccccc
Q 010851          447 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  488 (499)
Q Consensus       447 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~  488 (499)
                      .|.||++..   ..+.+++|||.| |..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence            488999887   457788999999 99999999844557999984

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.35  E-value=5.6e-07  Score=97.44  Aligned_cols=88  Identities=23%  Similarity=0.181  Sum_probs=57.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhh
Q 010851           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAP  163 (499)
Q Consensus        84 ~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~  163 (499)
                      ..|.|+||.|+..+..-++++||+.|+++|..|..|.||||.+...|+...+.+|+++|++.+  ..+.+|.++|+ +|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~--a~~~~~~~~l~-~a~  730 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN--AFDPDGKLPLD-IAM  730 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc--ccCccCcchhh-HHh
Confidence            356667777777776667777777777777777777777777777777777777777666666  66666777766 554


Q ss_pred             hcCCHHHHHHH
Q 010851          164 QLMSRKIWVVV  174 (499)
Q Consensus       164 ~~~~~~~~~~L  174 (499)
                      ...+.+++-+|
T Consensus       731 ~~~~~d~~~l~  741 (785)
T KOG0521|consen  731 EAANADIVLLL  741 (785)
T ss_pred             hhccccHHHHH
Confidence            44444444333

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.34  E-value=2.8e-07  Score=61.27  Aligned_cols=38  Identities=37%  Similarity=0.909  Sum_probs=34.2

Q ss_pred             cccccccCCceE-EeCCCCchhhHHhHHHHhc--cCCccccc
Q 010851          448 CVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA--KKGDCPVC  486 (499)
Q Consensus       448 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~--~~~~Cp~C  486 (499)
                      |.||++...+.+ +++|||.| |..|+.++.+  ....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence            889999999999 88999999 9999999888  34589988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.32  E-value=3.1e-07  Score=99.38  Aligned_cols=100  Identities=29%  Similarity=0.389  Sum_probs=86.3

Q ss_pred             HcCCCCcccC--CCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q 010851           38 SQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR  115 (499)
Q Consensus        38 ~~g~~~~~~d--~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~  115 (499)
                      .+++++|+.+  ..|.|+||.|+.. |..-++++||+.|+++|..  |..|+||||.+...|+...+.+|++.|++.+..
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~-~~~~~~e~ll~~ga~vn~~--d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~  718 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGT-GDSGAVELLLQNGADVNAL--DSKGRTPLHHATASGHTSIACLLLKRGADPNAF  718 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhcc-chHHHHHHHHhcCCcchhh--hccCCCcchhhhhhcccchhhhhcccccccccc
Confidence            3455566543  4689999999987 8899999999999999999  899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Q 010851          116 NDDCHTALGVARIKGHINVVRAIES  140 (499)
Q Consensus       116 d~~g~tpL~~A~~~g~~~~v~~Ll~  140 (499)
                      +.+|+++|++|....+.+++-+|.-
T Consensus       719 ~~~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  719 DPDGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             CccCcchhhHHhhhccccHHHHHhh
Confidence            9999999999988777776655543

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.31  E-value=4.7e-07  Score=61.31  Aligned_cols=43  Identities=44%  Similarity=0.990  Sum_probs=35.6

Q ss_pred             ccccccccCCceEEe-CCCCchhhHHhHHHHhcc-CCccccccccc
Q 010851          447 SCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKI  490 (499)
Q Consensus       447 ~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i  490 (499)
                      .|.||++...+.+.+ +|||.| |..|+..+... ...||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998555555 599999 99999998876 66899998754

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.29  E-value=2.7e-06  Score=89.81  Aligned_cols=127  Identities=22%  Similarity=0.172  Sum_probs=102.8

Q ss_pred             CCCChHHHHHHHcCCcHHHHHHHHHcC----CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHH
Q 010851           48 KEGKTPLIVACMDSGLINVAKTLIELG----ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL  123 (499)
Q Consensus        48 ~~g~TpLh~Aa~~~g~~~~v~~Ll~~g----a~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL  123 (499)
                      ..+.--...|+.+ |+.-.|+..++..    .++|.+  |.-|+++|++|+.+.+.+++++|++++...       ..+|
T Consensus        23 ~~~e~~fL~a~E~-gd~~~V~k~l~~~~~~~lninc~--d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdAL   92 (822)
T KOG3609|consen   23 NEGEKGFLLAHEN-GDVPLVAKALEYKAVSKLNINCR--DPLGRLALHIAIDNENLELQELLLDTSSEE-------GDAL   92 (822)
T ss_pred             chhhHHHHHHHHc-CChHHHHHHHHhccccccchhcc--ChHhhhceecccccccHHHHHHHhcCcccc-------chHH
Confidence            3455567889988 8888888888764    356666  889999999999999999999999987655       3589


Q ss_pred             HHHHHcCCHHHHHHHHHccccccc--------ccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCC
Q 010851          124 GVARIKGHINVVRAIESHICYFCG--------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP  185 (499)
Q Consensus       124 ~~A~~~g~~~~v~~Ll~~g~~~~~--------~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~  185 (499)
                      .+|+..|.+++|++|+.+......        ...-.-+.|||. +|+..+++||+++||.+|+.+...-
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli-LAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM-LAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH-HHHHhcchHHHHHHHHcCCCCCCCc
Confidence            999999999999999988644321        012245689999 9999999999999999999876543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.28  E-value=3.1e-06  Score=73.73  Aligned_cols=96  Identities=23%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             CCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccc
Q 010851           74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF  152 (499)
Q Consensus        74 ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  152 (499)
                      +.++|.+  |..||||||.|+..|..+.+.+|+.+| +.+...|..|.+++.+|-+.|+.++++.|.+...+-.......
T Consensus         2 e~~in~r--D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss   79 (223)
T KOG2384|consen    2 EGNINAR--DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSS   79 (223)
T ss_pred             CCCccch--hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCC
Confidence            4577877  788888888888888888888888888 8888888888888888888888888888887654433111223


Q ss_pred             cCCCHHHHHhhhcCCHHHHHHHHhcCC
Q 010851          153 YGPSFLEALAPQLMSRKIWVVVIPCGT  179 (499)
Q Consensus       153 ~g~t~Lh~~A~~~~~~~~~~~Ll~~ga  179 (499)
                      .+.+++.        .|+++..+.+..
T Consensus        80 ~~e~lfy--------CE~Cd~~ip~~~   98 (223)
T KOG2384|consen   80 RDEALFY--------CEVCDIYIPNSK   98 (223)
T ss_pred             CCCccch--------hhhhhhhccCCC
Confidence            3444443        355555555443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.24  E-value=1.2e-06  Score=94.22  Aligned_cols=125  Identities=24%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHcCCcHHHHHHHH-HcCCCCCccCCCCCCCcHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRGGTPL   90 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~TpL   90 (499)
                      ....|.+.||+++..++.-+++.+++- |......|.+|.-.+|+++.  ++.+.+-+|+ -.|..++++  |..|+|||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~--lg~ewA~ll~~~~~~ai~i~--D~~G~tpL  645 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA--LGYEWAFLPISADGVAIDIR--DRNGWTPL  645 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh--cCCceeEEEEeecccccccc--cCCCCccc
Confidence            445566666666666666666666663 55555556666666666442  4455554444 345666666  66666666


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCc------ccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           91 HHAAKRGLEPTVRLLLSCGANAL------VRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        91 ~~A~~~g~~~~v~~Ll~~ga~~~------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      |+|+.+|+..++..|++.|++..      ..+..|.|+-.+|..+|+..+.-+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            66666666666666666655432      2233466666666666666666665544

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.22  E-value=6.6e-07  Score=88.89  Aligned_cols=50  Identities=24%  Similarity=0.549  Sum_probs=43.9

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      .+....|.||++.+.++++++|||.| |..|+..+......||+||..+..
T Consensus        23 Le~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence            34457999999999999999999999 999999988776789999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.21  E-value=6.7e-07  Score=59.35  Aligned_cols=30  Identities=40%  Similarity=0.934  Sum_probs=21.2

Q ss_pred             cccccccCCc----eEEeCCCCchhhHHhHHHHhcc
Q 010851          448 CVICWEAPVE----GACVPCGHMAGCMSCLSEIKAK  479 (499)
Q Consensus       448 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~  479 (499)
                      |+||.| +.+    ++.++|||.| |..|++++...
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l~~~   34 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKLSKK   34 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EE-EHHHHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHHHhc
Confidence            899999 888    8999999999 99999999874

>smart00184 RING Ring finger

Probab=98.19  E-value=1.5e-06  Score=56.61  Aligned_cols=38  Identities=37%  Similarity=0.988  Sum_probs=33.7

Q ss_pred             cccccccCCceEEeCCCCchhhHHhHHHHhc-cCCccccc
Q 010851          448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVC  486 (499)
Q Consensus       448 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~C  486 (499)
                      |.||++....++.++|||.| |..|...+.. ....||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence            78999999999999999999 9999999876 45579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>smart00504 Ubox Modified RING finger domain

Probab=98.19  E-value=1.3e-06  Score=64.19  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=41.4

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ..|+||.+...+++..+|||.| |..|+..+......||+|+.++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCC
Confidence            4799999999999999999999 99999998877778999999884

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=8.2e-07  Score=81.22  Aligned_cols=45  Identities=44%  Similarity=1.006  Sum_probs=39.1

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHh-ccCC-cccccccccc
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIK-AKKG-DCPVCRTKIN  491 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-~~~~-~Cp~Cr~~i~  491 (499)
                      ..|.||++..-.+...||||.| |..|+...| .++. .||+||+.+.
T Consensus       216 ~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         216 YKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             cceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhcc
Confidence            6999999999999999999999 999999944 4443 5999999774

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.05  E-value=9.9e-06  Score=70.63  Aligned_cols=64  Identities=19%  Similarity=0.132  Sum_probs=32.5

Q ss_pred             CccccCCCchHHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCChHHHHHHHcCCcHHHHHHHHHc
Q 010851            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQG-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL   73 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~   73 (499)
                      ++|.+|.-|+|+||.|+..|+.+.+.+|+.+| +.+...|..|.+++.+|=+. |+.+++..|-++
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~-g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKG-GAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhc-ChHHHHHHHHHH
Confidence            44455555555555555555555555555555 44555555555555554443 555555555444

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2.4e-06  Score=85.41  Aligned_cols=52  Identities=29%  Similarity=0.768  Sum_probs=43.6

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccC-----Cccccccccccc--eeEee
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-----GDCPVCRTKINQ--VIRLY  497 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----~~Cp~Cr~~i~~--~~~~~  497 (499)
                      ...|+||++.+.-++...|||.| |..|+...|...     +.||+||..|.-  ...+|
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            46999999999999999999999 999999987653     479999998864  44443

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.02  E-value=1.9e-06  Score=80.97  Aligned_cols=47  Identities=28%  Similarity=0.655  Sum_probs=43.4

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ...|.||.|-+..+++.||+|.| |..|+......++.||.|+.++.+
T Consensus        23 lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   23 LLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence            36999999999999999999999 999999988888899999998863

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.00  E-value=6.1e-06  Score=89.01  Aligned_cols=128  Identities=15%  Similarity=-0.030  Sum_probs=100.5

Q ss_pred             ccCCCCChHHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH-HHCCCCCcccCCCCCCH
Q 010851           45 WMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLL-LSCGANALVRNDDCHTA  122 (499)
Q Consensus        45 ~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~L-l~~ga~~~~~d~~g~tp  122 (499)
                      ...-.|+|-||+++.. +..-+++.+++- |......  |.+|.-.+|+++ .++.+++-+| .-.|..++.+|..|+||
T Consensus       569 ~~~~r~~lllhL~a~~-lyawLie~~~e~~~~~~~el--d~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAEL-LYAWLIEKVIEWAGSGDLEL--DRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cCCCcchHHHHHHHHH-hHHHHHHHHhcccccCchhh--cccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcc
Confidence            3456789999999987 988999999986 6666666  677777888844 4555555444 45678899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHccccccc----ccccccCCCHHHHHhhhcCCHHHHHHHHhc
Q 010851          123 LGVARIKGHINVVRAIESHICYFCG----WLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (499)
Q Consensus       123 L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~  177 (499)
                      ||+|+.+|+..++..|++.|++...    ......|.|+-. +|..+++..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~-la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD-LARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh-hhhcccccchHHHHhhh
Confidence            9999999999999999988875441    123346888988 88899999998888765

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.96  E-value=6.6e-06  Score=62.07  Aligned_cols=41  Identities=34%  Similarity=0.853  Sum_probs=33.6

Q ss_pred             cccccccccC-------------CceEEeCCCCchhhHHhHHHHhccCCcccccc
Q 010851          446 SSCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR  487 (499)
Q Consensus       446 ~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr  487 (499)
                      ..|.||++..             ..++..+|||.| ...|+.+|......||+||
T Consensus        20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred             CcccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence            4699999877             334556999999 9999999998888999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.96  E-value=2.1e-05  Score=75.47  Aligned_cols=56  Identities=38%  Similarity=0.496  Sum_probs=29.3

Q ss_pred             HHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 010851           54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANA  112 (499)
Q Consensus        54 Lh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~  112 (499)
                      |.+||+. |..+.|+.|++.|.++|.+  |.....||.+|+..||.++|++||+.||-.
T Consensus        40 lceacR~-GD~d~v~~LVetgvnVN~v--D~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   40 LCEACRA-GDVDRVRYLVETGVNVNAV--DRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHhhc-ccHHHHHHHHHhCCCcchh--hcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            4455554 5555555555555555555  445555555555555555555555555433

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.96  E-value=3.5e-06  Score=77.51  Aligned_cols=46  Identities=28%  Similarity=0.547  Sum_probs=42.6

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ..|-||.+.+..++..+|||.| |..|+.+.....+.||+||.+...
T Consensus        26 lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          26 LRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             HHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHHh
Confidence            6999999999999999999999 999999988878899999998764

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.91  E-value=3e-05  Score=74.40  Aligned_cols=76  Identities=30%  Similarity=0.308  Sum_probs=63.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g   97 (499)
                      .--|+.|++.|+++.|++|++.|.++|..|....+||.+|+.. ||.++|++||+.|+--..-  ..+|... |+++.+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc-GHe~vvklLLenGAiC~rd--tf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC-GHEDVVKLLLENGAICSRD--TFDGDRC-HYGALND  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc-CcHHHHHHHHHcCCccccc--ccCcchh-hhhhhhH
Confidence            4558999999999999999999999999999999999999998 9999999999999865432  3445443 5555543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=2.7e-06  Score=89.25  Aligned_cols=52  Identities=23%  Similarity=0.596  Sum_probs=45.6

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCcccccccccc--ceeEee
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN--QVIRLY  497 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~--~~~~~~  497 (499)
                      ...|++|-+++.+++...|||.| |..|+...... .++||.|...|.  .+.+||
T Consensus       643 ~LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             ceeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            36999999999999999999999 99999887665 468999999995  677776

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=9.1e-06  Score=75.47  Aligned_cols=49  Identities=29%  Similarity=0.657  Sum_probs=40.5

Q ss_pred             CCCccccccccccCC---ceEEeCCCCchhhHHhHHHHhc-cCCcccccccccc
Q 010851          442 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN  491 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~  491 (499)
                      .+...+|.|||+.+.   ..+.+||.|.| ...|+.+|.. .+.+||+||.++.
T Consensus       320 a~~GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         320 ADKGVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             cCCCceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence            344479999999763   35678999999 9999999987 5779999999874

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=7e-06  Score=74.89  Aligned_cols=48  Identities=27%  Similarity=0.665  Sum_probs=43.0

Q ss_pred             ccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010851          447 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  498 (499)
Q Consensus       447 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  498 (499)
                      .|..|-++...++++||.|.++|..|...+..    ||+|+.+....+.+|.
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~----CPiC~~~~~s~~~v~~  207 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDESLRI----CPICRSPKTSSVEVNF  207 (207)
T ss_pred             cceecCcCCceEEeecccceEecccccccCcc----CCCCcChhhceeeccC
Confidence            49999999999999999999999999876544    9999999999888873

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=1e-05  Score=75.33  Aligned_cols=48  Identities=29%  Similarity=0.643  Sum_probs=42.2

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCcccccccccccee
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVI  494 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~  494 (499)
                      .+|.||+.....++.++|+|.| |+.|++..... ++.|++||.+|.+.|
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcch
Confidence            5999999999999999999999 99999886655 456999999998755

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.73  E-value=1.2e-05  Score=77.17  Aligned_cols=48  Identities=35%  Similarity=0.794  Sum_probs=42.9

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc--CCcccccccccccee
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKINQVI  494 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~Cp~Cr~~i~~~~  494 (499)
                      ..|.||-|+.+++...||||.. |..|...|+..  ...||.||..|+..-
T Consensus       370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEecccc
Confidence            5999999999999999999999 99999999865  357999999998543

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=2.4e-05  Score=74.68  Aligned_cols=44  Identities=30%  Similarity=0.890  Sum_probs=38.0

Q ss_pred             cccccccccC-------------CceEEeCCCCchhhHHhHHHHhccCCccccccccc
Q 010851          446 SSCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  490 (499)
Q Consensus       446 ~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i  490 (499)
                      +.|.||+|..             +.+.-+||||.+ ..+|.+.|......||+||.++
T Consensus       288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence            7999999972             234568999999 9999999998888899999995

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=2.9e-05  Score=73.50  Aligned_cols=51  Identities=27%  Similarity=0.785  Sum_probs=44.4

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccccee
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  494 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  494 (499)
                      .++..|+||+..+...+|.||+|.- |..|+.+..-..+.|-.|+..+...+
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~~~  470 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVIDVI  470 (489)
T ss_pred             cccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeeehh
Confidence            3447999999999999999999999 99999997766778999999887543

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=4.1e-05  Score=74.32  Aligned_cols=46  Identities=30%  Similarity=0.768  Sum_probs=38.6

Q ss_pred             cccccccccCCce---EEeCCCCchhhHHhHHHHhccCC-ccccccccccc
Q 010851          446 SSCVICWEAPVEG---ACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  492 (499)
Q Consensus       446 ~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~  492 (499)
                      ..|.||+|.....   ..+||+|.| ...|+..|..+.+ .||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence            4999999987544   567999999 9999999998754 69999998753

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.50  E-value=0.0001  Score=55.72  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      +...|+||.+...++|.+||||.| +..|+.+|... ...||+|+.++..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            346999999999999999999999 99999999987 6789999998864

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=5e-05  Score=75.40  Aligned_cols=45  Identities=38%  Similarity=0.775  Sum_probs=39.3

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  488 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~  488 (499)
                      .+...|+||++.+..+.++||||.| |..|+..++...-.||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence            4557999999999999999999999 99999998863347999993

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.41  E-value=0.00014  Score=68.83  Aligned_cols=57  Identities=33%  Similarity=0.747  Sum_probs=46.2

Q ss_pred             CCCCCCCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc--CCcccccccccccee
Q 010851          437 SNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKINQVI  494 (499)
Q Consensus       437 ~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~Cp~Cr~~i~~~~  494 (499)
                      +....+++...|.||-+...-...+||+|.. |..|+-++...  .+.|++||..-..++
T Consensus        53 SaddtDEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~  111 (493)
T COG5236          53 SADDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV  111 (493)
T ss_pred             cccccccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence            3444456778999999999999999999999 99999888754  568999998765443

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.16  E-value=9.1e-05  Score=52.77  Aligned_cols=43  Identities=35%  Similarity=0.859  Sum_probs=23.1

Q ss_pred             cccccccccCCceEE-eCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          446 SSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ..|.+|.+....++. ..|.|+| |..|+..--  ...||+|+.+..
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~--~~~CPvC~~Paw   51 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCI--GSECPVCHTPAW   51 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B--TTTGGGGT--TTB-SSS--B-S
T ss_pred             cCCcHHHHHhcCCceeccCccHH-HHHHhHHhc--CCCCCCcCChHH
Confidence            589999999999975 5899999 999986632  235999998874

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.14  E-value=0.00044  Score=52.70  Aligned_cols=32  Identities=31%  Similarity=0.709  Sum_probs=26.7

Q ss_pred             EEeCCCCchhhHHhHHHHhcc---CCcccccccccc
Q 010851          459 ACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN  491 (499)
Q Consensus       459 ~~~pCgH~~~C~~C~~~~~~~---~~~Cp~Cr~~i~  491 (499)
                      +.-.|+|.| ...|+.++..+   +..||+||++..
T Consensus        48 v~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   48 VWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             eeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence            445899999 99999998874   468999999764

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=7.2e-05  Score=71.38  Aligned_cols=51  Identities=24%  Similarity=0.544  Sum_probs=40.4

Q ss_pred             CCccccccccccCCceEEe-CCCCchhhHHhHHHHhc-cCCcccccccccccee
Q 010851          443 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVI  494 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~  494 (499)
                      .....|.||++........ -|+|+| |+.|+..-.+ ....||.||+...+..
T Consensus        41 ~~~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhhhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhccccc
Confidence            3446999999988766655 699999 9999987554 4668999999887543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00023  Score=75.61  Aligned_cols=46  Identities=35%  Similarity=0.768  Sum_probs=41.1

Q ss_pred             ccccccccccCCc-----eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          445 SSSCVICWEAPVE-----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ...|.||+|....     +..+||+|.| |..|...|-+....||+||..+.
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             CCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhhh
Confidence            4699999999888     6888999999 99999999998889999999443

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00035  Score=69.81  Aligned_cols=49  Identities=31%  Similarity=0.807  Sum_probs=43.7

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ..+-.|+||+..+..++..||||-+ |..|+.+...++..||.||..+.+
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence            4447999999999999999999999 999999977777899999998875

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.94  E-value=0.00025  Score=48.83  Aligned_cols=44  Identities=32%  Similarity=0.886  Sum_probs=36.2

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ...|..|.......+++||||.. |..|.....-  ..||+|..+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rY--ngCPfC~~~~~   50 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERY--NGCPFCGTPFE   50 (55)
T ss_pred             ceeEEEcccccccccccccccee-eccccChhhc--cCCCCCCCccc
Confidence            36899999998889999999999 9999654332  24999999886

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0004  Score=67.90  Aligned_cols=49  Identities=31%  Similarity=0.696  Sum_probs=40.9

Q ss_pred             ccccccccccCCceE-----E---eCCCCchhhHHhHHHHhc--c-----CCcccccccccccee
Q 010851          445 SSSCVICWEAPVEGA-----C---VPCGHMAGCMSCLSEIKA--K-----KGDCPVCRTKINQVI  494 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~~~~--~-----~~~Cp~Cr~~i~~~~  494 (499)
                      +..|.||++.....+     +   .+|.|.| |..|+..|..  +     .+.||.||.+...++
T Consensus       161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~  224 (344)
T KOG1039|consen  161 EKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN  224 (344)
T ss_pred             cccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence            469999999887777     5   6799999 9999999993  3     368999999877654

>smart00248 ANK ankyrin repeats

Probab=96.72  E-value=0.0029  Score=37.00  Aligned_cols=22  Identities=55%  Similarity=0.715  Sum_probs=8.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCC
Q 010851           88 TPLHHAAKRGLEPTVRLLLSCG  109 (499)
Q Consensus        88 TpL~~A~~~g~~~~v~~Ll~~g  109 (499)
                      ||||+|+..++.+++++|++.|
T Consensus         4 ~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        4 TPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC
Confidence            3344443334444444333333

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.70  E-value=0.003  Score=37.00  Aligned_cols=27  Identities=44%  Similarity=0.758  Sum_probs=15.1

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHHcCCCC
Q 010851           50 GKTPLIVACMDSGLINVAKTLIELGANI   77 (499)
Q Consensus        50 g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~   77 (499)
                      |.||||+|+.. ++.+++++|++++.++
T Consensus         2 ~~~~l~~~~~~-~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAEN-GNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHc-CCHHHHHHHHHcCCCC
Confidence            45555555554 5555555555555544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.56  E-value=0.0037  Score=62.57  Aligned_cols=64  Identities=20%  Similarity=0.137  Sum_probs=40.2

Q ss_pred             HHHHHHHHHcCCCCCcc----CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHH
Q 010851           64 INVAKTLIELGANINAY----RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR  127 (499)
Q Consensus        64 ~~~v~~Ll~~ga~~~~~----~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~  127 (499)
                      ...+++|.+++.+.|..    ..+..-.|+||+|+..|..++|.+||+.|+|+...|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            45556666666555442    01223456777777777777777777777777777777777766665

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.0022  Score=59.28  Aligned_cols=46  Identities=26%  Similarity=0.803  Sum_probs=37.3

Q ss_pred             ccccccccccCCceEEe-CCCCchhhHHhHHHHhc--cCCcccccccccc
Q 010851          445 SSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA--KKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~--~~~~Cp~Cr~~i~  491 (499)
                      ..+|++|-+.+..+... +|||++ |..|+..-..  ..-.||.|...+.
T Consensus       239 ~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  239 DTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCc
Confidence            36999999999999766 699999 9999876433  2347999988776

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=96.49  E-value=0.0022  Score=61.47  Aligned_cols=30  Identities=37%  Similarity=0.972  Sum_probs=25.6

Q ss_pred             CCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          462 PCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       462 pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      +|||.| |..|+.+++.. ...||.|+.++..
T Consensus        25 ~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570        25 VCGHTL-CESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCcc-cHHHHHHHhcCCCCCCCCCCCccch
Confidence            899999 99999998754 4589999998863

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.42  E-value=0.0066  Score=60.86  Aligned_cols=62  Identities=15%  Similarity=0.046  Sum_probs=41.4

Q ss_pred             HHHHHHHHHCCCCCc------ccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhh
Q 010851           99 EPTVRLLLSCGANAL------VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAP  163 (499)
Q Consensus        99 ~~~v~~Ll~~ga~~~------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~  163 (499)
                      ...+++|.+++++.|      ..+..--|+||+|+..|..++|.+||+.|+|..  .+|..|+||.. ++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~--~kd~~Grtpy~-ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS--TKDGAGRTPYS-LSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch--hcccCCCCccc-ccc
Confidence            345666666665543      233445577777777777777777777777777  77777777777 443

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.36  E-value=0.0015  Score=57.12  Aligned_cols=48  Identities=25%  Similarity=0.464  Sum_probs=41.2

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccccee
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  494 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  494 (499)
                      -.|.||......+|+..|||-| |..|+.+-.+....|-+|.+.....+
T Consensus       197 F~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G~f  244 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYGRF  244 (259)
T ss_pred             eeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhccce
Confidence            4999999999999999999999 99999887666678999988665433

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.05  E-value=0.0034  Score=42.37  Aligned_cols=42  Identities=31%  Similarity=0.755  Sum_probs=20.7

Q ss_pred             cccccccC--CceEEe--CCCCchhhHHhHHHHhc-cCCccccccccc
Q 010851          448 CVICWEAP--VEGACV--PCGHMAGCMSCLSEIKA-KKGDCPVCRTKI  490 (499)
Q Consensus       448 C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i  490 (499)
                      |++|.+..  .+..+.  +||+.+ |..|..++.. ..+.||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence            56666654  333455  577888 9999999986 477999999874

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.0021  Score=60.16  Aligned_cols=48  Identities=25%  Similarity=0.527  Sum_probs=41.8

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccccee
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  494 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  494 (499)
                      ..|-||...+.++|...|+|.| |..|+..-.+....|.+|.+.+...+
T Consensus       242 f~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~~  289 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGSF  289 (313)
T ss_pred             ccccccccccccchhhcCCcee-ehhhhccccccCCcceeccccccccc
Confidence            4799999999999999999999 99998886666678999998876543

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.0041  Score=62.02  Aligned_cols=48  Identities=31%  Similarity=0.616  Sum_probs=37.5

Q ss_pred             CCccccccccccC-----------------CceEEeCCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010851          443 GSSSSCVICWEAP-----------------VEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~-----------------~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  491 (499)
                      .....|+|||...                 .+..+.||.|.| -..|.++|-.. +-.||+||.++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCC
Confidence            4457999999632                 224456999999 99999999885 558999999874

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.56  E-value=0.0032  Score=66.09  Aligned_cols=52  Identities=21%  Similarity=0.391  Sum_probs=43.0

Q ss_pred             CccccccccccCCceEE---eCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010851          444 SSSSCVICWEAPVEGAC---VPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  496 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~  496 (499)
                      ....|++|+....+...   .+|+|.| |..|+..|.+-...||+||..+.+++.+
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeeee
Confidence            44689999987766543   3899999 9999999998777899999999877655

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.53  E-value=0.0085  Score=56.90  Aligned_cols=46  Identities=33%  Similarity=0.870  Sum_probs=35.8

Q ss_pred             ccccccccccC--CceEEe--CCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010851          445 SSSCVICWEAP--VEGACV--PCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  491 (499)
                      +..|+.|+|.-  .+--|.  |||... |.+|...+++. .++||-||....
T Consensus        14 ed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             cccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhcc
Confidence            35699999864  344454  678888 99999998864 679999999775

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=95.32  E-value=0.0083  Score=57.95  Aligned_cols=45  Identities=31%  Similarity=0.813  Sum_probs=37.5

Q ss_pred             CCccccccccccCCceEEeCC--CCchhhHHhHHHHhccCCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPC--GHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      .+..+|+||.+....+++ .|  ||.. |..|..++..   +||.||.++..
T Consensus        46 ~~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~---~CP~Cr~~~g~   92 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSN---KCPTCRLPIGN   92 (299)
T ss_pred             hhhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcc---cCCcccccccc
Confidence            344799999999999988 56  7999 9999876655   69999999873

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=0.0087  Score=55.18  Aligned_cols=45  Identities=24%  Similarity=0.575  Sum_probs=36.4

Q ss_pred             cccccccccCCceE----------EeCCCCchhhHHhHHHHhcc--CCcccccccccc
Q 010851          446 SSCVICWEAPVEGA----------CVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN  491 (499)
Q Consensus       446 ~~C~iC~~~~~~~~----------~~pCgH~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  491 (499)
                      ..|.||-...-..+          -+.|+|.| -..|+..|+..  +..||+|++.|+
T Consensus       225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             chhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhh
Confidence            58999987654333          56999999 99999999975  457999998876

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=95.13  E-value=0.022  Score=48.61  Aligned_cols=51  Identities=29%  Similarity=0.701  Sum_probs=37.6

Q ss_pred             cccccccccCCceEEeCCC-Cchh-----------hHHhHHHHhcc-------------------------------CCc
Q 010851          446 SSCVICWEAPVEGACVPCG-HMAG-----------CMSCLSEIKAK-------------------------------KGD  482 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCg-H~~~-----------C~~C~~~~~~~-------------------------------~~~  482 (499)
                      ..|+||||-+=+.|++-|. |.-.           -..|..+.++.                               +..
T Consensus         3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   82 (162)
T PF07800_consen    3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELA   82 (162)
T ss_pred             ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccccc
Confidence            5899999999999998765 3322           24677666541                               125


Q ss_pred             cccccccccceeEe
Q 010851          483 CPVCRTKINQVIRL  496 (499)
Q Consensus       483 Cp~Cr~~i~~~~~~  496 (499)
                      ||+||..|...+.+
T Consensus        83 CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   83 CPLCRGEVKGWTVV   96 (162)
T ss_pred             CccccCceeceEEc
Confidence            99999999987766

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.98  E-value=0.017  Score=57.21  Aligned_cols=41  Identities=32%  Similarity=0.662  Sum_probs=32.2

Q ss_pred             cccccccccCCce----EEeCCCCchhhHHhHHHHhccCCcccccccc
Q 010851          446 SSCVICWEAPVEG----ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK  489 (499)
Q Consensus       446 ~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~  489 (499)
                      ..|+||+|+--.-    +...|.|-| -..|..+|+..  .||+||--
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsf-h~~cl~~w~~~--scpvcR~~  220 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSF-HCSCLMKWWDS--SCPVCRYC  220 (493)
T ss_pred             CCcchhHhhcCccccceeeeeccccc-chHHHhhcccC--cChhhhhh
Confidence            5999999876322    456899999 77899999874  59999853

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.80  E-value=0.022  Score=51.84  Aligned_cols=48  Identities=17%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             CccccccccccCCce----EEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          444 SSSSCVICWEAPVEG----ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ..-.|+||.+...+.    ++-||||++ |.+|.+++.+....||+|-.+...
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence            446999999987554    455999999 999999999888899999998864

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.66  E-value=0.27  Score=43.42  Aligned_cols=139  Identities=17%  Similarity=0.090  Sum_probs=94.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g   97 (499)
                      .-.|..|+.++-+.+++++-+...+-   -...++..-.||+. .+.|+|+.+   |-++...    +-.+-+-.|....
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~-qkydiV~WI---~qnL~i~----~~~~iFdIA~~~k  115 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEE-QKYDIVKWI---GQNLHIY----NPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHH-ccccHHHHH---hhccCCC----Cchhhhhhhhhcc
Confidence            34677888999999988876643211   13456788899987 789999988   3344433    2235667788887


Q ss_pred             CHHHH----HHHHHCCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHH
Q 010851           98 LEPTV----RLLLSCGANALVRNDD--CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (499)
Q Consensus        98 ~~~~v----~~Ll~~ga~~~~~d~~--g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~  171 (499)
                      ..++.    .+++++...-...|..  =.--|..|+..|-...|...+++|.+++        .++|- .|+..++.+++
T Consensus       116 DlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--------~~vls-~Av~ynhRkIL  186 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--------IIVLS-QAVKYNHRKIL  186 (192)
T ss_pred             chhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--------HHHHH-HHHHhhHHHHH
Confidence            77652    2333332111001100  0023678999999999999999998876        37888 89999999999


Q ss_pred             HHHHh
Q 010851          172 VVVIP  176 (499)
Q Consensus       172 ~~Ll~  176 (499)
                      .+++.
T Consensus       187 ~yfi~  191 (192)
T PF03158_consen  187 DYFIR  191 (192)
T ss_pred             HHhhc
Confidence            98874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=94.31  E-value=0.016  Score=58.71  Aligned_cols=48  Identities=33%  Similarity=0.752  Sum_probs=42.0

Q ss_pred             CccccccccccCCceEE-eCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          444 SSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      .+..|++|.....+++. ..|||.| |..|...+......||.|+..+..
T Consensus        20 ~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQ   68 (391)
T ss_pred             ccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccch
Confidence            44799999999999998 4999999 999999988877789999887654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.21  E-value=0.05  Score=52.07  Aligned_cols=52  Identities=27%  Similarity=0.448  Sum_probs=39.5

Q ss_pred             CCccccccccccC----CceEEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEe
Q 010851          443 GSSSSCVICWEAP----VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRL  496 (499)
Q Consensus       443 ~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~  496 (499)
                      ...-.|+|....+    .-+++.||||+| +..++..+. ....||+|..++.  .+|.|
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k-~~~~Cp~c~~~f~~~DiI~L  168 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELK-KSKKCPVCGKPFTEEDIIPL  168 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhc-ccccccccCCccccCCEEEe
Confidence            3446999998766    334555999999 999999996 3457999999986  34544

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.02  E-value=0.096  Score=48.83  Aligned_cols=31  Identities=29%  Similarity=0.641  Sum_probs=27.5

Q ss_pred             cccccccccCCceEEeCCC----CchhhHHhHHHHh
Q 010851          446 SSCVICWEAPVEGACVPCG----HMAGCMSCLSEIK  477 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~  477 (499)
                      ..|.+|.|+..|..|+.|-    |.| |+.|...-.
T Consensus       269 LcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSResI  303 (352)
T KOG3579|consen  269 LCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRESI  303 (352)
T ss_pred             eeehhhhhhhccCceeecCCCcccce-ecccCHHHH
Confidence            6999999999999999995    999 999987633

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.98  E-value=0.027  Score=60.81  Aligned_cols=44  Identities=30%  Similarity=0.720  Sum_probs=37.9

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc--CCcccccccccc
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN  491 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  491 (499)
                      ..|.+|++ ...++..+|||.+ |.+|.......  ...||+||..+.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence            69999999 8888888999999 99999887664  337999998775

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=93.88  E-value=0.067  Score=36.69  Aligned_cols=40  Identities=23%  Similarity=0.640  Sum_probs=31.1

Q ss_pred             ccccccc--cCCceEEeCCC-----CchhhHHhHHHHhccC--Ccccccc
Q 010851          447 SCVICWE--APVEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCR  487 (499)
Q Consensus       447 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~Cp~Cr  487 (499)
                      .|-||++  ...++...||.     |.+ -..|+.+|...+  ..||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence            3889996  55667778996     556 999999998654  4899994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=93.85  E-value=0.025  Score=57.09  Aligned_cols=49  Identities=22%  Similarity=0.613  Sum_probs=39.8

Q ss_pred             CCCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-----CCccccccccc
Q 010851          441 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-----KGDCPVCRTKI  490 (499)
Q Consensus       441 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----~~~Cp~Cr~~i  490 (499)
                      +..+..+|.+|.|...+.+...|.|.| |..|+..-...     ...||.|...+
T Consensus       532 enk~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             cccCceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence            345667999999999999999999999 99999664432     34799997655

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=93.80  E-value=0.069  Score=39.71  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=27.9

Q ss_pred             EEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          459 ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       459 ~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      +---|.|.| -..|+.+|...+..||++|++..
T Consensus        50 ~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          50 VWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             EEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence            334799999 99999999999999999998764

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.78  E-value=0.33  Score=44.17  Aligned_cols=50  Identities=10%  Similarity=0.060  Sum_probs=32.0

Q ss_pred             CHHHHHHHHHccc-ccccc-cccccCCCHHHHHhhhcCCHHHHHHHHhcCCCC
Q 010851          131 HINVVRAIESHIC-YFCGW-LREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (499)
Q Consensus       131 ~~~~v~~Ll~~g~-~~~~~-~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~  181 (499)
                      +..++++++++|. ++|.. .+-+.|.|-|. -|.+.++.+++.+||++||-.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD-NA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLD-NAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHH-hHHhcCcHHHHHHHHHcCccc
Confidence            4566777777763 55421 23456777777 677777777777777777743

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=93.51  E-value=0.048  Score=45.02  Aligned_cols=47  Identities=30%  Similarity=0.648  Sum_probs=40.1

Q ss_pred             cccccccccCCceEEe----CCCCchhhHHhHHHHhcc---CCccccccccccce
Q 010851          446 SSCVICWEAPVEGACV----PCGHMAGCMSCLSEIKAK---KGDCPVCRTKINQV  493 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~~~~---~~~Cp~Cr~~i~~~  493 (499)
                      -+|.||.|...+..|+    -||-.. |..|.-.+|+.   -+.||+|+..+++.
T Consensus        81 YeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   81 YECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             eeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccc
Confidence            5999999999999887    499888 99999888875   35899999988753

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.51  E-value=0.29  Score=44.58  Aligned_cols=91  Identities=9%  Similarity=0.004  Sum_probs=65.3

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCC----CCCcHHHHHHHc--CCHHHHHHHHHCC-CCCccc---CCCC
Q 010851           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGG----RGGTPLHHAAKR--GLEPTVRLLLSCG-ANALVR---NDDC  119 (499)
Q Consensus        50 g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~----~g~TpL~~A~~~--g~~~~v~~Ll~~g-a~~~~~---d~~g  119 (499)
                      -.++|-+|..+ +..+++.+|+.. .++..+  |.    .+.--+-++...  .+..+++++|+.| +++|..   -+.|
T Consensus       179 A~~Am~~si~~-~K~dva~~lls~-f~ft~~--dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSG  254 (284)
T PF06128_consen  179 AHQAMWLSIGN-AKEDVALYLLSK-FNFTKQ--DVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSG  254 (284)
T ss_pred             HHHHHHHHhcc-cHHHHHHHHHhh-cceecc--hhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCc
Confidence            35788888866 777888888864 333333  22    222234444433  4567889999998 777653   4679


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcccc
Q 010851          120 HTALGVARIKGHINVVRAIESHICY  144 (499)
Q Consensus       120 ~tpL~~A~~~g~~~~v~~Ll~~g~~  144 (499)
                      .|-|.-|...++.+++.+|+++|+-
T Consensus       255 dtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             chHHHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=93.14  E-value=0.024  Score=54.23  Aligned_cols=52  Identities=23%  Similarity=0.581  Sum_probs=43.4

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010851          444 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  496 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~  496 (499)
                      ....|.+|-.-+.+...+ -|-|.| |..|+-+-......||.|...|-+...+
T Consensus        14 ~~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~pl   66 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHPL   66 (331)
T ss_pred             cceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCcccc
Confidence            346999999999888766 699999 9999988777678999999988776644

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.61  E-value=0.061  Score=58.06  Aligned_cols=48  Identities=27%  Similarity=0.719  Sum_probs=37.1

Q ss_pred             CCcccccccccc-------CCceEEeCCCCchhhHHhHHHHhccC--Ccccccccccc
Q 010851          443 GSSSSCVICWEA-------PVEGACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~-------~~~~~~~pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~  491 (499)
                      .+..+|.||+..       ...-.+-.|.|.| ...|.-+|-+.+  ..||+||..|.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCccccccc
Confidence            445799999953       3344455799999 999999998764  47999998764

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.56  E-value=0.073  Score=52.41  Aligned_cols=30  Identities=37%  Similarity=0.917  Sum_probs=25.4

Q ss_pred             cccccccccCCc---eEEeCCCCchhhHHhHHHH
Q 010851          446 SSCVICWEAPVE---GACVPCGHMAGCMSCLSEI  476 (499)
Q Consensus       446 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~  476 (499)
                      -.|+||++...-   .+++||+|.| |..|...-
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY  217 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDY  217 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHH-HHHHHHHH
Confidence            589999998754   5788999999 99998663

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=92.33  E-value=0.11  Score=36.88  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=28.4

Q ss_pred             cccccccccCCceEEe-CCCCchhhHHhHHHHhcc--CCcccc
Q 010851          446 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK--KGDCPV  485 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~--~~~Cp~  485 (499)
                      ..|+|.+..+.+++.- .|||.| ..+.+..+...  ...||+
T Consensus        12 ~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   12 LKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred             cCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence            6999999999999875 899999 99999998733  347998

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=92.04  E-value=0.077  Score=48.17  Aligned_cols=44  Identities=27%  Similarity=0.684  Sum_probs=33.1

Q ss_pred             cccccccccc---CCceEEe--C-CCCchhhHHhHHHHhccC-Cccc--ccccc
Q 010851          445 SSSCVICWEA---PVEGACV--P-CGHMAGCMSCLSEIKAKK-GDCP--VCRTK  489 (499)
Q Consensus       445 ~~~C~iC~~~---~~~~~~~--p-CgH~~~C~~C~~~~~~~~-~~Cp--~Cr~~  489 (499)
                      ...|+||..-   ..++.++  | |-|.+ |..|..++-... ..||  -|..-
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~kI   62 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGKI   62 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHHH
Confidence            3699999853   2455554  6 99999 999999988764 4899  77553

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.01  E-value=0.11  Score=34.49  Aligned_cols=46  Identities=30%  Similarity=0.861  Sum_probs=26.0

Q ss_pred             ccccccccCCceEEeCCC-CchhhHHhHHHHhccCCccccccccccceeE
Q 010851          447 SCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  495 (499)
Q Consensus       447 ~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  495 (499)
                      -|.-|+-.....  +.|. |.. |..|...|...+..||+|..++...++
T Consensus         4 nCKsCWf~~k~L--i~C~dHYL-Cl~CLt~ml~~s~~C~iC~~~LPtkir   50 (50)
T PF03854_consen    4 NCKSCWFANKGL--IKCSDHYL-CLNCLTLMLSRSDRCPICGKPLPTKIR   50 (50)
T ss_dssp             ---SS-S--SSE--EE-SS-EE-EHHHHHHT-SSSSEETTTTEE----S-
T ss_pred             cChhhhhcCCCe--eeecchhH-HHHHHHHHhccccCCCcccCcCccccC
Confidence            566676655554  4587 665 999999999888899999998876553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=91.31  E-value=0.16  Score=42.50  Aligned_cols=32  Identities=25%  Similarity=0.534  Sum_probs=26.8

Q ss_pred             cccccccccCCc---eEEeCCC------CchhhHHhHHHHhc
Q 010851          446 SSCVICWEAPVE---GACVPCG------HMAGCMSCLSEIKA  478 (499)
Q Consensus       446 ~~C~iC~~~~~~---~~~~pCg------H~~~C~~C~~~~~~  478 (499)
                      .+|.||+++.-+   +|.++||      |+| |..|..+|.+
T Consensus        27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw~~   67 (134)
T PF05883_consen   27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRWRR   67 (134)
T ss_pred             eeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHHHh
Confidence            699999998765   5677898      677 9999999954

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.83  E-value=0.056  Score=50.98  Aligned_cols=31  Identities=26%  Similarity=0.878  Sum_probs=24.4

Q ss_pred             EEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          459 ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       459 ~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ..+||.|.| |.+|+..-.  .+.||.|-..|.+
T Consensus       105 RmIPCkHvF-Cl~CAr~~~--dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen  105 RMIPCKHVF-CLECARSDS--DKICPLCDDRVQR  135 (389)
T ss_pred             cccccchhh-hhhhhhcCc--cccCcCcccHHHH
Confidence            467999999 999987644  3569999877654

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=89.96  E-value=0.079  Score=39.45  Aligned_cols=45  Identities=33%  Similarity=0.822  Sum_probs=21.5

Q ss_pred             cccccccccCC------ceEEe--CCCCchhhHHhHHHHhcc----C-------Ccccccccccc
Q 010851          446 SSCVICWEAPV------EGACV--PCGHMAGCMSCLSEIKAK----K-------GDCPVCRTKIN  491 (499)
Q Consensus       446 ~~C~iC~~~~~------~~~~~--pCgH~~~C~~C~~~~~~~----~-------~~Cp~Cr~~i~  491 (499)
                      ..|.||++..-      +.+.-  .|++.| -..|+..|-..    +       +.||.|+.+|.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            58999997643      22332  688888 88998887642    1       35999999885

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=89.48  E-value=0.15  Score=48.73  Aligned_cols=53  Identities=23%  Similarity=0.584  Sum_probs=40.0

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccc--cceeEee
Q 010851          444 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLY  497 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i--~~~~~~~  497 (499)
                      +...|+||+....++..+ -.|-+| |+.|+-.-...-+.||+-..+.  +..+|+|
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~  354 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF  354 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence            446999999988777544 568998 9999988666667899865554  4666665

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.43  E-value=0.13  Score=37.99  Aligned_cols=29  Identities=28%  Similarity=0.678  Sum_probs=23.9

Q ss_pred             CCCCchhhHHhHHHHhcc---CCcccccccccc
Q 010851          462 PCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN  491 (499)
Q Consensus       462 pCgH~~~C~~C~~~~~~~---~~~Cp~Cr~~i~  491 (499)
                      -|.|.| -..|+.++...   ...||+||+...
T Consensus        50 ~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   50 YCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             HHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence            699999 99999998764   357999998653

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=88.79  E-value=2.1  Score=37.92  Aligned_cols=113  Identities=19%  Similarity=0.123  Sum_probs=74.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHH----HHHHHcCCCCCccCCCCCCCcHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA----KTLIELGANINAYRPGGRGGTPLH   91 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v----~~Ll~~ga~~~~~~~d~~g~TpL~   91 (499)
                      ..++.+-.|++..+.++|+++-+   ++..  .+-.+-+-+|..+ ...++.    +++..+..+-...|++.--.--|.
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~q---nL~i--~~~~~iFdIA~~~-kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~  148 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQ---NLHI--YNPEDIFDIAFAK-KDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLE  148 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhh---ccCC--CCchhhhhhhhhc-cchhHHHHHHHHHHhhcccccccCHHHHHHHHHH
Confidence            46788899999999999999833   2222  2223455667665 555542    222333211111100111113467


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010851           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (499)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  140 (499)
                      .|+..|-...|.-.|++|.+++.      +.|..|+..++-.|+.+++.
T Consensus       149 ~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  149 KAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            89999999999999999987753      79999999999999998875

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=88.57  E-value=0.48  Score=44.98  Aligned_cols=53  Identities=9%  Similarity=-0.103  Sum_probs=42.3

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  496 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~  496 (499)
                      .....+|.+|-+.....+..||+|+..|.+|+..  .....||.|..-+-..++|
T Consensus       340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             chhhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence            3455799999999999999999999999999883  2345799997755555554

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.95  E-value=1.5  Score=33.13  Aligned_cols=48  Identities=21%  Similarity=0.142  Sum_probs=32.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHc
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL   73 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~   73 (499)
                      ..-|..|+..|+.|+++.+++.+ .++      ...|..|+.. .+-++++.|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~-H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKS-HNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHH-hhHHHHHHHHHh
Confidence            34567777777888777777654 211      3457777776 667777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=86.42  E-value=0.42  Score=54.19  Aligned_cols=48  Identities=25%  Similarity=0.772  Sum_probs=36.8

Q ss_pred             CccccccccccC---CceEEeCCCCchhhHHhHHHHhccCC----------ccccccccccc
Q 010851          444 SSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKG----------DCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~----------~Cp~Cr~~i~~  492 (499)
                      ....|.||+...   .-.+.+.|+|+| -..|..++...++          .||+|..+|..
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            346999999654   334667999999 9999888765432          59999998874

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.93  E-value=0.42  Score=44.95  Aligned_cols=42  Identities=24%  Similarity=0.589  Sum_probs=34.2

Q ss_pred             cccccccccCCceEEe-CCCCchhhHHhHHH-HhccCCccccccc
Q 010851          446 SSCVICWEAPVEGACV-PCGHMAGCMSCLSE-IKAKKGDCPVCRT  488 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~-~~~~~~~Cp~Cr~  488 (499)
                      ..|+.|......++-. -|+|.| |.+|+.. +......||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence            6899999988888777 588999 9999975 4444568999976

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=85.92  E-value=0.23  Score=48.90  Aligned_cols=53  Identities=28%  Similarity=0.627  Sum_probs=0.0

Q ss_pred             cccccccccc-------------------CCceEEeCCCCchhhHHhHHHHhcc---------CCccccccccccc---e
Q 010851          445 SSSCVICWEA-------------------PVEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKINQ---V  493 (499)
Q Consensus       445 ~~~C~iC~~~-------------------~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~Cp~Cr~~i~~---~  493 (499)
                      ...|++|+..                   +...+|.||||++ =...+.-|.+.         ...||.|-.++..   +
T Consensus       328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~  406 (416)
T PF04710_consen  328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY  406 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence            6799999852                   3445678999997 56666666652         1369999999874   6


Q ss_pred             eEeee
Q 010851          494 IRLYT  498 (499)
Q Consensus       494 ~~~~~  498 (499)
                      +++++
T Consensus       407 vrLiF  411 (416)
T PF04710_consen  407 VRLIF  411 (416)
T ss_dssp             -----
T ss_pred             eEEEE
Confidence            77754

; PDB: 3EGB_B 3EGA_A.

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=83.70  E-value=1.3  Score=44.06  Aligned_cols=26  Identities=38%  Similarity=0.848  Sum_probs=19.2

Q ss_pred             CchhhHHhHHHHhcc-------------CCcccccccccc
Q 010851          465 HMAGCMSCLSEIKAK-------------KGDCPVCRTKIN  491 (499)
Q Consensus       465 H~~~C~~C~~~~~~~-------------~~~Cp~Cr~~i~  491 (499)
                      -+. |.+|.-+|-..             +..||.||+.++
T Consensus       313 PmW-C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  313 PMW-CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             chH-HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            344 99999887642             236999999875

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.51  E-value=0.74  Score=45.50  Aligned_cols=40  Identities=23%  Similarity=0.486  Sum_probs=30.9

Q ss_pred             eEEeCCCCchhhHHhHHHHhccC---Ccccccccccc--ceeEeee
Q 010851          458 GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN--QVIRLYT  498 (499)
Q Consensus       458 ~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i~--~~~~~~~  498 (499)
                      +.-+.|||+. |.+-+.++.+..   -+||+|-....  +..+||+
T Consensus       350 Pm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F  394 (394)
T KOG2817|consen  350 PMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF  394 (394)
T ss_pred             Ceeeecccee-cHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence            5667899999 999999998763   48999976553  5666653

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=83.26  E-value=0.87  Score=35.84  Aligned_cols=30  Identities=23%  Similarity=0.484  Sum_probs=26.1

Q ss_pred             EEeCCCCchhhHHhHHHHhccCCcccccccc
Q 010851          459 ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK  489 (499)
Q Consensus       459 ~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~  489 (499)
                      +---|.|.| -..|+.+|.+++..||+|.+.
T Consensus        77 aWG~CNHaF-H~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   77 AWGVCNHAF-HFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             EeeecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence            334799999 999999999999999999764

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=83.20  E-value=0.46  Score=38.55  Aligned_cols=30  Identities=30%  Similarity=0.780  Sum_probs=23.7

Q ss_pred             CccccccccccCCceEE--eCCCCchhhHHhHH
Q 010851          444 SSSSCVICWEAPVEGAC--VPCGHMAGCMSCLS  474 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~--~pCgH~~~C~~C~~  474 (499)
                      ....|.+|.......+|  .||||.+ ...|..
T Consensus        77 ~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence            34689999998865544  4999999 998865

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.65  E-value=2  Score=32.49  Aligned_cols=46  Identities=13%  Similarity=0.072  Sum_probs=27.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        89 pL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      -|..|+..|+.|+++.+++.+ .+   +   ...|..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~---~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KP---D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-cc---H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            456666666666666666543 11   1   3356666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=80.43  E-value=2  Score=40.98  Aligned_cols=52  Identities=25%  Similarity=0.562  Sum_probs=32.6

Q ss_pred             CccccccccccC-------------------CceEEeCCCCchhhHHhHHHHhcc---------CCcccccccccc---c
Q 010851          444 SSSSCVICWEAP-------------------VEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKIN---Q  492 (499)
Q Consensus       444 ~~~~C~iC~~~~-------------------~~~~~~pCgH~~~C~~C~~~~~~~---------~~~Cp~Cr~~i~---~  492 (499)
                      .+++|++|+..-                   .+-.|-||||++ -..=..-|.+.         ...||.|-..+.   .
T Consensus       340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~  418 (429)
T KOG3842|consen  340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQG  418 (429)
T ss_pred             ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhccCCc
Confidence            467999998642                   333567999995 33333444432         135999988775   3


Q ss_pred             eeEe
Q 010851          493 VIRL  496 (499)
Q Consensus       493 ~~~~  496 (499)
                      +|++
T Consensus       419 ~ikl  422 (429)
T KOG3842|consen  419 YIKL  422 (429)
T ss_pred             eEEE
Confidence            5554

>PHA03096 p28-like protein; Provisional

Probab=80.09  E-value=1.1  Score=43.08  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             cccccccccCCc--------eEEeCCCCchhhHHhHHHHhccC------Cccccccccc
Q 010851          446 SSCVICWEAPVE--------GACVPCGHMAGCMSCLSEIKAKK------GDCPVCRTKI  490 (499)
Q Consensus       446 ~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~~~~~------~~Cp~Cr~~i  490 (499)
                      ..|.||++....        ..+-.|.|.| |..|+..|...+      +.||.|+..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence            489999986532        2345899999 999999888642      2455555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	499
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		5e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		6e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		9e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-05
2yhn_A	79	The Idol-Ube2d Complex Mediates Sterol-Dependent De		3e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-04
2hdp_A	63	Solution Structure Of Hdm2 Ring Finger Domain Lengt		2e-04
2vje_A	64	Crystal Structure Of The Mdm2-Mdmx Ring Domain Hete		2e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-04
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		6e-04
1uoh_A	226	Human Gankyrin Length = 226		6e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-04

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + ++ L S+GA +   D +G+TPL  A  ++G   V K LI  GA++NA 
Sbjct: 41  LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA-ENGHKEVVKLLISKGADVNAK 99
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              GR  TPLHHAA+ G +  V+LL+S GA+    + D  T L +AR  G+  VV+ +E 
Sbjct: 100 DSDGR--TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 141 HICYFCGWL 149
                 GWL
Sbjct: 158 Q----GGWL 162

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + ++ L S+GA +   D +G+TPL  A  + G   + K LI  GA++NA 
Sbjct: 41  LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE-GHKEIVKLLISKGADVNAK 99
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              GR  TPLH+AAK G +  V+LL+S GA+    + D  T L +AR  G+  +V+ +E 
Sbjct: 100 DSDGR--TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 141 HICYFCGWL 149
                 GWL
Sbjct: 158 Q----GGWL 162

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+ +
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + ++ L SQGA     D +GKTPL +A  ++G   V K L+  GA+ NA 
Sbjct: 41  LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA-ENGHKEVVKLLLSQGADPNAK 99
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              G+  TPLH AA+ G +  V+LLLS GA+    + D  T L +AR  G+  VV+ +E 
Sbjct: 100 DSDGK--TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 141 HICYFCGWLR 150
                 GWL 
Sbjct: 158 Q----GGWLE 163

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 70  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 82  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 70  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + ++ L S+GA     D +G+TPL  A  ++G   + K L+  GA+ NA 
Sbjct: 41  LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-ENGHKEIVKLLLSKGADPNAK 99
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              GR  TPLH+AA+ G +  V+LLLS GA+    + D  T L +AR  G+  +V+ +E 
Sbjct: 100 DSDGR--TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 141 HICYFCGWL 149
                 GWL
Sbjct: 158 Q----GGWL 162

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D +G TPL +A   +G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNATDNDGYTPLHLAA-SNGHLEIVEVLLKNGADVNA--SDLTG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    ++D HT L +A   GH+ +V  +  H
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A  + G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58
Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAI 138
           A+   ++ +  T L +A   GH+ VV+ +
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNAEDTYGDTPLHLAAR-VGHLEIVEVLLKNGADVNAL--DFSG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AAKRG    V +LL  GA+    +    T L +A   GH+ +V  +
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA+     G
Sbjct: 24  AGQDDEVRILMANGADVNATDWLGHTPLHLAAK-TGHLEIVEVLLKYGADVNAWD--NYG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA  G    V +LL  GA+   ++ +  T L +A   GH+ +V  +
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NAY     G
Sbjct: 24  AGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDT--LG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA  G    V +LL  GA+   ++D+  T L +A  +GH+ +V  +
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 8/109 (7%)
Query: 31  DAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           + ++ L  +GA ++ +D K G++PLI A  ++ L ++ + L++ GAN+NA    G   + 
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNAQMYSG--SSA 186
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCH--TALGVARIKGHINVVR 136
           LH A+ RGL P VR L+  GA++ ++N  CH  T L VAR +  I+++R
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKN--CHNDTPLMVARSRRVIDILR 233

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA     D  G+TPL +A    G + + + L+  GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADANAYDHYGRTPLHMAAA-VGHLEIVEVLLRNGADVNAVDTNGT- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+   ++    T L +A   GH+ +V  +  H
Sbjct: 70  -TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  GKTPL +A +  G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAI-KGHLEIVEVLLKHGADVNAA 76
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G TPLH AA  G    V +LL  GA+    +    T L +A   GH+ +V  +
Sbjct: 77  DK--MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           W  K+G TPL  A  + G     K L+  GA++NA    G   TPLH AAK G    V+L
Sbjct: 4   WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHAEIVKL 60
Query: 105 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           LL+ GA+   R+ D +T   +A+  GH  +V+ +++
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAY-FGHLEIVEVLLKNGADVNA- 75
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G TPLH AA RG    V +LL  GA+    + +  T L +A   GH+ +V  +  
Sbjct: 76  -DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 141 H 141
           H
Sbjct: 135 H 135

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A  + G + + + L++ GA++NA 
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAAN-GQLEIVEVLLKNGADVNAS 68
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              G   TPLH AA  G    V +LL  GA+    +    T L +A + G + +V  +  
Sbjct: 69  DSAGI--TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 141 H 141
           H
Sbjct: 127 H 127

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           +G  +  + L+  GA++NA    G   TPLH AA  G    V +LL  GA+    +    
Sbjct: 16  AGQDDEVRILMANGADVNATDDNGL--TPLHLAAANGQLEIVEVLLKNGADVNASDSAGI 73
Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165
           T L +A   GH+ +V  +  H      + R  + P  L AL+ QL
Sbjct: 74  TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQL 118

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAH-FGHLEIVEVLLKNGADVNAK 76
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G TPLH AA+RG    V +LL  GA+    +    T L +A  +GH+ +V  +
Sbjct: 77  DS--LGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAI 76
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G TPLH AA  G    V +LL  GA+    +    T L +A I GH+ +V  +  
Sbjct: 77  DI--MGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 141 H 141
           H
Sbjct: 135 H 135

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAI 76
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G TPLH AA  G    V +LL  GA+    +    T L +A I GH+ +V  +  
Sbjct: 77  DI--XGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 141 H 141
           H
Sbjct: 135 H 135

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGADVNAV 76
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
              G   TPL  AA  G    V +LL  GA+    + + HT L +A + GH+ +V  +
Sbjct: 77  DHAGM--TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +  +D  G TPL +A + SG + + + L++ GA+++A 
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAV-SGHLEIVEVLLKHGADVDAA 76
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G TPLH AA  G    V +LL  GA+    +    T L +A  +GH+ +V  +
Sbjct: 77  DV--YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y     GG
Sbjct: 63  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 119
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+     
Sbjct: 120 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 179
Query: 148 WLRE 151
            ++E
Sbjct: 180 NIKE 183

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNASDSWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y     GG
Sbjct: 47  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+     
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Query: 148 WLRE 151
            ++E
Sbjct: 164 NIKE 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D +G TPL +A    G   + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAW-IGHPEIVEVLLKHGADVNAR 76
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              G   TPLH AA  G    V +LL  GA+   ++    T L +A  +GH+ +V  +  
Sbjct: 77  DTDGW--TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 141 H 141
           H
Sbjct: 135 H 135

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A   SG + + + L++ GA+++A    G  
Sbjct: 24  AGQDDEVRILMANGADVNAADNTGTTPLHLAAY-SGHLEIVEVLLKHGADVDASDVFGY- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    + D  T L +A   G++ +V  +  H
Sbjct: 82  -TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNARDIWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  +D++G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNALDEDGLTPLHLAA-QLGHLEIVEVLLKYGADVNA--EDNFG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA RG    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNASDIWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y     GG
Sbjct: 45  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 101
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+
Sbjct: 102 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V  G ++ I  L    A +   DK G TPL +A    G + + + L++ GA++NA 
Sbjct: 51  LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAY-RGHLEIVEVLLKYGADVNAM 109
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
               +G TPLH AA+ G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 110 DY--QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           +GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN  +P   G
Sbjct: 50  SGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANIN--QPDNEG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
             PLH AA  G       L+S GA+    N +  T L +
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D++G TPL +A  D   + + + L++ GA++NA+     G
Sbjct: 24  AGQDDEVRILMANGADVNANDRKGNTPLHLAA-DYDHLEIVEVLLKHGADVNAH--DNDG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK G TPL +A M+  L  + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHL-EIVEVLLKNGADVNAIDAIGE- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH  A  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V   ++D ++ L  +G S       G TPL +A   +  + VA++L++ G + NA 
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQYGGSANA- 240
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
               +G TPLH AA+ G    V LLLS  AN  + N    T L +   +GH+ V   +  
Sbjct: 241 -ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Query: 141 HICYFCGWLREFYGP 155
           H        R  Y P
Sbjct: 300 HGVMVDATTRMGYTP 314

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A M  G + + + L++ GA++NA   G  G
Sbjct: 24  AGQDDEVRILTANGADVNANDYWGHTPLHLAAM-LGHLEIVEVLLKNGADVNA--TGNTG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA       V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
           + LL+   I GD+ ++  L   G+     D  G TPL  AC + G + V + L++  A +
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC-NHGHLKVVELLLQHKALV 69
Query: 78  NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
           N    G +  +PLH AAK G    V+LLLS GA+
Sbjct: 70  NT--TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y     GG
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIY--DWNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           TPL +A +      V  LL+ GA+     D  +T + +A   G+  V + IE+HI 
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y     GG
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIYD--WNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           TPL +A        V  LL+ GA+     D  +T + +A   G+  V + IE+HI 
Sbjct: 104 TPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
           C++C E  +     PCGH   C SC +++++    CPVCR+++  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVY 66

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 22  YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           + W +  GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA 
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 63
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            P     TPL  A   G    V+LLLS GA+  V+  D  TAL
Sbjct: 64  -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           L S+G+++   D  GKTPL+ + +  G   ++  L+E GAN+N     G   TPL  A+K
Sbjct: 87  LLSKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASK 143
Query: 96  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            G    V+ LL  GA+   R+    TA   ARI G   V++
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L++  + +  +++ + L+E GAN+N     G G TPLH+A +   E  V LLL  GA+ +
Sbjct: 28  LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 114 VRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 160
           +R  +  T   +A I G + +++   S     + C F G+       +F+EA
Sbjct: 87  LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 132

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           MN   + Q+K   L+    AG VD    L   GA+++   ++ +TPL+ A  ++ L    
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL-EAV 60
Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
           K LI+ GA ++       G T LH AAK+G    V+ LLS G   +   DD
Sbjct: 61  KYLIKAGALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D+ G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAV--DAIG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
            TPLH AA  G      +LL  GA+   ++    TA  ++
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L++  + +  +++ + L+E GAN+N     G G TPLH+A +   E  V LLL  GA+ +
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 114 VRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 160
           +R  +  T   +A I G + +++   S     + C F G+       +F+EA
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 112

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGXDEIVKALLVKGAHVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V     HI  F
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV-----HILLF 160

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 22  YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           + W +  GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA 
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 68
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            P     TPL  A   G    V+LLLS GA+  V+  D  TA 
Sbjct: 69  -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+   + G  D I  L   GA+    + +   PL +AC   G   V K L++  A  N  
Sbjct: 90  LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQVVKCLLDSNAKPN-- 146
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           +    G TPL +A   G    V LLL  GA+    N+  +TAL  A I+ H+ VV  +  
Sbjct: 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL 206
Query: 141 H 141
           H
Sbjct: 207 H 207

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 55  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 111
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLVKGAHVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V     HI  F
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV-----HILLF 160

>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain Length = 63

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 448 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
           CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 10  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61

>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer Length = 64

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 448 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
           CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 11  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 57  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 113
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 114 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 59  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 115
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 116 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA +NA      G
Sbjct: 51  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQ--NG 107
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ ++  +
Sbjct: 108 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 447 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
           +C +C +  V    +PCGH+  C  C   ++     CP+CR+ I   +R +
Sbjct: 26  TCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIKGTVRTF 72

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA +NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ ++  +
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
          AG  D +R L + GA +   DK G TPL +A  + G + V K L+E GA++NA    G+
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVNAQDKFGK 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	499
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-09
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	1e-17
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	3e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	9e-17
2rfa_A	232	Transient receptor potential cation channel subfa	3e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	9e-14
2rfa_A	232	Transient receptor potential cation channel subfa	3e-12
2rfa_A	232	Transient receptor potential cation channel subfa	5e-05
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	7e-16
2pnn_A	273	Transient receptor potential cation channel subfa	3e-15
2pnn_A	273	Transient receptor potential cation channel subfa	4e-14
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-10
2pnn_A	273	Transient receptor potential cation channel subfa	3e-10
2etb_A	256	Transient receptor potential cation channel subfam	6e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	1e-11
2etb_A	256	Transient receptor potential cation channel subfam	8e-06
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	1e-14
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	8e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-04
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	8e-09
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	5e-08
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	7e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	9e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	4e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	9e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	6e-04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	9e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (257), Expect = 4e-26
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD+ ++  L   G+     D  G TPL  AC   G + V + L++  A +N    G +  
Sbjct: 21  GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNT--TGYQND 77

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +PLH AAK G    V+LLLS GA+    N      +     +   +++   E +
Sbjct: 78  SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 79.0 bits (196), Expect = 8e-18
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           +  G+T L +A    G I   + L++ G++ N     G   TPLH A   G    V LLL
Sbjct: 7   NHRGETLLHIAS-IKGDIPSVEYLLQNGSDPNVKDHAGW--TPLHEACNHGHLKVVELLL 63

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
              A          + L  A   GH+++V+
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVK 93

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L    A +     +  +PL  A   +G +++ K L+  GA+ NA    G   
Sbjct: 54  GHLKVVELLLQHKALVNTTGYQNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGL-- 110

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P+ +     ++  + L     ++
Sbjct: 111 RPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G +        RG T LH A+ +G  P+V  LL  G++  V++    T L  A   GH+ 
Sbjct: 1   GIDPFT---NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK 57

Query: 134 VVR 136
           VV 
Sbjct: 58  VVE 60

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y   G   
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYDWNGG-- 103

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A +      V  LL+ GA+     D  +T + +A   G+  V + IE+H
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 4e-22
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 28  GDVDAIRALRSQGASLE-WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G++D ++    +G +L    D+ G TPLI A    G I   + L+E GA+ +        
Sbjct: 13  GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHILAKERE- 70

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            + L  A+  G    V LLL    +  + + +  T L  A    H+  V 
Sbjct: 71  -SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.4 bits (197), Expect = 1e-17
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +  L  +   +   D  G TPL+ A      +   + L+  GA++        G 
Sbjct: 80  GYTDIVGLLLERDVDINIYDWNGGTPLLYAVR-GNHVKCVEALLARGADLTT--EADSGY 136

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
           TP+  A   G     +++ +        N     
Sbjct: 137 TPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.8 bits (180), Expect = 3e-15
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
               +       G ++  K  +  G N +N     G   TPL  A+  G   TVR LL  
Sbjct: 2   DSLSIHQLAA-QGELDQLKEHLRKGDNLVNKPDERGF--TPLIWASAFGEIETVRFLLEW 58

Query: 109 GANALVRNDDCHTALGVARIKGHINVVR 136
           GA+  +   +  +AL +A   G+ ++V 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVG 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 98.6 bits (247), Expect = 2e-24
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y   G   
Sbjct: 47  GQIAVVEFLLQNGADPQLLGKGRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGG-- 103

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G++  +     Q   +   D+EG TPL+ A    G I V + L++ GA+      G    
Sbjct: 14  GEMLYLATRIEQENVINHTDEEGFTPLMWAAA-HGQIAVVEFLLQNGADPQLLGKGRE-- 70

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           + L  A  +G    V++LL CG +    + +  T L  A    H+  V+
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
               +       G +    T IE    IN     G   TPL  AA  G    V  LL  G
Sbjct: 3   NSLSVHQLAA-QGEMLYLATRIEQENVINHTDEEGF--TPLMWAAAHGQIAVVEFLLQNG 59

Query: 110 ANALVRNDDCHTALGVARIKGHINVVR 136
           A+  +      +AL +A  KG+ ++V+
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVK 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D ++ L   G  +   D  G TPL+ A      +   K L+E GA+         G 
Sbjct: 80  GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH-GNHVKCVKMLLESGADPTI--ETDSGY 136

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
             +  A   G     +++ S     L    +
Sbjct: 137 NSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.6 bits (151), Expect = 1e-11
 Identities = 11/53 (20%), Positives = 18/53 (33%)

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           G     +H  A +G    +   +         +++  T L  A   G I VV 
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE 53

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 98.7 bits (247), Expect = 1e-23
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G    +  L ++G  ++ MD+ G TPL+ A   +  ++  + L+    ++N         
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKN 178

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH A   G    + LLL  GAN   +N    +AL +A+ + ++ ++  ++  
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.4 bits (236), Expect = 3e-22
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  +  R L   G  +   DKE  T L  A + +  I++ K  I  GA ++    G    
Sbjct: 20  GIYERCRELVEAGYDVRQPDKENVTLLHWAAI-NNRIDLVKYYISKGAIVDQ-LGGDLNS 77

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH A ++G    V  L+  GA+  + + +  + + +A   GH ++V 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.2 bits (212), Expect = 5e-19
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
             +D ++   S+GA ++ +  +   TPL  A    G +++   L++ GA+ +     G G
Sbjct: 53  NRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT-RQGHLSMVVQLMKYGADPSL--IDGEG 109

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESH 141
            + +H AA+ G    V  L++ G +  + + +  T L  A  + H ++  R + + 
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.7 bits (203), Expect = 9e-18
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           +D      ++ A    G+    + L+E G ++    P     T LH AA       V+  
Sbjct: 5   IDDYSTWDIVKATQ-YGIYERCRELVEAGYDVRQ--PDKENVTLLHWAAINNRIDLVKYY 61

Query: 106 LSCGANALVRNDDC-HTALGVARIKGHINVVR 136
           +S GA       D   T L  A  +GH+++V 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 3e-14
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 30  VDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           VD  R L +   S+   DK    T L  A + +G   V   L+E GAN++A     +G +
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAGANVDA--QNIKGES 212

Query: 89  PLHHAAKRGLEPTVRLLLSCGAN 111
            L  A +R     +  L      
Sbjct: 213 ALDLAKQRKNVWMINHLQEARQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 76  NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           ++            +  A + G+    R L+  G +    + +  T L  A I   I++V
Sbjct: 1   HMTH--IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV 58

Query: 136 R 136
           +
Sbjct: 59  K 59

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.0 bits (113), Expect = 4e-06
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           G+   I  L   GA+++  + +G++ L +A      + +   L E       
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQ-RKNVWMINHLQEARQAKGY 238

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 93.9 bits (235), Expect = 2e-23
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A+   ++ +  T L +A   GH+ VV+ +   
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A   +G + V K L+E GA++NA    GR  
Sbjct: 46  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGR-- 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA 110
           TPLH AA+ G    V+LLL  GA
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGA 125

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 94.4 bits (236), Expect = 3e-23
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ +R L   GA    +++ G+ P+ V  M  G   VA+ L+  GA  N         
Sbjct: 23  GQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNC--ADPATL 78

Query: 88  T-PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T P+H AA+ G   T+ +L   GA   V +      + +A  +GH ++ R + + 
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 78.6 bits (195), Expect = 8e-18
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
              +  +       L  A    G +   + L+E GA+ NA    GR   P+        +
Sbjct: 2   SPGIHMLGGSSDAGLATAAA-RGQVETVRQLLEAGADPNALNRFGR--RPIQVMMMGSAQ 58

Query: 100 PTVRLLLSCGANALVRNDDCHT-ALGVARIKGHINVVR 136
               LLL  GA     +    T  +  A  +G ++ + 
Sbjct: 59  -VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKT-PLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G       L   GA     D    T P+  A    G ++    L   GA ++       G
Sbjct: 55  GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDV--CDAWG 111

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGAN 111
             P+  A ++G     R L +   +
Sbjct: 112 RLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 62.1 bits (152), Expect = 7e-12
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
              I+    GG     L  AA RG   TVR LL  GA+    N      + V  + G   
Sbjct: 2   SPGIHM--LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQ 58

Query: 134 VVRAIESH 141
           V   +  H
Sbjct: 59  VAELLLLH 66

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 94.9 bits (237), Expect = 3e-23
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ +RAL   GA+    +  G+ P+ V  M  G   VA+ L+  GA  N         
Sbjct: 23  GRVEEVRALLEAGANPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAEPNC--ADPATL 78

Query: 88  T-PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T P+H AA+ G   T+ +L   GA   VR+      + +A   GH +V R + + 
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 82.9 bits (206), Expect = 5e-19
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 9/109 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKT-PLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G       L   GA     D    T P+  A    G ++    L   GA ++       G
Sbjct: 55  GSARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDV--RDAWG 111

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
             P+  A + G     R L +                 +   +G  ++ 
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            +     L  A    G +   + L+E GAN NA  P   G  P+             LLL
Sbjct: 9   MEPSADWLATAAA-RGRVEEVRALLEAGANPNA--PNSYGRRPIQVMMMGSAR-VAELLL 64

Query: 107 SCGANALVRNDDCHT-ALGVARIKGHINVVRA 137
             GA     +    T  +  A  +G ++ +  
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 71  IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           +E  A  +           L  AA RG    VR LL  GAN    N      + V  + G
Sbjct: 1   MEPAAGSSMEP----SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMG 55

Query: 131 HINVVRAIESH 141
              V   +  H
Sbjct: 56  SARVAELLLLH 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 93.6 bits (234), Expect = 4e-23
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA  P     
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA--PDKHHI 74

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPL  A   G    V+LLLS GA+  V+  D  TA      +    +++
Sbjct: 75  TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.8 bits (193), Expect = 1e-17
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           +        + A   +G ++  K  +  G ++N    GGR   PLH+AA  G    +  L
Sbjct: 3   LGSMCDKEFMWAL-KNGDLDEVKDYVAKGEDVNRTLEGGR--KPLHYAADCGQLEILEFL 59

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVR 136
           L  GA+    +    T L  A  +GH++ V+
Sbjct: 60  LLKGADINAPDKHHITPLLSAVYEGHVSCVK 90

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.4 bits (236), Expect = 4e-23
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRAL-RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           GDV  +R L   +    + +++ GKT L V    S    +A  L++ GA+ N     G  
Sbjct: 13  GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS--TAIALELLKQGASPNVQDTSGT- 69

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +P+H AA+ G   T+++L+  GA+  V +      + +A  +GH  VV  + + 
Sbjct: 70  -SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 92.1 bits (230), Expect = 3e-22
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G       L  QGAS    D  G +P+  A   +G ++  K L+E GA++N   P G G 
Sbjct: 46  GSTAIALELLKQGASPNVQDTSGTSPVHDAA-RTGFLDTLKVLVEHGADVNV--PDGTGA 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
            P+H A + G    V  L +  ++   R+    T L +A  +G  ++V  ++ H+
Sbjct: 103 LPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 1e-12
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
               L  A     +  V + L     + +A      G T L              LL  G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMMFGSTA-IALELLKQG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A+  V++    + +  A   G ++ ++ +  H
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 85  RGGTPLHHAAKRG-LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           R G  L  AA RG ++   RLL     +    N    TAL V  + G   +   +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQ 57

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  100 bits (251), Expect = 5e-23
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V     L   G  ++   + G TPL VA    G I + K L++  A++NA      G 
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVAS-HYGNIKLVKFLLQHQADVNA--KTKLGY 345

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +PLH AA++G    V LLL  GA+    + D  T L +A+  G+I+V  
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.1 bits (248), Expect = 1e-22
 Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ + AL  + AS   M K+G TPL VA    G + VA+ L+E  A+ NA   G  G 
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAK-YGKVRVAELLLERDAHPNA--AGKNGL 180

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH A        V+LLL  G +      + +T L +A  +  + V R
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.7 bits (247), Expect = 2e-22
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           S G S     + G TPL VA    G + + K L++ GA+ N      +  TPLH AA+ G
Sbjct: 2   SPGISGGGGGESGLTPLHVASF-MGHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAG 58

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                + LL   A    +  D  T L  A   GH N+V+ +  +
Sbjct: 59  HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.7 bits (247), Expect = 2e-22
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  ++ L  +GAS    + + +TPL +A   +G   VAK L++  A +NA        
Sbjct: 25  GHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGHTEVAKYLLQNKAKVNAK--AKDDQ 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AA+ G    V+LLL   AN  +     HT L +A  +GH+  V 
Sbjct: 82  TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.9 bits (245), Expect = 3e-22
 Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
             AG  +  + L    A +    K+ +TPL  A    G  N+ K L+E  AN N      
Sbjct: 55  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPNL--ATT 111

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            G TPLH AA+ G   TV  LL   A+         T L VA   G + V  
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.6 bits (244), Expect = 4e-22
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            ++D ++ L  +G S       G TPL +A      + VA++L++ G + NA     +G 
Sbjct: 190 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANA--ESVQGV 246

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA+ G    V LLLS  AN  + N    T L +   +GH+ V   +  H
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.2 bits (243), Expect = 6e-22
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L    A+       G TPL +A    G +     L+E  A+       G   
Sbjct: 91  GHTNMVKLLLENNANPNLATTAGHTPLHIAAR-EGHVETVLALLEKEASQACMTKKGF-- 147

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AAK G      LLL   A+      +  T L VA    ++++V+
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V+  R+L   G S      +G TPL +A    G   +   L+   AN N       G 
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQ-EGHAEMVALLLSKQANGNL--GNKSGL 279

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH  A+ G  P   +L+  G          +T L VA   G+I +V+
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L S+ A+    +K G TPL +     G + VA  LI+ G  ++A      G 
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDA--TTRMGY 312

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH A+  G    V+ LL   A+   +    ++ L  A  +GH ++V  +  +
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 4e-14
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G++  ++ L    A +    K G +PL  A    G  ++   L++ GA+ N       G 
Sbjct: 322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAA-QQGHTDIVTLLLKNGASPNE--VSSDGT 378

Query: 88  TPLHHAAKRGLEPTVRLL---LSCGANALVRNDDCHTALGVAR 127
           TPL  A + G      +L       +  LV +    +      
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.8 bits (237), Expect = 7e-23
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G    +  L  +GA +  M++   TPL +A    G  ++ + L++  A+INA      G 
Sbjct: 50  GRSAVVEMLIMRGARINVMNRGDDTPLHLAAS-HGHRDIVQKLLQYKADINA--VNEHGN 106

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            PLH+A   G +     L++ GA   + N      +  A+      +    E  
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
             E    +   C   G     +  ++   N +N     G   +PLH A + G    V +L
Sbjct: 2   SPEFMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGDDHGF--SPLHWACREGRSAVVEML 58

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +  GA   V N    T L +A   GH ++V+
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQ 89

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.0 bits (183), Expect = 1e-15
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 9/104 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D ++ L    A +  +++ G  PL  AC   G   VA+ L+  GA ++       G 
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSI--CNKYGE 139

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            P+  A     E         G N    N            KG 
Sbjct: 140 MPVDKAKAPLRELLRERAEKMGQNL---N---RIPYKDTFWKGT 177

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 97.2 bits (243), Expect = 1e-22
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  ++ L   GA +  +  +  TPL  AC+ SG  +    L++ GA++          
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLLLQHGASVQP---ESDLA 158

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +P+H AA+RG    V  L++ G N   +     T L +A        V+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.4 bits (241), Expect = 1e-22
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ + +L + G +++       TPL +AC  +      K L+E GA++N  +      
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACE-NQQRACVKKLLESGADVNQGK---GQD 223

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           +PLH   +   E    LL+  GA+   +N +    + +   +  +  +
Sbjct: 224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.9 bits (232), Expect = 3e-21
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G   ++R L SQG ++  +  +  +PL  AC+  G ++  K L++ GA +N         
Sbjct: 70  GHQLSLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQVNG--VTADWH 126

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A   G    V LLL  GA+    +D   + +  A  +GH+  V ++ ++
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAY 179

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.0 bits (214), Expect = 7e-19
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +  L   GAS++  + +  +P+  A    G +    +LI  G NI+        G
Sbjct: 136 GSWDCVNLLLQHGASVQ-PESDLASPIHEAAR-RGHVECVNSLIAYGGNIDH--KISHLG 191

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESH 141
           TPL+ A +      V+ LL  GA+  V +     + L          +   +   
Sbjct: 192 TPLYLACENQQRACVKKLLESGAD--VNQGKGQDSPLHAVVRTASEELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                +P+  A +  G     + LI  G  +N         +PLH A   G    V++LL
Sbjct: 56  AVSDWSPMHEAAI-HGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGGHLSCVKILL 112

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
             GA       D HT L  A + G  + V 
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVN 142

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-----GKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
                   L  +G+ +  MD +     G  P                L+      +A   
Sbjct: 6   HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF------PGIRLLSNPLMGDAVS- 58

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                +P+H AA  G + ++R L+S G    +   D  + L  A + GH++ V+ +  H
Sbjct: 59  ---DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                ++ L   GA +    K   +PL      +    +A  L++ GA+  A      G 
Sbjct: 201 QQRACVKKLLESGADVN-QGKGQDSPLHAVVR-TASEELACLLMDFGADTQA--KNAEGK 256

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P+              L   GA+
Sbjct: 257 RPVELVPPESPL-AQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
              +    L   GA  +  + EGK P+ +   +S L      L   GA++   +P
Sbjct: 233 ASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREGASLPKPKP 285

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 96.5 bits (241), Expect = 1e-22
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 2/114 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            + +           LE  + +G TPL VA +      + + L + GA++N       G 
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVI-HKDAEMVRLLRDAGADLNK-PEPTCGR 193

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH A +      + LLL  GA+   R     T LG A ++ +  + R + +H
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
            D + +R LR  GA L   +   G+TPL +A   +   +V + L++ GA+  A   GGR 
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPTARMYGGR- 226

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            TPL  A  R      RLL + GA       D  +    +      +  
Sbjct: 227 -TPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.5 bits (210), Expect = 2e-18
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 43  LEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN---INAYRPGGRGGTPLHHAAKRGLE 99
             ++ ++G T L +A +          L+   A    ++       G T LH AA  G  
Sbjct: 2   FGYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILGEA 58

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TV  L + GA  LV     HTAL +A           +   
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 13/124 (10%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN------ 78
            I G+   +  L + GA +   ++ G T L +AC        A  L++   +        
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDT 111

Query: 79  -----AYRPGGRGGTPLHHAAKRGLEP-TVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
                          P    ++   E                 N D HT L VA I    
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 133 NVVR 136
            +VR
Sbjct: 172 EMVR 175

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 3/80 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L   GA        G+TPL  A +      +A+ L   GA       GG   
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALL-RPNPILARLLRAHGAPEPE--DGGDKL 259

Query: 88  TPLHHAAKRGLEPTVRLLLS 107
           +P   +              
Sbjct: 260 SPCSSSGSDSDSDNRDEGDE 279

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 95.0 bits (237), Expect = 1e-22
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRG 86
           G++  +R        +  +DK G T L  AC   G  ++ + L  +    +N       G
Sbjct: 84  GNLSWLRECLDNRVGVNGLDKAGSTALYWAC-HGGHKDIVEMLFTQPNIELNQ--QNKLG 140

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            T LH AA +G    V+LLL+ GA   +RN +   A  +A      ++++  +  
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 28  GDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G  D +  L +Q    L   +K G T L  A    G  ++ + L+  GA  +        
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW-KGYADIVQLLLAKGARTDL--RNIEK 173

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
                 A        ++      A   + N + +     + ++ H
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.0 bits (180), Expect = 6e-15
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 8/108 (7%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +      L  +   + ++     T               +T +     +          
Sbjct: 23  FEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK------GRTGLIPSNYVAE--QAESID 74

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            PLH AAKRG    +R  L         +    TAL  A   GH ++V
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 8/90 (8%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            K G+  +  A            L     +I          T       +G     R  L
Sbjct: 9   VKPGQVKVFRALYT-FEPRTPDELYIEEGDIIY--ITDMSDTNWWKGTSKG-----RTGL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
                   + +     L  A  +G+++ +R
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLR 90

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144
            G   +  A       T   L     + +   D   T       KG   ++ +       
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 145 FCGW 148
               
Sbjct: 71  ESID 74

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 94.8 bits (237), Expect = 2e-22
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             VD ++ L S+G+ +   D E    L  A   SG +++A+ L+    +++A      G 
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAF-SGCVDIAEILLAAKCDLHA--VNIHGD 178

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +PLH AA+      V L LS  ++  ++N +  T L  A +   +     +   
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.9 bits (219), Expect = 6e-20
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
             ++A++ L   GA ++  D EG T L +A    G   V + L+  G  ++N    GG  
Sbjct: 55  NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGW- 112

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TP+  A +      V+LLLS G++  +R+++ +  L  A   G +++   + + 
Sbjct: 113 -TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.7 bits (216), Expect = 1e-19
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD    L   GA+++   ++ +TPL+ A   +  +   K LI+ GA ++       G 
Sbjct: 22  GHVDICHMLVQAGANIDTCSEDQRTPLMEAAE-NNHLEAVKYLIKAGALVDP--KDAEGS 78

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AAK+G    V+ LLS G    N   ++D   T +  A    H+++V+ + S 
Sbjct: 79  TCLHLAAKKGHYEVVQYLLSNGQMDVNC--QDDGGWTPMIWATEYKHVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 5e-18
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            +  ++PL  A   +G +++   L++ GANI+         TPL  AA+      V+ L+
Sbjct: 8   HQNKRSPLHAAAE-AGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA    ++ +  T L +A  KGH  VV+ + S+
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.8 bits (180), Expect = 1e-14
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD    L +    L  ++  G +PL +A       +     +   +++        G 
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR-ENRYDCVVLFLSRDSDVTL--KNKEGE 211

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANA 112
           TPL  A+      +   +     ++
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.0 bits (139), Expect = 2e-09
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 75  ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
            N        R  +PLH AA+ G      +L+  GAN    ++D  T L  A    H+  
Sbjct: 2   MNFKMEHQNKR--SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 135 VRAIESH 141
           V+ +   
Sbjct: 60  VKYLIKA 66

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            D  A+  L  +   ++ +D+ G+T L+      G     + L E GA+++  R    G 
Sbjct: 56  ADEQALSQL-LEDRDVDAVDENGRTALLFVAG-LGSDKCVRLLAEAGADLDH-RDMRGGL 112

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AA       V  L+  GA+  V ++   TAL +AR              
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G    +R L   GA L+  D   G T L +A        V + L+ELGA+I       RG
Sbjct: 88  GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG-YVRPEVVEALVELGADIEV--EDERG 144

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            T L  A +          +  G        +    +   ++  +  V   +E  
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRI---GLEKVINVLEGQVFEYAEVDEIVEKR 196

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+V+ I   R+          EG    ++   D G          + A++ +        
Sbjct: 1   GEVNKIIGSRT--------AGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVS-----EYE 46

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TP   AA++  E  +  LL    +    +++  TAL      G    VR +   
Sbjct: 47  TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 23/125 (18%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
              + + AL   GA +E  D+ G T L +A  +          ++ G  I          
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAR-EILKTTPKGNPMQFGRRIGLEKVINVLE 180

Query: 80  -----YRPG-------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
                Y          G+G    +    +       +     A  + ++ +    L  A 
Sbjct: 181 GQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAV 238

Query: 128 IKGHI 132
            +  I
Sbjct: 239 AESVI 243

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.1 bits (235), Expect = 1e-21
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN   P   G 
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQ--PDNEGW 107

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            PLH AA  G       L+S GA+    N +  T L +A  +    ++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.0 bits (214), Expect = 6e-19
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 31  DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90
           DA + L S   +     K G T L VA    G   V K LI+   ++N     G   TPL
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGW--TPL 236

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA--RIKGHINVVRA 137
           H AA  G E   R+L+    +    N    TA  VA   I G++  ++ 
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 9/121 (7%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+Q  I  +VD ++ L   GA++   D EG  PL  A    G +++A+ LI  GA++ A 
Sbjct: 77  LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS-CGYLDIAEYLISQGAHVGA- 134

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G TPL  A +  +E  ++  ++          D   A          +  + + S
Sbjct: 135 -VNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWLNS 187

Query: 141 H 141
            
Sbjct: 188 G 188

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 5e-16
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 31  DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90
             +     +    +    +G   L  AC  SG       L+E GA+IN     G   T L
Sbjct: 22  TDLEPPVVKRKKTKVKFDDGAVFLA-ACS-SGDTEEVLRLLERGADINYANVDGL--TAL 77

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           H A        V+ L+  GAN    +++    L  A   G++++  
Sbjct: 78  HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 28/140 (20%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMD--------------------------S 61
           G +D    L SQGA +  ++ EG TPL +A  +                           
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176

Query: 62  GLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
            L +  + L     N   +   G   T LH AA +G    ++LL+    +  +++ D  T
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGG--TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234

Query: 122 ALGVARIKGHINVVRAIESH 141
            L  A   G     R +  +
Sbjct: 235 PLHAAAHWGKEEACRILVEN 254

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D + K    +     G     +  +               G     A   G    V  LL
Sbjct: 5   DAKQKRNEQLKRW-IGSETDLEPPVVKRKKTKV---KFDDGAVFLAACSSGDTEEVLRLL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+    N D  TAL  A I  ++++V+ +  +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L      +   D +G TPL  A    G     + L+E   ++ A    G+  
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEAVNKVGQ-- 266

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
           T    A +  L     L       
Sbjct: 267 TAFDVADEDILGYLEELQKKQNLL 290

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 93.7 bits (234), Expect = 1e-21
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
                 +++           D  G +    A      + +  TL+  GA  N        
Sbjct: 9   TWKSKQLKSF-LSSKDTFKADVHGHSASYYAIA-DNNVRLVCTLLNAGALKNLLE----N 62

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             PLH AA       V++LL  G +    +D  +TAL  A   G++  V+
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 89.1 bits (222), Expect = 6e-20
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +V  +  L + GA       E + PL  A        + K L+  G + +      +G 
Sbjct: 42  NNVRLVCTLLNAGALKN--LLENEFPLHQAAT-LEDTKIVKILLFSGLDDSQ--FDDKGN 96

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIESH 141
           T L++A   G   TV+L +      +        T+   A +   +++V    S 
Sbjct: 97  TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 81.0 bits (201), Expect = 3e-17
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEG-KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G++  ++    +   L +  K G KT    A M    +++    +    +          
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM-LNDVSIVSYFLSEIPSTFD---LAIL 161

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT-ALGVARIKGHINVVR 136
            + +H   K G    + LLL    +    N       + +A     I +++
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 12/115 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            DV  +    S+  S         + + +    +G +++   L++   + N         
Sbjct: 140 NDVSIVSYFLSEIPSTF-DLAILLSCIHITIK-NGHVDMMILLLDYMTSTNT--NNSLLF 195

Query: 88  TP-LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            P +  A        ++ L     N        ++A     +     + + I   
Sbjct: 196 IPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMIIEK 243

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 9/107 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD +  L     S    +     P I   +D+  I + + L +   NI          
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------- 222

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
           +              ++++         +      +        I  
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIIS 269

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 92.1 bits (230), Expect = 2e-21
 Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
              + ++ L  +GA ++ +D K G++PLI A  ++  +++ + L++ GAN+NA      G
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGANVNA--QMYSG 183

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            + LH A+ RGL P VR L+  GA++ ++N    T L VAR +  I+++R   + 
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 87.9 bits (219), Expect = 6e-20
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           +   +  G  L+  +   +TPL +A + + L +V + L+  GA+  A    G+  T  H 
Sbjct: 29  VNLFQQGGRELDIYNNLRQTPLHLAVI-TTLPSVVRLLVTAGASPMALDRHGQ--TAAHL 85

Query: 93  AAKRGLEPTVRLLLSCGANALV----RNDDCHTALGVARIKGHINVVR 136
           A +      +R LL   A   +    RN D  TAL VA        V+
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.8 bits (211), Expect = 7e-19
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIEL----GANINAYRPGGRGGTPLHHAAKRGLEPTV 102
           D++G TPL +A +  G +     L+ L    G  ++ Y       TPLH A    L   V
Sbjct: 6   DEDGDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVV 62

Query: 103 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           RLL++ GA+ +  +    TA  +A        +RA+   
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.1 bits (204), Expect = 6e-18
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYRPG 83
                +R L + GAS   +D+ G+T   +AC +       + L++  A    ++ A    
Sbjct: 57  TLPSVVRLLVTAGASPMALDRHGQTAAHLAC-EHRSPTCLRALLDSAAPGTLDLEARNYD 115

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESH 141
           G   T LH A     + TV+LLL  GA+    +     + L  A     +++V+ +  H
Sbjct: 116 GL--TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.3 bits (202), Expect = 1e-17
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             +  ++ L   GA++      G + L  A    GL+ + +TL+  GA+ +         
Sbjct: 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASG-RGLLPLVRTLVRSGADSSL--KNCHND 217

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
           TPL  A  R +   +R   +  A+
Sbjct: 218 TPLMVARSRRVIDILRGKATRPAS 241

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 90.1 bits (225), Expect = 2e-21
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ +  L   GA +  +D  G TPL +A    G + + + L++ GA++NA    G   
Sbjct: 58  GHLEIVEVLLKNGADVNAVDHAGMTPLRLAA-LFGHLEIVEVLLKNGADVNANDMEGH-- 114

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++  
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.3 bits (223), Expect = 4e-21
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA      G 
Sbjct: 25  GRDDEVRILMANGADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGADVNA--VDHAGM 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA  G    V +LL  GA+    + + HT L +A + GH+ +V  +  +
Sbjct: 82  TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 74.7 bits (185), Expect = 5e-16
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             +    L+ A   +G  +  + L+  GA++NA      G TPLH AA  G    V +LL
Sbjct: 11  GSDLGKKLLEAAR-AGRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+    +    T L +A + GH+ +V  +  +
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.3 bits (145), Expect = 1e-10
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G++ + +  G   G  L  AA+ G +  VR+L++ GA+    +    T L +A   GH+ 
Sbjct: 3   GSHHHHHH-GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 134 VVRAIESH 141
           +V  +  +
Sbjct: 62  IVEVLLKN 69

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 91.1 bits (227), Expect = 5e-21
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 28  GDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAKTLIELGANINAYR 81
           G + ++  L     +          +  G T L +A +  G + + + L+ LGA++NA +
Sbjct: 89  GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI-HGYLGIVELLVSLGADVNA-Q 146

Query: 82  PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               G T LH A        V LLL CGA+        ++   +   +    + + +   
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.6 bits (218), Expect = 6e-20
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           ++ IR ++   A L + +   +TPL +A + +    +A+ L+  G +        RG TP
Sbjct: 25  MEVIRQVKGDLAFLNFQNNLQQTPLHLAVI-TNQPEIAEALLGAGCDPEL--RDFRGNTP 81

Query: 90  LHHAAKRGLEPTVRLLLSCGANALV------RNDDCHTALGVARIKGHINVVR 136
           LH A ++G   +V +L        +       N + HT L +A I G++ +V 
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.8 bits (203), Expect = 6e-18
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 4/112 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
            I G +  +  L S GA +   +   G+T L +A  D    ++   L++ GA++N     
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV-DLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           G   +P      R      + L       L    +                 
Sbjct: 184 GY--SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 47  DKEGKTPLIVACM---DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVR 103
            ++G + L +A +    +  + V + +    A +N      +  TPLH A          
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ--TPLHLAVITNQPEIAE 62

Query: 104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            LL  G +  +R+   +T L +A  +G +  V  +   
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR--- 81
           VI    +   AL   G   E  D  G TPL +AC   G +     L +     + +    
Sbjct: 53  VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILK 111

Query: 82  -PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIE 139
                G T LH A+  G    V LL+S GA+   +   +  TAL +A    + ++V  + 
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

Query: 140 SH 141
             
Sbjct: 172 KC 173

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.8 bits (224), Expect = 6e-21
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L+     ++ +D EG TPL +A   +  I +AK LI+ GA+IN         
Sbjct: 17  DTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDIEIAKALIDRGADINL--QNSISD 73

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVR 136
           +P  +A  +G    +  +L      L   N     AL  A  KGHI+ V+
Sbjct: 74  SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.5 bits (205), Expect = 2e-18
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 28  GDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGR 85
           G  + +  +       L   ++ G   LI A    G I+  K L+E G  +I+       
Sbjct: 83  GRTEILAYMLKHATPDLNKHNRYGGNALIPAAE-KGHIDNVKLLLEDGREDIDF--QNDF 139

Query: 86  GGTPLHHAA-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           G T L  A       +  +  V+LL+  GA+  ++++   TA+  A  KG+  + + +  
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

Query: 141 H 141
           +
Sbjct: 200 Y 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.7 bits (203), Expect = 4e-18
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             E    L  A        V + L +    ++       G TPL+ A         + L+
Sbjct: 3   TYEVGALLEAANQR-DTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+  ++N    +    A  +G   ++  +  H
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 89.4 bits (223), Expect = 7e-21
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           S+G+++   D  GKTPL+ + +  G   ++  L+E GAN+N     G   TPL  A+K G
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASKYG 145

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               V+ LL  GA+   R+    TA   ARI G   V++     
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.1 bits (217), Expect = 5e-20
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  +AI  L      LE  D EG T LI A   +  + +A+ L+  G+N+N     G+  
Sbjct: 46  GMENAIDKLVENFDKLEDKDIEGSTALIWAVK-NNRLGIAEKLLSKGSNVNTKDFSGK-- 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPL  +   G       LL  GAN   RN +  T L VA   G   +V+
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 32  AIRALRSQGASL--EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
                 +Q       + D   +TPL+VACM  G+ N    L+E    +        G T 
Sbjct: 15  KDEKSINQNLDFLRNYRDSYNRTPLMVACM-LGMENAIDKLVENFDKLED--KDIEGSTA 71

Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           L  A K         LLS G+N   ++    T L  + I G+  + 
Sbjct: 72  LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.9 bits (149), Expect = 4e-11
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G+    MDK G+    +           +  I    +           TPL  A   G+E
Sbjct: 1   GSH---MDKNGEIVEKIK---------DEKSINQNLDFLRNYRDSYNRTPLMVACMLGME 48

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +  L+        ++ +  TAL  A     + +   + S 
Sbjct: 49  NAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 89.1 bits (222), Expect = 7e-21
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            D  A+  L  +   ++ +D+ G+T L+      G     + L E GA+++  R    G 
Sbjct: 55  ADEQALSQL-LEDRDVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDH-RDMRGGL 111

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AA       V  L+  GA+  V ++   TAL +AR              
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 75.6 bits (187), Expect = 3e-16
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 39  QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL 98
                     EG    ++   D G          + A++ +        TP   AA++  
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVS-----EYETPWWTAARKAD 56

Query: 99  EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           E  +  LL    +    +++  TAL      G    VR +   
Sbjct: 57  EQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 98

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G    +R L   GA L+  D + G T L +A        V + L+ELGA+I      G  
Sbjct: 87  GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG-YVRPEVVEALVELGADIEVEDERGL- 144

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGAN 111
            T L  A +          +  G  
Sbjct: 145 -TALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 4/65 (6%)

Query: 72  ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
           E+   I + R  G G        K G  P+        A+      +  T    A  K  
Sbjct: 1   EVNKIIGS-RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKAD 56

Query: 132 INVVR 136
              + 
Sbjct: 57  EQALS 61

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 90.6 bits (226), Expect = 1e-20
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L +  A +  +D  GK+ L  A      ++ A  L++ GAN +      R  
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAA-VNNVDAAVVLLKNGANKDM--QNNREE 191

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA+ G   T ++LL   AN  + +        +A+ + H ++VR ++  
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
              DA + L    A     D  G+TPL  A   +    V + LI   A +++A    G  
Sbjct: 68  SRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGT- 125

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPL  AA+  +E  +  L++  A+    +D   +AL  A    +++    +  +
Sbjct: 126 -TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.9 bits (193), Expect = 2e-16
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +VDA   L   GA+ +  +   +TPL +A  + G    AK L++  AN +         
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDI--TDHMDR 224

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P   A +R     VRLL     +
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.8 bits (185), Expect = 2e-15
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 47  DKEGKTPLIVACM------------DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94
             +G TPL++A              +     V    I  GA+++       G T LH AA
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAA 65

Query: 95  KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +       + LL   A+A ++++   T L  A       V +
Sbjct: 66  RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 46.3 bits (111), Expect = 9e-06
 Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78
           G  +  + L    A+ +  D   + P  +A  +    ++ + L     + +
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQ-ERMHHDIVRLLDLEHHHHH 250

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 92.2 bits (230), Expect = 1e-20
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V  ++ L   GA +   DK G  PL  AC   G   V + L++ GA +NA        
Sbjct: 69  NRVRIVQLLLQHGADVHAKDKGGLVPLHNACS-YGHYEVTELLLKHGACVNA--MDLWQF 125

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           TPLH AA +       LLLS GA+  + N    +A+ +A        +
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.4 bits (228), Expect = 2e-20
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 21  LYQWVIAGDVDAIRA-LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           L +   +G+ + + A L     +    D    TPL +A      + + + L++ GA+++A
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG-YNRVRIVQLLLQHGADVHA 86

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
              GG    PLH+A   G      LLL  GA     +    T L  A  K  + V  
Sbjct: 87  KDKGGL--VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.1 bits (222), Expect = 1e-19
 Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           L    A      +  K  L+ A        +   L  L  N +A    GR  TPLH AA 
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPLHLAAG 67

Query: 96  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                 V+LLL  GA+   ++      L  A   GH  V  
Sbjct: 68  YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 87.2 bits (217), Expect = 6e-19
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L  +GA++   +K+  TPL VA       +V + L + GA +NA      G 
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAE-RAHNDVMEVLHKHGAKMNA--LDSLGQ 281

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           T LH AA  G   T RLLLS G++  + +    TA  + 
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.9 bits (211), Expect = 4e-18
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACM--DSGLINVAKTLIELGANINAYRPGGR 85
            D+  ++   +         +  +T L  A          VA+ L+  GAN+N       
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE--KNKD 246

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             TPLH AA+R     + +L   GA     +    TAL  A + GH+   R + S+
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.7 bits (169), Expect = 7e-13
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D +  L   GA +  +D  G+T L  A + +G +   + L+  G++ +      +G 
Sbjct: 258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAAL-AGHLQTCRLLLSYGSDPSI--ISLQGF 314

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           T      +      V+ +LS      +R  D    L  A   G
Sbjct: 315 TAAQMGNE-----AVQQILSESTP--MRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.6 bits (161), Expect = 7e-12
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 65  NVAKTLIELGANINAYRPGGRGGTPLHHAAKRG-LEPTVRLLLSCGANALVRNDDCHTAL 123
             A  L +  A       G      L  AA+ G  E  + LL     N    +    T L
Sbjct: 5   KSALDLADPSAKAVL--TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62

Query: 124 GVARIKGHINVVRAIESH 141
            +A     + +V+ +  H
Sbjct: 63  HLAAGYNRVRIVQLLLQH 80

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 6e-11
 Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 15/112 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V+    L S GA    ++  GK+ + +A     L        +              G
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT-PELRERLTYEFK--------------G 179

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
             L  AA+      V+  L+       +     TAL  A    H    +  E
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.4 bits (218), Expect = 1e-20
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD++ + +L     ++   +  G+T L V  + +    +A+ L+  GAN +     G   
Sbjct: 16  GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN--PEIARRLLLRGANPDLKDRTGF-- 71

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +H AA+ G   T++ LL   A+  + +++ +  L +A  +GH+ VV  +  H
Sbjct: 72  AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.4 bits (218), Expect = 1e-20
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+ +  R L  +GA+ +  D+ G   +  A    G ++  +TL+E  A++N     G   
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIEDNEGN-- 104

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
            PLH AAK G    V  L+   A       RN    TA  +AR+ G   VV  ++++
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGH--RNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           M +     L  A    G +    +L++   N+NA    G G T L        E   R L
Sbjct: 1   MAEPWGNELASAAA-RGDLEQLTSLLQNNVNVNA--QNGFGRTALQVMKLGNPE-IARRL 56

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           L  GAN  +++      +  A   G ++ ++ +   
Sbjct: 57  LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF 92

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.5 bits (161), Expect = 6e-13
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
           G +D ++ L    A +   D EG  PL +A  + G + V + L++  A N+       +G
Sbjct: 81  GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGH--RNHKG 137

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGA 110
            T    A   G    V L+ + GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G       L   G S +   K  +TPL +A    G  N+ + L++ GA++NA        
Sbjct: 45  GHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKM-- 101

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           T LH A +   +  V LL+  GA+   ++  C TA  ++   G+ ++  
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA     D  G +PL +A    G  +  + L+  G + +A     R  
Sbjct: 13  GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQ-YGHFSTTEVLLRAGVSRDARTKVDR-- 68

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G    V +LL  GA+   ++    TAL  A    H  VV  +  +
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
           +    L+ A   +G  +  + L+  GA          G +PLH AA+ G   T  +LL  
Sbjct: 1   DLGKKLLEAAR-AGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 109 GANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G +   R     T L +A  +GH N+V  +  H
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 62.8 bits (154), Expect = 5e-12
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L   GA +   D    T L  A        V + LI+ GA+++      +  
Sbjct: 78  GHANIVEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELLIKYGADVHTQSKFCK-- 134

Query: 88  TPLHHAAKRGLEPTVRLL 105
           T    +   G E    +L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.9 bits (214), Expect = 2e-20
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA +   D+ G TPL +A    G + + + L++ GA++NA    G   
Sbjct: 25  GQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAVDAIGF-- 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G      +LL  GA+   ++    TA  ++   G+ ++   ++  
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.6 bits (138), Expect = 4e-10
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           +      G+++            L  AA+ G +  VR+L++ GA+   +++   T L +A
Sbjct: 4   SHHHHHHGSDLG---------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA 54

Query: 127 RIKGHINVVRAIESH 141
              GH+ +V  +  +
Sbjct: 55  TAHGHLEIVEVLLKN 69

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 84.9 bits (211), Expect = 3e-20
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L  +G+ +     +    L+ A    G  +  + L+  GA++ A    G   
Sbjct: 5   HHHHHSSGLVPRGSHM---GSDLGKKLLEAARA-GQDDEVRILMANGADVAAKDKNGS-- 58

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
           TPLH AA+ G    V+LLL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.0 bits (180), Expect = 5e-16
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
            +  L+  G+++ +       G  L  AA+ G +  VR+L++ GA+   ++ +  T L +
Sbjct: 9   HSSGLVPRGSHMGS-----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHL 63

Query: 126 ARIKGHINVVRAIESH 141
           A   GH+ VV+ +   
Sbjct: 64  AARNGHLEVVKLLLEA 79

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +          L+  G++      D    L  A   G  + VR + ++
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMAN 46

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.9 bits (219), Expect = 4e-20
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L +  A +  +D  GK+ L  A      ++ A  L++ GAN +      R  
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAA-VNNVDAAVVLLKNGANKDM--QNNREE 159

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA+ G   T ++LL   AN  + +        +A+ + H ++VR ++ +
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 84.8 bits (211), Expect = 6e-19
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 27  AGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
                 I     QGASL    D+ G+T L +A       + AK L+E  A+ N       
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAAR-YSRSDAAKRLLEASADANI--QDNM 57

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G TPLH A     +   ++L+   A   +A  R  D  T L +A       ++  + + 
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINS 114

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 82.8 bits (206), Expect = 2e-18
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
              DA + L    A     D  G+TPL  A   +    V + LI   A +++A    G  
Sbjct: 36  SRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGT- 93

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPL  AA+  +E  +  L++  A+    +D   +AL  A    +++    +  +
Sbjct: 94  -TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.1 bits (186), Expect = 1e-15
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +VDA   L   GA+ +  +   +TPL +A  + G    AK L++  AN +         
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDI--TDHMDR 192

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
            P   A +R     VRLL        VR+   H
Sbjct: 193 LPRDIAQERMHHDIVRLLDEYNL---VRSPQLH 222

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 88.4 bits (220), Expect = 4e-20
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 2/111 (1%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPG 83
           V AG  + ++ L   G ++   D +G TPL  A      + V K L+E GA + A     
Sbjct: 78  VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS-CNNVQVCKFLVESGAAVFAMTYSD 136

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
            +         + G     + L        + N     AL     +    +
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.7 bits (213), Expect = 3e-19
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+ D ++ +  +       + EG T L  A    G   + K L++ G N+NA    G   
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADSDGW-- 104

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA--NALVRND-DCHTALGVARIKGHINVVRAIESH 141
           TPLH AA        + L+  GA   A+  +D            +G+    + +   
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           +  G+  L      + L       I  G  +            L  ++  G    V+ ++
Sbjct: 2   EITGQVSLPPGKR-TNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRII 57

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
               +  + ND+  TAL  A   GH  +V+
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVK 87

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L                + G  +++ +      L+ + +  G  ++ + +I    + +  
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSL-EGEFDLVQRIIYEVDDPSL- 65

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
            P   G T LH+A   G    V+ L+  G N    + D  T L  A    ++ V + +  
Sbjct: 66  -PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 141 H 141
            
Sbjct: 125 S 125

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 85.9 bits (214), Expect = 6e-20
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         
Sbjct: 53  NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNV--ADLWKF 109

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA +G     +LLL  GA+   +N D +T L + +  G  ++   +   
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 76.7 bits (190), Expect = 9e-17
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           GDV+ ++ L + Q  +   ++    TPL  A      ++V + L++ GA+++A   GG  
Sbjct: 19  GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAG-YNRVSVVEYLLQHGADVHAKDKGGL- 76

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             PLH+A   G      LL+  GA   V +    T L  A  KG   + + +  H
Sbjct: 77  -VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.1 bits (186), Expect = 4e-16
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           + E    L+ A   +G +   K L  +   N       GR  TPLH AA       V  L
Sbjct: 5   NSEADRQLLEAAK-AGDVETVKKLCTVQSVNCRD--IEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVV 135
           L  GA+   ++      L  A   GH  V 
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVA 91

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 64.7 bits (159), Expect = 2e-12
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
             GA +   D    TPL  A    G   + K L++ GA+         G TPL       
Sbjct: 96  KHGAVVNVADLWKFTPLHEAAA-KGKYEICKLLLQHGADPTK--KNRDGNTPLDLVKDGD 152

Query: 98  LEPTVRLLLSCGA 110
            +    LL    A
Sbjct: 153 TD-IQDLLRGDAA 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 86.3 bits (214), Expect = 7e-20
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD-----SGLINVAKTLIELGANINAY 80
                     L ++GA ++   KEG T             +G   + K  +E GA+I A 
Sbjct: 51  DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA- 109

Query: 81  RPGGRGGTPLHHAAKRG------LEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHIN 133
                    +             + P  +L+    G   L+++    TAL   +      
Sbjct: 110 -LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

Query: 134 VVRAIESH 141
            ++ +E +
Sbjct: 169 ALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-----DSGLINVAKTLI-ELGANINA 79
           I G  +  +    +GA +  + K  K  +          ++ +I + K +  + G  +  
Sbjct: 90  ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
               G   T L    +      ++++        ++ + 
Sbjct: 150 KDKWGL--TALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 13/97 (13%), Positives = 23/97 (23%), Gaps = 10/97 (10%)

Query: 48  KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA-----KRGLEPTV 102
                 +  A M  G       L E G             + + +               
Sbjct: 4   MSEYRTVSAAAM-LGTYEDFLELFEKGYEDKESV----LKSNILYDVLRNNNDEARYKIS 58

Query: 103 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
             L++ GA+   R  +  T        G  ++    E
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.9 bits (224), Expect = 8e-20
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-----GANINAYRPGG 84
           ++ I+ L   GAS    DK  +TPL+ A  +         +++         ++      
Sbjct: 153 LEMIKILVQLGASPTAKDKADETPLMRAM-EFRNREALDLMMDTVPSKSSLRLDY--ANK 209

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +G + LH A     E      +  G +  + +++    L ++     + + + +   
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 87.2 bits (217), Expect = 7e-19
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 11/110 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L   G S    ++ G T L +AC   G ++ AK L  +G   + +     G 
Sbjct: 31  GQTDEVRRLIETGVSPTIQNRFGCTALHLACK-FGCVDTAKYLASVGEVHSLWH----GQ 85

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 137
            P+H A        V  L+                  +        V   
Sbjct: 86  KPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEI 129

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.9 bits (211), Expect = 3e-18
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D E    + VA    G  +  + LIE G +         G T LH A K G   T + L 
Sbjct: 17  DDENMEKIHVAAR-KGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVDTAKYLA 73

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           S G             + +A +    ++V A+   
Sbjct: 74  SVGEV--HSLWHGQKPIHLAVMANKTDLVVALVEG 106

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 12/125 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D        G  +   D E   PL ++   + ++ + K L++              G
Sbjct: 222 NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV-RAAMVLLTKELLQKTDVFLIQACPYHNG 280

Query: 88  -----------TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                        +  AA    +  ++LL       +   +         + K    V R
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKR 340

Query: 137 AIESH 141
              + 
Sbjct: 341 MKLAP 345

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 47  DKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
             +G+T L          + + K L++LGA+  A        TPL  A +      + L+
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA--KDKADETPLMRAMEFRNREALDLM 192

Query: 106 LSC-----GANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +              N   ++ L  A +    +V       
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 3/99 (3%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
                      G ++          +  A  D     V + L E    +        G  
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAA-DPSKQEVLQLLQEKLDEVVR--SLNTGAG 325

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
                 K+      R+ L+  A    R+     +  V++
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129
                 N             +H AA++G    VR L+  G +  ++N    TAL +A   
Sbjct: 6   TDFPKLNRIK--SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 130 GHINVVR 136
           G ++  +
Sbjct: 64  GCVDTAK 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.9 bits (219), Expect = 1e-19
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
           V   DVD ++ L   GA++ + ++E G TPL  A       ++ + L+  GA+       
Sbjct: 13  VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVELLLRHGADPVL--RK 69

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             G TP   AA  G    ++L LS GA+    +    TA   A + G +  ++
Sbjct: 70  KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D +  L   GA      K G TP ++A + +G + + K  +  GA++N     G   
Sbjct: 50  SREDIVELLLRHGADPVLRKKNGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGF-- 106

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN----------ALVRNDDCHTALGVARIKGHINVVR 136
           T    AA  G    ++ L   GAN                   TAL  A  KGH+ V++
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             E    LI A   +  +++ + L+E GAN+N  +    G TPLH+A +   E  V LLL
Sbjct: 2   AVEDNHLLIKAVQ-NEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
             GA+ ++R  +  T   +A I G + +++
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.9 bits (206), Expect = 6e-18
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACM---DSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           L   GA +   D  G+  LI A +   DS +  +   L++ GA++N    G RG TPL  
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--RGERGKTPLIL 225

Query: 93  AAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A ++     V+ LL          + D  TAL +A       +   +   
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)

Query: 28  GDVDAIRALRSQGA----------SLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGAN 76
           G V A++ L  +GA            E + K G T L+ A    G + V K L+ E+GA+
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGAD 174

Query: 77  INAYRPGGRGGTPLHHAAKRG----LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           +NA      G   L HA        +E    LLL  GA+  VR +   T L +A  K H+
Sbjct: 175 VNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232

Query: 133 NVVRA-IESH 141
            +V+  +E  
Sbjct: 233 GLVQRLLEQE 242

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 5e-14
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE-LGANINAYRPGGRGGTPLH 91
              L   GA +    + GKTPLI+A  +   + + + L+E     IN       G T L 
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAV-EKKHLGLVQRLLEQEHIEIND--TDSDGKTALL 258

Query: 92  HAAKRGLEPTVRLLLSCGAN 111
            A +  L+    LL   GA+
Sbjct: 259 LAVELKLKKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 8/68 (11%)

Query: 75  ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHIN 133
           A +            L  A +      V+ LL  GAN   + ++   T L  A      +
Sbjct: 1   AAVE-------DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED 53

Query: 134 VVRAIESH 141
           +V  +  H
Sbjct: 54  IVELLLRH 61

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.3 bits (111), Expect = 9e-06
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 28  GDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
             +  ++ L  Q    +   D +GKT L++A     L  +A+ L + GA+ + 
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDC 281

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.5 bits (215), Expect = 2e-19
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ ++    +       ++EG T L  A       ++   LI  GAN+N+    G   
Sbjct: 32  GELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSPDSHGW-- 88

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRND-DCHTALGVARI--KGHINVVRAIESH 141
           TPLH AA          L+  GA        D  TA        +G+ +    +   
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVA-CMDSGLINVAKTLIELGANINAYRPGGR 85
            D     AL   GA++      +G T          G  + A  L ++  ++     G  
Sbjct: 98  NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
               L   +    +  +          L R+    T    A + G    V
Sbjct: 158 --YALWDYSAEFGD-ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 33  IRALRSQGASLEWMDKE---GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           +R++  +  S     +        L+ A + +G + V +  ++   + +   P   G T 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAAL-TGELEVVQQAVKEMNDPSQ--PNEEGITA 57

Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           LH+A        V  L++ GAN    +    T L  A       +  A+  H
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  +   +   +  L + GA++   D  G TPL  A        +   L++ GA I A 
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS-CNDTVICMALVQHGAAIFA- 115

Query: 81  RPGGRGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
                G T        + G       L     +  + N     AL     +    +
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G       K+G TPL  A   +G     K L+  GA++NA    G   TPLH AAK G  
Sbjct: 1   GHMWG--SKDGNTPLHNAA-KNGHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHA 55

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             V+LLL+ GA+   R+ D +T   +A+  GH  +V+
Sbjct: 56  EIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK 92

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.0 bits (204), Expect = 3e-19
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA +    K+G TPL +A  + G   + K L+  GA++NA    G   
Sbjct: 20  GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNARSKDGN-- 76

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           TP H A K G    V+LL + GA+   R+       
Sbjct: 77  TPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L ++GA +    K+G TP  +A   +G   + K L   GA++NA   G    
Sbjct: 53  GHAEIVKLLLAKGADVNARSKDGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSS-- 109

Query: 88  TPLHH 92
              HH
Sbjct: 110 HHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.4 bits (140), Expect = 1e-10
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G    +      G TPLH+AAK G    V+ LLS GA+   R+ D +T L +A   GH  
Sbjct: 1   GHMWGSKD----GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56

Query: 134 VVRAIESH 141
           +V+ + + 
Sbjct: 57  IVKLLLAK 64

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 85.2 bits (212), Expect = 4e-19
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG-TPLHHAA 94
           L S+ + L   D++G+ PL  +        +   L+    N+N        G TP H A 
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVS-FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80

Query: 95  KRGLEPTVRLLLS--CGANALVRNDDCHTALGVARIKGHINVVR 136
             G    V+ L       +     +   T L +A  K    V +
Sbjct: 81  SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.7 bits (208), Expect = 1e-18
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 28  GDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIE--LGANINAYRP 82
              +    L S+  ++   ++ D  G TP  +AC   G + V K+L +  L  ++N    
Sbjct: 47  QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNK--I 103

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +G T LH A  +      + L+  GA+  +++      L  A   G + ++  +   
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.7 bits (203), Expect = 7e-18
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 37  RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96
           R     L  +  +G T L +A        V++ LIE GA++       +   PLH AA  
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVG-KKWFEVSQFLIENGASVRIKDKFNQ--IPLHRAASV 150

Query: 97  GLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVRA-IESH 141
           G    + LL   G +A+  ++    T L  A  +GH +     +E +
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.0 bits (196), Expect = 6e-17
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
              PL  ACM++    V + L    + +        G  PLH +           LLS  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 110 AN---ALVRNDDCHTALGVARIKGHINVVRAIESH 141
            N       +D   T   +A   G++ VV+++   
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.6 bits (195), Expect = 8e-17
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRG 86
              +  + L   GAS+   DK  + PL  A    G + + + L  LG + +N     G  
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGW- 175

Query: 87  GTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
            TPL HA   G      LL+   GA   + ++    A  VA    +  V +   +++
Sbjct: 176 -TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNV 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 85.3 bits (211), Expect = 5e-19
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           +  +     D++ +T L  AC  +G   + + L++LG  +N       G +PLH AA  G
Sbjct: 28  ADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVND--KDDAGWSPLHIAASAG 84

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +  V+ LL  GA+    N +  T L  A  K    +   +   
Sbjct: 85  XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 73.4 bits (180), Expect = 5e-15
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA    G   
Sbjct: 51  GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS-AGXDEIVKALLVKGAHVNAVNQNGC-- 107

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V  +  +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++AL  +GA +  +++ G TPL  A        +A  L+E GAN +A        
Sbjct: 84  GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDHYDA-- 140

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T +H AA +G    V +LL   A+  +++ + +T L +A  +  +   + + + 
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
                 +A     L  + + ++   +         R  T LH A   G    V  LL  G
Sbjct: 7   NIMICNLAYS-GKLDELKERILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLG 63

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                ++D   + L +A   G   +V+A+   
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              + +   Q+    L+        +    L   GA+ +  D    T +  A    G + 
Sbjct: 95  KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLK 153

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           +   L+   A+ N     G   TPLH A         + L++ GA+  + N +  T L V
Sbjct: 154 MVHILLFYKASTNIQDTEGN--TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

Query: 126 ARIKGHINVVR 136
           A  KG + ++ 
Sbjct: 212 A--KGGLGLIL 220

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.3 bits (133), Expect = 7e-09
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              N   +       +++    G++  +  L    AS    D EG TPL +AC D   + 
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVE 186

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
            AK L+  GA+I       +  TPL  A    L   +   L+ G  
Sbjct: 187 EAKFLVTQGASIYIENKEEK--TPLQVAKGG-LG-LILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              + + Q    +  L+       V+  + L +QGAS+   +KE KTPL VA    G + 
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA---KGGLG 217

Query: 66  VAKTLIELGANIN 78
           +    +  G   +
Sbjct: 218 LILKRLAEGEEAS 230

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 87.3 bits (216), Expect = 7e-19
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           +  +D +  L +    ++ +  E      +A  ++G ++V   L EL             
Sbjct: 105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAA-ENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 87  GTPLHHAAKRG-LEPTVRLLLSCGAN---ALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 AA+ G L   +  L         A+++ ++ +     A  +GH NV+  +   
Sbjct: 164 YHAFRLAAENGHLH-VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 15/119 (12%)

Query: 28  GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           G +  +  L     +        E       A +  G  NV   L++    +        
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY------ 227

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144
                 H  + G +     +            + H A  ++   G  ++V   E    +
Sbjct: 228 ---AEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNPDGVFDLVTKSECLQGF 279

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 12/102 (11%)

Query: 47  DKEGKTPLIVACM--DSGLINVAKTLIEL-----GANINAYRPGGRGGTPLHHAAKRGLE 99
             +G   L       D  L++  + L+ +      A        G     L  A + G +
Sbjct: 275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT--IPGDANELLRLALRLGNQ 332

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               LLLS  +   +   +      +    G +++      H
Sbjct: 333 GACALLLSIPSVLALTKAN---NYYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 11/89 (12%)

Query: 28  GDVDAIRALRS-----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
             +D IR L S       A    +  +    L +A    G       L+ + + +     
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR-LGNQGACALLLSIPSVLAL--- 347

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
                   +     G      + L    +
Sbjct: 348 --TKANNYYINETGGRLDLRAVALEHHHH 374

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.1 bits (199), Expect = 8e-19
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVR 136
           A+   ++ +  T L +A   GH+ VV+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 76.6 bits (190), Expect = 2e-17
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA 110
           TPLH AA+ G    V+LLL  GA
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 54.3 bits (132), Expect = 1e-09
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+ +   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 440 KDDGSSSSCVICWEAPVEGACVP--CGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
               +   CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 3   LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 74.9 bits (184), Expect = 3e-17
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 448 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 498
           C +C + P +G  +    GH+  C  C   +K     CP+C+ +I  VI+++ 
Sbjct: 10  CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 28  GDVDAIRALRSQGA--------SLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANIN 78
             V + + L  +GA          +    +G+T L  A      + + K L+ E G+N +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ-VSNMPIVKYLVGEKGSNKD 307

Query: 79  AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G+  TP+  AA+ G    V  L+  GA+    +   HTA  +A+   H N+V   
Sbjct: 308 KQDEDGK--TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

Query: 139 ESH 141
           +  
Sbjct: 366 DRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.5 bits (202), Expect = 5e-17
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
            +   + GA +  MD +  TPL++A   +    +   L++ GA+   Y    R  + LH 
Sbjct: 149 AKECIAAGADVNAMDCDENTPLMLAV-LARRRRLVAYLMKAGADPTIYNKSER--SALHQ 205

Query: 93  AAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGHINVVRAIE 139
           AA       +  +L+      +    + +  TAL +       + V + +
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-------DSGLINVAKTLIELGANINA 79
           AG       +  +  ++    +  +T L            +  +++ AK  I  GA++NA
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                   TPL  A        V  L+  GA+  + N    +AL  A       ++ 
Sbjct: 162 --MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV 216

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 13/116 (11%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+        +        + E    L      S    + + +     NI          
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS--YAITEPITRESVNIID---PRHNR 126

Query: 88  TPLHHAAKRGLEPTVRLLL--------SCGANALVRNDDCHTALGVARIKGHINVV 135
           T LH  A          L+        + GA+    + D +T L +A +     +V
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           +  +G++ +  D++GKTP+++A    G I V   LI+ GA++ A        T    A  
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQ-EGRIEVVMYLIQQGASVEA--VDATDHTARQLAQA 355

Query: 96  RGLEPTVRLLLSCGAN 111
                 V +   C   
Sbjct: 356 NNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 11/100 (11%), Positives = 17/100 (17%), Gaps = 5/100 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                 P       +G   +               P       LH  A          + 
Sbjct: 58  QHYSLYPNPQGYG-NGNDFLGDFNHTNLQIPTE--PEPESPIKLHTEAAGSYA-ITEPIT 113

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
               N ++      T L              +  H    C
Sbjct: 114 RESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 9/95 (9%), Positives = 17/95 (17%), Gaps = 13/95 (13%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
               +  L+ A  D            +    N  +       P       G +       
Sbjct: 34  ITSSQHSLLEASYD----------GYIKRQRNELQHYSL--YPNPQGYGNGNDFLGDFNH 81

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +          +    L      G   +   I   
Sbjct: 82  TNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRE 115

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
           G ++ +  L  QGAS+E +D    T   +A   +   N+           
Sbjct: 324 GRIEVVMYLIQQGASVEAVDATDHTARQLAQ-ANNHHNIVDIFDRCRPER 372

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.4 bits (194), Expect = 9e-17
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 17/127 (13%)

Query: 28  GDVDAIRALRSQGASLEWM-----DKEGKTPLIVACMDSGLINVAKTLIELGANINA--- 79
            +++A   L      L +        EG+T L +A + +  +N+ + L+  GA+++A   
Sbjct: 48  DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI-NQNVNLVRALLARGASVSARAT 106

Query: 80  --------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
                   +     G  PL  AA  G E  VRLL+  GA+   ++   +T L +  ++ +
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166

Query: 132 INVVRAI 138
                 +
Sbjct: 167 KTFACQM 173

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 17/122 (13%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---GGRGGTPLHH 92
           L+ +G  +      G+T L +A +    +  A  L+E    +           G T LH 
Sbjct: 23  LKFEGCEVHQRGAMGETALHIAAL-YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCH-------------TALGVARIKGHINVVRAIE 139
           A        VR LL+ GA+   R                    L  A   G   +VR + 
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 140 SH 141
            H
Sbjct: 142 EH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
            ++PL++A  ++ +  ++K L   G  ++    G  G T LH AA         +L+   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQ--RGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 110 ANAL-----VRNDDCHTALGVARIKGHINVVRAIESH 141
              +         +  TAL +A I  ++N+VRA+ + 
Sbjct: 61  PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 69.6 bits (171), Expect = 9e-14
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 26/140 (18%)

Query: 25  VIAGDVDAIRALRSQGA-------------SLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           VI  +V+ +RAL ++GA                 +   G+ PL  A    G   + + LI
Sbjct: 83  VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLI 141

Query: 72  ELGANINAYRPGGRGGTPLHHAAKRGLEPTVR----LLLSCGAN------ALVRNDDCHT 121
           E GA+I A      G T LH    +  +        LLLS           LV N+   T
Sbjct: 142 EHGADIRA--QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT 199

Query: 122 ALGVARIKGHINVVRAIESH 141
              +A ++G+I + + +   
Sbjct: 200 PFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA---- 79
           G  + +R L   GA +   D  G T L +  +       A  +  L        +     
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILIL-QPNKTFACQMYNLLLSYDGGDHLKSLE 190

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
             P  +G TP   A   G     + L+    +
Sbjct: 191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 71.3 bits (175), Expect = 7e-16
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
           C++C E  +     PCGH   C SC ++++     CPVCR+++  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVY 66

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 26/136 (19%), Positives = 40/136 (29%), Gaps = 27/136 (19%)

Query: 28  GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76
           G  D I  L       + +             +G+T L +A      + +   L+E GA+
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE-RRNMTLVTLLVENGAD 126

Query: 77  INA------------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHT 121
           + A                  G  PL  AA       V+ LL      A+   R+   +T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 122 ALGVARIKGHINVVRA 137
            L          V   
Sbjct: 187 VLHALVEVADNTVDNT 202

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.7 bits (176), Expect = 4e-14
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 26/138 (18%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMD--SGLINVAKTLIELGANINAYR 81
            +   +  ++  + +    E+ D E GKT L+ A ++  +G  +    L+++    ++ +
Sbjct: 28  ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87

Query: 82  PG---------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC------------- 119
                       +G T LH A +R     V LL+  GA+     +               
Sbjct: 88  QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF 147

Query: 120 -HTALGVARIKGHINVVR 136
               L +A     + +V+
Sbjct: 148 GELPLSLAACTNQLAIVK 165

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 21/119 (17%)

Query: 38  SQGASLEWMDKEGKTPLIVACMD------SGLINVAKTLIELGANINAYRPGGRGGTPLH 91
           S  A  +      +  +  A           L+   +   +   +    +    G T L 
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEF-KDPETGKTCLL 59

Query: 92  HA---AKRGLEPTVRLLLSCGA---------NALVRNDDC--HTALGVARIKGHINVVR 136
            A      G   T+ LLL             NA   +      TAL +A  + ++ +V 
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 28  GDVDAIRALRSQGASLEWMDKE--------------GKTPLIVACMDSGLINVAKTLIEL 73
            ++  +  L   GA ++                   G+ PL +A   +  + + K L++ 
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQN 170

Query: 74  G---ANINAYRPGGRGGTPLHHAAKRG----------------LEPTVRLLLSCGANALV 114
               A+I+A      G T LH   +                  +      L        +
Sbjct: 171 SWQPADISA--RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI 228

Query: 115 RNDDCHTALGVARIKGHINVVRAI 138
            N    T L +A   G I V+  I
Sbjct: 229 TNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 27/124 (21%)

Query: 28  GDVDAIRALRSQG---ASLEWMDKEGKTPLIVAC---------------MDSGLINVAKT 69
             +  ++ L       A +   D  G T L                   M + ++ +   
Sbjct: 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129
           L              +G TPL  AA  G    +  +L    +              A   
Sbjct: 219 LHPTLKLEEI--TNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHH 269

Query: 130 GHIN 133
            H +
Sbjct: 270 HHHH 273

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.7 bits (181), Expect = 6e-15
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 31/141 (21%)

Query: 28  GDVDAIRALRSQGASLE-------------WMDKEGKTPLIVACMDSGLINVAKTLIELG 74
             +  ++ L   GA +                   G+ PL +A   +   +V   L+E  
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENP 159

Query: 75  ---ANINA--------------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND 117
              A++ A                      + L      GL      L        + N 
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219

Query: 118 DCHTALGVARIKGHINVVRAI 138
              T L +A  +G I + R I
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 23/155 (14%), Positives = 38/155 (24%), Gaps = 42/155 (27%)

Query: 28  GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76
           G    I  L                       +G + L +A      +   K L+E GA+
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE-KRSLQCVKLLVENGAD 115

Query: 77  INA-----------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---------------- 109
           ++                  G  PL  AA       V  LL                   
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175

Query: 110 ---ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 +  N   ++AL +    G + +   +   
Sbjct: 176 LHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 32/150 (21%)

Query: 19  ELLYQWVIAGDVDAIRAL----RSQGASLEW----MDKEGKTPLIVACMDS--GLINVAK 68
           + L+  V  G  + +  L    R     L          GKT L+ A ++   G+     
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 69  TLIELGANINAYRPGG---------RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
            L+++  +    +P           +G + LH A ++     V+LL+  GA+  +R    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 120 -------------HTALGVARIKGHINVVR 136
                           L +A      +VV 
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
              +   +    + L++   D GL+ +   L              +G TPL  AAK G  
Sbjct: 178 ALVMIADNSPENSALVIHMYD-GLLQMGARLCPTVQLEEI--SNHQGLTPLKLAAKEGKI 234

Query: 100 PTVRLLLSCGAN 111
              R +L    +
Sbjct: 235 EIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +     L       E  + +G TPL +A    G I + + +++   +           
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPLKLAA-KEGKIEIFRHILQREFSGA--------- 248

Query: 88  TPLHHAA 94
              HH  
Sbjct: 249 AAHHHHH 255

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
           C IC +  +    VPCGH+  C  C   +      CP+C T I    +++
Sbjct: 28  CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIF 73

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 435 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 494
           S+     + +S  CV+C    V    +PC H   C  C+   +     CP+CR  + +  
Sbjct: 5   SSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESF 60

Query: 495 RLY 497
            L 
Sbjct: 61  ALS 63

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 1/138 (0%)

Query: 2   GQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS 61
                 +N ++Q+   +  L + +     +   +L +  ++                 DS
Sbjct: 48  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107

Query: 62  GLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
            L  V         N+N       G TPLH          V+ L+  G+N L  ++   +
Sbjct: 108 LLQEVNDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166

Query: 122 ALGVARIKGHINVVRAIE 139
            L  A    +       E
Sbjct: 167 CLVKAVKSVNNYDSGTFE 184

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.5 bits (128), Expect = 7e-08
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTL---IELGANINAYRPGGRGGTPLHH 92
           +  +           K             ++ + L     +   +NA      G T L+ 
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA--QDSNGDTCLNI 289

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           AA+ G    V  LL  GA+  + N      +
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           +         L   D  G T L +A    G I++   L++ GA+         G  P+  
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDYGADPFI--ANKSGLRPVDF 322

Query: 93  AA 94
            A
Sbjct: 323 GA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 17/116 (14%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSG-----------LINVAKTLIELGANINAYRPGG 84
           L      L   D   +T L    + SG           L  +   +++          G 
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS--GT 244

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGAN--ALV--RNDDCHTALGVARIKGHINVVR 136
                  +      + ++   L        ++  ++ +  T L +A   G+I++V 
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.2 bits (161), Expect = 3e-12
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 10/144 (6%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK------EGKTPLIVACM-- 59
             +H    +K   L + V   D+  +    + G  L             +T L +A    
Sbjct: 121 RKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV 180

Query: 60  DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
           D   +++   L++   N++     G   T LH+         ++LLL   A+  + N+  
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTGKGS--TALHYCCLTDNAECLKLLLRGKASIEIANESG 238

Query: 120 HTALGVARIKGHINVVRAIESHIC 143
            T L +A+   H +    +   + 
Sbjct: 239 ETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 2   GQSLNSMNQHQQRQSKDE-LLYQWVIAGD---VDAIRALRSQGASLEWMDKEGKTPLIVA 57
           G  L            DE  L+  V + D   +  +  L     +L+    +G T L   
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212

Query: 58  CMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           C+ +      K L+   A+I      G   TPL  A +   E    LL    +   
Sbjct: 213 CL-TDNAECLKLLLRGKASIEIANESGE--TPLDIAKRLKHEHCEELLTQALSGRF 265

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 33/156 (21%)

Query: 19  ELLYQWVIAGDVDAIRA----LRSQGASLEWMDKE----GKTPLIVACMDS--GLINVAK 68
            +L+  V  G  D +      L +    L   +      GKT L  A ++   G  +   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 69  TLIELGANINAYRPG---------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
            L+++       R            RG T LH A +R  +  V LL+  GA+   +    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 120 --------------HTALGVARIKGHINVVRAIESH 141
                            L +A      ++V  +  +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 41  ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------------YRPGGRGGT 88
           +    +   G+T L +A       +  + L+E GA+++A                  G  
Sbjct: 84  SPFRDVYYRGQTALHIAIE-RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142

Query: 89  PLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKGH 131
           PL  AA       V  L   G   A+   ++   +T L        
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 16/100 (16%)

Query: 28  GDVDAIRALRSQG---ASLEWMDKEGKTPLIVACM--------DSGLINVAKTLIELGAN 76
                +  L   G   A L   D  G T L                +  +   L+   A 
Sbjct: 151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210

Query: 77  INAYRPGGR-----GGTPLHHAAKRGLEPTVRLLLSCGAN 111
           +             G +PL  AAK G     + ++     
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 36/147 (24%)

Query: 28  GDVDAIRALRSQGA--------------SLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
                +  L  +GA                      G+ PL +A   +   ++   L E 
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC-TNQPHIVHYLTEN 162

Query: 74  G---ANINAYRPGGRGGTPLHHAA---------KRGLEPTVRLLLSCGAN-------ALV 114
           G   A++       RG T LH             + +     LLL   A          +
Sbjct: 163 GHKQADLRR--QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220

Query: 115 RNDDCHTALGVARIKGHINVVRAIESH 141
            N+D  + L +A   G I + + I   
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           + +G +PL++A   +G I + + +I       A           HH
Sbjct: 222 NNDGLSPLMMAAK-TGKIGIFQHIIRREIADAAAH------HHHHH 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.1 bits (153), Expect = 3e-11
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE------GKTPLIVACM--DSGLINVAKTLIELGAN 76
           +   D+ ++    + G                +  L +A    +   + +   +I+ G +
Sbjct: 159 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 218

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           ++A    G   T LH+AA       ++LLL   A     N+   TAL +AR K H    
Sbjct: 219 LDAKAADGN--TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G  L+    +G T L  A +     +  K L++  A +      G   T L  A K+  +
Sbjct: 216 GGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVNEAGE--TALDIARKKHHK 272

Query: 100 PTVRLLLSCGANAL 113
               LL    A   
Sbjct: 273 ECEELLEQAQAGTF 286

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 62.7 bits (150), Expect = 8e-11
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
           C +C +  V    +PCGH+  C  C   ++     CP+CR  I   +R +
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTF 343

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 15  QSKDELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAK 68
             + + L+  +   D+ ++    + G                +  L +A   +   ++  
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 189

Query: 69  T--LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
              +I+ G +++A    G   T LH+AA       ++LLL   A     N+   TAL +A
Sbjct: 190 VDFIIQNGGHLDAKAADGN--TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

Query: 127 RIKGHINVVRAIE 139
           R K H      +E
Sbjct: 248 RKKHHKECEELLE 260

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM--DKEGKTPLIVACMDSGL 63
                         L         +  +    + GA + W+   ++  TPLI A   + L
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           +     L++ GAN+N       G  PLHHA   G      L L  GA+   R+ +    L
Sbjct: 249 LACE-FLLQNGANVNQ--ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

Query: 124 GVARIKGHINVVR 136
            +A    + ++V 
Sbjct: 306 TIAMETANADIVT 318

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 21/100 (21%), Positives = 30/100 (30%)

Query: 37  RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96
           + +  S +         L  A      +      +  GA++N    G    TPL  A   
Sbjct: 186 KPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA 245

Query: 97  GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                   LL  GAN    +      L  A I GH  +  
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 410 EGPIRYPSVENSVADL----------HLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGA 459
           EG   +P   N   DL          H+ V ++       +   +   C IC E   +  
Sbjct: 288 EGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYC-EMGSTFQLCKICAENDKDVK 346

Query: 460 CVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKI--NQVIRLY 497
             PCGH+  C SCL+   +++   CP CR +I   + I + 
Sbjct: 347 IEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 435 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 491
           S+ N     +   C IC +  V    +PC H+  C  C+         C +CR +I 
Sbjct: 5   SSGNTAPSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIP 60

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 443 GSSSSCVICWEAPVEGACV-------PCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQV 493
           G+  SC IC +   E            CGH+  C  CL +       CP CR KI   + 
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRY 59

Query: 494 IRLY 497
             +Y
Sbjct: 60  HPIY 63

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 435 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 493
           S+   +++     C IC +A        C H   C SC  E       C +C      +
Sbjct: 5   SSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI 62

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 436 ASNVKDDGSSSSCVICWE-------APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 488
            +       + SC IC +                CGH+  C  CL +       CP CR 
Sbjct: 1   GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRK 59

Query: 489 KI--NQVIRLY 497
           KI   +   +Y
Sbjct: 60  KINHKRYHPIY 70

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 447 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 499
            C+IC E  +E   + C H   C  C++E   +K +CP+CR  I        +
Sbjct: 66  QCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKTYSLVL 117

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 444 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 495
            +  C IC E P   +   PC H   C  C++    +   CP+C+  +  V+ 
Sbjct: 4   VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 439 VKDDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSE-IKAKKGDCPVCRTKINQ 492
           V+       C IC E   +    P C  +  C SC+   +  ++  CP CR  +  
Sbjct: 16  VESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 435 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQV 493
              +     S   C IC E  VE   +PC H   C  C      K    CP CR +++  
Sbjct: 5   LPKDAIPSLSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSW 63

Query: 494 IRLYT 498
            R +T
Sbjct: 64  TRYHT 68

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 492
           C  C           CGH   C SC++ + +     C  C+  I +
Sbjct: 18  CEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 435 SASNVKDDGSSSSCVICWEAPVEGACV-------PCGHMAGCMSCLSEIKAKKGDCPVCR 487
           S + ++  G+ S C IC +   E            CGH+  C  CL +       CP CR
Sbjct: 6   SGTGLRPSGTVS-CPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCR 63

Query: 488 TKINQ 492
            KIN 
Sbjct: 64  KKINH 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 38/264 (14%), Positives = 68/264 (25%), Gaps = 85/264 (32%)

Query: 45  WMDKEGKTPLIVACMD----SGLINV----AKTLI--ELGANINAYRPGGRGGTPLHHAA 94
              K  +  L+V  +     +   N      K L+        +           L H +
Sbjct: 238 LKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 95  KRGLEP--TVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRA-IESHICYFCGW 148
              L P     LLL        R  D    L    +  +   ++++   I   +  +  W
Sbjct: 296 M-TLTPDEVKSLLLKY---LDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 149 LREFYGP------SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE-LVIYPSLQDVQ- 200
                        S L  L P    +                   F+ L ++P       
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRK------------------MFDRLSVFP--PSAHI 387

Query: 201 PRAVIA-LWKAKIDE------PKFH-------QPDPS-LTIYDQATKIR----------- 234
           P  +++ +W   I         K H       QP  S ++I     +++           
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 235 -----YKFASANEGDKHQLQWLDN 253
                Y      + D     +LD 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQ 471

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 447 SCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKINQ 492
            C+ C E         C H   C  CL    +A+   CP CR  + +
Sbjct: 54  QCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 32/128 (25%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 369 KQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLP 428
                   L  P      S    +S SA          +  +  IR       + D  L 
Sbjct: 6   HHHHHSSGL-VPRGSPSASKVYKASDSAEAIEAFQLTPQQ-QHLIREDCQNQKLWDEVLS 63

Query: 429 VLEDGVSASNVKDDGSSSSCVICWE---APVEGACVPCGHMAGCMSCLSE-IKAKKGDCP 484
            L +G +   +K    S  CV C E    PV      C H   C  CL    KA+   CP
Sbjct: 64  HLVEGPNF--LKKLEQSFMCVCCQELVYQPVT---TECFHNV-CKDCLQRSFKAQVFSCP 117

Query: 485 VCRTKINQ 492
            CR  + Q
Sbjct: 118 ACRHDLGQ 125

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 447 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 491
            C IC  A  E    PCGH   C +C+ +     G  CPV    + 
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILL 64

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 436 ASNVKDDGSSSSCVICWE----APVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKI 490
           + +         C +C E      +      CG+   C  C   I+    G CP CR   
Sbjct: 2   SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPY 60

Query: 491 NQ 492
            +
Sbjct: 61  PE 62

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 435 SASNVKDDGSSSSCVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 491
           S+ N+ +      C IC              C H   C SC+         CP C   ++
Sbjct: 5   SSGNLSELTPYILCSICKGYLIDAT--TITECLH-TFCKSCIVRHFYYSNRCPKCNIVVH 61

Query: 492 Q 492
           Q
Sbjct: 62  Q 62

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 447 SCVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 492
            C IC+E     +      C H   C  C+ +  + K  CP C   + +
Sbjct: 24  RCGICFEYFNIAM--IIPQCSH-NYCSLCIRKFLSYKTQCPTCCVTVTE 69

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 435 SASNVKDDGSSSSCVICWEAPVEGACVP----CGHMAGCMSCLSEIKAKKGD---CPVCR 487
           S+ N+        C IC E+  E    P    CGH   C  CL ++ A   +   CP C 
Sbjct: 5   SSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCS 63

Query: 488 --TKINQVIRL 496
             T+I  + +L
Sbjct: 64  KITRITSLTQL 74

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 448 CVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 492
           CV+C            + C H   C +C+         CP+C  ++++
Sbjct: 18  CVLCGGYFIDAT--TIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 447 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 492
            C IC  A  E    PCGH   C +C+ +     G  CPV    + +
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 435 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 490
           S+  VK       C IC +       +PC H + C  C+ +   +  +CP+CR ++
Sbjct: 5   SSGRVKQLTDEEECCICMD-GRADLILPCAH-SFCQKCIDKWSDRHRNCPICRLQM 58

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 435 SASNVKDDGSSSSCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAKKGDCPVCRTKI 490
           S+  VK+      C +C E       +   PC H      CL +    +  CP+C   +
Sbjct: 5   SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPV 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	499
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.41
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.41
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.32
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.17
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.12
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.06
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.03
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.03
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.01
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.97
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.97
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.96
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.95
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.94
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.94
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.94
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.89
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.88
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.87
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.87
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.86
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.86
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.86
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.86
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.86
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.84
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.83
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.82
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.81
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.81
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.8
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.79
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.77
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.73
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.71
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.71
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.71
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.7
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.69
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.67
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.67
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.67
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.65
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.63
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.63
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.62
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.6
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.59
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.58
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.58
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.56
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.55
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.53
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.49
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.44
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.37
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.37
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.26
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.24
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.23
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.19
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.12
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.94
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.91
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.82
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.73
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.43
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.29
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.93
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.71
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.43
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	93.38
3nw0_A	238	Non-structural maintenance of chromosomes element	89.18
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.04

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.3e-36  Score=283.96  Aligned_cols=220  Identities=23%  Similarity=0.242  Sum_probs=205.1

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCC
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~   87 (499)
                      ++.+.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+.. |+.+++++|+++|++++.+  +..|.
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~   78 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKAGALVDPK--DAEGS   78 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCCCCC--CTTSC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh-CCHHHHHHHHhCCCCCCCC--CCCCC
Confidence            57788999999999999999999999999999999999999999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC
Q 010851           88 TPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        88 TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      ||||+|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..+
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~  155 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSG  155 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHC
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCC
Confidence            9999999999999999999999 8999999999999999999999999999999999998  89999999999 999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCCC
Q 010851          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  243 (499)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~~  243 (499)
                      +.+++++|+++|++++..+..+.++++++........+..++..          +.+++.+|+.|+|||++|+.+..
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR----------DSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT----------TCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc----------CCCCCccCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999988887666654432          33478899999999999997543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.4e-36  Score=290.05  Aligned_cols=218  Identities=21%  Similarity=0.180  Sum_probs=167.4

Q ss_pred             cCccccCCCchHHHHHHHHcC-------------CHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHcCCcHHHHHHHHHc
Q 010851            8 MNQHQQRQSKDELLYQWVIAG-------------DVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIEL   73 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g-------------~~~~v~~Ll~~g~~~~~-~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~   73 (499)
                      +++|.+|.+|+||||+|+..|             +.+++++|+++|++++. .|..|+||||+|+.. |+.+++++|+++
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~   79 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY-SRSDAAKRLLEA   79 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHc
Confidence            468899999999999999977             89999999999999865 489999999999998 999999999999


Q ss_pred             CCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccc
Q 010851           74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA-NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF  152 (499)
Q Consensus        74 ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  152 (499)
                      |++++.+  |..|+||||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+..|+.+++++|+++|++++  .+|.
T Consensus        80 g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~  155 (253)
T 1yyh_A           80 SADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDD  155 (253)
T ss_dssp             TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCT
T ss_pred             CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCC
Confidence            9999998  8899999999999999999999999997 899999999999999999999999999999999999  8999


Q ss_pred             cCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCc
Q 010851          153 YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK  232 (499)
Q Consensus       153 ~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~  232 (499)
                      .|+|||| +|+..++.+++++|+++|++++.++..+.++++++...+....+..|+..          +..+++.|..|+
T Consensus       156 ~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----------ga~~~~~d~~g~  224 (253)
T 1yyh_A          156 LGKSALH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH----------FANRDITDHMDR  224 (253)
T ss_dssp             TSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----------TCCTTCCCTTCC
T ss_pred             CCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc----------CCCccccccCCC
Confidence            9999999 99999999999999999999999999999999999988887776665543          234778999999


Q ss_pred             chhHhHhhC
Q 010851          233 IRYKFASAN  241 (499)
Q Consensus       233 tpl~~a~~~  241 (499)
                      ||+++|+.+
T Consensus       225 tpl~~A~~~  233 (253)
T 1yyh_A          225 LPRDIAQER  233 (253)
T ss_dssp             CHHHHHHHT
T ss_pred             CHHHHHHHc
Confidence            999999963

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.7e-36  Score=291.80  Aligned_cols=214  Identities=19%  Similarity=0.132  Sum_probs=186.3

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCC
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~   87 (499)
                      +.+|.+|+||||+|+..|+.++|++|+++|++   ++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~   79 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGH   79 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCC
Confidence            56899999999999999999999999999988   888999999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC-----------------------------------------------CcccCCCCC
Q 010851           88 TPLHHAAKRGLEPTVRLLLSCGAN-----------------------------------------------ALVRNDDCH  120 (499)
Q Consensus        88 TpL~~A~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g~  120 (499)
                      ||||+|+..|+.+++++|+++|++                                               ++.+|..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999998765                                               677889999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcccccccccccc-cCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCcccccc
Q 010851          121 TALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV  199 (499)
Q Consensus       121 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~  199 (499)
                      ||||+|+..|+.++|++|+++|++++  .++. .|+|||| +|+..++.+++++|+++|++++.++..+.++++++....
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~  236 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP  236 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence            99999999999999999999999998  6764 5999999 999999999999999999999999999999999999888


Q ss_pred             ChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          200 QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       200 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      ....+..|+..          +..++..|..|.|||++|..
T Consensus       237 ~~~~v~~Ll~~----------ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          237 NPILARLLRAH----------GAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             CHHHHHHHHHT----------TCCCCCCC------------
T ss_pred             CcHHHHHHHHc----------CCCcCcCCCcccccccccCC
Confidence            87766665543          34488999999999999984

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=7.7e-36  Score=266.84  Aligned_cols=159  Identities=31%  Similarity=0.392  Sum_probs=150.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCC
Q 010851           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (499)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~   98 (499)
                      +.|+.||+.|+.++|++||++|+++|.+|..|+||||+|+.. ++.+++++|+++|++++.+  |..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~-~~~~~~~~ll~~gad~~~~--d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhhh--ccCCCCHHHHHHHcCC
Confidence            579999999999999999999999999999999999999998 9999999999999999998  8899999999999999


Q ss_pred             HHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcC
Q 010851           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (499)
Q Consensus        99 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~g  178 (499)
                      .++|++|+++|++++.+|.+|+||||+|+..|+.++|++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999  99999999999 999999999999999999


Q ss_pred             CCCCC
Q 010851          179 TANPS  183 (499)
Q Consensus       179 a~~~~  183 (499)
                      ++++.
T Consensus       160 A~ie~  164 (169)
T 4gpm_A          160 GWLEH  164 (169)
T ss_dssp             -----
T ss_pred             CCcCC
Confidence            98754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=288.16  Aligned_cols=224  Identities=19%  Similarity=0.159  Sum_probs=201.8

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCC
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~   87 (499)
                      -..+.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+
T Consensus        50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~  126 (285)
T 3d9h_A           50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWH  126 (285)
T ss_dssp             CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSSCC--CTTCC
T ss_pred             CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCC
Confidence            34567899999999999999999999999999999999999999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCC
Q 010851           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (499)
Q Consensus        88 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~  167 (499)
                      ||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~  202 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQ  202 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTC
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCc
Confidence            9999999999999999999999999864 459999999999999999999999999999  89999999999 9999999


Q ss_pred             HHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCCCCHHH
Q 010851          168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQ  247 (499)
Q Consensus       168 ~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~~~~~~  247 (499)
                      .+++++|+++|++++. +..+.++++++........+..|+..          +.+++.+|..|+|||++|+.+ .+..+
T Consensus       203 ~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~----------gad~~~~d~~g~t~l~~A~~~-~~~~~  270 (285)
T 3d9h_A          203 RACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF----------GADTQAKNAEGKRPVELVPPE-SPLAQ  270 (285)
T ss_dssp             HHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT----------TCCTTCCCTTSCCGGGGSCTT-SHHHH
T ss_pred             HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC----------CCCCCCcCCCCCCHHHHhcCc-cHHHH
Confidence            9999999999999985 77889999999988887766665543          334788999999999999953 33444


Q ss_pred             HHH
Q 010851          248 LQW  250 (499)
Q Consensus       248 l~~  250 (499)
                      ++.
T Consensus       271 ~Ll  273 (285)
T 3d9h_A          271 LFL  273 (285)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.9e-35  Score=277.07  Aligned_cols=214  Identities=21%  Similarity=0.159  Sum_probs=196.4

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+|.+|+||||+|+..|+.++|++|++    .|.+++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g   79 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHG   79 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCC
Confidence            5689999999999999999999999997    7899999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCC----CCcccCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc-ccCCCHHHHH
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGA----NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEAL  161 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~Lh~~  161 (499)
                      +||||+|+..|+.+++++|++.++    +++..|..|.||||+|+..|+.+++++|+++|++++  .++ ..|.|||| +
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~  156 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-H  156 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-H
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-H
Confidence            999999999999999999999987    889999999999999999999999999999999998  777 88999999 9


Q ss_pred             hhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          162 APQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       162 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      |+..++.+++++|+++|++++.++..+.++++++........+..++..          +.+++.+|..|+|||++|+.
T Consensus       157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------ga~~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS----------GADSSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT----------TCCTTCCCTTSCCTTTTCSS
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc----------CCCCCCcCCCCCCHHHHHHh
Confidence            9999999999999999999999999999999999988887776665543          33477899999999999996

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.4e-35  Score=294.12  Aligned_cols=220  Identities=15%  Similarity=0.104  Sum_probs=196.7

Q ss_pred             cccccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCC
Q 010851            4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG   83 (499)
Q Consensus         4 ~l~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d   83 (499)
                      ++.+++.+.+|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++    +
T Consensus         7 ~~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~----~   81 (364)
T 3ljn_A            7 DFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF-GCVDTAKYLASVGEVHS----L   81 (364)
T ss_dssp             ---------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-CCHHHHHHHHHHCCCCC----C
T ss_pred             hccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcc----c
Confidence            456788899999999999999999999999999999999999999999999999998 99999999999999777    4


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHC----CCCCcc-----------------cCCCCCCHHHHHHHcC--CHHHHHHHHH
Q 010851           84 GRGGTPLHHAAKRGLEPTVRLLLSC----GANALV-----------------RNDDCHTALGVARIKG--HINVVRAIES  140 (499)
Q Consensus        84 ~~g~TpL~~A~~~g~~~~v~~Ll~~----ga~~~~-----------------~d~~g~tpL~~A~~~g--~~~~v~~Ll~  140 (499)
                      ..|.||||+|+..|+.++|++|++.    |++++.                 .|..|.||||+|+..|  +.++|++|++
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ  161 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            5799999999999999999999999    888877                 8899999999999999  9999999999


Q ss_pred             cccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCC-----CCCCCcccccccCccccccChHHHHHHHHhhcCCC
Q 010851          141 HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA-----NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEP  215 (499)
Q Consensus       141 ~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~-----~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  215 (499)
                      +|++++  .+|..|+|||| +|+..++.+++++|+++|++     ++..+..+.++++++...+....+..|+..     
T Consensus       162 ~ga~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----  233 (364)
T 3ljn_A          162 LGASPT--AKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-----  233 (364)
T ss_dssp             HTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-----
T ss_pred             cCCCCc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-----
Confidence            999999  99999999999 99999999999999999999     999999999999999998887777665532     


Q ss_pred             ccCCCCCceeeecCCCcchhHhHhhC
Q 010851          216 KFHQPDPSLTIYDQATKIRYKFASAN  241 (499)
Q Consensus       216 ~~~~~~~~~~~~d~~g~tpl~~a~~~  241 (499)
                           +.+++..|..|+|||++|+..
T Consensus       234 -----gad~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          234 -----GIDVNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             -----TCCTTCCCTTSCCHHHHHHHT
T ss_pred             -----CCCCCCCCCCCCCHHHHHHHh
Confidence                 344788999999999999964

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.2e-34  Score=268.54  Aligned_cols=211  Identities=18%  Similarity=0.123  Sum_probs=190.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccC-CCCCCCcHHHHHH
Q 010851           17 KDELLYQWVIAGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-PGGRGGTPLHHAA   94 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~-~d~~g~TpL~~A~   94 (499)
                      |+||||+|+..|+.++|++|++++.++.. +|..|+||||+|+.. |+.+++++|+++|++++... ++..|+||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            78999999999999999999999987654 889999999999998 99999999999995554433 3889999999999


Q ss_pred             HcCCHHHHHHHHHCC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851           95 KRGLEPTVRLLLSCG--ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus        95 ~~g~~~~v~~Ll~~g--a~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      ..|+.+++++|+++|  ++++..|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  157 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE  157 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence            999999999999999  8999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HHHhcC-CCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          173 VVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       173 ~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      +|+++| ++++.++..+.++++++........+..++...         +.+++..|..|+||+++|..
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---------ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---------GAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---------CCCSCCBCTTSCBGGGGCSS
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---------CCCCCccCCCCCcHHHHHHH
Confidence            999999 999999999999999999988887777766222         33478899999999999986

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=282.75  Aligned_cols=217  Identities=21%  Similarity=0.199  Sum_probs=170.8

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCC--------CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccC
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGAS--------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR   81 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--------~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~   81 (499)
                      ...+|..+.++|+.|+..|+.++|++||++|++        ++..|..|.||||+|+..++...++++|++.|+++|.+ 
T Consensus         4 e~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~-   82 (269)
T 4b93_B            4 ETKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT-   82 (269)
T ss_dssp             ---CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC-
T ss_pred             ccccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc-
Confidence            345788899999999999999999999998865        46677889999999998744456899999999999998 


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHH
Q 010851           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL  161 (499)
Q Consensus        82 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~  161 (499)
                       |.+|+||||+|+..|+.++|++|++.|++++.++..|.||||+|+..++.+++++|+++|++++  .+|..|+|||| +
T Consensus        83 -d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~  158 (269)
T 4b93_B           83 -SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-Y  158 (269)
T ss_dssp             -CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-H
T ss_pred             -CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-H
Confidence             8899999999999999999999999999999999999999999999999999999999999999  89999999999 9


Q ss_pred             hhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhC
Q 010851          162 APQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (499)
Q Consensus       162 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~  241 (499)
                      |+..|+.+++++|+++|++++.++..+.+++|++...+....+..|+..          +++++++|+.|+||||+|+.+
T Consensus       159 A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----------Gad~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          159 ACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH----------GASVQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             HHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT----------TCCSCCCCTTSCCSGGGSCTT
T ss_pred             HHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC----------CCCCCCcCCCCCCHHHHHHhC
Confidence            9999999999999999999999999999999999998887777665543          344888999999999999864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.9e-34  Score=274.69  Aligned_cols=221  Identities=21%  Similarity=0.184  Sum_probs=192.2

Q ss_pred             ccCcccc-CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            7 SMNQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         7 ~~~~~~~-d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      +.+.+.+ +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..
T Consensus        28 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~  104 (285)
T 1wdy_A           28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNEC--DFY  104 (285)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTT
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--Ccc
Confidence            3455555 77889999999999999999999999999999999999999999988 8899999999999999988  888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCccc----------CCCCCCHHHHHHHcCCHHHHHHHHHc-ccccccccccccC
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYG  154 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~----------d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g  154 (499)
                      |+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|+++ |++++  .+|..|
T Consensus       105 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g  182 (285)
T 1wdy_A          105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMG  182 (285)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTS
T ss_pred             cCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCC
Confidence            999999999999999999999999998877          77899999999999999999999987 88888  889999


Q ss_pred             CCHHHHHhhhcCC----HHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCC
Q 010851          155 PSFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA  230 (499)
Q Consensus       155 ~t~Lh~~A~~~~~----~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~  230 (499)
                      +|||| +|+..++    .+++++|+++|++++.++..+.++++++........+..++...         +..++..|..
T Consensus       183 ~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---------g~~~~~~~~~  252 (285)
T 1wdy_A          183 RNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE---------HIEINDTDSD  252 (285)
T ss_dssp             CCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS---------SCCTTCCCTT
T ss_pred             CCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc---------CCCccccCCC
Confidence            99999 8888888    88999999999999999888999999988888877766655421         3347788999


Q ss_pred             CcchhHhHhhCC
Q 010851          231 TKIRYKFASANE  242 (499)
Q Consensus       231 g~tpl~~a~~~~  242 (499)
                      |+|||++|+...
T Consensus       253 g~t~l~~A~~~~  264 (285)
T 1wdy_A          253 GKTALLLAVELK  264 (285)
T ss_dssp             SCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcC
Confidence            999999999643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.4e-34  Score=284.80  Aligned_cols=218  Identities=21%  Similarity=0.147  Sum_probs=200.1

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++..  |..|
T Consensus        48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~--~~~g  124 (351)
T 3utm_A           48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGACVNAM--DLWQ  124 (351)
T ss_dssp             TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCC
Confidence            567788999999999999999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccC--------------------------------------------------
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------------------------------------------  116 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d--------------------------------------------------  116 (499)
                      +||||+|+..|+.+++++|+++|++++..+                                                  
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN  204 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence            999999999999999999999999987654                                                  


Q ss_pred             ----CCCCCHHHHHHHc---CCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccc
Q 010851          117 ----DDCHTALGVARIK---GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE  189 (499)
Q Consensus       117 ----~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~  189 (499)
                          ..|.||||+|+..   +..+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.
T Consensus       205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~  281 (351)
T 3utm_A          205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQ  281 (351)
T ss_dssp             CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence                5577999999999   55899999999999999  89999999999 99999999999999999999999999999


Q ss_pred             cccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          190 LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       190 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      ++++++........+..|+..          +.++++.|..|+||+++|.+
T Consensus       282 t~L~~A~~~~~~~~v~~Ll~~----------gad~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          282 TALHRAALAGHLQTCRLLLSY----------GSDPSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT----------TCCTTCCCTTSCCHHHHSCH
T ss_pred             CHHHHHHHcCcHHHHHHHHHc----------CCCCCCcCCCCCChhhhhhH
Confidence            999999988887777665543          33477899999999999964

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.1e-33  Score=265.72  Aligned_cols=211  Identities=18%  Similarity=0.194  Sum_probs=191.2

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      +..+.++||+|+..|+.+.|++|++.+. .++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   79 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHI   79 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc-CcHHHHHHHHHhCCCCCCc--CCCCCCHHHH
Confidence            3467899999999999999999998764 4677889999999999998 9999999999999999988  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++.++++
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  156 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVH  156 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHH
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999998  88999999999 999999999999


Q ss_pred             HHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          173 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       173 ~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      +|+++|++++.++..+.++++++........+..++..          +.++++.|..|+||+++|..
T Consensus       157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ----------GASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT----------TCCSCCCCTTSCCHHHHSCH
T ss_pred             HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC----------CCCCCCCCCCCCCHHHHHHh
Confidence            99999999999999999999999888887666655433          33478899999999999985

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.7e-33  Score=260.54  Aligned_cols=199  Identities=19%  Similarity=0.090  Sum_probs=186.0

Q ss_pred             ccCccc-cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCC-CCCccCCCC
Q 010851            7 SMNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGG   84 (499)
Q Consensus         7 ~~~~~~-~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~~~~~~d~   84 (499)
                      +.+.+. .|.+|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++++ +++..  +.
T Consensus        14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~   90 (223)
T 2f8y_A           14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MH   90 (223)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHBTTSCTTCC--CT
T ss_pred             CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CC
Confidence            344544 488999999999999999999999999999999999999999999998 99999999999987 88887  88


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhh
Q 010851           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (499)
Q Consensus        85 ~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~  164 (499)
                      .|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+.
T Consensus        91 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~  167 (223)
T 2f8y_A           91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAR  167 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHH
T ss_pred             CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999  89999999999 9999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhh
Q 010851          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK  211 (499)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  211 (499)
                      .++.+++++|+++|++++.++..+.++++++........+..+.+..
T Consensus       168 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            99999999999999999999999999999999888877776666443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.3e-33  Score=269.60  Aligned_cols=191  Identities=20%  Similarity=0.088  Sum_probs=181.6

Q ss_pred             ccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCC-CCCccCCCCCCCcHH
Q 010851           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPL   90 (499)
Q Consensus        12 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~TpL   90 (499)
                      ..|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|+ +++.+  +..|.|||
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L  128 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPL  128 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCC--CTTCCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccc--CCCCCcHH
Confidence            3589999999999999999999999999999999999999999999998 99999999999997 89988  88999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHH
Q 010851           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKI  170 (499)
Q Consensus        91 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~  170 (499)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.++
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~  205 (253)
T 1yyh_A          129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYET  205 (253)
T ss_dssp             HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999  89999999999 9999999999


Q ss_pred             HHHHHhcCCCCCCCCcccccccCccccccChHHHHHHH
Q 010851          171 WVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (499)
Q Consensus       171 ~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  208 (499)
                      +++|+++|++++.++..++++++++...+....+..+.
T Consensus       206 v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999998888866655543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.6e-33  Score=263.04  Aligned_cols=187  Identities=22%  Similarity=0.200  Sum_probs=178.7

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcH
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   89 (499)
                      .+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|.||
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~  109 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNAV--NQNGCTP  109 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc-CHHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            567799999999999999999999999999999999999999999999998 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHH
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK  169 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~  169 (499)
                      ||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~  186 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVE  186 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999  89999999999 999999999


Q ss_pred             HHHHHHhcCCCCCCCCcccccccCccccccChH
Q 010851          170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR  202 (499)
Q Consensus       170 ~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~  202 (499)
                      ++++|+++|++++.++..+.++++++.......
T Consensus       187 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  219 (231)
T 3aji_A          187 EAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI  219 (231)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHH
Confidence            999999999999999999999999987654433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-34  Score=288.33  Aligned_cols=225  Identities=16%  Similarity=0.139  Sum_probs=202.1

Q ss_pred             cccccCccccC-CCchHHHHHHHHcCCHHHHHHHH--------HcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcC
Q 010851            4 SLNSMNQHQQR-QSKDELLYQWVIAGDVDAIRALR--------SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG   74 (499)
Q Consensus         4 ~l~~~~~~~~d-~~g~t~L~~Aa~~g~~~~v~~Ll--------~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~g   74 (499)
                      .|...+.+.+| ..|+||||+|+..|+.++|++|+        ++|+++|.+|..|.||||+|+.. |+.+++++|+++|
T Consensus       111 ~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~g  189 (373)
T 2fo1_E          111 PITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAG  189 (373)
T ss_dssp             CCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTT
T ss_pred             HhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc-ChHHHHHHHHHCC
Confidence            34456778888 78999999999999998887776        79999999999999999999998 9999999999999


Q ss_pred             CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCCcccCCCCCCHHHHHHHcC---CHHHHHHHHHccccccc-
Q 010851           75 ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKG---HINVVRAIESHICYFCG-  147 (499)
Q Consensus        75 a~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g---a~~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~g~~~~~-  147 (499)
                      ++++.+  |..|.||||+|+..|+.+++++|+++|   ++++..|..|.||||+|+..+   +.+++++|+++|++++. 
T Consensus       190 a~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~  267 (373)
T 2fo1_E          190 ADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD  267 (373)
T ss_dssp             CCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC
T ss_pred             CCCccc--CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccc
Confidence            999998  889999999999999999999999998   899999999999999999998   89999999999999871 


Q ss_pred             -----ccccccCCCHHHHHhhhcCCHHHHHHHHhcC-CCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCC
Q 010851          148 -----WLREFYGPSFLEALAPQLMSRKIWVVVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPD  221 (499)
Q Consensus       148 -----~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  221 (499)
                           ..+|..|+|||| +|+..++.+++++|++++ ++++.++..+.++++++...+....+..|+..          +
T Consensus       268 ~~~~~~~~d~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----------g  336 (373)
T 2fo1_E          268 GAARKDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ----------G  336 (373)
T ss_dssp             SGGGTSSSSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----------T
T ss_pred             cccccCcccccCCCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc----------C
Confidence                 125779999999 999999999999999886 99999999999999999988887777665543          3


Q ss_pred             CceeeecCCCcchhHhHhhCC
Q 010851          222 PSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       222 ~~~~~~d~~g~tpl~~a~~~~  242 (499)
                      ..++..|..|+|||++|+.+.
T Consensus       337 ad~~~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          337 ASVEAVDATDHTARQLAQANN  357 (373)
T ss_dssp             CCSSCCCSSSCCHHHHHHHTT
T ss_pred             CCccCCCCCCCCHHHHHHHcC
Confidence            448889999999999999743

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-33  Score=272.70  Aligned_cols=185  Identities=21%  Similarity=0.139  Sum_probs=162.7

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCC-------------
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-------------   76 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~-------------   76 (499)
                      .+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++             
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQS  116 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcc
Confidence            678899999999999999999999999999999999999999999999987 999999999998866             


Q ss_pred             ----------------------------------CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCC-CCC
Q 010851           77 ----------------------------------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-CHT  121 (499)
Q Consensus        77 ----------------------------------~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~t  121 (499)
                                                        ++.+  +..|+||||+|+..|+.++|++|+++|++++.++.. |+|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t  194 (282)
T 1oy3_D          117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT  194 (282)
T ss_dssp             ---------------------------CCCGGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcC
Confidence                                              5555  789999999999999999999999999999999854 999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccC
Q 010851          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (499)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~  200 (499)
                      |||+|+..|+.++|++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.+++.++..+..
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          195 PLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            9999999999999999999999999  99999999999 9999999999999999999999999999999888775554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-33  Score=288.69  Aligned_cols=218  Identities=22%  Similarity=0.160  Sum_probs=181.2

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+.+..++.|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|++++.+  +..|
T Consensus         4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g   80 (437)
T 1n11_A            4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDD   80 (437)
T ss_dssp             -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTS
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCC--CCCC
Confidence            567788899999999999999999999999999999999999999999999998 9999999999999999988  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      +||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+  ..+..|.|||| +|+..+
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g  157 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYG  157 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999887  78889999999 899999


Q ss_pred             CHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      +.+++++|+++|++++..+..+.++++.+........+..++...          ..++..+..|.|||++|+.
T Consensus       158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----------~~~~~~~~~g~t~L~~A~~  221 (437)
T 1n11_A          158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG----------GSPHSPAWNGYTPLHIAAK  221 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGT----------CCSCCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC----------CCCCCcCCCCCCHHHHHHH
Confidence            999999999999999988888888888888777766555544221          1234455566666666664

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-34  Score=273.23  Aligned_cols=216  Identities=20%  Similarity=0.208  Sum_probs=187.2

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGA----SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~----~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+|.+|.||||+|+..|+.+++++|++.+.    +++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g   78 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRG   78 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCC
Confidence            5679999999999999999999999998765    7899999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccc-cCCCHHH
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGAN------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLE  159 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~g~t~Lh  159 (499)
                      +||||+|+..|+.+++++|++.|++      ++..+..|.||||+|+..|+.+++++|+++|++++  .++. .|+||||
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~  156 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH  156 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH
Confidence            9999999999999999999999876      56788899999999999999999999999999999  8887 9999999


Q ss_pred             HHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHh
Q 010851          160 ALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (499)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~  239 (499)
                       +|+..++.+++++|+++|++++.++..+.++++++........+..|+...        .++...+.+..|.|+++.+.
T Consensus       157 -~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g--------a~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          157 -LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT--------LENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             -HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS--------CGGGSSCCCCCTTTCCCCC-
T ss_pred             -HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcc--------hhhhhcCCccchHHHHhhhc
Confidence             999999999999999999999999999999999999988877666655332        23334567888888888776


Q ss_pred             h
Q 010851          240 A  240 (499)
Q Consensus       240 ~  240 (499)
                      +
T Consensus       228 ~  228 (236)
T 1ikn_D          228 E  228 (236)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.6e-33  Score=275.90  Aligned_cols=216  Identities=21%  Similarity=0.168  Sum_probs=182.3

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCChHHHHHHHcCCcHHHHHHHHHcCCCCCccC-----------
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYR-----------   81 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~-----------   81 (499)
                      +.+|.|+||.|++.|++++|++||++|+++|.++. .|+||||+||.. |+.++|++||++|++++.++           
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            44689999999999999999999999999999876 499999999998 99999999999998776542           


Q ss_pred             --------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc----------CCCCCCHHHHHHHcCC
Q 010851           82 --------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGH  131 (499)
Q Consensus        82 --------------------~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~----------d~~g~tpL~~A~~~g~  131 (499)
                                          .|..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence                                2567899999999999999999999999987654          4568999999999999


Q ss_pred             HHHHHHHHH-cccccccccccccCCCHHHHHhhhcC----CHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHH
Q 010851          132 INVVRAIES-HICYFCGWLREFYGPSFLEALAPQLM----SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA  206 (499)
Q Consensus       132 ~~~v~~Ll~-~g~~~~~~~~~~~g~t~Lh~~A~~~~----~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~  206 (499)
                      .++|++|++ .|++++  .+|..|+|+|| .++..+    ...++++|+++|++++.++..+.+++|.+........+..
T Consensus       181 ~~~v~~LL~~~gad~n--~~d~~g~t~l~-~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~  257 (337)
T 4g8k_A          181 VEVLKILLDEMGADVN--ACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  257 (337)
T ss_dssp             HHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhccCCCcC--ccCCCCCcHHH-HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence            999999996 589998  89999999998 443322    2468899999999999999999999999888888776665


Q ss_pred             HHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCC
Q 010851          207 LWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       207 l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~  242 (499)
                      +...         .+..++.+|..|+||||+|+...
T Consensus       258 Ll~~---------~~~~vn~~d~~G~TpL~~A~~~g  284 (337)
T 4g8k_A          258 LLEQ---------EHIEINDTDSDGKTALLLAVELK  284 (337)
T ss_dssp             HHTS---------TTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             HHHh---------cCCcccCcCCCCCCHHHHHHHcC
Confidence            4432         23448889999999999999643

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.3e-33  Score=261.44  Aligned_cols=197  Identities=21%  Similarity=0.229  Sum_probs=187.3

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcC-CCCCccCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGR   85 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~g-a~~~~~~~d~~   85 (499)
                      +.+.+..|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++| .+++..  +..
T Consensus        34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~  110 (237)
T 3b7b_A           34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQ--DDG  110 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT-TCHHHHHHHHTTTCCCTTCC--CTT
T ss_pred             CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCC
Confidence            567788899999999999999999999999999999999999999999999998 9999999999999 899988  889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..
T Consensus       111 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~  187 (237)
T 3b7b_A          111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARE  187 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHH
Q 010851          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK  209 (499)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  209 (499)
                      ++.+++++|+++|++++.++..+.++++++........++.+.+
T Consensus       188 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888766666553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.9e-33  Score=262.59  Aligned_cols=193  Identities=20%  Similarity=0.168  Sum_probs=182.5

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCC----CCCccC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYR   81 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga----~~~~~~   81 (499)
                      .+.+.+.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.. |+.+++++|+++++    +++.. 
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~-  112 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEAR-  112 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCC-
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccccc-
Confidence            3578888999999999999999999999999999999999999999999999998 99999999999998    78877 


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHH
Q 010851           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEA  160 (499)
Q Consensus        82 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~  160 (499)
                       |..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| 
T Consensus       113 -~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-  188 (241)
T 1k1a_A          113 -NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH-  188 (241)
T ss_dssp             -CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-
T ss_pred             -CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-
Confidence             8899999999999999999999999999999998 889999999999999999999999999999  89999999999 


Q ss_pred             HhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHH
Q 010851          161 LAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  204 (499)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  204 (499)
                      +|+..++.+++++|+++|++++.++..+.++++++........+
T Consensus       189 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            99999999999999999999999999999999999876664433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.4e-33  Score=285.86  Aligned_cols=221  Identities=23%  Similarity=0.187  Sum_probs=184.5

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+.+..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++++..  +..|
T Consensus       169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g  245 (437)
T 1n11_A          169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGSANAE--SVQG  245 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCC
Confidence            355667777888888888888888888888888888888788888888888876 8888888888888888877  7788


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      .||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .++..|+|||| +|+..+
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g  322 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--ATTRMGYTPLH-VASHYG  322 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCSSCCCHHH-HHHHSS
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC--CCCCCCCCHHH-HHHHcC
Confidence            888888888888888888888888888888888889999888888899999998888888  88888999999 888899


Q ss_pred             CHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCCC
Q 010851          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  243 (499)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~~  243 (499)
                      +.+++++|+++|++++.++..+.++++++...+....+..|++.          +.+++..|..|+|||++|.....
T Consensus       323 ~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~----------ga~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN----------GASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----------TCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC----------cCCCCCCCCCCCCHHHHHHHcCc
Confidence            99999999999999988888888888888888877666655443          33478899999999999997443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=271.32  Aligned_cols=185  Identities=19%  Similarity=0.177  Sum_probs=151.3

Q ss_pred             ccccCCCchHHHHHHHHcCCH-HHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCc
Q 010851           10 QHQQRQSKDELLYQWVIAGDV-DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~-~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   88 (499)
                      .+..|..|.||||+|+..++. .++++|+++|+++|.+|.+|+||||+|+.. |+.+++++|++.|++++.+  +..|.|
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~~a~~~~~--~~~g~t  121 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH-GRADLIPLLLKHGANAGAR--NADQAV  121 (269)
T ss_dssp             ------------------------------CCCCTTCCCTTSCCHHHHHHHT-TCTTHHHHHHHTTCCTTCC--CTTCCC
T ss_pred             ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCcCcc--CCCCCC
Confidence            566788999999999988876 488999999999999999999999999998 9999999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCH
Q 010851           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (499)
Q Consensus        89 pL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~  168 (499)
                      |||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++  .++..|+|||| +|+..|+.
T Consensus       122 ~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~  198 (269)
T 4b93_B          122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHV  198 (269)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCH
T ss_pred             ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCH
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999 99999999


Q ss_pred             HHHHHHHhcCCCCCCCCcccccccCccccccC
Q 010851          169 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (499)
Q Consensus       169 ~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~  200 (499)
                      +++++|+++|++++.++..++++++++.+...
T Consensus       199 ~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999999999976543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-32  Score=265.72  Aligned_cols=221  Identities=20%  Similarity=0.167  Sum_probs=194.7

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHH
Q 010851           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      .+|.|+||+|+..|+.++|++|+++|++++.. +..|+||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLR--KKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHH
Confidence            36899999999999999999999999999988 78899999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccc----------cccCCCHHHHHhh
Q 010851           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------EFYGPSFLEALAP  163 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~~~g~t~Lh~~A~  163 (499)
                      +..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .+          +..|.|||| +|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~  156 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAA  156 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHH
Confidence            99999999999999999999999999999999999999999999999999988  55          788999999 999


Q ss_pred             hcCCHHHHHHHHhc-CCCCCCCCcccccccCccccccCh----HHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhH
Q 010851          164 QLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQP----RAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFA  238 (499)
Q Consensus       164 ~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a  238 (499)
                      ..++.+++++|+++ |++++..+..+.++++.+......    ..+..+...          +..++..|..|+||||+|
T Consensus       157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~----------g~~~~~~~~~g~t~L~~A  226 (285)
T 1wdy_A          157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH----------GADVNVRGERGKTPLILA  226 (285)
T ss_dssp             HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT----------TCCSSCCCTTSCCHHHHH
T ss_pred             HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc----------CCCCCCcCCCCCcHHHHH
Confidence            99999999999998 999999999999999988876663    222222221          344788999999999999


Q ss_pred             hhCCCCHHHHHHHH
Q 010851          239 SANEGDKHQLQWLD  252 (499)
Q Consensus       239 ~~~~~~~~~l~~~~  252 (499)
                      +... ....+..+.
T Consensus       227 ~~~~-~~~~v~~Ll  239 (285)
T 1wdy_A          227 VEKK-HLGLVQRLL  239 (285)
T ss_dssp             HHTT-CHHHHHHHH
T ss_pred             HHcC-CHHHHHHHH
Confidence            9743 333344444

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.9e-32  Score=255.18  Aligned_cols=182  Identities=19%  Similarity=0.126  Sum_probs=172.6

Q ss_pred             ccCCCchHHHHHHHHcCCHHHHHHHHHcC--CCCcc-cCCCCChHHHHHHHcCCcHHHHHHHHHcC--CCCCccCCCCCC
Q 010851           12 QQRQSKDELLYQWVIAGDVDAIRALRSQG--ASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELG--ANINAYRPGGRG   86 (499)
Q Consensus        12 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~-~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~g--a~~~~~~~d~~g   86 (499)
                      .+|..|.||||+|+..|+.+++++|+++|  .+++. .|..|+||||+|+.. |+.+++++|+++|  ++++.+  +..|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~--~~~g  107 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKI--TNQG  107 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH-CCHHHHHHHHSSSSCCCTTCC--CTTC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccccC--CcCC
Confidence            47899999999999999999999999999  66666 788999999999998 9999999999999  888887  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcc-cccccccccccCCCHHHHHhhhc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++| ++++  .+|..|+|||| +|+..
T Consensus       108 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~  184 (228)
T 2dzn_A          108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAE  184 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHT
T ss_pred             CCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHc
Confidence            99999999999999999999999999999999999999999999999999999999 8998  89999999999 99999


Q ss_pred             CCHHHHHHHH-hcCCCCCCCCcccccccCcccccc
Q 010851          166 MSRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDV  199 (499)
Q Consensus       166 ~~~~~~~~Ll-~~ga~~~~~~~~~~~~l~~~~~~~  199 (499)
                      ++.+++++|+ ++|++++.++..+.++++++.+..
T Consensus       185 ~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             TCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             CCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence            9999999999 999999999999999999987654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.4e-32  Score=258.34  Aligned_cols=189  Identities=18%  Similarity=0.113  Sum_probs=173.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCC-----CccCCCCCCCcH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRPGGRGGTP   89 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~-----~~~~~d~~g~Tp   89 (499)
                      .|+||||+|+..|+.++|++|+++ |++++.+|..|+||||+|+.. |+.+++++|+++|+++     +.+  |..|+||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAPELVFEPMTSE--LYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGCCCCST--TTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCchhcccccccc--CCCCcCH
Confidence            589999999999999999999997 999999999999999999998 9999999999999987     545  7789999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCC-------------CCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCC
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRND-------------DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPS  156 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-------------~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t  156 (499)
                      ||+|+..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|+++|++++  .+|..|+|
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t  156 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNT  156 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCC
Confidence            9999999999999999999999988765             79999999999999999999999999999  89999999


Q ss_pred             HHHHHhhhcCCHHHH----HHHHhcCCCC------CCCCcccccccCccccccChHHHHHHHHh
Q 010851          157 FLEALAPQLMSRKIW----VVVIPCGTAN------PSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (499)
Q Consensus       157 ~Lh~~A~~~~~~~~~----~~Ll~~ga~~------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  210 (499)
                      ||| +|+..++.+++    ++|+++|++.      +.++..+.++++++...+....+..|++.
T Consensus       157 ~L~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          157 VLH-ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHH-HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHH-HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999 99999999988    9999999988      47788899999999988888777776633

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=265.48  Aligned_cols=184  Identities=18%  Similarity=0.189  Sum_probs=176.2

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+.+.+|.+|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++..   ..|
T Consensus        82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~---~~g  157 (285)
T 3d9h_A           82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQPE---SDL  157 (285)
T ss_dssp             TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSCS---CTT
T ss_pred             CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCCCCC---CCC
Confidence            467888999999999999999999999999999999999999999999999998 9999999999999999864   469


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  . +..|+|||| +|+..+
T Consensus       158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~-~~~g~t~L~-~A~~~~  233 (285)
T 3d9h_A          158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q-GKGQDSPLH-AVVRTA  233 (285)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--C-CBTTBCHHH-HHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--C-CCCCCCHHH-HHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999998  3 889999999 999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCcccccccCccccc
Q 010851          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (499)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~  198 (499)
                      +.+++++|+++|++++.++..++++++++...
T Consensus       234 ~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          234 SEELACLLMDFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence            99999999999999999999999999999844

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=6.1e-33  Score=270.97  Aligned_cols=214  Identities=20%  Similarity=0.201  Sum_probs=192.7

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      .+.+|.|+||+|+..|+.++|++|+++|+++|..|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~  112 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHA  112 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence            456789999999999999999999999999999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-cccccc------------------------
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCG------------------------  147 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~------------------------  147 (499)
                      |+..|+.++|++|+++|++++..|..|.||||+|+..++.++++.|+.. +.+++.                        
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999999999999999999999999999999887754 333320                        


Q ss_pred             ccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeee
Q 010851          148 WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIY  227 (499)
Q Consensus       148 ~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  227 (499)
                      ...+..|.|||| +|+..++.+++++|+++|++++.++..+.++++++...+....+..|+..          +.+++++
T Consensus       193 ~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----------gad~~~~  261 (299)
T 1s70_B          193 VRHAKSGGTALH-VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN----------LCDMEAV  261 (299)
T ss_dssp             CCCTTTCCCHHH-HHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----------TCCTTCC
T ss_pred             hhhcCCCCCHHH-HHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc----------CCCCCCc
Confidence            134678999999 99999999999999999999999999999999999998888777665543          2347889


Q ss_pred             cCCCcchhHhHhh
Q 010851          228 DQATKIRYKFASA  240 (499)
Q Consensus       228 d~~g~tpl~~a~~  240 (499)
                      |..|+|||++|.+
T Consensus       262 d~~g~t~l~~A~~  274 (299)
T 1s70_B          262 NKVGQTAFDVADE  274 (299)
T ss_dssp             CTTSCCTTTSCCS
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999975

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.9e-32  Score=256.66  Aligned_cols=227  Identities=17%  Similarity=0.136  Sum_probs=200.7

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcH
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   89 (499)
                      .+..|..|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++... +..|.||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~-~~~~~t~   79 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYISKGAIVDQLG-GDLNSTP   79 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCB-TTTTBCH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHh-CCHHHHHHHHHcCCcchhhc-CCcCCCh
Confidence            355688999999999999999999999999999999999999999999998 99999999999999998763 5569999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC-CH
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM-SR  168 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~-~~  168 (499)
                      ||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..+ ..
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~  156 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLM-WAAYRTHSV  156 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCSS
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHH-HHHHhCChH
Confidence            999999999999999999999999999999999999999999999999999999998  89999999999 777554 58


Q ss_pred             HHHHHHHhcCCCCCCCCc-ccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCCCCHHH
Q 010851          169 KIWVVVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQ  247 (499)
Q Consensus       169 ~~~~~Ll~~ga~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~~~~~~  247 (499)
                      +++++|++.|++.+..+. .+.++++.+........+..+...          +..++..|..|+|||++|+... ....
T Consensus       157 ~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------g~~~~~~~~~g~t~l~~A~~~~-~~~~  225 (240)
T 3eu9_A          157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----------GANVDAQNIKGESALDLAKQRK-NVWM  225 (240)
T ss_dssp             TTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----------TCCTTCBCTTSCBHHHHHHHTT-CHHH
T ss_pred             HHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc----------CCCCCCcCCCCCCHHHHHHHcC-cHHH
Confidence            999999999999998886 788999999988887777665543          2337788999999999999643 3333


Q ss_pred             HHHHH
Q 010851          248 LQWLD  252 (499)
Q Consensus       248 l~~~~  252 (499)
                      +..+.
T Consensus       226 v~~L~  230 (240)
T 3eu9_A          226 INHLQ  230 (240)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.5e-33  Score=280.87  Aligned_cols=230  Identities=16%  Similarity=0.122  Sum_probs=202.1

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHc----CCCCCc---
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA---   79 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~----ga~~~~---   79 (499)
                      +.+.+.+|..|.||||+|+..|+.++|++|+++|++++.  .+|.||||+|+.. |+.+++++|+++    |++++.   
T Consensus        43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~  119 (364)
T 3ljn_A           43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLN  119 (364)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHh
Confidence            567888999999999999999999999999999996644  5799999999998 999999999999    888776   


Q ss_pred             --------------cCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 010851           80 --------------YRPGGRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC  143 (499)
Q Consensus        80 --------------~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  143 (499)
                                    .  |..|.||||+|+..|  +.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|+
T Consensus       120 ~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~  197 (364)
T 3ljn_A          120 ECDEREVNEIGSHVK--HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP  197 (364)
T ss_dssp             CCCCCCEEEETTEEE--EESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred             hcchHhhhhhccccC--CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                          6  778999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             c-----cccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCC--Cc
Q 010851          144 Y-----FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDE--PK  216 (499)
Q Consensus       144 ~-----~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~  216 (499)
                      +     ++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++++++...+....+..|+......  ..
T Consensus       198 ~~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  274 (364)
T 3ljn_A          198 SKSSLRLD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA  274 (364)
T ss_dssp             CSSSCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred             cccccccc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhc
Confidence            8     88  89999999999 999999999999999999999999999999999999999988888877432111  01


Q ss_pred             cCCCCCceeeecCCCcchhHhHhhCCCC
Q 010851          217 FHQPDPSLTIYDQATKIRYKFASANEGD  244 (499)
Q Consensus       217 ~~~~~~~~~~~d~~g~tpl~~a~~~~~~  244 (499)
                      ....+......+..++||+++|+.....
T Consensus       275 ~~~~~~~~~~~~~~~~~~l~~aa~~~~~  302 (364)
T 3ljn_A          275 CPYHNGTTVLPDRVVWLDFVPAAADPSK  302 (364)
T ss_dssp             CTTBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred             CcccCcccccccccccccchhhhhccCH
Confidence            1112222446788899999999864433

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.3e-32  Score=251.16  Aligned_cols=164  Identities=24%  Similarity=0.220  Sum_probs=158.6

Q ss_pred             CccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCc
Q 010851            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   88 (499)
                      ..|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+|
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t  103 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTK--DFSGKT  103 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTSCC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCc
Confidence            3567899999999999999999999999999999999999999999999998 9999999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCH
Q 010851           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (499)
Q Consensus        89 pL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~  168 (499)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~  180 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQ  180 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcH
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999 99999999


Q ss_pred             HHHHHHHhcC
Q 010851          169 KIWVVVIPCG  178 (499)
Q Consensus       169 ~~~~~Ll~~g  178 (499)
                      +++++|+++|
T Consensus       181 ~~v~~Ll~~~  190 (192)
T 2rfm_A          181 EVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.2e-31  Score=239.54  Aligned_cols=160  Identities=25%  Similarity=0.350  Sum_probs=152.5

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      ....+.++|++|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   86 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAV--DHAGMTPLRL   86 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHH
Confidence            356789999999999999999999999999999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~  163 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAE  163 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999998  89999999999 999999999999


Q ss_pred             HHHhcC
Q 010851          173 VVIPCG  178 (499)
Q Consensus       173 ~Ll~~g  178 (499)
                      +|++.|
T Consensus       164 ~L~~~G  169 (169)
T 2y1l_E          164 ILQKLN  169 (169)
T ss_dssp             HHHTC-
T ss_pred             HHHHcC
Confidence            999876

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.98  E-value=4.7e-32  Score=270.09  Aligned_cols=216  Identities=19%  Similarity=0.160  Sum_probs=194.9

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCc
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   88 (499)
                      .+..+..|.|+||.|+..|+.+.|+.|+.. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+|
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t   93 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY-NRVRIVQLLLQHGADVHAK--DKGGLV   93 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCC
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCc
Confidence            345677899999999999999999999875 899999999999999999998 9999999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccc------------------
Q 010851           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR------------------  150 (499)
Q Consensus        89 pL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~------------------  150 (499)
                      |||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  ..                  
T Consensus        94 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~~~l~~a~~~~~~~  171 (351)
T 3utm_A           94 PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT--LVNCHGKSAVDMAPTPELRE  171 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCSSHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCcchHHHhhhhhHH
Confidence            9999999999999999999999999999999999999999999999999999999876  33                  


Q ss_pred             ------------------------------------cccCCCHHHHHhhhc---CCHHHHHHHHhcCCCCCCCCcccccc
Q 010851          151 ------------------------------------EFYGPSFLEALAPQL---MSRKIWVVVIPCGTANPSKPLRFELV  191 (499)
Q Consensus       151 ------------------------------------~~~g~t~Lh~~A~~~---~~~~~~~~Ll~~ga~~~~~~~~~~~~  191 (499)
                                                          +..|.|||| +|+..   +..+++++|+++|++++.++..+.++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~-~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  250 (351)
T 3utm_A          172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP  250 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH-HHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             HHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH-HHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCH
Confidence                                                356788999 78877   56899999999999999999999999


Q ss_pred             cCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhC
Q 010851          192 IYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (499)
Q Consensus       192 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~  241 (499)
                      ++++...+....+..|+..          +..++..|..|+||||+|+..
T Consensus       251 L~~A~~~g~~~~v~~Ll~~----------ga~~n~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          251 LHVAAERAHNDVMEVLHKH----------GAKMNALDSLGQTALHRAALA  290 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHT----------TCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHC----------CCCCCCcCCCCCCHHHHHHHc
Confidence            9999998888777665543          334788999999999999963

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=3.5e-32  Score=256.52  Aligned_cols=179  Identities=23%  Similarity=0.149  Sum_probs=164.8

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCC------CCccC
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN------INAYR   81 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~------~~~~~   81 (499)
                      .+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++      ++.. 
T Consensus        36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~-  113 (236)
T 1ikn_D           36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKAT-  113 (236)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCC-
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhHHHHhhcc-
Confidence            36788999999999999999999999999999999999999999999999998 999999999999986      3555 


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHH
Q 010851           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEA  160 (499)
Q Consensus        82 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~  160 (499)
                       +..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.++|++|+++|++++  .+|..|+|||| 
T Consensus       114 -~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-  189 (236)
T 1ikn_D          114 -NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-  189 (236)
T ss_dssp             -CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-
T ss_pred             -CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-
Confidence             78899999999999999999999999999999998 99999999999999999999999999999  99999999999 


Q ss_pred             HhhhcCCHHHHHHHHhcCCCCC--CCCccccccc
Q 010851          161 LAPQLMSRKIWVVVIPCGTANP--SKPLRFELVI  192 (499)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~l  192 (499)
                      +|+..++.+++++|+++|++..  ..+..++++.
T Consensus       190 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  223 (236)
T 1ikn_D          190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY  223 (236)
T ss_dssp             GCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCC
T ss_pred             HHHccCchHHHHHHHHcchhhhhcCCccchHHHH
Confidence            9999999999999999999765  3333344443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=7.6e-32  Score=238.71  Aligned_cols=159  Identities=22%  Similarity=0.290  Sum_probs=150.4

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHH
Q 010851           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (499)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~   94 (499)
                      +...|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+.  |+.+++++|+++|++++.+  |..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGANPDLK--DRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS--SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc--CcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH
Confidence            456899999999999999999999999999999999999999985  8899999999999999998  889999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccc-cccccccccCCCHHHHHhhhcCCHHHHHH
Q 010851           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY-FCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (499)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~  173 (499)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++  .+|..|+|||| +|+..++.+++++
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~  155 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSL  155 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 46  89999999999 9999999999999


Q ss_pred             HHhcCCC
Q 010851          174 VIPCGTA  180 (499)
Q Consensus       174 Ll~~ga~  180 (499)
                      |+++|++
T Consensus       156 Ll~~GAd  162 (162)
T 1ihb_A          156 MQANGAG  162 (162)
T ss_dssp             HHHTC--
T ss_pred             HHHhCCC
Confidence            9999985

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=9e-33  Score=268.62  Aligned_cols=192  Identities=16%  Similarity=0.154  Sum_probs=177.9

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      .-+.+.+|..|.||||+|+..|+.++|++|+++|++++.+  +|+||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus        21 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g   95 (285)
T 3kea_A           21 SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATL-EDTKIVKILLFSGLDDSQF--DDKG   95 (285)
T ss_dssp             STTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTS-SSCHHHHHHHHTTCCTTCC--CTTS
T ss_pred             hCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCC
Confidence            3467889999999999999999999999999999999887  499999999997 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCC-CCHHHHHHHcCCHHHHHHHHHcccccccccccc-cCCCHHHHHhhh
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQ  164 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~g~t~Lh~~A~~  164 (499)
                      +||||+|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|++..    +. .|+|||| +|+.
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~----~~~~g~t~L~-~A~~  170 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIH-ITIK  170 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC----CCSTHHHHHH-HHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc----cccCCccHHH-HHHH
Confidence            999999999999999999999999999999999 799999999999999999999998875    33 8999999 9999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCcccccc-cCccccccChHHHHHHH
Q 010851          165 LMSRKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVIALW  208 (499)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~  208 (499)
                      .++.+++++|+++|++++.++..+.++ ++++........+..|+
T Consensus       171 ~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll  215 (285)
T 3kea_A          171 NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF  215 (285)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHT
T ss_pred             cChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999997 89988887766655543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=2.4e-31  Score=244.10  Aligned_cols=189  Identities=21%  Similarity=0.188  Sum_probs=171.8

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      +..+.|+||+|+..|+.+.|+.|+.++. +++..|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDRGADINLQ--NSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            3567899999999999999999999876 9999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHH-HCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcc-cccccccccccCCCHHHHHhhhcCC---
Q 010851           93 AAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMS---  167 (499)
Q Consensus        93 A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~g~t~Lh~~A~~~~~---  167 (499)
                      |+..|+.+++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++  .+|..|+|||| +|+..++   
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~  155 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQ  155 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchh
Confidence            99999999999999 667899999999999999999999999999999999 8888  89999999999 8888887   


Q ss_pred             --HHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHH
Q 010851          168 --RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (499)
Q Consensus       168 --~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  208 (499)
                        .+++++|+++|++++.++..+.++++++........+..+.
T Consensus       156 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  198 (201)
T 3hra_A          156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA  198 (201)
T ss_dssp             HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence              99999999999999999999999999988887766655543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=5.7e-32  Score=242.22  Aligned_cols=167  Identities=23%  Similarity=0.191  Sum_probs=154.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHH
Q 010851           17 KDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~   95 (499)
                      +.||||+|+..|+.++|++|++.+.+ ++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHIL--AKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCchhh--cccCCCHHHHHHH
Confidence            56899999999999999999999987 889999999999999998 9999999999999999998  8899999999999


Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHH
Q 010851           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (499)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll  175 (499)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  155 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIE  155 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hcCCCCCCCCcccc
Q 010851          176 PCGTANPSKPLRFE  189 (499)
Q Consensus       176 ~~ga~~~~~~~~~~  189 (499)
                      ++|++....+..+.
T Consensus       156 ~~~~~~~~~~~~~~  169 (172)
T 3v30_A          156 NHILKLFQSNLVPA  169 (172)
T ss_dssp             HHHHHHSCC-----
T ss_pred             HHHHHHhcccCCCC
Confidence            99988766654443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.98  E-value=5.7e-32  Score=273.18  Aligned_cols=197  Identities=15%  Similarity=0.078  Sum_probs=185.2

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcC---CCCCccCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYRP   82 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~g---a~~~~~~~   82 (499)
                      .+++.|.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++++   ++++..  
T Consensus       155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~--  231 (373)
T 2fo1_E          155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEEL--  231 (373)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCC--
T ss_pred             cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhc--
Confidence            4678899999999999999999999999999999999999999999999999998 9999999999998   899988  


Q ss_pred             CCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCcc--------cCCCCCCHHHHHHHcCCHHHHHHHHHcc-cccccccc
Q 010851           83 GGRGGTPLHHAAKRG---LEPTVRLLLSCGANALV--------RNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLR  150 (499)
Q Consensus        83 d~~g~TpL~~A~~~g---~~~~v~~Ll~~ga~~~~--------~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~  150 (499)
                      |..|.||||+|+..+   +.+++++|+++|++++.        .|..|.||||+|+..|+.++|++|++++ ++++  .+
T Consensus       232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~  309 (373)
T 2fo1_E          232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQ  309 (373)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CC
T ss_pred             CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--Cc
Confidence            889999999999998   89999999999999886        6779999999999999999999999887 8998  99


Q ss_pred             cccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHH
Q 010851          151 EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (499)
Q Consensus       151 ~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  208 (499)
                      |..|+|||| +|+..++.+++++|+++|++++.++..+.++++++...+....+..|.
T Consensus       310 d~~g~TpL~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll  366 (373)
T 2fo1_E          310 DEDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD  366 (373)
T ss_dssp             CTTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999 999999999999999999999999999999999999888877666554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.5e-31  Score=238.23  Aligned_cols=160  Identities=23%  Similarity=0.231  Sum_probs=154.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~   95 (499)
                      +|.||||+|+..|+.++|++|++.|.+++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLL--GKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHH
Confidence            588999999999999999999999999999999999999999998 9999999999999999998  8899999999999


Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHH
Q 010851           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (499)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll  175 (499)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIE  155 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998  89999999999 999999999999999


Q ss_pred             hcCCCC
Q 010851          176 PCGTAN  181 (499)
Q Consensus       176 ~~ga~~  181 (499)
                      +++.+.
T Consensus       156 ~~~~~~  161 (167)
T 3v31_A          156 SHLLKL  161 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.1e-31  Score=243.31  Aligned_cols=165  Identities=20%  Similarity=0.217  Sum_probs=158.4

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHH-HcCCCCCccCCCCCC
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRG   86 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g   86 (499)
                      .+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+ ..+++++..  |..|
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g  106 (201)
T 3hra_A           30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKH--NRYG  106 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC--CTTS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhccCcccccc--cCCC
Confidence            47788999999999999999999999999999999999999999999999998 9999999999 667799988  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCC-CCCcccCCCCCCHHHHHHHcCC-----HHHHHHHHHcccccccccccccCCCHHHH
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGH-----INVVRAIESHICYFCGWLREFYGPSFLEA  160 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~  160 (499)
                      .||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++     .+++++|+++|++++  .+|..|+|||| 
T Consensus       107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-  183 (201)
T 3hra_A          107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD-  183 (201)
T ss_dssp             CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-
Confidence            99999999999999999999999 9999999999999999999998     999999999999999  99999999999 


Q ss_pred             HhhhcCCHHHHHHHHhcC
Q 010851          161 LAPQLMSRKIWVVVIPCG  178 (499)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~g  178 (499)
                      +|+..++.+++++|+++|
T Consensus       184 ~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          184 YANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHTCHHHHHHHHTCC
T ss_pred             HHHHcCCHhHHHHHHhcC
Confidence            999999999999999887

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=8.8e-31  Score=244.38  Aligned_cols=169  Identities=22%  Similarity=0.209  Sum_probs=163.0

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      +.+.+.+|..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+.. |+.+++++|+++|++++.+  |..
T Consensus        48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~  124 (223)
T 2f8y_A           48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAV--DDL  124 (223)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTT
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh-CcHHHHHHHHHcCCCCcCc--CCC
Confidence            56778899999999999999999999999999987 8999999999999999998 9999999999999999998  889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~  201 (223)
T 2f8y_A          125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQER  201 (223)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHHHhcCCCC
Q 010851          166 MSRKIWVVVIPCGTAN  181 (499)
Q Consensus       166 ~~~~~~~~Ll~~ga~~  181 (499)
                      ++.+++++|+++|+..
T Consensus       202 ~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          202 MHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             TCHHHHHHHHHTTCSS
T ss_pred             cchHHHHHHHHcCCCc
Confidence            9999999999999865

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=2.4e-31  Score=259.61  Aligned_cols=187  Identities=21%  Similarity=0.228  Sum_probs=173.6

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++..  |..|
T Consensus        63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g  139 (299)
T 1s70_B           63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAV--NSEG  139 (299)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCc--CCCC
Confidence            567888999999999999999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCCc--------------------------ccCCCCCCHHHHHHHcCCHHHHHHHH
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSC-GANAL--------------------------VRNDDCHTALGVARIKGHINVVRAIE  139 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~-ga~~~--------------------------~~d~~g~tpL~~A~~~g~~~~v~~Ll  139 (499)
                      .||||+|+..++.++++.|+.. |.+++                          ..+..|.||||+|+..|+.+++++|+
T Consensus       140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  219 (299)
T 1s70_B          140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI  219 (299)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence            9999999999999999877643 44433                          35678999999999999999999999


Q ss_pred             HcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCcccccc
Q 010851          140 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV  199 (499)
Q Consensus       140 ~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~  199 (499)
                      ++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++++++..+.
T Consensus       220 ~~g~d~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          220 QARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             TTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG
T ss_pred             HcCCCCC--CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH
Confidence            9999999  99999999999 999999999999999999999999999999999997643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=3.6e-31  Score=238.75  Aligned_cols=167  Identities=23%  Similarity=0.255  Sum_probs=156.9

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHH
Q 010851           15 QSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      .++.++||.|+..|+.++|++|+++ +.+++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGARINVM--NRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence            4678999999999999999999997 678999999999999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHH
Q 010851           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~  173 (499)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~  156 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRER  156 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999  99999999999 9999999999999


Q ss_pred             HHhcCCCCCCCCcc
Q 010851          174 VIPCGTANPSKPLR  187 (499)
Q Consensus       174 Ll~~ga~~~~~~~~  187 (499)
                      |+++|++++..+..
T Consensus       157 L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          157 AEKMGQNLNRIPYK  170 (179)
T ss_dssp             HHHTTCCCSCBCCC
T ss_pred             HHHhhcCcccCCcc
Confidence            99999999876643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=1.1e-30  Score=259.94  Aligned_cols=217  Identities=20%  Similarity=0.107  Sum_probs=187.7

Q ss_pred             ccCccccCC-CchHHHHHHHHcCCHHHHHHHHHcCCCC---------------------------------cccCCCCCh
Q 010851            7 SMNQHQQRQ-SKDELLYQWVIAGDVDAIRALRSQGASL---------------------------------EWMDKEGKT   52 (499)
Q Consensus         7 ~~~~~~~d~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---------------------------------~~~d~~g~T   52 (499)
                      ++++|.++. .|+||||+|+..|+.++|++||++|+++                                 +.+|..|+|
T Consensus        48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t  127 (337)
T 4g8k_A           48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT  127 (337)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred             CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence            577887765 5999999999999999999999998765                                 456778999


Q ss_pred             HHHHHHHcCCcHHHHHHHHHcCCCCCccC--------CCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCcccCCCCCCHH
Q 010851           53 PLIVACMDSGLINVAKTLIELGANINAYR--------PGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTAL  123 (499)
Q Consensus        53 pLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~--------~d~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpL  123 (499)
                      |||+|+.. |+.+++++|+++|++++...        .+..|.||||+|+..|+.++|++||+ .|++++.+|..|.|+|
T Consensus       128 ~l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l  206 (337)
T 4g8k_A          128 AFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  206 (337)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             HHHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHH
Confidence            99999998 99999999999999998652        24468999999999999999999995 6999999999999999


Q ss_pred             HHHHHcCC----HHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhc-CCCCCCCCcccccccCccccc
Q 010851          124 GVARIKGH----INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQD  198 (499)
Q Consensus       124 ~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~l~~~~~~  198 (499)
                      |.++..+.    ..++++|+++|++++  .+|..|+|||| +|+..++.+++++|+.. |++++.++..++++++++...
T Consensus       207 ~~~~~~~~~~~~~~i~~lLl~~gad~n--~~d~~g~t~L~-~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          207 IHALLSSDDSDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  283 (337)
T ss_dssp             HHHHHHSCTTTHHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHHHHcCcccHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence            99887554    468999999999999  99999999999 99999999999999985 899999999999999999998


Q ss_pred             cChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhhCC
Q 010851          199 VQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       199 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~~~  242 (499)
                      +....+..|++..        .+  +     +.++||++|+.+.
T Consensus       284 g~~~iv~~Ll~~G--------Ad--~-----n~~~~L~~A~~~~  312 (337)
T 4g8k_A          284 KLKKIAELLCKRG--------AS--T-----DCGDLVMTARRNY  312 (337)
T ss_dssp             TCHHHHHHHHTTS--------CS--S-----TTCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHCC--------CC--C-----CCCCHHHHHHHcC
Confidence            8877776655332        22  3     3467999999643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=3.9e-31  Score=235.10  Aligned_cols=160  Identities=24%  Similarity=0.241  Sum_probs=149.6

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~   91 (499)
                      .|.+|.|+||+|+..|+.++|++|++ .+.+++..+..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-NRVSVVEYLLQHGADVHAK--DKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCcc--CCCCCCHHH
Confidence            47889999999999999999999998 5568888899999999999998 9999999999999999998  889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHH
Q 010851           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (499)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~  171 (499)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|.. ++.+++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~  156 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQ  156 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHH
T ss_pred             HHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999 7766 899999


Q ss_pred             HHHHhcCC
Q 010851          172 VVVIPCGT  179 (499)
Q Consensus       172 ~~Ll~~ga  179 (499)
                      ++|+++|+
T Consensus       157 ~~L~~~gA  164 (165)
T 3twr_A          157 DLLRGDAA  164 (165)
T ss_dssp             HHHHTC--
T ss_pred             HHHhhccc
Confidence            99999886

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=4.9e-31  Score=235.63  Aligned_cols=138  Identities=33%  Similarity=0.468  Sum_probs=130.0

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      .++++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|+++|.+  |..
T Consensus        26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gadvn~~--d~~  102 (169)
T 4gpm_A           26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSD  102 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCC
Confidence            3678899999999999999999999999999999999999999999999999998 9999999999999999998  889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  146 (499)
                      |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++.
T Consensus       103 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          103 GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999986

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.5e-31  Score=255.46  Aligned_cols=169  Identities=18%  Similarity=0.111  Sum_probs=157.0

Q ss_pred             ccCccc----cCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCccc-----------CCCCChHHHHHHHcCCcHHHHH
Q 010851            7 SMNQHQ----QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAK   68 (499)
Q Consensus         7 ~~~~~~----~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~-----------d~~g~TpLh~Aa~~~g~~~~v~   68 (499)
                      +.+++.    +|..|.||||+|+..   |+.++|++|+++|++++..           |..|+||||+|+.. |+.++++
T Consensus        29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~  107 (256)
T 2etb_A           29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVK  107 (256)
T ss_dssp             TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHH
T ss_pred             CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc-CCHHHHH
Confidence            567776    899999999999999   9999999999999877633           36799999999998 9999999


Q ss_pred             HHHHcCCCCCccCCCCC-------------CCcHHHHHHHcCCHHHHHHHHH---CCCCCcccCCCCCCHHHHHHH--cC
Q 010851           69 TLIELGANINAYRPGGR-------------GGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARI--KG  130 (499)
Q Consensus        69 ~Ll~~ga~~~~~~~d~~-------------g~TpL~~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpL~~A~~--~g  130 (499)
                      +|+++|++++.+  +..             |+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .+
T Consensus       108 ~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~  185 (256)
T 2etb_A          108 LLVENGADVHLR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN  185 (256)
T ss_dssp             HHHHTTCCTTCC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             HHHHcCCCCCcc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccC
Confidence            999999999998  554             9999999999999999999999   999999999999999999999  88


Q ss_pred             CHH-------HHHHHHHccccc-------ccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCC
Q 010851          131 HIN-------VVRAIESHICYF-------CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (499)
Q Consensus       131 ~~~-------~v~~Ll~~g~~~-------~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~  181 (499)
                      +.+       ++++|+++|+++       +  .+|..|+|||| +|+..++.+++++|+++|.+.
T Consensus       186 ~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          186 SPENSALVIHMYDGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence            888       999999999999       7  89999999999 999999999999999998753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.2e-31  Score=256.08  Aligned_cols=190  Identities=16%  Similarity=0.138  Sum_probs=172.2

Q ss_pred             chHHHHHHHHcCCHH----HHHHHHHcCCCCcc----cCCCCChHHHHHHHc--CCcHHHHHHHHHcCCCCCcc------
Q 010851           17 KDELLYQWVIAGDVD----AIRALRSQGASLEW----MDKEGKTPLIVACMD--SGLINVAKTLIELGANINAY------   80 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~----~d~~g~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~~~~------   80 (499)
                      |+||||+|+..|+.+    ++++|+++|++++.    +|..|+||||+|+..  .|+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            899999999999997    66777789999998    899999999999973  27899999999999887633      


Q ss_pred             ---CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCC-------------CCCHHHHHHHcCCHHHHHHHHH---c
Q 010851           81 ---RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-------------CHTALGVARIKGHINVVRAIES---H  141 (499)
Q Consensus        81 ---~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~tpL~~A~~~g~~~~v~~Ll~---~  141 (499)
                         +.|..|+||||+|+..|+.+++++|+++|++++.+|..             |.||||+|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence               12478999999999999999999999999999999886             9999999999999999999999   9


Q ss_pred             ccccccccccccCCCHHHHHhhh--cCCHH-------HHHHHHhcCCCC-------CCCCcccccccCccccccChHHHH
Q 010851          142 ICYFCGWLREFYGPSFLEALAPQ--LMSRK-------IWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAVI  205 (499)
Q Consensus       142 g~~~~~~~~~~~g~t~Lh~~A~~--~~~~~-------~~~~Ll~~ga~~-------~~~~~~~~~~l~~~~~~~~~~~~~  205 (499)
                      |++++  .+|..|+|||| +|+.  .++.+       ++++|+++|+++       +.++..+.++++++...+....+.
T Consensus       162 ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          162 PASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             CCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence            99999  99999999999 8887  78888       999999999999       888999999999999988877777


Q ss_pred             HHHH
Q 010851          206 ALWK  209 (499)
Q Consensus       206 ~l~~  209 (499)
                      .|++
T Consensus       239 ~Ll~  242 (256)
T 2etb_A          239 HILQ  242 (256)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6663

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-30  Score=228.34  Aligned_cols=152  Identities=24%  Similarity=0.257  Sum_probs=146.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~   95 (499)
                      ++.|+||+|+..|+.++|++|+++|++++ .|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+.
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   76 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAAS   76 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHH
Confidence            35799999999999999999999999886 588999999999998 9999999999999999998  8899999999999


Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHH
Q 010851           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (499)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~L  174 (499)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999  89999999999 99999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.9e-31  Score=255.95  Aligned_cols=202  Identities=16%  Similarity=0.178  Sum_probs=163.5

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHH----cCCCCc----ccCCCCChHHHHHHHc--CCcHHHHHHHHHcCCCC
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLE----WMDKEGKTPLIVACMD--SGLINVAKTLIELGANI   77 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~----~~d~~g~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~   77 (499)
                      ...+..|..|+||||+|+..|+.++|+.|++    .+++++    ..|..|+||||+|+..  .|+.+++++|+++|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            4456678899999999999999998888886    566665    3578899999999963  37889999999988652


Q ss_pred             -------Cc--cCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCC--------------CCCCHHHHHHHcCCHHH
Q 010851           78 -------NA--YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND--------------DCHTALGVARIKGHINV  134 (499)
Q Consensus        78 -------~~--~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~--------------~g~tpL~~A~~~g~~~~  134 (499)
                             +.  .++|..|+||||+|+..|+.++|++|+++|++++.++.              .|.||||+|+..|+.++
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                   22  22366899999999999999999999999999988887              79999999999999999


Q ss_pred             HHHHHH---cccccccccccccCCCHHHHHhhhcCC---------HHHHHHHHhcCCCCCC-------CCcccccccCcc
Q 010851          135 VRAIES---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANPS-------KPLRFELVIYPS  195 (499)
Q Consensus       135 v~~Ll~---~g~~~~~~~~~~~g~t~Lh~~A~~~~~---------~~~~~~Ll~~ga~~~~-------~~~~~~~~l~~~  195 (499)
                      |++|++   +|++++  .+|..|+|||| +|+..++         .+++++|+++|++++.       ++..+.++++++
T Consensus       164 v~~Ll~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          164 VKFLLQNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHhcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            999999   889988  88999999999 8888777         7899999999998864       777888999998


Q ss_pred             ccccChHHHHHHHHhhc
Q 010851          196 LQDVQPRAVIALWKAKI  212 (499)
Q Consensus       196 ~~~~~~~~~~~l~~~~~  212 (499)
                      ...+....+..|+....
T Consensus       241 ~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          241 ASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHTTCHHHHHHHHHHHT
T ss_pred             HHhChHHHHHHHHHCCC
Confidence            88888877777775554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=2.8e-30  Score=242.99  Aligned_cols=198  Identities=19%  Similarity=0.204  Sum_probs=183.9

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      +.+.+.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+.. |+.+++++|+++|++++.+  +..
T Consensus        32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~  108 (240)
T 3eu9_A           32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSLI--DGE  108 (240)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred             CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc-CCHHHHHHHHHcCCCCccc--CCC
Confidence            567888899999999999999999999999999999886654 599999999998 9999999999999999998  889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCC-HHHHHHHHHcccccccccccc-cCCCHHHHHhh
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESHICYFCGWLREF-YGPSFLEALAP  163 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~-~g~t~Lh~~A~  163 (499)
                      |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++ .+++++|++.|++++  ..+. .|.|||| +|+
T Consensus       109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~  185 (240)
T 3eu9_A          109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAV  185 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHH
T ss_pred             CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHH
Confidence            9999999999999999999999999999999999999999997776 899999999999998  7776 8999999 999


Q ss_pred             hcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHh
Q 010851          164 QLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (499)
Q Consensus       164 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  210 (499)
                      ..++.+++++|+++|++++.++..+.++++++.+......+..+.+.
T Consensus       186 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          186 LAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            99999999999999999999999999999999999888777766543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=252.73  Aligned_cols=165  Identities=21%  Similarity=0.255  Sum_probs=157.4

Q ss_pred             CccccCCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHH-----HcCCcHHHHHHHHHcCCCCCccCC
Q 010851            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVAC-----MDSGLINVAKTLIELGANINAYRP   82 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpLh~Aa-----~~~g~~~~v~~Ll~~ga~~~~~~~   82 (499)
                      ..|.+|..|+||||+|+..|+.++|++|+++|+ +++..|..|+||||+|+     .. ++.+++++|++.|.+++..  
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~--  179 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKA--  179 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCC--
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCcccc--
Confidence            377899999999999999999999999999998 99999999999999999     54 7899999999999999887  


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cccccccccccccCCCHHHHH
Q 010851           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEAL  161 (499)
Q Consensus        83 d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~Lh~~  161 (499)
                      +..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|++ .|++++  .+|..|+|||| +
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~  256 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-V  256 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-H
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-H
Confidence            8899999999999999999999999999999999999999999999999999999999 899999  99999999999 9


Q ss_pred             hhhcCCHHHHHHHHhcCC
Q 010851          162 APQLMSRKIWVVVIPCGT  179 (499)
Q Consensus       162 A~~~~~~~~~~~Ll~~ga  179 (499)
                      |+..++.+++++|++++.
T Consensus       257 A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          257 ALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHTCHHHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHhccC
Confidence            999999999999998763

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=5e-31  Score=254.30  Aligned_cols=168  Identities=18%  Similarity=0.136  Sum_probs=151.3

Q ss_pred             ccCCCchHHHHHHHHc---CCHHHHHHHHHcCCCC-------cc----cCCCCChHHHHHHHcCCcHHHHHHHHHcCCCC
Q 010851           12 QQRQSKDELLYQWVIA---GDVDAIRALRSQGASL-------EW----MDKEGKTPLIVACMDSGLINVAKTLIELGANI   77 (499)
Q Consensus        12 ~~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~-------~~----~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~   77 (499)
                      .+|..|.||||+|+..   |+.++|++|+++|+++       +.    .|..|+||||+|+.. |+.+++++|+++|+++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ga~~  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVTLLVENGADV  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc-CCHHHHHHHHHCCCCc
Confidence            3588999999999987   9999999999998652       22    567899999999998 9999999999999999


Q ss_pred             CccCCCC--------------CCCcHHHHHHHcCCHHHHHHHHH---CCCCCcccCCCCCCHHHHHHHcCC---------
Q 010851           78 NAYRPGG--------------RGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------  131 (499)
Q Consensus        78 ~~~~~d~--------------~g~TpL~~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpL~~A~~~g~---------  131 (499)
                      +.+  +.              .|+||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+..|+         
T Consensus       128 ~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~  205 (273)
T 2pnn_A          128 QAA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV  205 (273)
T ss_dssp             TCC--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred             Ccc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH
Confidence            998  54              79999999999999999999999   999999999999999999999998         


Q ss_pred             HHHHHHHHHccccccc-----ccccccCCCHHHHHhhhcCCHHHHHHHHhcCC-CCCC
Q 010851          132 INVVRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGT-ANPS  183 (499)
Q Consensus       132 ~~~v~~Ll~~g~~~~~-----~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga-~~~~  183 (499)
                      .+++++|+++|++++.     ..+|..|+|||| +|+..++.+++++|+++|+ |+..
T Consensus       206 ~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIHEPEC  262 (273)
T ss_dssp             HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCCCchh
Confidence            8999999999999862     148999999999 9999999999999999999 4443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=5.4e-30  Score=225.39  Aligned_cols=154  Identities=27%  Similarity=0.322  Sum_probs=147.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~   94 (499)
                      .|.|+||+|+..|+.+++++|+++ +.+++..|..|+||||+ +.. |+.+++++|+++|++++.+  |..|+||||+|+
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~   76 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAA   76 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHH
Confidence            368999999999999999999998 45899999999999999 876 9999999999999999998  889999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHH
Q 010851           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (499)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~L  174 (499)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++  .+|..|+|||| +|+..++.+++++|
T Consensus        77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~L  152 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDIL  152 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHH
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 8988  89999999999 99999999999999


Q ss_pred             Hhc
Q 010851          175 IPC  177 (499)
Q Consensus       175 l~~  177 (499)
                      +++
T Consensus       153 l~~  155 (156)
T 1bd8_A          153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1e-30  Score=259.23  Aligned_cols=178  Identities=13%  Similarity=0.079  Sum_probs=152.3

Q ss_pred             ccCccc-cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCc---HHHHHHHHHcC-CCCCccC
Q 010851            7 SMNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL---INVAKTLIELG-ANINAYR   81 (499)
Q Consensus         7 ~~~~~~-~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~---~~~v~~Ll~~g-a~~~~~~   81 (499)
                      ++++|. +|..|+||||+|+..|+.++|++||++|++++.+|..|+||||+|+.. |+   .++++.|++++ ++++.+ 
T Consensus       120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~-  197 (327)
T 1sw6_A          120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILE-  197 (327)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEE-
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCC-
Confidence            477888 899999999999999999999999999999999999999999999997 77   68888888886 789988 


Q ss_pred             CCCCCCcHHHHHHH----cCCHHHHHHHHHC--------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q 010851           82 PGGRGGTPLHHAAK----RGLEPTVRLLLSC--------------------GANALVRNDDCHTALGVARIKGHINVVRA  137 (499)
Q Consensus        82 ~d~~g~TpL~~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~d~~g~tpL~~A~~~g~~~~v~~  137 (499)
                       |..|+||||+|+.    .|+.+++++|++.                    |++++.+|..|.||||+|+.      +++
T Consensus       198 -d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~  270 (327)
T 1sw6_A          198 -DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKW  270 (327)
T ss_dssp             -CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHH
T ss_pred             -CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHH
Confidence             8899999999999    8999999999987                    89999999999999999985      899


Q ss_pred             HHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccc
Q 010851          138 IESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (499)
Q Consensus       138 Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~  198 (499)
                      |+++  +++  .+|..|+|||| +|+..++.+++++|+++|++++.++..++++++++.+.
T Consensus       271 Ll~~--~~n--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          271 IIAN--MLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHH--TTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHHh--CCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            9988  466  78999999999 99999999999999999999999999999999988753

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=1.6e-30  Score=252.73  Aligned_cols=187  Identities=14%  Similarity=0.074  Sum_probs=166.4

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC-
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG-   86 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g-   86 (499)
                      .+.+.+  +|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  +..| 
T Consensus        55 ~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~  129 (285)
T 3kea_A           55 ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGW  129 (285)
T ss_dssp             GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGC--SSSGG
T ss_pred             CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCcc--CCCCC
Confidence            344444  599999999999999999999999999999999999999999998 9999999999999999998  7888 


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCH-HHHHhhhc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQL  165 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~-Lh~~A~~~  165 (499)
                      .||||+|+..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++++  .+|..|+|| || +|+..
T Consensus       130 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~  205 (285)
T 3kea_A          130 KTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDN  205 (285)
T ss_dssp             GSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHc
Confidence            79999999999999999999999887322 289999999999999999999999999999  999999998 99 99999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHh
Q 010851          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (499)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  210 (499)
                      ++.+++++|+++|++++..+.       .+...+....+..++..
T Consensus       206 ~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~  243 (285)
T 3kea_A          206 KDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEK  243 (285)
T ss_dssp             TCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHc
Confidence            999999999999999998873       23344555555555533

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.6e-30  Score=248.80  Aligned_cols=164  Identities=20%  Similarity=0.116  Sum_probs=150.1

Q ss_pred             CCCchHHHHHHH---HcCCHHHHHHHHHcCCC-----------CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCc
Q 010851           14 RQSKDELLYQWV---IAGDVDAIRALRSQGAS-----------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA   79 (499)
Q Consensus        14 d~~g~t~L~~Aa---~~g~~~~v~~Ll~~g~~-----------~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~   79 (499)
                      |..|.||||+|+   ..|+.++|++|+++|++           ++..|..|+||||+|+.. |+.+++++|+++|++++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc-CCHHHHHHHHhCCCCcCc
Confidence            477999999999   77999999999998743           445556899999999998 999999999999999999


Q ss_pred             cCCC--------------CCCCcHHHHHHHcCCHHHHHHHHH---CCCCCcccCCCCCCHHHHHHHcCC---------HH
Q 010851           80 YRPG--------------GRGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------IN  133 (499)
Q Consensus        80 ~~~d--------------~~g~TpL~~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpL~~A~~~g~---------~~  133 (499)
                      +  +              ..|+||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+..++         .+
T Consensus       122 ~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~  199 (260)
T 3jxi_A          122 Q--ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK  199 (260)
T ss_dssp             C--CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHH
T ss_pred             c--ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHH
Confidence            8  5              589999999999999999999999   999999999999999999999888         79


Q ss_pred             HHHHHHHccccccc-----ccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCC
Q 010851          134 VVRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (499)
Q Consensus       134 ~v~~Ll~~g~~~~~-----~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~  181 (499)
                      ++++|+++|++++.     ..+|..|+|||| +|+..|+.+++++|+++|++.
T Consensus       200 ~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCc
Confidence            99999999999831     278999999999 999999999999999999754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=1.9e-30  Score=248.14  Aligned_cols=192  Identities=16%  Similarity=0.114  Sum_probs=168.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHH----HHHHcCCCCcccC----CCCChHHHHHH---HcCCcHHHHHHHHHcCCC------
Q 010851           14 RQSKDELLYQWVIAGDVDAIR----ALRSQGASLEWMD----KEGKTPLIVAC---MDSGLINVAKTLIELGAN------   76 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~----~Ll~~g~~~~~~d----~~g~TpLh~Aa---~~~g~~~~v~~Ll~~ga~------   76 (499)
                      +.-|+|+||.|++.|+.+.|+    +|++.|++++..+    ..|+||||+|+   .. |+.+++++|+++|++      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchHh
Confidence            456899999999999999554    4455999998776    77999999999   55 999999999999854      


Q ss_pred             ---CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC--------------CCCCCHHHHHHHcCCHHHHHHHH
Q 010851           77 ---INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIE  139 (499)
Q Consensus        77 ---~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~tpL~~A~~~g~~~~v~~Ll  139 (499)
                         .+..+.|..|+||||+|+..|+.++|++|+++|++++.++              ..|.||||+|+..|+.++|++|+
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence               2222225689999999999999999999999999999998              68999999999999999999999


Q ss_pred             H---cccccccccccccCCCHHHHHhhhcCC---------HHHHHHHHhcCCCC-------CCCCcccccccCccccccC
Q 010851          140 S---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQ  200 (499)
Q Consensus       140 ~---~g~~~~~~~~~~~g~t~Lh~~A~~~~~---------~~~~~~Ll~~ga~~-------~~~~~~~~~~l~~~~~~~~  200 (499)
                      +   +|++++  .+|..|+|||| +|+..++         .+++++|+++|+++       +.++..+.++++++...+.
T Consensus       161 ~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          161 ENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             hccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            9   999999  99999999999 8887776         79999999999998       5688899999999999888


Q ss_pred             hHHHHHHHH
Q 010851          201 PRAVIALWK  209 (499)
Q Consensus       201 ~~~~~~l~~  209 (499)
                      ...+..|++
T Consensus       238 ~~~v~~Ll~  246 (260)
T 3jxi_A          238 IGIFQHIIR  246 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877777663

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=2.4e-30  Score=244.79  Aligned_cols=168  Identities=12%  Similarity=0.031  Sum_probs=125.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      +..|.||||.|+..|+.++++.||++|++++.. ..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNA   77 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence            457999999999999999999999999999865 7899999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCC-CHHHHHh--hhcCCHHH
Q 010851           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALA--PQLMSRKI  170 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~-t~Lh~~A--~~~~~~~~  170 (499)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .++..|. |||| +|  +..++.++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~  154 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQC  154 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHH
Confidence            99999999999999999999999999999999999999999999999999999  8887776 9999 88  78899999


Q ss_pred             HHHHHhcCCCCCCCCccc
Q 010851          171 WVVVIPCGTANPSKPLRF  188 (499)
Q Consensus       171 ~~~Ll~~ga~~~~~~~~~  188 (499)
                      +++|+++|++.+..+..+
T Consensus       155 ~~~Ll~~~a~~~~~~~~~  172 (239)
T 1ycs_B          155 SQFLYGVQEKMGIMNKGV  172 (239)
T ss_dssp             HHHHHHHHHHTTTTGGGE
T ss_pred             HHHHHHhhhcccccccce
Confidence            999999999988765443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.9e-30  Score=239.27  Aligned_cols=191  Identities=13%  Similarity=0.043  Sum_probs=128.4

Q ss_pred             HHHHHHcCCCCcccC---CCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 010851           33 IRALRSQGASLEWMD---KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG  109 (499)
Q Consensus        33 v~~Ll~~g~~~~~~d---~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  109 (499)
                      |+.||++|++++..+   ..|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+++++|+++|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALT-GELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHH-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHc-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            456677776665443   3455667777776 7777777777777777776  667777777777777777777777777


Q ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc-ccCCCHHHHHh--hhcCCHHHHHHHHhcCCCCCCCCc
Q 010851          110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCGTANPSKPL  186 (499)
Q Consensus       110 a~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~Lh~~A--~~~~~~~~~~~Ll~~ga~~~~~~~  186 (499)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++++  .++ ..|+|||| +|  +..++.+++++|+++|++++..+.
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQSMGLMNS  154 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCCcccccC
Confidence            7777777777777777777777777777777777776  554 57777777 66  777777777777777777777776


Q ss_pred             ccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          187 RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       187 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      .+.++++.......           .+.+...+.+..++..|..|+|||++|+.
T Consensus       155 ~~~~~l~~~~~~~~-----------~~~ll~~ga~~~~~~~d~~G~TpL~~A~~  197 (229)
T 2vge_A          155 GAVYALWDYSAEFG-----------DELSFREGESVTVLRRDGPEETDWWWAAL  197 (229)
T ss_dssp             GEEEESSCBCCSST-----------TBCCBCTTCEEEEEESSCTTCSSEEEEEE
T ss_pred             CchHHHHHHhhccc-----------cccCccccccccccccCCCcccHHHHHHH
Confidence            66666664333322           11222223444478899999999999996

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-30  Score=245.29  Aligned_cols=183  Identities=19%  Similarity=0.084  Sum_probs=166.7

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcH
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   89 (499)
                      .+..+.+|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~n~~--d~~g~tp   90 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSP--DSHGWTP   90 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCH
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCH
Confidence            345677899999999999999999999999999999999999999999998 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccC-CCCCCHHHHH--HHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVA--RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      ||+|+..|+.+++++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++|++++  .+|..|.|+++ .++...
T Consensus        91 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~~l~-~~~~~~  167 (229)
T 2vge_A           91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYALW-DYSAEF  167 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT--TSGGGEEEESS-CBCCSS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc--cccCCchHHHH-HHhhcc
Confidence            999999999999999999999999986 6999999999  99999999999999999999  88999999999 444433


Q ss_pred             CHHHHHHHHhcCCC--CCCCCcccccccCccccccCh
Q 010851          167 SRKIWVVVIPCGTA--NPSKPLRFELVIYPSLQDVQP  201 (499)
Q Consensus       167 ~~~~~~~Ll~~ga~--~~~~~~~~~~~l~~~~~~~~~  201 (499)
                         ..++|++.|++  .+.++..+.++++++...+..
T Consensus       168 ---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          168 ---GDELSFREGESVTVLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             ---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred             ---ccccCccccccccccccCCCcccHHHHHHHcCCc
Confidence               23678899998  667788899999999887763

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=2.1e-29  Score=249.68  Aligned_cols=198  Identities=14%  Similarity=-0.014  Sum_probs=164.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC
Q 010851           19 ELLYQWVIAGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (499)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g   97 (499)
                      +.+|+|+..+..+++++|++.|+++|. +|..|+||||+||.. |+.++|++||++|++++.+  |..|+||||+|+..|
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSV  175 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhc
Confidence            345888888889999999999999999 899999999999998 9999999999999999998  889999999999999


Q ss_pred             C---HHHHHHHHHCC-CCCcccCCCCCCHHHHHHH----cCCHHHHHHHHHc--------------------cccccccc
Q 010851           98 L---EPTVRLLLSCG-ANALVRNDDCHTALGVARI----KGHINVVRAIESH--------------------ICYFCGWL  149 (499)
Q Consensus        98 ~---~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~~  149 (499)
                      +   .++++.|++.+ ++++.+|..|+||||+|+.    .|+.+++++|++.                    |++++  .
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~--~  253 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN--D  253 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc--c
Confidence            8   78888888887 7899999999999999999    8999999999987                    77777  8


Q ss_pred             ccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecC
Q 010851          150 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ  229 (499)
Q Consensus       150 ~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~  229 (499)
                      ++..|+|||| .|+.      +++|+++  +++.++..+++++|++........+..|+..          +++++++|+
T Consensus       254 ~~~~g~t~L~-~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~----------Gad~~~~d~  314 (327)
T 1sw6_A          254 KNGERKDSIL-ENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDY----------GADPFIANK  314 (327)
T ss_dssp             ------CHHH-HHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT----------TCCTTCCCT
T ss_pred             ccccCCChhH-HHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----------CCCCcccCC
Confidence            9999999999 6764      8899998  5788888999999999998887777665543          344788999


Q ss_pred             CCcchhHhHhh
Q 010851          230 ATKIRYKFASA  240 (499)
Q Consensus       230 ~g~tpl~~a~~  240 (499)
                      .|+||||+|+.
T Consensus       315 ~G~TpL~~A~~  325 (327)
T 1sw6_A          315 SGLRPVDFGAG  325 (327)
T ss_dssp             TSCCGGGGTCC
T ss_pred             CCCCHHHHHHh
Confidence            99999999986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=7.8e-29  Score=213.04  Aligned_cols=133  Identities=26%  Similarity=0.309  Sum_probs=110.1

Q ss_pred             cCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC-C
Q 010851            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR-G   86 (499)
Q Consensus         8 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~-g   86 (499)
                      .+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.  |+.+++++|+++|++++.+  |.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNCA--DPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT--SCHHHHHHHHHHTCCSSCC--BTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc--CCHHHHHHHHHCCCCCCCc--CCCCC
Confidence            4667778888888888888888888888888888888888888888888885  7788888888888888877  667 7


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  144 (499)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8888888888888888888888888888888888888888888888888888888765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=4.6e-29  Score=219.77  Aligned_cols=143  Identities=25%  Similarity=0.240  Sum_probs=120.7

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCc-H
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT-P   89 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T-p   89 (499)
                      +..++.|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+ . |+.+++++|+++|++++.+  |..|+| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~--d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c-CCHHHHHHHHHcCCCCCCc--CCCCCcHH
Confidence            356888999999999999999999999999999999999999999986 5 9999999999999999998  889999 9


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHH
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE  159 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh  159 (499)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|.|+.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCcccc
Confidence            999999999999999999999999999999999999999999999999999999999  89999999887

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=242.17  Aligned_cols=187  Identities=17%  Similarity=0.138  Sum_probs=174.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCC-CCCccCCCCCCCcHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLHH   92 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~TpL~~   92 (499)
                      .+.+++|.|+..|+.+.++.|++.+.+  +|.+|..|+||||+|+.. |+.+++++|+++|+ +++..  |..|+||||+
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~~  151 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH-ANFPVVQQLLDSGVCKVDKQ--NRAGYSPIML  151 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTSCCCTTCC--CTTSCCHHHH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC-CCHHHHHHHHHCCCCcCCCC--CCCCCCHHHH
Confidence            345778999999999999999988766  889999999999999998 99999999999998 99998  8999999999


Q ss_pred             HH-----HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCC
Q 010851           93 AA-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (499)
Q Consensus        93 A~-----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~  167 (499)
                      |+     ..++.+++++|++.|++++..|..|+||||+|+..|+.++|++|+++|++++  .+|..|+|||| +|+..++
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g~  228 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHGH  228 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTC
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCCC
Confidence            99     6688999999999999999999999999999999999999999999999999  99999999999 9999999


Q ss_pred             HHHHHHHHh-cCCCCCCCCcccccccCccccccChHHHHHHH
Q 010851          168 RKIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (499)
Q Consensus       168 ~~~~~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  208 (499)
                      .+++++|++ .|++++.++..+.++++++...+....+..|+
T Consensus       229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  270 (276)
T 4hbd_A          229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY  270 (276)
T ss_dssp             HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999 89999999999999999999988877776655

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=5e-28  Score=216.44  Aligned_cols=143  Identities=25%  Similarity=0.296  Sum_probs=132.3

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcH
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   89 (499)
                      .+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~  105 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIY--DWNGGTP  105 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            677899999999999999999999999999999999999999999999998 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCH
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF  157 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~  157 (499)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++++.  .++..|.||
T Consensus       106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p  171 (172)
T 3v30_A          106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP  171 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999988  778888776

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=4.9e-28  Score=208.05  Aligned_cols=134  Identities=18%  Similarity=0.225  Sum_probs=129.7

Q ss_pred             CCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCC-
Q 010851           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-  118 (499)
Q Consensus        40 g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~-  118 (499)
                      +++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+. |+.+++++|+++|++++.+|.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAAR-GQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHc-CCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence            478899999999999999998 9999999999999999998  8899999999999 9999999999999999999999 


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCC
Q 010851          119 CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (499)
Q Consensus       119 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~  180 (499)
                      |+||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|+|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999  99999999999 99999999999999999985

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.5e-27  Score=217.36  Aligned_cols=160  Identities=21%  Similarity=0.151  Sum_probs=151.6

Q ss_pred             CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCH
Q 010851           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (499)
Q Consensus        43 ~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp  122 (499)
                      +|.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        28 ~n~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHH-TCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHc-CCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            567899999999999998 9999999999999999998  8899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChH
Q 010851          123 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR  202 (499)
Q Consensus       123 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~  202 (499)
                      ||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++++++.......
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence            999999999999999999999999  99999999999 999999999999999999999999999999999998888776


Q ss_pred             HHHHHH
Q 010851          203 AVIALW  208 (499)
Q Consensus       203 ~~~~l~  208 (499)
                      .+..+.
T Consensus       182 ~v~~Ll  187 (192)
T 2rfm_A          182 VIKIFT  187 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=1.1e-28  Score=224.01  Aligned_cols=159  Identities=14%  Similarity=0.048  Sum_probs=142.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHcCCcH----HHHHHHHHcCCCCCccCCCCCCCcHHH
Q 010851           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRPGGRGGTPLH   91 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~~g~~----~~v~~Ll~~ga~~~~~~~d~~g~TpL~   91 (499)
                      +.++||.|++.|+.+.++.++..+.  +.++ ..|+||||+|+.+ |+.    +++++||++|+++|.+  |..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~-~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN-NNDEARYKISMFLINKGADIKSR--TKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC-SCHHHHHHHHHHHHHTTCCSSCC--CTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHc-CCcchHHHHHHHHHHCCCCCCCC--CCCCCcHHH
Confidence            5688999999999999999999875  4455 7799999999987 654    5999999999999999  899999999


Q ss_pred             HHHHcCC------HHHHHHHHHCCCCCcccCCCCC-CHHHHHHHcC-----CHHHHHHHHH-cccccccccccccCCCHH
Q 010851           92 HAAKRGL------EPTVRLLLSCGANALVRNDDCH-TALGVARIKG-----HINVVRAIES-HICYFCGWLREFYGPSFL  158 (499)
Q Consensus        92 ~A~~~g~------~~~v~~Ll~~ga~~~~~d~~g~-tpL~~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~~~~g~t~L  158 (499)
                      +|+..++      .+++++|+++|++++.+|..|. ||||+|+..+     +.+++++|++ +|++++  .+|..|+|||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~TpL  158 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTAL  158 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCHH
Confidence            9999987      6889999999999999999999 9999999954     4579999999 999999  9999999999


Q ss_pred             HHHhhhcCCHHHHHHHHhcCCCCCC
Q 010851          159 EALAPQLMSRKIWVVVIPCGTANPS  183 (499)
Q Consensus       159 h~~A~~~~~~~~~~~Ll~~ga~~~~  183 (499)
                      | +|+..++.+++++|++...+.+.
T Consensus       159 ~-~A~~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          159 E-FVKRCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             H-HHHTTTCHHHHHHHHHHHHHHTC
T ss_pred             H-HHHHcCCHHHHHHHHHHHHHHhc
Confidence            9 99999999999999977654433

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=4.7e-27  Score=201.89  Aligned_cols=127  Identities=28%  Similarity=0.360  Sum_probs=119.5

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      ....|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~   86 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAV--DAIGFTPLHL   86 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHH
Confidence            466789999999999999999999999999999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  142 (499)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=9.6e-27  Score=207.67  Aligned_cols=133  Identities=26%  Similarity=0.345  Sum_probs=128.1

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+.+.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus        37 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g  113 (169)
T 2y1l_E           37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF-GHLEIVEVLLKNGADVNAN--DMEG  113 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCC
Confidence            567888999999999999999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  142 (499)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=4.1e-27  Score=208.11  Aligned_cols=134  Identities=28%  Similarity=0.341  Sum_probs=127.7

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+.+.+|..|.||||+|+. |+.+++++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus        28 ~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g  103 (162)
T 1ihb_A           28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIE--DNEG  103 (162)
T ss_dssp             CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCC
Confidence            56788899999999999999 999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGAN-ALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  144 (499)
                      +||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       104 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999998 599999999999999999999999999999985

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.4e-26  Score=195.22  Aligned_cols=126  Identities=34%  Similarity=0.514  Sum_probs=115.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~   95 (499)
                      +|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCcHHHHHHH
Confidence            588999999999999999999999999999999999999999988 8899999999999999988  7889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 010851           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (499)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  144 (499)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999998875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=2.4e-26  Score=204.42  Aligned_cols=154  Identities=19%  Similarity=0.088  Sum_probs=147.0

Q ss_pred             CCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHH
Q 010851           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (499)
Q Consensus        49 ~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~  128 (499)
                      .|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHT-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHC-CCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            689999999998 9999999999999999998  8899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHH
Q 010851          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (499)
Q Consensus       129 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  208 (499)
                      .|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++++++...+....+..+.
T Consensus        79 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999  89999999999 999999999999999999999999999999999999888877766655

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=8.7e-27  Score=209.94  Aligned_cols=137  Identities=21%  Similarity=0.205  Sum_probs=132.8

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g  105 (179)
T 3f6q_A           29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAV--NEHG  105 (179)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCC
Confidence            456788999999999999999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  146 (499)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++
T Consensus       106 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN  165 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            999999999999999999999999999999999999999999999999999999999998

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=8.8e-27  Score=205.12  Aligned_cols=144  Identities=19%  Similarity=0.160  Sum_probs=120.9

Q ss_pred             CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCC-
Q 010851           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT-  121 (499)
Q Consensus        43 ~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-  121 (499)
                      .+..+..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+ .|+.+++++|+++|++++.+|..|+| 
T Consensus         5 ~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~tt   80 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTR   80 (156)
T ss_dssp             -----CCSTTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCC
T ss_pred             ccCCCccchHHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            345678899999999998 9999999999999999998  889999999996 99999999999999999999999999 


Q ss_pred             HHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccC
Q 010851          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  193 (499)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~  193 (499)
                      |||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++..
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            9999999999999999999999999  99999999999 999999999999999999999888766655543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=8e-26  Score=198.14  Aligned_cols=149  Identities=21%  Similarity=0.208  Sum_probs=139.4

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHc
Q 010851           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK  129 (499)
Q Consensus        50 g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~  129 (499)
                      +.|+||+|+.. |+.+++++|+++|++++ .  +..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~-g~~~~v~~Ll~~g~~~~-~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARA-GQDDEVRILMANGAPFT-T--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHH-TCHHHHHHHHHHTCCCC-C--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHc-CCHHHHHHHHHcCCCCC-c--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            46899999998 99999999999999887 3  78999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHH
Q 010851          130 GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (499)
Q Consensus       130 g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~  205 (499)
                      |+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++++++...+....+.
T Consensus        78 ~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  150 (153)
T 1awc_B           78 GHANIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             TCHHHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ChHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999  89999999999 999999999999999999999999999999999888777655443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=8.6e-26  Score=198.38  Aligned_cols=130  Identities=25%  Similarity=0.369  Sum_probs=125.1

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +.+.+.+|..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus        26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g  101 (156)
T 1bd8_A           26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGTG  101 (156)
T ss_dssp             CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTTS
T ss_pred             CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCC
Confidence            34788899999999999 999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      +||||+|+..|+.+++++|++. ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          102 ALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999 99999999999999999999999999999975

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=7.8e-27  Score=200.65  Aligned_cols=127  Identities=28%  Similarity=0.332  Sum_probs=76.2

Q ss_pred             ccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHH
Q 010851           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (499)
Q Consensus        12 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~   91 (499)
                      .+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTT--GYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCc--CCCCCCHHH
Confidence            3455666666666666666666666666666666666666666666655 5666666666666666655  555666666


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+.
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            66666666666666666666666666666666666655555555555443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.8e-25  Score=187.18  Aligned_cols=126  Identities=32%  Similarity=0.465  Sum_probs=122.3

Q ss_pred             CCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHH
Q 010851           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (499)
Q Consensus        49 ~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~  128 (499)
                      +|+||||+|+.. |+.+++++|+++|++++.+  +..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            589999999998 9999999999999999998  8899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCC
Q 010851          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (499)
Q Consensus       129 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~  180 (499)
                      .|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999998  89999999999 99999999999999999985

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=2.3e-25  Score=197.65  Aligned_cols=149  Identities=21%  Similarity=0.199  Sum_probs=137.8

Q ss_pred             cCCCCChHHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHH
Q 010851           46 MDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (499)
Q Consensus        46 ~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~  124 (499)
                      .|.+|.|+||+|+.. |+.++++.|++. +.+++..  +..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus         4 ~~~~~~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKA-GDVETVKKLCTVQSVNCRDI--EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHH-TCHHHHHHHCCTTTTTCCCT--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcchhhHHHHHHHHh-CCHHHHHHHHHcCCCCcccc--ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence            567889999999998 999999999984 5566665  788999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccCh
Q 010851          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP  201 (499)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~  201 (499)
                      +|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++++++.. ...
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVN--VADLWKFTPLH-EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCH
T ss_pred             HHHHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CCh
Confidence            9999999999999999999999  89999999999 9999999999999999999999999999999999766 443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=2.2e-26  Score=217.47  Aligned_cols=148  Identities=21%  Similarity=0.196  Sum_probs=133.7

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      +..|.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~tpL~~A  110 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCA  110 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence            46789999999999999999999999999999999999999999998 9999999999999999999  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCC-CHHHHH--HHcCCHHHHHHHHHcccccccccc---------cccCCCHHHHH
Q 010851           94 AKRGLEPTVRLLLSCGANALVRNDDCH-TALGVA--RIKGHINVVRAIESHICYFCGWLR---------EFYGPSFLEAL  161 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpL~~A--~~~g~~~~v~~Ll~~g~~~~~~~~---------~~~g~t~Lh~~  161 (499)
                      +..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+++|++++  ..         +..+.++++ +
T Consensus       111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~--~~~~~~~~al~d~~~~~~~e-L  187 (239)
T 1ycs_B          111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYALWDYEPQNDDE-L  187 (239)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT--TTGGGEEEESSCBCCSSTTB-C
T ss_pred             HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc--ccccceEEEEeccCCCCCCc-c
Confidence            999999999999999999999998877 999999  78899999999999999887  43         556777777 5


Q ss_pred             hhhcCC
Q 010851          162 APQLMS  167 (499)
Q Consensus       162 A~~~~~  167 (499)
                      +...|.
T Consensus       188 a~~~G~  193 (239)
T 1ycs_B          188 PMKEGD  193 (239)
T ss_dssp             CBCSSC
T ss_pred             cccCCC
Confidence            655554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.7e-25  Score=192.04  Aligned_cols=127  Identities=20%  Similarity=0.236  Sum_probs=120.4

Q ss_pred             cCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHH
Q 010851           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV  125 (499)
Q Consensus        46 ~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~  125 (499)
                      ....|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        10 ~~~~~~t~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A           10 HGSDLGKKLLEAARA-GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             --CHHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccccccHHHHHHHHh-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence            345688999999998 9999999999999999998  8899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcC
Q 010851          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (499)
Q Consensus       126 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~g  178 (499)
                      |+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence            999999999999999999998  89999999999 999999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=5e-26  Score=195.57  Aligned_cols=133  Identities=22%  Similarity=0.263  Sum_probs=120.8

Q ss_pred             CCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCC
Q 010851           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC  119 (499)
Q Consensus        40 g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  119 (499)
                      |+|+ .+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g   76 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIK-GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN   76 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred             CCCC-CcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence            5677 7889999999999998 9999999999999999998  8899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCC
Q 010851          120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT  179 (499)
Q Consensus       120 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga  179 (499)
                      .||||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..+..+++++|.+.+.
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhcccccc
Confidence            999999999999999999999999999  99999999999 9999999999887776654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.5e-25  Score=202.73  Aligned_cols=142  Identities=21%  Similarity=0.178  Sum_probs=131.2

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      .+..|.||||+|+..|+.+++++|++ |++++.+|..|+||||+|+.. |+.+++++|+++|++++.++ +..|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHHH
Confidence            46789999999999999999999999 999999999999999999998 99999999999999999883 3889999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..+                   ....+.++|+ +|+..++.++++
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~-------------------~~~~~~~~l~-~a~~~~~~~i~~  176 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-------------------KTTPKGNPMQ-FGRRIGLEKVIN  176 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH-------------------HTCCCCSHHH-HHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc-------------------cCcccccHHH-HHHHcCHHHHHH
Confidence            99999999999999999999999999999999998742                   2345789999 999999999999


Q ss_pred             HHHhc
Q 010851          173 VVIPC  177 (499)
Q Consensus       173 ~Ll~~  177 (499)
                      +|.++
T Consensus       177 ~L~~~  181 (183)
T 3deo_A          177 VLEGQ  181 (183)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            99765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=1.6e-25  Score=212.35  Aligned_cols=145  Identities=21%  Similarity=0.181  Sum_probs=133.8

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      .+.+|.||||+|+..|+.++|++|++ |+++|.+|..|+||||+|+.. |+.+++++|+++|+++|.++ +..|+||||+
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~-~~~g~t~L~~  117 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSCCCHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHHH
Confidence            45689999999999999999999999 999999999999999999998 99999999999999999983 3789999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      |+..|+.++|++|+++|++++.+|..|.||||+|+..                   .....+.|||| +|+..++.++++
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-------------------~~~~~~~~~l~-~a~~~g~~~iv~  177 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-------------------LKTTPKGNPMQ-FGRRIGLEKVIN  177 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-------------------HTTCCCSSHHH-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-------------------HhccCCCCHHH-HHHHcChHHHHH
Confidence            9999999999999999999999999999999999862                   23457899999 999999999999


Q ss_pred             HHHhcCCC
Q 010851          173 VVIPCGTA  180 (499)
Q Consensus       173 ~Ll~~ga~  180 (499)
                      +|++++.+
T Consensus       178 ~L~~~~~~  185 (244)
T 3ui2_A          178 VLEGQVFE  185 (244)
T ss_dssp             HHHHHHEE
T ss_pred             HHHHhccc
Confidence            99987654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=2.1e-26  Score=208.95  Aligned_cols=135  Identities=20%  Similarity=0.210  Sum_probs=122.5

Q ss_pred             CccccC-CCchHHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCChHHHHHHHcCCc------HHHHHHHHHcCCCC
Q 010851            9 NQHQQR-QSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGL------INVAKTLIELGANI   77 (499)
Q Consensus         9 ~~~~~d-~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~------~~~v~~Ll~~ga~~   77 (499)
                      +.+.++ ..|+||||+|+..|+.    +++++||++|+++|.+|..|+||||+|+.. |+      .+++++|+++|+++
T Consensus        29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~~~~~~~~~~iv~~Ll~~Gadi  107 (186)
T 3t8k_A           29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-GGNDITGTTELCKIFLEKGADI  107 (186)
T ss_dssp             SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-CTTCHHHHHHHHHHHHHTTCCS
T ss_pred             CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCcchhhHHHHHHHHHHCCCCC
Confidence            345555 7799999999999985    599999999999999999999999999998 65      68999999999999


Q ss_pred             CccCCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 010851           78 NAYRPGGRGG-TPLHHAAKRG-----LEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (499)
Q Consensus        78 ~~~~~d~~g~-TpL~~A~~~g-----~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  146 (499)
                      |.+  |..|+ ||||+|+..+     +.+++++|++ +|++++.+|..|.||||+|++.|+.++|++|+++....+
T Consensus       108 n~~--d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          108 TAL--YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             SSC--BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             Ccc--CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999  88999 9999999954     4579999999 999999999999999999999999999999999876665

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=4.2e-26  Score=212.88  Aligned_cols=132  Identities=25%  Similarity=0.308  Sum_probs=97.6

Q ss_pred             ccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCCCCcHH
Q 010851           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPL   90 (499)
Q Consensus        12 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpL   90 (499)
                      .++.+|.||||+|+..|+.++|++|++.|++++.+|..|+||||+||.. |+.+++++|+++ |++++.+  |..|+|||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~g~~~~~~--d~~g~tpL  144 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GHKDIVEMLFTQPNIELNQQ--NKLGDTAL  144 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTSTTCCCCCC--CTTSCCHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHcCCCCCcccc--CCCCCCHH
Confidence            3456677888888888888888888888888888888888888888876 778888888877 7888877  77788888


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 010851           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (499)
Q Consensus        91 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  146 (499)
                      |+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++++.|++.++...
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            88888888888888888888888888888888888888888888888887777665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=2.6e-25  Score=187.41  Aligned_cols=112  Identities=29%  Similarity=0.334  Sum_probs=99.2

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      +..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHH
Confidence            56788999999999999999999999999999999999999999987 8899999999999999988  78899999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHH
Q 010851           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~  128 (499)
                      +..|+.+++++|+++|++++.+|..|.||||+|..
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            99999999999999999999999999999999843

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=6.7e-25  Score=214.50  Aligned_cols=143  Identities=20%  Similarity=0.162  Sum_probs=123.1

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCcc------cCCCCChHHHHHHHc--CCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEW------MDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~------~d~~g~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      ..+.++||.|+..|+.+.|+.|++.|++++.      .|..|+||||+|+..  .|+.+++++|+++|+++|.+  |..|
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~--d~~G  226 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--AADG  226 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC--CTTC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC--CCCC
Confidence            3456889999999999999999999999988      688999999999985  27899999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      +||||+|+..|+.++|++||++|++++.+|..|.||||+|+..|+.+++++|+++|++        .|.|||| +|+.+|
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g  297 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWV  297 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC-------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcC
Confidence            9999999999999999999999999999999999999999999999999999998865        4789999 888777


Q ss_pred             CH
Q 010851          167 SR  168 (499)
Q Consensus       167 ~~  168 (499)
                      +.
T Consensus       298 ~~  299 (301)
T 2b0o_E          298 IS  299 (301)
T ss_dssp             --
T ss_pred             Cc
Confidence            53

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=1.1e-26  Score=233.35  Aligned_cols=160  Identities=14%  Similarity=0.036  Sum_probs=136.6

Q ss_pred             ccCCCchHHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCC---CccCCCCC
Q 010851           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIELGANI---NAYRPGGR   85 (499)
Q Consensus        12 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~---~~~~~d~~   85 (499)
                      .++.+++||||+|+..|+.++|++|+++|+..   +..|..|.||||+||.+ |+.++|++|+++|+++   +..  +.+
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~--~~~  163 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQ--AEN  163 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHS--HHH
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccC--CCC
Confidence            35667889999999999999999999999832   23455788999999998 9999999999999863   332  222


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcc--cCCCCCCHHHHHH-HcCCHHHHHHHHHcccccccccccccCCCHHHHHh
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALV--RNDDCHTALGVAR-IKGHINVVRAIESHICYFCGWLREFYGPSFLEALA  162 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~tpL~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A  162 (499)
                       +||||+|+..|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.++|++|+++|+         .|.|||| +|
T Consensus       164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~-~A  232 (376)
T 2aja_A          164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEI-HE  232 (376)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHH-CT
T ss_pred             -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHH-HH
Confidence             8999999999999999999999999887  8889999999999 9999999999999774         2789999 99


Q ss_pred             hhcCCHHHHHHHHhcCCCCCCCC
Q 010851          163 PQLMSRKIWVVVIPCGTANPSKP  185 (499)
Q Consensus       163 ~~~~~~~~~~~Ll~~ga~~~~~~  185 (499)
                      +..|+.+++++|+++|++.+..+
T Consensus       233 a~~g~~evv~lL~~~ga~~~~~~  255 (376)
T 2aja_A          233 FEYGEKYVNPFIARHVNRLKEMH  255 (376)
T ss_dssp             TTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCccccccc
Confidence            99999999999999998765443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=8.8e-24  Score=211.54  Aligned_cols=148  Identities=21%  Similarity=0.297  Sum_probs=121.5

Q ss_pred             cCCCchHHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcH
Q 010851           13 QRQSKDELLYQWVIA-GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~-g~~~~v~~Ll~~g~~~~~~d--~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   89 (499)
                      .+..+.|+||+|+.. |++++|++||++|+++|..|  ..|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gadvn~~--d~~G~Tp  271 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGANVNQA--DSAGRGP  271 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            445678999999999 99999999999999999998  8999999999997 9999999999999999998  8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc-cccccccCCCHHHHHhhh
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC-GWLREFYGPSFLEALAPQ  164 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~~g~t~Lh~~A~~  164 (499)
                      ||+|+..|+.++|++||++|++++.+|..|.||||+|+..|+.+++++|+..+.... ....+..+.|+++ ++..
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~~  346 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFRD  346 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHHH
Confidence            999999999999999999999999999999999999999999999999998874322 1245677888888 4443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.8e-24  Score=201.80  Aligned_cols=135  Identities=17%  Similarity=0.134  Sum_probs=117.5

Q ss_pred             ccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCCHH
Q 010851           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTAL  123 (499)
Q Consensus        45 ~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL  123 (499)
                      ..+..|.||||+||.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.++|++|++. |++++.+|..|+|||
T Consensus        68 ~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHEEEESCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             cccccccccccccccc-CcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            3466789999999998 9999999999999999998  88999999999999999999999999 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCC
Q 010851          124 GVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP  185 (499)
Q Consensus       124 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~  185 (499)
                      |+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.++++.|+..|++....+
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC-------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhhhccc
Confidence            99999999999999999999999  99999999999 9999999999999999999876554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=6.4e-24  Score=178.80  Aligned_cols=113  Identities=22%  Similarity=0.225  Sum_probs=105.7

Q ss_pred             CCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHH
Q 010851           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (499)
Q Consensus        47 d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A  126 (499)
                      +..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHc-CCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            46789999999998 9999999999999999998  88999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc
Q 010851          127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus       127 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      +..|+.+++++|+++|++++  .+|..|+|||| +|...
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~  116 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATDNQ  116 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhCCH
Confidence            99999999999999999998  99999999999 77443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=2e-22  Score=194.72  Aligned_cols=125  Identities=19%  Similarity=0.222  Sum_probs=83.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCChHHHHHHHcC--CcHHHHHHHHHcCCCCCccCCCCCCCcH
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGGRGGTP   89 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------~~d~~g~TpLh~Aa~~~--g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   89 (499)
                      .++|+.|+..|+.+.++.+++.|++++      ..|..|+||||+|+..+  |+.+++++|+++|+++|.+  |..|+||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~--d~~g~Tp  208 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc--CCCCCCH
Confidence            456666777777777666666666633      33566667777776653  4566677777777766666  5666677


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  144 (499)
                      ||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777777777777777777777666666677777777777777777777666654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3.8e-25  Score=200.04  Aligned_cols=115  Identities=27%  Similarity=0.234  Sum_probs=108.3

Q ss_pred             CCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC-CCCCCHHHH
Q 010851           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGV  125 (499)
Q Consensus        47 d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~  125 (499)
                      +..|.||||+|+.. |+.+++++|++ |++++.+  |..|+||||+|+..|+.+++++|+++|++++.+| ..|+||||+
T Consensus        41 ~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHTT-TSCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHc-CCHHHHHHHHh-cCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            56889999999998 99999999999 9999998  8899999999999999999999999999999998 899999999


Q ss_pred             HHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCH
Q 010851          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (499)
Q Consensus       126 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~  168 (499)
                      |+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~  156 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILKT  156 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHHHHT
T ss_pred             HHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHhccC
Confidence            999999999999999999999  99999999999 88765443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=3.6e-22  Score=195.14  Aligned_cols=174  Identities=13%  Similarity=0.058  Sum_probs=141.3

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCC------CCc----------------------ccCCCCChHHHHHHHcCCcH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGA------SLE----------------------WMDKEGKTPLIVACMDSGLI   64 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~------~~~----------------------~~d~~g~TpLh~Aa~~~g~~   64 (499)
                      .|....+.|..+...|+. .++.+++...      .+.                      .....+.++||.|+.. |+.
T Consensus        87 lD~w~~~~l~~~~~~GN~-~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~~~~~~~~L~~A~~~-g~~  164 (301)
T 2b0o_E           87 LDLLGPSELLLALNMGNT-SFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICN-RDL  164 (301)
T ss_dssp             TSCCCHHHHHHHHHCCHH-HHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCCCC-CHHHHHHHHHT-TCH
T ss_pred             cCCCCHHHHHHHHHcCCH-HHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcccCchHHHHhhhhhc-cCH
Confidence            455667788888887776 3344444321      110                      0111234679999998 999


Q ss_pred             HHHHHHHHcCCCCCc------cCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHH
Q 010851           65 NVAKTLIELGANINA------YRPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV  135 (499)
Q Consensus        65 ~~v~~Ll~~ga~~~~------~~~d~~g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v  135 (499)
                      +.++.|++.|++++.      .  +..|+||||+|+..   |+.+++++|+++|++++.+|..|+||||+|+..|+.++|
T Consensus       165 ~~v~~ll~~g~d~~~~~~~~~~--~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v  242 (301)
T 2b0o_E          165 LSVLEAFANGQDFGQPLPGPDA--QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL  242 (301)
T ss_dssp             HHHHHHHHTTCCTTSCEECSSS--CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCCcccccCCCccc--CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999997      4  78999999999997   899999999999999999999999999999999999999


Q ss_pred             HHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCcccccc
Q 010851          136 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV  199 (499)
Q Consensus       136 ~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~  199 (499)
                      ++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++.      +.++++++...+
T Consensus       243 ~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~~------g~tpLh~A~~~g  297 (301)
T 2b0o_E          243 KLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAGT------FAFPLHVDYSWV  297 (301)
T ss_dssp             HHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHT------TSSCCC------
T ss_pred             HHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCCC------CCChhHHHHhcC
Confidence            99999999999  99999999999 999999999999999999873      567777766443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=9e-22  Score=190.08  Aligned_cols=167  Identities=12%  Similarity=-0.013  Sum_probs=140.9

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHHcCC-----CCcc--------------------------cCCCCChHHHHHHH
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGA-----SLEW--------------------------MDKEGKTPLIVACM   59 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----~~~~--------------------------~d~~g~TpLh~Aa~   59 (499)
                      -..|..+.+.|+++...|+..+.+++...-.     .+..                          .+....++|+.|+.
T Consensus        60 ~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~  139 (278)
T 1dcq_A           60 LTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVK  139 (278)
T ss_dssp             TTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhh
Confidence            3468889999999999999776665532110     0000                          00112368999998


Q ss_pred             cCCcHHHHHHHHHcCCCCCcc----CCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCH
Q 010851           60 DSGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI  132 (499)
Q Consensus        60 ~~g~~~~v~~Ll~~ga~~~~~----~~d~~g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~  132 (499)
                      . |+.+.++.|++.|++++..    ..|..|+||||+|+..   |+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus       140 ~-~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          140 T-RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             T-TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             h-cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence            7 9999999999999995532    1267899999999999   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCC
Q 010851          133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (499)
Q Consensus       133 ~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~  181 (499)
                      ++|++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++.
T Consensus       219 ~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          219 ECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999  99999999999 999999999999999999864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.7e-22  Score=160.03  Aligned_cols=91  Identities=38%  Similarity=0.558  Sum_probs=50.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHc
Q 010851           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~   96 (499)
                      |+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARN   78 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHc
Confidence            45555555555555555555555555555555555555555554 5555555555555555555  45555555555555


Q ss_pred             CCHHHHHHHHHCCC
Q 010851           97 GLEPTVRLLLSCGA  110 (499)
Q Consensus        97 g~~~~v~~Ll~~ga  110 (499)
                      |+.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            55555555555554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=5.7e-22  Score=158.14  Aligned_cols=93  Identities=39%  Similarity=0.608  Sum_probs=84.3

Q ss_pred             CCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHH
Q 010851           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (499)
Q Consensus        49 ~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~  128 (499)
                      +|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            488999999988 8899999999999999988  8899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcccc
Q 010851          129 KGHINVVRAIESHICY  144 (499)
Q Consensus       129 ~g~~~~v~~Ll~~g~~  144 (499)
                      .|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999998874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=1.6e-22  Score=168.05  Aligned_cols=107  Identities=30%  Similarity=0.410  Sum_probs=68.5

Q ss_pred             cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHH
Q 010851           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (499)
Q Consensus        13 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~   92 (499)
                      +|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~tpl~~   81 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNAR--SKDGNTPEHL   81 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCC--CTTCCCTTHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCCHHHH
Confidence            456666666666666666666666666666666666666666666655 6666666666666666665  5566666666


Q ss_pred             HHHcCCHHHHHHHHHCCCCCcccCCCCCCH
Q 010851           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (499)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp  122 (499)
                      |+..|+.+++++|+++|++++.++..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            666666666666666666666666666555

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=4.6e-23  Score=207.04  Aligned_cols=174  Identities=11%  Similarity=0.034  Sum_probs=142.9

Q ss_pred             CchHHHHHHHH-cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCcc-CCCCCCCcHHHHH
Q 010851           16 SKDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHA   93 (499)
Q Consensus        16 ~g~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~-~~d~~g~TpL~~A   93 (499)
                      .+.+.+++|.. .++.+++++|+++|.+.       .||||+||.. |+.+++++|+++|+..... +.+..|.||||+|
T Consensus        64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~-G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A  135 (376)
T 2aja_A           64 RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA  135 (376)
T ss_dssp             HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHH-CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHc-CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH
Confidence            35678888877 58889999999987654       4999999998 9999999999999832111 1145688999999


Q ss_pred             HHcCCHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHccccccccc--ccccCCCHHHHHhh-hcCC
Q 010851           94 AKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL--REFYGPSFLEALAP-QLMS  167 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~~~g~t~Lh~~A~-~~~~  167 (499)
                      +..|+.++|++|+++|+++   +..+.+ .||||+|+..|+.++|++|+++|++++  .  +|..|+|||| +|+ ..|+
T Consensus       136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~  211 (376)
T 2aja_A          136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGH  211 (376)
T ss_dssp             HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCC
T ss_pred             HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCC
Confidence            9999999999999999862   333333 899999999999999999999999987  5  8899999999 999 9999


Q ss_pred             HHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHH
Q 010851          168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (499)
Q Consensus       168 ~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  208 (499)
                      .+++++|+++|+       .+.++++.+...+....+..+.
T Consensus       212 ~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~  245 (376)
T 2aja_A          212 HNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIA  245 (376)
T ss_dssp             HHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHH
T ss_pred             HHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHH
Confidence            999999999875       3788898888887776555444

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=7.6e-22  Score=163.88  Aligned_cols=109  Identities=34%  Similarity=0.499  Sum_probs=102.2

Q ss_pred             ccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHH
Q 010851           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (499)
Q Consensus        45 ~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~  124 (499)
                      .+|.+|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHH-TCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            5789999999999998 9999999999999999998  889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcccccccccccccCCCHH
Q 010851          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFL  158 (499)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  158 (499)
                      +|+..|+.+++++|+++|++++  .++..|.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence            9999999999999999999999  8898898874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=3.8e-21  Score=192.41  Aligned_cols=131  Identities=19%  Similarity=0.141  Sum_probs=121.2

Q ss_pred             CCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHH
Q 010851           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (499)
Q Consensus        47 d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A  126 (499)
                      +..+.|+||+|+...|+.+++++|+++|+++|..+.+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34567899999975488999999999999999984338999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCC
Q 010851          127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (499)
Q Consensus       127 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~  180 (499)
                      +..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+..+..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred             HHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999  99999999999 99999999999999988854

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=2.1e-21  Score=183.90  Aligned_cols=139  Identities=24%  Similarity=0.144  Sum_probs=120.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~   95 (499)
                      .+.+++++++..|+.+.++.+...+.+   .+..|.||||+|+.. |+.+++++|++ |+++|.+  |..|+||||+|+.
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~   86 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAG   86 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHH---HHHHHHHHHHHHHTT-TCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHH
T ss_pred             CCccHHHHHHHcCCCcccccccccccc---cccCCCCHHHHHHHc-CCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHH
Confidence            445566666666666655554444433   345789999999987 99999999999 9999998  8899999999999


Q ss_pred             cCCHHHHHHHHHCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhh
Q 010851           96 RGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (499)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~  164 (499)
                      .|+.++|++|+++|++++.++ ..|+||||+|+..|+.++|++|+++|++++  .+|..|+|||| +|+.
T Consensus        87 ~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~~  153 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LARE  153 (244)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHH
T ss_pred             CCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHHH
Confidence            999999999999999999998 889999999999999999999999999999  99999999999 7764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=4e-19  Score=146.32  Aligned_cols=92  Identities=30%  Similarity=0.414  Sum_probs=63.1

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHH
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL   90 (499)
                      ...|.+|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+|||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~tpl   94 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQ--DKFGKTAF   94 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccCCCcHH
Confidence            44566677777777777777777777777777777777777777777765 6677777777777777766  66677777


Q ss_pred             HHHHHcCCHHHHHHH
Q 010851           91 HHAAKRGLEPTVRLL  105 (499)
Q Consensus        91 ~~A~~~g~~~~v~~L  105 (499)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            777777777777665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=7.9e-19  Score=144.53  Aligned_cols=93  Identities=27%  Similarity=0.369  Sum_probs=82.7

Q ss_pred             CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCH
Q 010851           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (499)
Q Consensus        43 ~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp  122 (499)
                      +...|.+|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus        17 ~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARA-GQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA   93 (110)
T ss_dssp             -----CCHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccccCCccchHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence            345678899999999998 8999999999999999988  8899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 010851          123 LGVARIKGHINVVRAI  138 (499)
Q Consensus       123 L~~A~~~g~~~~v~~L  138 (499)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999887

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.41  E-value=7.1e-14  Score=102.15  Aligned_cols=56  Identities=34%  Similarity=0.823  Sum_probs=51.0

Q ss_pred             CccccccccccCCceEEe--CCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010851          444 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  499 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  499 (499)
                      ++..|.||++.+.+++++  ||||.++|..|+.+++.....||+||++|..++++|..
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~   64 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP   64 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence            346999999999999998  99999669999999998777899999999999999963

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.41  E-value=7.6e-14  Score=101.64  Aligned_cols=55  Identities=27%  Similarity=0.817  Sum_probs=50.0

Q ss_pred             ccccccccccCCceEEe--CCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010851          445 SSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  499 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  499 (499)
                      ...|.||++.+.+++++  ||||.++|..|+.+++...+.||+||++|..+++||.+
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s   63 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA   63 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence            46999999999999888  99999669999999997777899999999999999974

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=5.9e-13  Score=98.34  Aligned_cols=53  Identities=28%  Similarity=0.734  Sum_probs=47.0

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  498 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  498 (499)
                      ..+...|.||++.+.+++++||||.++|..|+..+.    .||+||.+|..+++||.
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence            344579999999999999999999955999999765    49999999999999985

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.17  E-value=5.9e-12  Score=95.98  Aligned_cols=51  Identities=33%  Similarity=0.978  Sum_probs=46.2

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  498 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  498 (499)
                      +...|.||++.+.+++++||||.++|..|+..++.    ||+||.+|..++++|.
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~----CP~Cr~~i~~~~~i~~   67 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVYL   67 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSB----CTTTCCBCCEEEECBC
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCc----CCCCCchhhCeEEEEe
Confidence            34689999999999999999999559999998864    9999999999999985

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.12  E-value=1.5e-11  Score=92.61  Aligned_cols=52  Identities=29%  Similarity=0.750  Sum_probs=45.9

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  499 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  499 (499)
                      +...|.||++.+.+++++||||..+|..|+..+.    .||+||.+|...+++|.+
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S   74 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKILMS   74 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS----BCTTTCCBCSEEEECBC-
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc----cCCCcCcCccCcEEEeeC
Confidence            4468999999999999999999933999999884    599999999999999864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=2.8e-11  Score=91.49  Aligned_cols=52  Identities=29%  Similarity=0.783  Sum_probs=45.7

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  499 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  499 (499)
                      +...|.||++.+.+++++||||.++|..|+.++.    .||+||.+|...++||.+
T Consensus        24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S   75 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFMS   75 (75)
T ss_dssp             HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS----BCTTTCCBCCCCCBCCCC
T ss_pred             CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCC----CCccCCceecCcEEEecC
Confidence            3468999999999999999999933999998764    499999999999999964

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1e-10  Score=87.45  Aligned_cols=49  Identities=27%  Similarity=0.670  Sum_probs=43.9

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      .+...|.||++.+.+++.+||||.| |..|+..|......||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence            3446999999999999999999999 999999988777889999999863

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.3e-10  Score=86.57  Aligned_cols=54  Identities=22%  Similarity=0.691  Sum_probs=46.7

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEee
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  497 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~  497 (499)
                      ..+...|.||++.+.+ +.+||||.| |..|+.+|......||+||..+.....+|
T Consensus        12 ~~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   65 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS   65 (70)
T ss_dssp             CCCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred             CCCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence            3445799999999999 888999999 99999999887789999999998766554

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.5e-10  Score=87.69  Aligned_cols=50  Identities=24%  Similarity=0.472  Sum_probs=44.8

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ......|+||++.+.+++.++|||.| |..|+..|......||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG   61 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred             CCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence            34457999999999999999999999 999999998877899999999864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.5e-10  Score=85.54  Aligned_cols=52  Identities=23%  Similarity=0.507  Sum_probs=45.6

Q ss_pred             CCCCccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccce
Q 010851          441 DDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  493 (499)
Q Consensus       441 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  493 (499)
                      +..+...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence            345567999999999999987 999999 9999999987778999999998753

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.97  E-value=1.3e-10  Score=86.78  Aligned_cols=53  Identities=36%  Similarity=0.803  Sum_probs=45.6

Q ss_pred             CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010851          444 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  497 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~  497 (499)
                      +...|+||++...++       +.++|||.| |..|+.+|...+..||+||..+.  .+.++|
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence            346999999998776       888999999 99999999888889999999986  455665

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=7e-10  Score=83.31  Aligned_cols=49  Identities=27%  Similarity=0.739  Sum_probs=42.7

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhc---cCCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~Cp~Cr~~i~~  492 (499)
                      .+...|+||++.+.+++.++|||.| |..|+..|..   ....||+||..+..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            4457999999999999999999999 9999999986   24589999998863

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.96  E-value=2.1e-10  Score=83.79  Aligned_cols=52  Identities=37%  Similarity=0.797  Sum_probs=45.4

Q ss_pred             ccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010851          445 SSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  497 (499)
Q Consensus       445 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~  497 (499)
                      ...|+||++...++       +.++|||.| |..|+.+|...+..||+||..+.  +.+++|
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence            46899999988765       788999999 99999999887889999999996  577776

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.95  E-value=7e-10  Score=82.30  Aligned_cols=53  Identities=23%  Similarity=0.621  Sum_probs=44.1

Q ss_pred             CCCccccccccccC---CceEEeCCCCchhhHHhHHHHhccCCccccccccccceeE
Q 010851          442 DGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  495 (499)
Q Consensus       442 ~~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  495 (499)
                      ......|.||++.+   ..++.+||||.| |..|+..|...+..||+||..+...+.
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            34557999998876   456788999999 999999998887889999999876543

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=3.4e-10  Score=84.02  Aligned_cols=49  Identities=37%  Similarity=0.826  Sum_probs=42.6

Q ss_pred             CCccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      .+...|.||++.+.++       +.++|||.| |..|+..|...+..||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence            4457999999988776       888999999 999999998877899999998864

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.94  E-value=3.1e-10  Score=83.96  Aligned_cols=52  Identities=27%  Similarity=0.758  Sum_probs=45.6

Q ss_pred             ccccccccccCCce-EEeCCCCchhhHHhHHHHhccCCccccccccccceeEee
Q 010851          445 SSSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  497 (499)
Q Consensus       445 ~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~  497 (499)
                      ...|+||++...++ +.+||||.| |..|+.+|...+..||+||.++...++.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred             CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence            36899999999885 788999999 99999999887789999999998776554

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.94  E-value=3.8e-10  Score=96.12  Aligned_cols=48  Identities=33%  Similarity=0.789  Sum_probs=44.0

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccccee
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  494 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  494 (499)
                      ..|+||++.+.+++.+||||.| |..|+..|...+..||+||.+|....
T Consensus        54 ~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           54 LQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             SBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             CCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            5799999999999999999999 99999999988889999999997543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.89  E-value=9.1e-10  Score=82.87  Aligned_cols=49  Identities=22%  Similarity=0.613  Sum_probs=42.9

Q ss_pred             CCCccccccccccCCceEEeC-CCCchhhHHhHHHHhccC--Ccccccccccc
Q 010851          442 DGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  491 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~  491 (499)
                      ..+...|+||++.+.+++.+| |||.| |..|+..|....  ..||+||+.+.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           12 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             SCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            345579999999999999999 99999 999999998754  58999999754

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=7e-10  Score=83.56  Aligned_cols=54  Identities=24%  Similarity=0.476  Sum_probs=44.0

Q ss_pred             CCCccccccccccCCc---eEEeCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010851          442 DGSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  496 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~  496 (499)
                      ......|.||++.+..   .+.+||||.| |..|+.+|...+..||+||.++....++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence            4455799999998743   4455999999 9999999988878999999999765543

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.87  E-value=7.8e-10  Score=83.70  Aligned_cols=55  Identities=27%  Similarity=0.655  Sum_probs=43.2

Q ss_pred             CCCccccccccccC--CceEEeC--CCCchhhHHhHHHHhcc-CCccccccccccceeEee
Q 010851          442 DGSSSSCVICWEAP--VEGACVP--CGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRLY  497 (499)
Q Consensus       442 ~~~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~~~  497 (499)
                      .++...|+||++..  .+++++|  |||.| |..|+.+++.. ...||.||+++.....+|
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~   67 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY   67 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred             cccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence            34557999999977  4556666  99999 99999998754 458999999997654444

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.87  E-value=8.5e-10  Score=77.81  Aligned_cols=46  Identities=33%  Similarity=0.738  Sum_probs=40.8

Q ss_pred             ccccccccccCCc----eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          445 SSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ...|.||++...+    ++.++|||.| |..|+.+|......||+||..+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence            3689999998865    7888999999 99999999887788999999875

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.86  E-value=1.9e-09  Score=83.53  Aligned_cols=48  Identities=33%  Similarity=0.737  Sum_probs=42.7

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc------CCcccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~Cp~Cr~~i~  491 (499)
                      .+...|+||++.+.+++.++|||.| |..|+..+...      ...||+||..+.
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            3447999999999999999999999 99999998776      568999999986

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.86  E-value=1.4e-09  Score=85.50  Aligned_cols=49  Identities=35%  Similarity=0.719  Sum_probs=42.8

Q ss_pred             CCccccccccccCCc---eEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          443 GSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ++...|.||++.+..   ++.+||||.| |..|+..|...+..||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence            445799999998876   7788999999 999999999888899999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=1.8e-09  Score=84.22  Aligned_cols=49  Identities=31%  Similarity=0.651  Sum_probs=42.7

Q ss_pred             CCCccccccccccCCc----eEEeCCCCchhhHHhHHHHhccC---Ccccccccccc
Q 010851          442 DGSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  491 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i~  491 (499)
                      ..+...|+||++.+.+    ++.++|||.| |..|+..|....   ..||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            3445799999999998    9999999999 999999998764   68999999875

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.86  E-value=1.5e-09  Score=85.58  Aligned_cols=49  Identities=22%  Similarity=0.624  Sum_probs=42.6

Q ss_pred             CCCCccccccccccCCceEEeC-CCCchhhHHhHHHHhccC--Cccccccccc
Q 010851          441 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKI  490 (499)
Q Consensus       441 ~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i  490 (499)
                      ...+...|+||++.+.+++.+| |||.| |..|+..+....  ..||+||..+
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcC
Confidence            3455579999999999999999 99999 999999987543  4899999987

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.86  E-value=1.1e-09  Score=83.34  Aligned_cols=50  Identities=30%  Similarity=0.653  Sum_probs=41.6

Q ss_pred             CCCccccccccccCC---ceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          442 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ..+...|.||++.+.   ..+.++|||.| |..|+.+|...+..||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence            344579999988764   34667999999 999999998877899999999864

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.2e-09  Score=80.21  Aligned_cols=49  Identities=22%  Similarity=0.563  Sum_probs=42.7

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhc-cCCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~  492 (499)
                      .+...|+||++...+++.++|||.| |..|+.+|.. ....||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            3457999999999999999999999 9999999984 35689999998864

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.83  E-value=1.2e-09  Score=77.00  Aligned_cols=46  Identities=24%  Similarity=0.688  Sum_probs=40.4

Q ss_pred             ccccccccccCCc---eEEeC-CCCchhhHHhHHHHhccCCcccccccccc
Q 010851          445 SSSCVICWEAPVE---GACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ...|.||++...+   ++.+| |||.| |..|+.+|...+..||+||+.+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence            4689999999877   67777 99999 99999999888889999998763

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=4.6e-09  Score=76.28  Aligned_cols=44  Identities=27%  Similarity=0.725  Sum_probs=38.4

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc---CCccccc
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVC  486 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~Cp~C  486 (499)
                      ..+...|+||++.+.+++.++|||.| |..|+.+|...   ...||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence            34457999999999999999999999 99999999873   4579998

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.81  E-value=7.4e-10  Score=84.60  Aligned_cols=49  Identities=31%  Similarity=0.725  Sum_probs=42.7

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-------CCcccccccccc
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-------KGDCPVCRTKIN  491 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~Cp~Cr~~i~  491 (499)
                      ..+...|+||++.+.+++.+||||.| |..|+..|...       ...||+||..+.
T Consensus         9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            34457999999999999999999999 99999988765       458999999985

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.81  E-value=2.9e-09  Score=81.00  Aligned_cols=48  Identities=17%  Similarity=0.203  Sum_probs=43.4

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  491 (499)
                      .+...|+||++...+++.++|||.| |..|+.+|... ...||+||.++.
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             cccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCC
Confidence            3457999999999999999999999 99999999876 668999999985

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=2e-09  Score=83.33  Aligned_cols=48  Identities=33%  Similarity=0.794  Sum_probs=42.6

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc------CCcccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~Cp~Cr~~i~  491 (499)
                      .+...|+||++.+.+++.+||||.| |..|+..+...      ...||+||..+.
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            4457999999999999999999999 99999998765      568999999986

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.6e-09  Score=81.77  Aligned_cols=48  Identities=23%  Similarity=0.605  Sum_probs=41.2

Q ss_pred             CccccccccccCCce---EEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          444 SSSSCVICWEAPVEG---ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      +...|.||++.+...   +.+||||.| |..|+.+|...+..||+||+.+..
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence            446999999887654   778999999 999999998878899999998753

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.77  E-value=2.2e-09  Score=85.83  Aligned_cols=47  Identities=26%  Similarity=0.728  Sum_probs=42.8

Q ss_pred             CccccccccccCCceEE-eCCCCchhhHHhHHHHhccC-Ccccccccccc
Q 010851          444 SSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN  491 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~  491 (499)
                      +...|+||++.+.+++. ++|||.| |..|+..|.... ..||+||.++.
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence            44699999999999999 9999999 999999998876 68999999985

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=6.5e-09  Score=74.08  Aligned_cols=43  Identities=33%  Similarity=0.774  Sum_probs=37.3

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhc---cCCccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVC  486 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~Cp~C  486 (499)
                      .+...|+||++...+++.++|||.| |..|+.+|..   ....||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence            4457999999999999999999999 9999999954   34589998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.71  E-value=6.1e-09  Score=86.89  Aligned_cols=47  Identities=26%  Similarity=0.627  Sum_probs=42.0

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  492 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  492 (499)
                      ...|+||++.+.+++.+||||.| |..|+..|.... ..||+||.++..
T Consensus        52 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence            36899999999999999999999 999999988753 489999999865

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.71  E-value=5.5e-09  Score=83.44  Aligned_cols=48  Identities=25%  Similarity=0.620  Sum_probs=43.4

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          444 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      +...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence            346999999999999988 899999 999999999877899999998863

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.71  E-value=8e-09  Score=83.92  Aligned_cols=49  Identities=20%  Similarity=0.636  Sum_probs=44.2

Q ss_pred             CCccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      .+...|+||++.+.+++.+ +|||.| |..|+..|......||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence            3446999999999999998 999999 999999998877899999999874

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.70  E-value=4.6e-09  Score=76.79  Aligned_cols=46  Identities=28%  Similarity=0.680  Sum_probs=37.6

Q ss_pred             ccccccccc-cCCce----EEeCCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010851          445 SSSCVICWE-APVEG----ACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  491 (499)
                      +..|+||++ ...++    +.++|||.| |..|+.++... ...||+||.++.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCccc
Confidence            368999999 55444    567999999 99999999554 457999999986

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.69  E-value=1.6e-08  Score=78.05  Aligned_cols=50  Identities=10%  Similarity=0.013  Sum_probs=44.9

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  492 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  492 (499)
                      ..+...|+||++...++|.++|||.| |..|+.+++.....||+||.++..
T Consensus        11 ~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CchheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence            34557999999999999999999999 999999999877789999998863

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.67  E-value=4.2e-09  Score=102.85  Aligned_cols=52  Identities=29%  Similarity=0.876  Sum_probs=45.4

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  499 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  499 (499)
                      +...|+||++.+.+++++||||.++|..|+..+.    .||+||.+|...++||.+
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~s  345 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFLS  345 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC--
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeecC
Confidence            3469999999999999999999944999999884    499999999999999953

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.67  E-value=1.9e-09  Score=76.18  Aligned_cols=45  Identities=24%  Similarity=0.540  Sum_probs=38.7

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      .+...|.||++.+.+++.+||||.| |..|+..+   ...||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcc-cHHHHccC---CCCCCcCCcEee
Confidence            3456899999999999999999999 99998763   347999999875

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.67  E-value=1.3e-08  Score=99.79  Aligned_cols=50  Identities=34%  Similarity=0.792  Sum_probs=45.0

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhc-cCCccccccccccceeEe
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL  496 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~  496 (499)
                      ..|+||++...+++.+||||.| |..|+..|.. ....||+||.++.....+
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            6999999999999999999999 9999999877 467899999999876555

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.65  E-value=4.6e-09  Score=86.45  Aligned_cols=49  Identities=35%  Similarity=0.761  Sum_probs=42.7

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      .+...|+||++.+.+++.++|||.| |..|+..|... ...||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3446999999999999999999999 99999998865 5589999998853

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.63  E-value=4.5e-08  Score=77.56  Aligned_cols=48  Identities=10%  Similarity=0.005  Sum_probs=44.0

Q ss_pred             CCccccccccccCCceEEeCCC-CchhhHHhHHHHhccCCcccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      .+...|+||++...++|.++|| |.| |..|+.+++.....||+||.++.
T Consensus        20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~   68 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCC
Confidence            4457999999999999999999 999 99999999987778999999886

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.63  E-value=1.5e-08  Score=87.27  Aligned_cols=48  Identities=31%  Similarity=0.630  Sum_probs=42.7

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCC-ccccccccccc
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~  492 (499)
                      +...|+||++.+.+++.+||||.| |..|+..+..... .||+||..+..
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence            346899999999999999999999 9999999987643 79999999874

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.62  E-value=6.4e-08  Score=77.00  Aligned_cols=49  Identities=10%  Similarity=0.018  Sum_probs=44.7

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ..+...|+||++...++|.+||||.| |..|+.+++.....||+||.++.
T Consensus        26 ~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~   74 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLT   74 (100)
T ss_dssp             CSTTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCC
T ss_pred             CcHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCC
Confidence            34567999999999999999999999 99999999987778999999886

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.60  E-value=2.5e-08  Score=82.32  Aligned_cols=49  Identities=31%  Similarity=0.602  Sum_probs=43.2

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  492 (499)
                      .+...|+||++...+++.++|||.| |..|+..|.... ..||+||.++..
T Consensus        16 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            4457999999999999999999999 999999987654 389999999864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.59  E-value=1.9e-08  Score=82.52  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=38.0

Q ss_pred             cccccccccCCce------------------EEeCCCCchhhHHhHHHHhc-----cCCccccccccccc
Q 010851          446 SSCVICWEAPVEG------------------ACVPCGHMAGCMSCLSEIKA-----KKGDCPVCRTKINQ  492 (499)
Q Consensus       446 ~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~-----~~~~Cp~Cr~~i~~  492 (499)
                      ..|+||++.+...                  ..++|+|.| |..|+..|..     ....||+||..+..
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            5899999987543                  378999999 9999999983     35589999998754

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.58  E-value=1.7e-08  Score=88.67  Aligned_cols=48  Identities=27%  Similarity=0.619  Sum_probs=42.7

Q ss_pred             CCccccccccccCCceEEe-CCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  491 (499)
                      .+...|+||++.+.+++.+ +|||.| |..|+..|... ...||+||..+.
T Consensus        52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence            3446999999999999988 999999 99999999876 668999999984

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=2.9e-08  Score=75.89  Aligned_cols=46  Identities=22%  Similarity=0.545  Sum_probs=38.1

Q ss_pred             ccccccccccCCc--------------eEEe-CCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          445 SSSCVICWEAPVE--------------GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ...|.||++.+.+              ++.+ +|||.| |..|+.+|...+..||+||+++.
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence            3578888887755              4444 599999 99999999888889999999875

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.56  E-value=2.8e-08  Score=84.53  Aligned_cols=47  Identities=23%  Similarity=0.511  Sum_probs=41.7

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKI  490 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i  490 (499)
                      .+...|+||++.+.+++.++|||.| |..|+.+|.... ..||+||.++
T Consensus        29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence            4457999999999999999999999 999999998754 3899999975

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.55  E-value=1.6e-08  Score=82.73  Aligned_cols=46  Identities=30%  Similarity=0.768  Sum_probs=41.1

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccC---Ccccccccccc
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i~  491 (499)
                      ...|+||++.+.+++.+||||.| |..|+..+....   ..||+||..+.
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            35899999999999999999999 999999988754   37999999886

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.53  E-value=2.2e-08  Score=82.46  Aligned_cols=48  Identities=27%  Similarity=0.529  Sum_probs=43.1

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      +...|+||++.+.+++.++|||.| |..|+..|... ...||+||.++..
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            446999999999999999999999 99999999876 5689999999863

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.49  E-value=4.7e-08  Score=82.48  Aligned_cols=46  Identities=39%  Similarity=0.865  Sum_probs=42.1

Q ss_pred             ccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          445 SSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ...|+||++.+.++       +.++|||.| |..|+.+|...+..||+||..+.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~   59 (133)
T 4ap4_A            7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKIN   59 (133)
T ss_dssp             SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCT
T ss_pred             CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCc
Confidence            36899999998877       899999999 99999999888889999999986

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.44  E-value=6.4e-08  Score=81.65  Aligned_cols=53  Identities=36%  Similarity=0.803  Sum_probs=45.9

Q ss_pred             CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010851          444 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  497 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~  497 (499)
                      +...|.||++...++       +..+|||.| |..|+.+|....+.||+||..+.  +.+++|
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence            346899999988765       888999999 99999999988889999999996  566776

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.37  E-value=2.3e-07  Score=74.42  Aligned_cols=46  Identities=22%  Similarity=0.474  Sum_probs=38.8

Q ss_pred             ccccccccccCCc------------------eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          445 SSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ...|.||++.+..                  .+.++|+|.| +..|+..|...+..||+||+.+.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence            3689999987654                  3667999999 99999999887889999999853

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.37  E-value=4.4e-08  Score=80.72  Aligned_cols=45  Identities=31%  Similarity=0.693  Sum_probs=40.6

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          444 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      +...|+||++.+.+++.+ +|||.| |..|+..+..  ..||+||..+.
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence            447999999999999999 999999 9999999875  57999999885

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.26  E-value=4.4e-07  Score=86.91  Aligned_cols=47  Identities=21%  Similarity=0.173  Sum_probs=42.0

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCC-cccccccccc
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKIN  491 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~  491 (499)
                      ....|+||++...++|.+||||.| |..|+.++..... .||+||.++.
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCc
Confidence            346999999999999999999999 9999999987643 5999999986

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.24  E-value=4.9e-07  Score=79.70  Aligned_cols=49  Identities=31%  Similarity=0.597  Sum_probs=43.0

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      .+...|+||++.+.+++.++|||.| |..|+.+|... ...||+||..+..
T Consensus        16 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence            4457999999999999999999999 99999998765 3489999999864

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=6.3e-07  Score=70.48  Aligned_cols=45  Identities=22%  Similarity=0.399  Sum_probs=39.1

Q ss_pred             CccccccccccCCceEEeC-CCCchhhHHhHHHHhccC------Ccccc--cccc
Q 010851          444 SSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK------GDCPV--CRTK  489 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~------~~Cp~--Cr~~  489 (499)
                      ....|+||++.+.++|.++ |||.| |..|+..|+...      ..||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            3469999999999999996 99999 999999998642      48999  9855

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.19  E-value=9e-07  Score=77.59  Aligned_cols=48  Identities=21%  Similarity=0.123  Sum_probs=42.6

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  492 (499)
                      +...|+||++...++|.+||||.| |..|+..+.... ..||+||.++..
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             HhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            447999999999999999999999 999999998763 369999998863

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.12  E-value=4e-07  Score=74.06  Aligned_cols=46  Identities=22%  Similarity=0.466  Sum_probs=0.4

Q ss_pred             ccccccccccCCce------------------EEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          445 SSSCVICWEAPVEG------------------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ...|.||++.+.+.                  +..+|+|.| |..|+..|...+..||+||+++.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence            35899999887642                  235899999 99999999887788999999853

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.94  E-value=6.9e-06  Score=75.57  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=41.1

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccC--Ccccc--cccccc
Q 010851          444 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPV--CRTKIN  491 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~Cp~--Cr~~i~  491 (499)
                      ....|+||++.+.++|.. .|||.| |..|+..++...  ..||+  ||..+.
T Consensus       180 ~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          180 IELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            446999999999999985 999999 999999998753  47999  999875

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.91  E-value=5.2e-06  Score=62.79  Aligned_cols=48  Identities=23%  Similarity=0.500  Sum_probs=38.7

Q ss_pred             CccccccccccC--CceEEeCCC-----CchhhHHhHHHHhccC--Cccccccccccc
Q 010851          444 SSSSCVICWEAP--VEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCRTKINQ  492 (499)
Q Consensus       444 ~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~  492 (499)
                      +...|.||++..  .+.+++||.     |.| ...|+.+|...+  ..||+||..+.-
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            346899999765  345678996     999 999999998764  489999998853

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.82  E-value=9.6e-06  Score=57.84  Aligned_cols=51  Identities=14%  Similarity=0.256  Sum_probs=44.7

Q ss_pred             cccccccccCCceEEe-CCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010851          446 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  497 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~  497 (499)
                      ..|+||++...++|.. +|||.| |+.|+.+|....+.||+++.++.  +.++++
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence            5899999999999999 999999 99999999876667999999985  455554

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.73  E-value=8.6e-06  Score=63.95  Aligned_cols=44  Identities=25%  Similarity=0.557  Sum_probs=34.6

Q ss_pred             ccccccccccCCceEEe---CCCCchhhHHhHHHHhcc--------CCcccc--cccc
Q 010851          445 SSSCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAK--------KGDCPV--CRTK  489 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~---pCgH~~~C~~C~~~~~~~--------~~~Cp~--Cr~~  489 (499)
                      ...|.||++.......+   +|||.| |..|+...+..        ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35899999987665433   799999 99999886642        137999  9987

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.43  E-value=0.00012  Score=56.25  Aligned_cols=49  Identities=22%  Similarity=0.486  Sum_probs=37.1

Q ss_pred             ccccccccCCce-EEeCCCCchhhHHhHHHHhcc-CCccccccccccceeEe
Q 010851          447 SCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRL  496 (499)
Q Consensus       447 ~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~~  496 (499)
                      -|.+|--..... ..+||.|.| |..|+..+... .+.||.|+.+|..+-++
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~   53 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC   53 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred             ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence            466676555443 567999999 99999998754 56899999999865543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=0.00031  Score=51.79  Aligned_cols=49  Identities=22%  Similarity=0.621  Sum_probs=39.6

Q ss_pred             CCccccccccccCCceE-EeCCCCchhhHHhHHHHhccC--Cccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~  492 (499)
                      +....|.||++...... ...|+|.| -..|+.+|.+.+  ..||+||.....
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            34479999999886443 33899999 999999998776  689999988753

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.93  E-value=0.00041  Score=49.06  Aligned_cols=48  Identities=27%  Similarity=0.457  Sum_probs=37.4

Q ss_pred             CCccccccccccCCceEEeCCCC-----chhhHHhHHHHhcc--CCcccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGH-----MAGCMSCLSEIKAK--KGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH-----~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  491 (499)
                      ++...|-||++...+....||.+     .| -..|+.+|...  +..||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~-H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhh-HHHHHHHHHHhCCCCccCCCCCeee
Confidence            34469999998766666789764     44 99999999864  468999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.71  E-value=0.00035  Score=66.47  Aligned_cols=49  Identities=27%  Similarity=0.678  Sum_probs=37.5

Q ss_pred             CCccccccccccCCc------eEE--eCCCCchhhHHhHHHHhccC-----------Cccccccccccc
Q 010851          443 GSSSSCVICWEAPVE------GAC--VPCGHMAGCMSCLSEIKAKK-----------GDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~------~~~--~pCgH~~~C~~C~~~~~~~~-----------~~Cp~Cr~~i~~  492 (499)
                      +...+|.||++...+      .++  .+|+|.| ...|+.+|-+..           +.||+||.+|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            445799999986654      222  3799999 999999987531           469999999864

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=93.38  E-value=0.05  Score=39.44  Aligned_cols=32  Identities=31%  Similarity=0.638  Sum_probs=27.6

Q ss_pred             ccccccccccCCceEEeCCC----CchhhHHhHHHHh
Q 010851          445 SSSCVICWEAPVEGACVPCG----HMAGCMSCLSEIK  477 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~  477 (499)
                      ...|.+|.++..+.-|+.|-    |.| |+.|...-.
T Consensus        15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sI   50 (93)
T 2cs3_A           15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESI   50 (93)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHH
T ss_pred             eeEeecchhhhccCceeeCCCccCCee-eccccHHHH
Confidence            36999999999999999884    999 999987744

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=89.18  E-value=0.29  Score=44.77  Aligned_cols=47  Identities=23%  Similarity=0.639  Sum_probs=36.9

Q ss_pred             ccccccccccCCceE-EeCCCCchhhHHhHHHHhccC--Cccccccccccc
Q 010851          445 SSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ  492 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~  492 (499)
                      ...|.+|.+-..... +-.|+|.| -..|..++.+..  ..||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            469999999876554 33499999 999999987654  489999987653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.04  E-value=0.14  Score=40.05  Aligned_cols=30  Identities=23%  Similarity=0.525  Sum_probs=24.3

Q ss_pred             ccccccccc-CCceEE--eCCCCchhhHHhHHHH
Q 010851          446 SSCVICWEA-PVEGAC--VPCGHMAGCMSCLSEI  476 (499)
Q Consensus       446 ~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~~  476 (499)
                      ..|.||.+. +..++.  +.|+|.| |..|+..+
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~   36 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT   36 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred             CCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence            689999975 444544  8999999 99999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	499
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	9e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	8e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-05
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	5e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 4e-16
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
           TPL VA    G + + K L++ GA+ N      +  TPLH AA+ G     + LL   A 
Sbjct: 2   TPLHVASF-MGHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 112 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP 155
              +  D  T L  A   GH N+V+ +  +           + P
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 6e-15
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G +  ++ L  +GAS    + + +TPL +A   +G   VAK L++  A +NA 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGHTEVAKYLLQNKAKVNA- 61

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                  TPLH AA+ G    V+LLL   AN  +     HT L +A  +GH+  V A+  
Sbjct: 62  -KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 141 HICY 144
               
Sbjct: 121 KEAS 124

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G V     L   G  ++   + G TPL VA     +  V   L       +  
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVN 324

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                G +PLH AA++G    V LLL  GA+    + D  T L +A+  G+I+V   ++
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 6e-10
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
            + AS   M K+G TPL VA    G + VA+ L+E  A+ NA   G  G TPLH A    
Sbjct: 120 EKEASQACMTKKGFTPLHVAAK-YGKVRVAELLLERDAHPNA--AGKNGLTPLHVAVHHN 176

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
               V+LLL  G +      + +T L +A  +  + V R++  +       
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 7e-10
 Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 32/148 (21%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
             AG  +  + L    A +    K+ +TPL  A    G  N+ K L+E  AN N     G
Sbjct: 41  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPNLATTAG 99

Query: 85  R-------------------------------GGTPLHHAAKRGLEPTVRLLLSCGANAL 113
                                           G TPLH AAK G      LLL   A+  
Sbjct: 100 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 159

Query: 114 VRNDDCHTALGVARIKGHINVVRAIESH 141
               +  T L VA    ++++V+ +   
Sbjct: 160 AAGKNGLTPLHVAVHHNNLDIVKLLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 43/191 (22%), Positives = 62/191 (32%), Gaps = 32/191 (16%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G V     L  + A      K G TPL VA      +++ K L+  G + ++ 
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSP 194

Query: 81  RPGGR-------------------------------GGTPLHHAAKRGLEPTVRLLLSCG 109
              G                                G TPLH AA+ G    V LLLS  
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 254

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 169
           AN  + N    T L +   +GH+ V   +  H        R  Y P  + +    +   K
Sbjct: 255 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 314

Query: 170 IWVVVIPCGTA 180
             +       A
Sbjct: 315 FLLQHQADVNA 325

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 2e-09
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + +  L S+ A+    +K G TPL +     G + VA  LI+ G  ++A 
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDAT 293

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              G   TPLH A+  G    V+ LL   A+   +    ++ L  A  +GH ++V  +  
Sbjct: 294 TRMGY--TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 141 H 141
           +
Sbjct: 352 N 352

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.8 bits (175), Expect = 3e-14
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 4/110 (3%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           +D +  L +    ++ +  E      +A   +G ++V   L EL                
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAE-NGHLHVLNRLCELAPTEIMAMIQAENYHA 164

Query: 90  LHHAAKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVR 136
              AA+ G    +  L          +++ ++ +     A  +GH NV+ 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.1 bits (155), Expect = 8e-12
 Identities = 16/147 (10%), Positives = 40/147 (27%), Gaps = 6/147 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM--DSGL 63
            +++         E + Q +        R  +   +       + +    VA +   S  
Sbjct: 46  EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA 105

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH--T 121
           ++    L+     +   +           AA+ G    +  L       ++         
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENY--QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH 163

Query: 122 ALGVARIKGHINVVRAIESHICYFCGW 148
           A  +A   GH++V+  +          
Sbjct: 164 AFRLAAENGHLHVLNRLCELAPTEATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 1e-08
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPGGRG 86
           + +   SL  +  +    + +      +  V + L    A+ N          ++ G + 
Sbjct: 32  ISANELSLMTLSYKEAIHIFLPG-TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKS 90

Query: 87  GTPLHHAAKRGLEP---TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 AA  G      T+ LLL+      V   + + A  +A   GH++V+  +   
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.2 bits (124), Expect = 6e-08
 Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 26/143 (18%)

Query: 28  GDVDAIRALRSQGASLEWMDKE--GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           G +  +  L     +      +        +A  +  L  +   L EL            
Sbjct: 137 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL-NRLCELAPTEATAMIQAE 195

Query: 86  GG-TPLHHAAKRGLEPTVRLLLSCGAN----------------------ALVRNDDCHTA 122
                   A  RG    +  LL C                          + R  + H A
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 255

Query: 123 LGVARIKGHINVVRAIESHICYF 145
             ++   G  ++V   E    ++
Sbjct: 256 FKLSNPDGVFDLVTKSECLQGFY 278

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.4 bits (122), Expect = 9e-08
 Identities = 17/127 (13%), Positives = 30/127 (23%), Gaps = 18/127 (14%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPL------IVACMDSGLINVAKTLIELGANI---- 77
           G  + I  L      L + +              +A   + L  +         +     
Sbjct: 208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 267

Query: 78  ---NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND-----DCHTALGVARIK 129
              +    G      L       L   +R LLS      +        D +  L +A   
Sbjct: 268 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 130 GHINVVR 136
           G+     
Sbjct: 328 GNQGACA 334

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 13/100 (13%)

Query: 22  YQWVIAGDVDAIRALR--SQGASLEWMDKE-------GKTPLIVACMDSGLINVAKTLIE 72
               +    +   A +  +     + + K            LI    D  L++  + L+ 
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN-DEVLLDDIRFLLS 300

Query: 73  LGA---NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           +             G     L  A + G +    LLLS  
Sbjct: 301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 2e-12
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 21  LYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIV---ACMDSGLINVAKTLIELGAN 76
           L      G V+ ++ L  + GA +   D  G+  LI    +  DS +  +   L++ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVV 135
           +N    G RG TPL  A ++     V+ LL          + D  TAL +A       + 
Sbjct: 212 VNV--RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 136 RAIESH 141
             +   
Sbjct: 270 ELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 2e-11
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 34  RALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93
             L   GA +    + GKTPLI+A     L  V + L +    IN       G T L  A
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND--TDSDGKTALLLA 260

Query: 94  AKRGLEPTVRLLLSCGAN 111
            +  L+    LL   GA+
Sbjct: 261 VELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
           E    LI A   +  +++ + L+E GAN+N     G G TPLH+A +   E  V LLL  
Sbjct: 4   EDNHLLIKAVQ-NEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRH 61

Query: 109 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 168
           GA+ ++R  +  T   +A I G + +++   S          +FYG +     A     +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC--DFYGFTAFMEAAVYGKVK 119

Query: 169 KIW 171
            + 
Sbjct: 120 ALK 122

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           L   V    +  ++ L  Q    +   D +GKT L++A     L  +A+ L + GA+ + 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 8e-05
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGAN 76
           + LL + V   DVD ++ L   GA++ + ++E G TPL  A       ++ +  + L   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVE--LLLRHG 62

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            +       G TP   AA  G    ++L LS GA+    +    TA   A + G +  ++
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 137 AIESHICYFCGW 148
            +          
Sbjct: 123 FLYKRGANVNLR 134

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 45/179 (25%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            +   ++++         IAG V  ++   S+GA +   D  G T  + A +   +  + 
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 68  KTL-------IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL-------------- 106
                     +      +  R    G T L  AA++G    +++LL              
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 107 ------------------------SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                                     GA+  VR +   T L +A  K H+ +V+ +   
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 9e-12
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 1/143 (0%)

Query: 7   SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINV 66
            +N ++Q+   +  L + +     +   +L +  ++                 DS L  V
Sbjct: 29  VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 88

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
                    N+N       G TPLH          V+ L+  G+N L  ++   + L  A
Sbjct: 89  NDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

Query: 127 RIKGHINVVRAIESHICYFCGWL 149
               +       E+ + Y    L
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCL 170

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 15/98 (15%), Positives = 31/98 (31%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           D+     ++ Q   ++    E ++       +     +    ++             G T
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
            L+ AA+ G    V  LL  GA+  + N      +   
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 44  EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVR 103
           +    +G+T L  A   S +  V   + E G+N    +    G TP+  AA+ G    V 
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK--DKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            L+  GA+    +   HTA  +A+   H N+V   +
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 9e-11
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 39  QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL 98
           +G++ +  D++GKTP+++A    G I V   LI+ GA++ A        T    A     
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQ-EGRIEVVMYLIQQGASVEA--VDATDHTARQLAQANNH 266

Query: 99  EPTVRLLLSC 108
              V +   C
Sbjct: 267 HNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 51  KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL---- 106
           ++P+ +    +G   + + +     NI   R      T LH  A          L+    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPR---HNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 107 ----SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
               + GA+    + D +T L +A +     +V  +         +
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 103

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           +      G ++ +  L  QGAS+E +D    T   +A   +   N+      
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA-NNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 10/152 (6%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-------DSGLINVAKTLIELGANINA 79
           AG       +  +  ++    +  +T L            +  +++ AK  I  GA++N 
Sbjct: 11  AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN- 68

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                   TPL  A        V  L+  GA+  + N    +AL  A       ++  + 
Sbjct: 69  -AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 127

Query: 140 SHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171
           +                    +      R   
Sbjct: 128 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 159

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.0 bits (149), Expect = 3e-11
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 32  AIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91
           A + L S   +     K G T L V     G   V K LI+   ++N     G   TPLH
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHV-AAAKGYTEVLKLLIQARYDVNIKDYDGW--TPLH 237

Query: 92  HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRA 137
            AA  G E   R+L+    +    N    TA  VA   I G++  ++ 
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 18/70 (25%), Positives = 27/70 (38%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            G     A   G    V  LL  GA+    N D  TAL  A I  ++++V+ +  +    
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 146 CGWLREFYGP 155
                E + P
Sbjct: 100 NQPDNEGWIP 109

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + ++ L      +   D +G TPL  A    G     + L+E   ++ A 
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEA- 260

Query: 81  RPGGRGGTPLHHAAK 95
                G T    A +
Sbjct: 261 -VNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           R    GGT LH AA +G    ++LL+    +  +++ D  T L  A   G     R +  
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 141 H 141
           +
Sbjct: 254 N 254

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 3/167 (1%)

Query: 7   SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINV 66
              + + +     +      +GD + +  L  +GA + + + +G T L  AC+D    NV
Sbjct: 30  KRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD---NV 86

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
                 +    N  +P   G  PLH AA  G       L+S GA+    N +  T L +A
Sbjct: 87  DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

Query: 127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 173
             +    +++   +         R+      L      L S  I  V
Sbjct: 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV 193

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78
           L+     G  +A R L      +E ++K G+T   VA       ++   L EL    N
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE-----DILGYLEELQKKQN 288

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 5e-11
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           +  + +  +    L+    AG  + ++AL  +GA +  +++ G TPL           +A
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY-AASKNRHEIA 119

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L+E GAN +A        T +H AA +G    + +LL   A+  +++ + +T L +A 
Sbjct: 120 VMLLEGGANPDA--KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177

Query: 128 IKGHINVVRAIESH 141
            +  +   + + S 
Sbjct: 178 DEERVEEAKLLVSQ 191

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 9e-11
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+        +    L   GA+ +  D    T +       G + +   L+   A+ N  
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHR-AAAKGNLKMIHILLYYKASTNI- 164

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G TPLH A         +LL+S GA+  + N +  T L VA+  G   +++ +
Sbjct: 165 -QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 37/172 (21%)

Query: 20  LLYQWVIAGDVDAIR-ALRSQGASLEWMDKEGKTPLIVAC-------------------- 58
           ++     +G ++ ++ ++ +  +     D++ +T L  AC                    
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 59  ------------MDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                         +G   + K L+  GA +NA      G TPLH+AA +       +LL
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA--VNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFL 158
             GAN   ++    TA+  A  KG++ ++  +          +++  G + L
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHIL--LYYKASTNIQDTEGNTPL 173

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 9e-10
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 442 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 497
             +   C IC E   +    PCGH+       S  +++   CP CR +I     + 
Sbjct: 20  GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 2/112 (1%)

Query: 43  LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHAAKRGLEPT 101
             ++ ++G T L +A +          L+   A           G T LH AA  G   T
Sbjct: 2   FGYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 102 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFY 153
           V  L + GA  LV     HTAL +A           +            + Y
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 58  CMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA 110
            +++   +V + L++ GA+  A   GGR  TPL  A  R      RLL + GA
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGR--TPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 7e-07
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
                    + +           LE  + +G TPL VA +      V             
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
               GR  TPLH A +      + LLL  GA+   R     T LG A ++ +  + R + 
Sbjct: 188 EPTCGR--TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 140 SH 141
           +H
Sbjct: 246 AH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           + +   +     +       L+  V A     +  L   GA        G+TPL  A + 
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL- 234

Query: 61  SGLINVAKTLIELGA 75
                +A+ L   GA
Sbjct: 235 RPNPILARLLRAHGA 249

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 445 SSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 495
           +  C IC E P   +  +PC H   C  C++    +   CP+C+  +  V+ 
Sbjct: 5   AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           ++   +       L+  V     + ++ L  +GA ++ +D +     ++  +++  +++ 
Sbjct: 101 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 160

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           + L++ GAN+NA    G   + LH A+ RGL P VR L+  GA++ ++N    T L VAR
Sbjct: 161 QLLLQHGANVNAQMYSGS--SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 218

Query: 128 IKGHINVVR 136
            +  I+++R
Sbjct: 219 SRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIEL----GANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           +G TPL +A +  G +     L+ L    G  ++ Y       TPLH A    L   VRL
Sbjct: 2   DGDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRL 58

Query: 105 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
           L++ GA+ +  +    TA  +A        +RA+          
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 102

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            N + +       L           +  L +  A +   D  GKT L  A   +    V 
Sbjct: 81  TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVN 140

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L+    + N      +  TPL  AA+ G     + LL   AN  + +        VA 
Sbjct: 141 ILLMH---HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVAS 197

Query: 128 IKGHINVVRAIE 139
            + H ++VR ++
Sbjct: 198 ERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           V   L+  GA +NA      G T LH AA+       + LL  GA+A  +++   T L  
Sbjct: 4   VISDLLAQGAELNA-TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 126 ARIKGHINVVRAIESHICYFCGW 148
           A     + V + +  +       
Sbjct: 63  AVAADAMGVFQILLRNRATNLNA 85

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 490
           C  C         +PC H   C  CL     +   CP+C+   
Sbjct: 9   CQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQ---CPICQAPW 47

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 10/134 (7%)

Query: 16  SKDELLYQWVIAGDVDAIRALRSQGASL------EWMDKEGKTPLIVACM--DSGLINVA 67
           +K   L + V   D+  +    + G  L          +  +T L +A    D   +++ 
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L++   N++     G                 ++LLL   A+  + N+   T L +A+
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCC--LTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 128 IKGHINVVRAIESH 141
              H +    +   
Sbjct: 123 RLKHEHCEELLTQA 136

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 8e-07
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 439 VKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKIN 491
                 S SC IC     +     C H+  C  C+   +K     CP CR    
Sbjct: 17  PAHFVKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCF 69

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 88  TPLHHAAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
            PLH A        V+ LL S  +  L ++ D    L  +       +   + S +    
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 147 GW 148
             
Sbjct: 62  LD 63

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           W DK+G TPL  A  +         + + GA  +      +G      A    +    + 
Sbjct: 167 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--VDNKGAKAEDVALNEQV---KKF 221

Query: 105 LLSCGANA 112
            L+   +A
Sbjct: 222 FLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
            PL  ACM++    V + L    + +      GR   PLH +           LLS   N
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSKMEN 59

Query: 112 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
             + +    +      I   +  +  ++S        
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 96

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 6/135 (4%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            + ++        L+  V     +  + L   GAS+   DK  + PL  A     L  + 
Sbjct: 96  PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 155

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVA 126
                  + +       +G TPL HA   G      LL+   GA   + ++    A  VA
Sbjct: 156 LLCGLGKSAV--NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

Query: 127 RIKGHINVVRAIESH 141
               +  V +   ++
Sbjct: 214 L---NEQVKKFFLNN 225

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 13/125 (10%), Positives = 26/125 (20%), Gaps = 33/125 (26%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLE--------------------------------WMD 47
           LL    + G+ D ++ +  +                                        
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 48  KEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHAAKRGLEPTVRLLL 106
                  +        + V K L+E GA + A      +         + G     + L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 107 SCGAN 111
                
Sbjct: 124 GVQEK 128

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 447 SCVICWEAPVEGACVPCGHM--AGCMSCLSEIKAKKGDCPVCRTKINQ 492
            C IC E   E     C H+    CM  L   K     CP+C+  I +
Sbjct: 23  ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 5e-05
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 447 SCVICWEAPVEGACV----PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 492
            C +C E             CG+             + G CP CR    +
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 441 DDGSSSSCVICWEAPVEGA----CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 490
           DDG    C +C     +G        CGH      C+         CP+CR  +
Sbjct: 3   DDGVE--CAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV 53

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G T LH A        V LLL CGA+        ++   +   +    + + +   
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
                G+T L +A        V+  L   GA++N     G   +P      R      + 
Sbjct: 140 QEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGY--SPYQLTWGRPSTRIQQQ 196

Query: 105 LLSCGANALVRNDDC 119
           L       L    + 
Sbjct: 197 LGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 86  GGTPLHHAAKRG----LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G + LH A            +R +    A    +N+   T L +A I     +  A+   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 142 ICYFCGW 148
            C     
Sbjct: 62  GCDPELR 68

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 448 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLYT 498
           C I  + P      P        S L +     G+ P+    +   +++ +  
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 55

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 15/62 (24%), Positives = 20/62 (32%)

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
           G  L  AA RG    +  LL    N   +N    TAL V ++       R +        
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 147 GW 148
             
Sbjct: 62  KD 63

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 11/63 (17%), Positives = 20/63 (31%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            G  L  AA+ G +  VR+L++ GA               A+          + + +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 146 CGW 148
              
Sbjct: 62  ART 64

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 446 SSCVICWEAPVEGACV-----PCGHMAGCMSCLSEI-KAKKGDCPVCRTKINQ 492
             C  C         +      CGH   C SC+  +     G+CP C T + +
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 85  RGGTPLHHAAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           R G  L  AA RG    VR LL     +    N    TAL V         +  ++    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 144 YFCGW 148
                
Sbjct: 61  PNVQD 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	499
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.02
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.9
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.88
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.84
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.8
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.79
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.74
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.68
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.58
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.58
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.47
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.41
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.38
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.23
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.12
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.2
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	91.77

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=255.67  Aligned_cols=205  Identities=18%  Similarity=0.201  Sum_probs=104.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC
Q 010851           19 ELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (499)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g   97 (499)
                      +.|+.+|..|+.+.|+.+|. .+..++.+|.+|+||||+||.. |+.+++++|+..+.+....  +..+.+++++++..+
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~-g~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAASAG   81 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCSCCC--CTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHh-hhhcccccccccccccccc--ccccccccccccccc
Confidence            44455555555554444433 3344444555555555555544 4555555555555444444  344445555555555


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhc
Q 010851           98 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (499)
Q Consensus        98 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~  177 (499)
                      +.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++++  .++.+|.|||| +|+..++.+++++|+..
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~--~~~~~~~t~L~-~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMH-RAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHT
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCccch-hhhhcCCcchhhhhccc
Confidence            5555555555555555555555555555555555555555555555544  44555555555 45555555555555555


Q ss_pred             CCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHh
Q 010851          178 GTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (499)
Q Consensus       178 ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~  239 (499)
                      +.+++.++..+.++++.+...+....+..|+..          +.+++++|+.|+||||+|.
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~----------Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ----------GASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT----------TCCSCCCCTTSCCHHHHCC
T ss_pred             cceeeeccCCCCceeccccccCcHHHHHHHHHC----------CCCCCCCCCCCCCHHHHHH
Confidence            555555554455555555444443333332211          1225667788888888875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-33  Score=262.04  Aligned_cols=197  Identities=20%  Similarity=0.154  Sum_probs=177.8

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCC
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~   87 (499)
                      +..+++|+||||+|++.|+.++|++|+++|++   ++.+|..|+||||+||.. |+.+++++|+++|++++.+  |.+|.
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~i~~~--d~~g~   79 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGH   79 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhh-ccccccccccccccccccc--ccccc
Confidence            34688999999999999999999999999988   667788999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCC-----------------------------------------------CCcccCCCCC
Q 010851           88 TPLHHAAKRGLEPTVRLLLSCGA-----------------------------------------------NALVRNDDCH  120 (499)
Q Consensus        88 TpL~~A~~~g~~~~v~~Ll~~ga-----------------------------------------------~~~~~d~~g~  120 (499)
                      ||||+|+..++.+++++|++.+.                                               +++.+|..|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            99999999999999999976432                                               2345788899


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccC
Q 010851          121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (499)
Q Consensus       121 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~  200 (499)
                      ||||+|+..++.+++++|++++++.+ ..++..|.|||| +|+..++.+++++|+++|++++.++..++++++++.....
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~TpL~-~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             ccccccccccccccccchhccccccc-cccccccccccc-ccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999887 356788999999 9999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhc
Q 010851          201 PRAVIALWKAKI  212 (499)
Q Consensus       201 ~~~~~~l~~~~~  212 (499)
                      ...+..|+....
T Consensus       238 ~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         238 PILARLLRAHGA  249 (255)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            888777665443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.4e-30  Score=243.24  Aligned_cols=166  Identities=22%  Similarity=0.169  Sum_probs=152.3

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCC-------------
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-------------   76 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~-------------   76 (499)
                      .+.+|..|+||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+.. ++.+++++|++.+..             
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  116 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQS  116 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhcc-CchHHHHHHHhhccchhcccchhhhhHH
Confidence            667889999999999999999999999999999999999999999999987 889999999765432             


Q ss_pred             ----------------------------------CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc-cCCCCCC
Q 010851           77 ----------------------------------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALV-RNDDCHT  121 (499)
Q Consensus        77 ----------------------------------~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t  121 (499)
                                                        ++.  +|..|+||||+|+..++.+++++|++.+++.+. .+..|.|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~--~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~T  194 (255)
T d1oy3d_         117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT  194 (255)
T ss_dssp             ---------------------------CCCGGGGTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             hhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccc--ccccCcccccccccccccccccchhcccccccccccccccc
Confidence                                              122  367799999999999999999999999998875 4678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCC
Q 010851          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (499)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~  181 (499)
                      |||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++||+.
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~gadin--~~d~~g~t~L~-~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         195 PLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCC
T ss_pred             cccccccccHHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999  99999999999 999999999999999999973

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.6e-29  Score=241.84  Aligned_cols=179  Identities=23%  Similarity=0.280  Sum_probs=166.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHH
Q 010851           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (499)
Q Consensus        14 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A   93 (499)
                      +.+|.|+||+||..|+.++|++||++|+++|.+|.+|+||||+|+.. |+.+++++|+++|++.+..  +..+.|||++|
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~-g~~eiv~~Ll~~~~~~~~~--~~~~~~~L~~a  113 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHAA  113 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhc-CCceeeeeecccccccccc--ccccccccccc
Confidence            45678999999999999999999999999999999999999999997 9999999999999999888  78999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcc-----------------------------------------------------------
Q 010851           94 AKRGLEPTVRLLLSCGANALV-----------------------------------------------------------  114 (499)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~-----------------------------------------------------------  114 (499)
                      +..++.++++.|+++|+..+.                                                           
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccc
Confidence            999999999999998764432                                                           


Q ss_pred             -cCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccC
Q 010851          115 -RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  193 (499)
Q Consensus       115 -~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~  193 (499)
                       .+..|.||||+|+..|+.+++++|+++|++++  .++..|+|||| +|+..|+.+++++|+++|++++.++..|+++++
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din--~~~~~g~TpL~-~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~  270 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFD  270 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             cccCCCCChhhHHHHcCChhhhcccccceeccc--ccccCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence             34567899999999999999999999999998  89999999999 999999999999999999999999999999999


Q ss_pred             ccccc
Q 010851          194 PSLQD  198 (499)
Q Consensus       194 ~~~~~  198 (499)
                      ++.++
T Consensus       271 ~A~e~  275 (291)
T d1s70b_         271 VADED  275 (291)
T ss_dssp             SCCSG
T ss_pred             HHHHH
Confidence            99763

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=219.82  Aligned_cols=153  Identities=23%  Similarity=0.288  Sum_probs=147.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCC
Q 010851           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (499)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~   98 (499)
                      ++||+||..|+.++|++|+++|+++|.+|.+|+||||+|+ . |+.+++++|+++|++++.+  +..|.++|+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~-~~~ei~~~Ll~~~a~~~~~--~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-L-GNPEIARRLLLRGANPDLK--DRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-S-SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-c-ccccccccccccccccccc--cccCcccccccccccc
Confidence            8999999999999999999999999999999999999886 5 8899999999999999998  8899999999999999


Q ss_pred             HHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccc-ccccccccccCCCHHHHHhhhcCCHHHHHHHHhc
Q 010851           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC-YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (499)
Q Consensus        99 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~  177 (499)
                      .++++.|+..+.+++..|..|.+|||+|+..++.+++++|+++++ +.+  .+|.+|+|||| +|++.++.+++++|+++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~d~~g~TpL~-~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999997 666  89999999999 99999999999999998


Q ss_pred             C
Q 010851          178 G  178 (499)
Q Consensus       178 g  178 (499)
                      |
T Consensus       156 G  156 (156)
T d1ihba_         156 G  156 (156)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=5.1e-30  Score=244.62  Aligned_cols=226  Identities=16%  Similarity=0.139  Sum_probs=143.5

Q ss_pred             CcccccCccccC-CCchHHHHHHHHcCCHHHHHHH--------HHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHc
Q 010851            3 QSLNSMNQHQQR-QSKDELLYQWVIAGDVDAIRAL--------RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL   73 (499)
Q Consensus         3 ~~l~~~~~~~~d-~~g~t~L~~Aa~~g~~~~v~~L--------l~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~   73 (499)
                      +.|...+.|..| +.|+||||+||..|+.++|+.|        ++.|+++|.+|.+|+||||+|+.. |+.+++++|+++
T Consensus        18 ~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~   96 (277)
T d2fo1e1          18 EPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKA   96 (277)
T ss_dssp             SCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT
T ss_pred             HHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccc-cccccccccccc
Confidence            345556667666 4699999999999999988777        567999999999999999999998 999999999999


Q ss_pred             CCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCCcccCCCCCCHHHHHHHcCCHH---HHHHHHHcccccc-
Q 010851           74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKGHIN---VVRAIESHICYFC-  146 (499)
Q Consensus        74 ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g---a~~~~~d~~g~tpL~~A~~~g~~~---~v~~Ll~~g~~~~-  146 (499)
                      |++++.+  |..|.|||++|+..++.+++++++..+   ..++..+..+.++.+++...+..+   .+.++.++..... 
T Consensus        97 Gad~n~~--~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (277)
T d2fo1e1          97 GADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  174 (277)
T ss_dssp             TCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             ccccccc--cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccc
Confidence            9999998  889999999999999999998887653   233334444444444444433221   2222222111000 


Q ss_pred             -----cccccccCCCHHHHHhhhcCCHHHHHHH-HhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCC
Q 010851          147 -----GWLREFYGPSFLEALAPQLMSRKIWVVV-IPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQP  220 (499)
Q Consensus       147 -----~~~~~~~g~t~Lh~~A~~~~~~~~~~~L-l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  220 (499)
                           ....+..|+|+|| .++..++.++++++ ...+.+.+.++..++++++++...+....+..|++.          
T Consensus       175 ~~~~~~~~~~~~g~t~L~-~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~----------  243 (277)
T d2fo1e1         175 DGAARKDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ----------  243 (277)
T ss_dssp             CSGGGTSSSSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----------
T ss_pred             cccccccccccCCCCccc-cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC----------
Confidence                 0123334444444 44444444444432 233344444444444444444444443333322211          


Q ss_pred             CCceeeecCCCcchhHhHhhCC
Q 010851          221 DPSLTIYDQATKIRYKFASANE  242 (499)
Q Consensus       221 ~~~~~~~d~~g~tpl~~a~~~~  242 (499)
                      +++++.+|+.|+||||+|+.+.
T Consensus       244 gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         244 GASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             TCCSSCCCSSSCCHHHHHHHTT
T ss_pred             cCCCCCcCCCCCCHHHHHHHcC
Confidence            1225677888999999999644

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=234.67  Aligned_cols=192  Identities=22%  Similarity=0.252  Sum_probs=166.4

Q ss_pred             CchHHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHH
Q 010851           16 SKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~   91 (499)
                      +|+||||+|+..|+.    +++++++..|+++|.+|.+|+||||+|+.. |+.+++++|+++|++++.+  |..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~-~~~~iv~~L~~~g~d~~~~--d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccc-ccccccccccccccccccc--ccccccccc
Confidence            689999999999986    455666678999999999999999999997 9999999999999999998  889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------cccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhc
Q 010851           92 HAAKRGLEPTVRLLLSCGANA------LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (499)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~  165 (499)
                      +++..++.++++.|++.+.+.      ......|.||||+|+..++.+++++|+..|+.++ ...+.+|.|||| +|+..
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~G~T~L~-~A~~~  155 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALH-LAVDL  155 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHH-HHHHT
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccc-cccccCCCCccc-ccccc
Confidence            999999999999999987553      2345578999999999999999999999999887 244578999999 99999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhc
Q 010851          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI  212 (499)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  212 (499)
                      |+.+++++|+++|+|++.++..+.++++++........+..+.+...
T Consensus       156 g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         156 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             ccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999888877777664433

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1e-28  Score=229.08  Aligned_cols=210  Identities=17%  Similarity=0.113  Sum_probs=183.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccC-CCCCCCcHHHHHHH
Q 010851           18 DELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-PGGRGGTPLHHAAK   95 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~-~d~~g~TpL~~A~~   95 (499)
                      ++|||+||..|+.++|+.||+ .+.+++.+|.+|+||||+|+.. |+.+++++|+++|++++..+ .+..|.||+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHc-CCccccchhhhhhcccccccccccccccccccccc
Confidence            479999999999999999988 4578899999999999999998 99999999999999987542 36689999999999


Q ss_pred             cCCHHHHHHHHHCCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHH
Q 010851           96 RGLEPTVRLLLSCGANA--LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (499)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~--~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~  173 (499)
                      .+..++++.++..+...  ...+..+.|+|+.++..++.+++++|+..+.+..  .+|..|+|||| +|+..++.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~  156 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIEL  156 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccc--ccCCCCCCccc-hhhhccccccccc
Confidence            99999999999888654  4567889999999999999999999999999888  88999999999 9999999999999


Q ss_pred             HHhcC-CCCCCCCcccccccCccccccChHHHHHHHHhhcCCCccCCCCCceeeecCCCcchhHhHhh
Q 010851          174 VIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (499)
Q Consensus       174 Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~a~~  240 (499)
                      |++.+ .+++.++..+.+++|++........+..|+...         +.+++++|+.|+||||+|+.
T Consensus       157 Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~---------gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         157 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---------GAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---------CCCSCCCCTTSCCTGGGCSC
T ss_pred             ccccccccccccccccCCchhhhcccccHHHHHHHHHhc---------CCCCCCcCCCCCCHHHHHhh
Confidence            99987 577888889999999999988887777665432         33478899999999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-28  Score=226.65  Aligned_cols=184  Identities=22%  Similarity=0.207  Sum_probs=177.3

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +...+.+|..|+||||+|+..|+.+++++|++.+.+....+..+.+++++|+.. ++.+++++|+++|++++.+  |..|
T Consensus        27 ~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Ll~~~~d~~~~--d~~g  103 (223)
T d1uoha_          27 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GRDEIVKALLGKGAQVNAV--NQNG  103 (223)
T ss_dssp             GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred             CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc-cccchhHHHhccCceeEee--CCCC
Confidence            456778999999999999999999999999999999988999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcC
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~  166 (499)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++++.+++  .+|.+|+|||| +|+..+
T Consensus       104 ~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~--~~d~~g~TpL~-~Aa~~g  180 (223)
T d1uoha_         104 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN--IQDTEGNTPLH-LACDEE  180 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHHTT
T ss_pred             CchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee--eccCCCCceec-cccccC
Confidence            999999999999999999999999999999999999999999999999999999999999  99999999999 999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCcccccccCccc
Q 010851          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSL  196 (499)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~  196 (499)
                      +.+++++|+++|++++.++..++++++++.
T Consensus       181 ~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         181 RVEEAKLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             cHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999999999884

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-28  Score=213.80  Aligned_cols=152  Identities=26%  Similarity=0.306  Sum_probs=143.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHc
Q 010851           18 DELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~   96 (499)
                      .+.||.||..|+.++|+.||+. ++++|.+|..|+||||+|+ . |+.+++++|++++++++..  +..|.+||++++..
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~-~~~~~v~~Ll~~~~~~~~~--~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-F-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-T-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-c-ccccccccccccccccccc--cccccccccccccc
Confidence            3459999999999999999985 7899999999999999987 4 7789999999999999998  78999999999999


Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHh
Q 010851           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (499)
Q Consensus        97 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~  176 (499)
                      ++.+++++++++|++++.+|..|.||||+|+..|+.+++++|+ .|++++  .+|.+|+|||| +|+..|+.+++++|++
T Consensus        79 ~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH--RRDARGLTPLE-LALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHHT
T ss_pred             ccccccccccccccccccccCCCCeeecccccccccccccccc-cccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999887 688998  89999999999 9999999999999997


Q ss_pred             c
Q 010851          177 C  177 (499)
Q Consensus       177 ~  177 (499)
                      |
T Consensus       155 h  155 (156)
T d1bd8a_         155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            6

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.7e-27  Score=206.66  Aligned_cols=151  Identities=24%  Similarity=0.258  Sum_probs=144.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHc
Q 010851           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (499)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~   96 (499)
                      +.||||.|++.|+.++|++||++|++++ .|..|+||||+|+.. ++.++++.++.........  +..+.++++.++..
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccc-ccccccccccccccccccc--cccccccccccccc
Confidence            4699999999999999999999999887 689999999999998 9999999999998888776  77889999999999


Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHH
Q 010851           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (499)
Q Consensus        97 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~L  174 (499)
                      .+.+++++|+.+|++++.+|..|+||||+|+..|+.++|++|+++|++++  .+|.+|+|||| +|+.+|+.+++++|
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~--~~d~~g~Tpl~-~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCc--ccCCCCCCHHH-HHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999  89999999999 99999999999976

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.7e-27  Score=219.34  Aligned_cols=188  Identities=18%  Similarity=0.092  Sum_probs=173.3

Q ss_pred             ccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcc---cCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCC
Q 010851            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEW---MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG   83 (499)
Q Consensus         7 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d   83 (499)
                      +...+.+|.+|+||||+|+..|+.++|++|+++|++++.   .+..|.+|+|+|+.. +..++++.++..+...+....+
T Consensus        24 ~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  102 (229)
T d1ixva_          24 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKIT  102 (229)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHSSSSCCCTTCCC
T ss_pred             CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            456778999999999999999999999999999999874   466899999999998 9999999999999877665557


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcc-cccccccccccCCCHHHHHh
Q 010851           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALA  162 (499)
Q Consensus        84 ~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~g~t~Lh~~A  162 (499)
                      ..+.|+|+.++..++.+++++|++.|.+.+.+|..|+||||+|+..|+.+++++|++++ .+++  .+|.+|+|||| +|
T Consensus       103 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in--~~d~~g~TpLh-~A  179 (229)
T d1ixva_         103 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HA  179 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HH
T ss_pred             cccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccccc--ccccccCCchh-hh
Confidence            88999999999999999999999999999999999999999999999999999999998 4667  88999999999 99


Q ss_pred             hhcCCHHHHHHHHh-cCCCCCCCCcccccccCccccc
Q 010851          163 PQLMSRKIWVVVIP-CGTANPSKPLRFELVIYPSLQD  198 (499)
Q Consensus       163 ~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~l~~~~~~  198 (499)
                      +..++.+++++|++ .|++++.++..++++++++.+.
T Consensus       180 ~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             cccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            99999999999997 5999999999999999998754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-27  Score=238.95  Aligned_cols=183  Identities=25%  Similarity=0.215  Sum_probs=165.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCC
Q 010851           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (499)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~   98 (499)
                      ||||+||..|+.++|++|+++|+++|..|..|+||||+|+.. |+.+++++||++|++++.+  +..|+||||+|+..|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~gadi~~~--~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTSCCHHHHHHHHTC
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHHHcCC
Confidence            899999999999999999999999999999999999999998 9999999999999999998  8899999999999999


Q ss_pred             HHHHHHHHHCCCC---------------------------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 010851           99 EPTVRLLLSCGAN---------------------------------ALVRNDDCHTALGVARIKGHINVVRAIESHICYF  145 (499)
Q Consensus        99 ~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  145 (499)
                      .+++++|+..+.+                                 ....+..+.++|+.|+..++.+++++|+++|+++
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~  158 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP  158 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999875543                                 3445778999999999999999999999999999


Q ss_pred             ccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHH
Q 010851          146 CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL  207 (499)
Q Consensus       146 ~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  207 (499)
                      +  ..+.+|.+||| +|+..++.+++++|+.+|++++..+..+.++++.............+
T Consensus       159 ~--~~~~~~~~~L~-~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l  217 (408)
T d1n11a_         159 N--AAGKNGLTPLH-VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL  217 (408)
T ss_dssp             T--CCCSSCCCHHH-HHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             C--cCCCcCchHHH-HHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhh
Confidence            8  88999999999 99999999999999999999998888888877776665555444443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-27  Score=225.82  Aligned_cols=166  Identities=26%  Similarity=0.297  Sum_probs=121.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccC-------------
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYR-------------   81 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~-------------   81 (499)
                      +++|+||+|++.|++++|++||++|+++|.++ ..|+||||+|+.. |+.+++++|++.+...+..+             
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~-~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHc-CCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            46899999999999999999999999999775 4699999999997 99999999999887654432             


Q ss_pred             -------------------------------------------------------------CCCCCCcHHHHHHHcCCHH
Q 010851           82 -------------------------------------------------------------PGGRGGTPLHHAAKRGLEP  100 (499)
Q Consensus        82 -------------------------------------------------------------~d~~g~TpL~~A~~~g~~~  100 (499)
                                                                                   .+..|.||||+|+++|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                                                                         1223789999999999888


Q ss_pred             HHHHHHHC-CCCC-------------------------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHc-
Q 010851          101 TVRLLLSC-GANA-------------------------------------LVRNDDCHTALGVARIKGHINVVRAIESH-  141 (499)
Q Consensus       101 ~v~~Ll~~-ga~~-------------------------------------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-  141 (499)
                      ++++|+++ |+++                                     +.+|..|.||||+|+..|+.++|++|+++ 
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            87777653 4444                                     44455566666666666666666666653 


Q ss_pred             ccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCC
Q 010851          142 ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP  185 (499)
Q Consensus       142 g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~  185 (499)
                      |++++  .+|.+|.|||| +|++.++.+++++||++||+++.+|
T Consensus       243 g~din--~~d~~G~TpL~-~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         243 HIEIN--DTDSDGKTALL-LAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCCc--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCccc
Confidence            55665  56666666666 6666666666666666666665554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=221.34  Aligned_cols=171  Identities=23%  Similarity=0.150  Sum_probs=156.0

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCcc----C
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY----R   81 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~----~   81 (499)
                      .+.++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.++++.|++.+......    .
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~  106 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKA  106 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             CCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccccc-ccccccchhhhhcccccccccccc
Confidence            3567889999999999999999999999999999999999999999999999998 9999999999987664332    1


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHH
Q 010851           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEA  160 (499)
Q Consensus        82 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~  160 (499)
                      ....|.||||+|+..++.+++++|+..|+.++..+ .+|+||||+|+..|+.+++++|+++|+|++  .+|..|+|||| 
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~--~~~~~G~tpl~-  183 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-  183 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-
T ss_pred             cccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc--ccCCCCCCHHH-
Confidence            24568999999999999999999999999987765 579999999999999999999999999999  99999999999 


Q ss_pred             HhhhcCCHHHHHHHHhcCCC
Q 010851          161 LAPQLMSRKIWVVVIPCGTA  180 (499)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~  180 (499)
                      +|+..++.+++++|++.+.+
T Consensus       184 ~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         184 LTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             GCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHCCCHHHHHHHHHcCCc
Confidence            99999999999999998765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-26  Score=211.85  Aligned_cols=180  Identities=21%  Similarity=0.210  Sum_probs=160.8

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHH
Q 010851           15 QSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (499)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL   90 (499)
                      ++|+||||+|+..|+.++|+.|++    .|+++|.+|..|+||||+|+.. |+.+++++|+++|++++..  +..|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~-~~~~iv~~Ll~~ga~~~~~--~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcc-ccccccccccccccccccc--cccccccc
Confidence            479999999999999999998875    8999999999999999999998 9999999999999999988  77888999


Q ss_pred             HHHHHcCCHHHHHHHHHCC-------------------------------------CC-CcccCCCCCCHHHHHHHcCCH
Q 010851           91 HHAAKRGLEPTVRLLLSCG-------------------------------------AN-ALVRNDDCHTALGVARIKGHI  132 (499)
Q Consensus        91 ~~A~~~g~~~~v~~Ll~~g-------------------------------------a~-~~~~d~~g~tpL~~A~~~g~~  132 (499)
                      +.|...++.++++.+....                                     .+ ....+..|.++|+.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            9998888888777665432                                     11 122455789999999999999


Q ss_pred             HHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccC
Q 010851          133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (499)
Q Consensus       133 ~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~  200 (499)
                      .+++.++++|.+++  .+|..|.|||| +|+..|+.+++++|+++|++++.++..+.++++++.+.+.
T Consensus       158 ~~~~~~~~~~~~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         158 SMVQLLLQHGANVN--AQMYSGSSALH-SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             hhhhhhhhhccccc--cccccCcchHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Confidence            99999999999988  89999999999 9999999999999999999999999999999999986554

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=2.6e-27  Score=216.27  Aligned_cols=162  Identities=23%  Similarity=0.242  Sum_probs=119.3

Q ss_pred             ccCccc-cCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHH--------------------
Q 010851            7 SMNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN--------------------   65 (499)
Q Consensus         7 ~~~~~~-~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~--------------------   65 (499)
                      +.++|. .|.+|.||||+||..|+.++|++|+++|++++.++..+.++++.++.. ++..                    
T Consensus        12 g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   90 (209)
T d1ot8a_          12 GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA-DAMGVFQILLRNRATNLNARMHDG   90 (209)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHTCTTCCTTCCCTTC
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            456666 589999999999999999999999999999999999999999998865 4333                    


Q ss_pred             --------------HHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCC
Q 010851           66 --------------VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (499)
Q Consensus        66 --------------~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~  131 (499)
                                    ..+.|+.++++++.+  +..|+|||++++..+..++++.|++.+.+++..|..|.||||+|+..|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~--~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_          91 TTPLILAARLAIEGMVEDLITADADINAA--DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS  168 (209)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhhhhhccccccc--CCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccH
Confidence                          344555666666665  5666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHH
Q 010851          132 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (499)
Q Consensus       132 ~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~L  174 (499)
                      .++|++|+++|++++  .+|..|+|||| +|++.++.+++++|
T Consensus       169 ~~~v~~Ll~~gad~n--~~d~~g~Tpl~-~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         169 YEASKALLDNFANRE--ITDHMDRLPRD-VASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHhhc
Confidence            666666666666666  66666666666 66666666666654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-26  Score=229.21  Aligned_cols=221  Identities=22%  Similarity=0.146  Sum_probs=172.4

Q ss_pred             CccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccC-------
Q 010851            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-------   81 (499)
Q Consensus         9 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~-------   81 (499)
                      ..+..+..|.++|++|+..++.++++.|+++|++++..+.+|.+|||+|+.. |+.+++++|+++|++++..+       
T Consensus       124 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~t~l  202 (408)
T d1n11a_         124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH-NNLDIVKLLLPRGGSPHSPAWNGYTPL  202 (408)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT-TCHHHHHHHGGGTCCSCCCCTTCCCHH
T ss_pred             cccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHc-CCHHHHHHHHhcCCcccccCCCCCCcc
Confidence            3344455566666666666666666666666666666666666666666655 55666666666666555431       


Q ss_pred             ------------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q 010851           82 ------------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA  137 (499)
Q Consensus        82 ------------------------~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~  137 (499)
                                              .+..|.||||+|+..++.+++++++..+...+..|..|.|||+.|+..++.+++++
T Consensus       203 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~  282 (408)
T d1n11a_         203 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV  282 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHH
Confidence                                    14567788888888888999999999988888899999999999999999999999


Q ss_pred             HHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhcCCCcc
Q 010851          138 IESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKF  217 (499)
Q Consensus       138 Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~  217 (499)
                      |+++|++++  ..+..+.|||| .++..++.++++++++.|++++.++..|.+++|.+.+.+....+..|+..       
T Consensus       283 Ll~~g~~~~--~~~~~~~t~L~-~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-------  352 (408)
T d1n11a_         283 LIKHGVMVD--ATTRMGYTPLH-VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-------  352 (408)
T ss_dssp             HHHHTCCTT--CCCSSCCCHHH-HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-------
T ss_pred             HHHCCCccc--cccccccccch-hhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-------
Confidence            999999988  88889999999 89999999999999999999999999999999999988887766665543       


Q ss_pred             CCCCCceeeecCCCcchhHhHhhCCC
Q 010851          218 HQPDPSLTIYDQATKIRYKFASANEG  243 (499)
Q Consensus       218 ~~~~~~~~~~d~~g~tpl~~a~~~~~  243 (499)
                         +++++++|+.|+||||+|+.++.
T Consensus       353 ---GAd~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         353 ---GASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             ---TCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             ---CCCCCCCCCCCCCHHHHHHHcCC
Confidence               34488899999999999997544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.4e-26  Score=220.57  Aligned_cols=167  Identities=19%  Similarity=0.154  Sum_probs=141.6

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcC---CCCCccC-
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYR-   81 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~g---a~~~~~~-   81 (499)
                      .|+++|.+|.+|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++++..+   ..++..+ 
T Consensus        63 ~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          63 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             cCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhh-cchhhhhhhhhccccccccccccc
Confidence            3578999999999999999999999999999999999999999999999999987 8888888776432   1111110 


Q ss_pred             -----------------------------------------CCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCcccCCCC
Q 010851           82 -----------------------------------------PGGRGGTPLHHAAKRGLEPTVRLLL-SCGANALVRNDDC  119 (499)
Q Consensus        82 -----------------------------------------~d~~g~TpL~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g  119 (499)
                                                               .+..|+||||+++..++.+++++++ ..+.+++.+|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCC
Confidence                                                     2446888999999999988887644 6678888889999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHh
Q 010851          120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (499)
Q Consensus       120 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~  176 (499)
                      +||||+|+..|+.++|++|+++|++++  .+|.+|+|||| +|+..|+.+++++|++
T Consensus       222 ~tpL~~A~~~g~~~iv~~Ll~~gadin--~~d~~G~T~L~-~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         222 KTPIMLAAQEGRIEVVMYLIQQGASVE--AVDATDHTARQ-LAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCSSSCCHHH-HHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHH
Confidence            999999999999999999999999988  88999999999 8999999999998875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=1.4e-26  Score=222.51  Aligned_cols=165  Identities=25%  Similarity=0.328  Sum_probs=149.9

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccC----
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR----   81 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~----   81 (499)
                      .|+++|.+|.+|.||||+|+..|+.++|++|+++|.+.+..+..+.||||+|+.. ++.++++.|+++|+..+..+    
T Consensus        62 ~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~  140 (291)
T d1s70b_          62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNSEGD  140 (291)
T ss_dssp             HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc-cccchhhcccccCcccccccccCc
Confidence            3678899999999999999999999999999999999999999999999999998 99999999999988766542    


Q ss_pred             ------------------------------------------------------CCCCCCcHHHHHHHcCCHHHHHHHHH
Q 010851           82 ------------------------------------------------------PGGRGGTPLHHAAKRGLEPTVRLLLS  107 (499)
Q Consensus        82 ------------------------------------------------------~d~~g~TpL~~A~~~g~~~~v~~Ll~  107 (499)
                                                                            .+..|.||||+|+..|+.+++++|++
T Consensus       141 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  220 (291)
T d1s70b_         141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (291)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccc
Confidence                                                                  23458899999999999999999999


Q ss_pred             CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcC
Q 010851          108 CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (499)
Q Consensus       108 ~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~g  178 (499)
                      .|++++.++..|+||||+|+..|+.++|++|+++|++++  .+|..|+|||| +|++    +++++|.+.+
T Consensus       221 ~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~--~~d~~G~TaL~-~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--AVNKVGQTAFD-VADE----DILGYLEELQ  284 (291)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-SCCS----GGGHHHHHHH
T ss_pred             ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHH----HHHHHHHHHh
Confidence            999999999999999999999999999999999999999  89999999999 8865    4666665543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-26  Score=194.37  Aligned_cols=121  Identities=28%  Similarity=0.336  Sum_probs=111.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCC-cHHHHHH
Q 010851           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG-TPLHHAA   94 (499)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~-TpL~~A~   94 (499)
                      .+.++||+|+..|+.++|++|+++|+++|.+|..|.||||+|+ . |+.+++++|+++|++++.+  +..|. ||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~-g~~~~v~~Ll~~ga~~~~~--~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-c-ccccccccccccccccccc--ccccccccccccc
Confidence            3568999999999999999999999999999999999999776 5 8899999999999999998  55554 6999999


Q ss_pred             HcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010851           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (499)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  140 (499)
                      ..|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|+.
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=1e-27  Score=236.98  Aligned_cols=136  Identities=15%  Similarity=0.169  Sum_probs=118.1

Q ss_pred             ccccCCCchHHHHHHHHcCCHHHHHH---HHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851           10 QHQQRQSKDELLYQWVIAGDVDAIRA---LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus        10 ~~~~d~~g~t~L~~Aa~~g~~~~v~~---Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      .+.++..|.|+||+|+.+|+.+++++   |++.|+++|.+|.+|+||||+||++ |+.++|++|+++|++++..+.+.+|
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~-G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCccccccccCC
Confidence            45678899999999999999887765   7899999999999999999999998 9999999999999999987434569


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  146 (499)
                      +||||+|+.+||.++|++|++.|++.   +..+.+|.||||.|+.+|+.++|++|+++|++++
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999765   3445667888899999999999999999998876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3.7e-27  Score=195.42  Aligned_cols=106  Identities=31%  Similarity=0.384  Sum_probs=92.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g   97 (499)
                      +|||++|++.|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~-~~~~~~~~ll~~g~din~~--d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH-STTTHHHHHHHSSCTTTCC--SSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccc-cccccccccccccceeeec--ccccccchhhhhhcC
Confidence            5788888888888888888888888888888888888888887 8888888888888888887  778888888888888


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCCHHHHH
Q 010851           98 LEPTVRLLLSCGANALVRNDDCHTALGVA  126 (499)
Q Consensus        98 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A  126 (499)
                      +.+++++|+++|+|++.+|.+|.||||+|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            88888888888888888888888888877

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=2.3e-25  Score=203.11  Aligned_cols=170  Identities=24%  Similarity=0.187  Sum_probs=154.0

Q ss_pred             HHHHHHHHHcCCCCcc-cCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC-----------
Q 010851           30 VDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG-----------   97 (499)
Q Consensus        30 ~~~v~~Ll~~g~~~~~-~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g-----------   97 (499)
                      .|+|++||++|+++|. .|.+|.||||+||.+ |+.+++++|+++|++++.+  +..+.++++.++..+           
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~-g~~e~v~~Ll~~g~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARF-ARADAAKRLLDAGADANSQ--DNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHc-CCHHHHHHHHhhccccccc--cccccccccccccccccccccccccc
Confidence            5899999999999997 589999999999998 9999999999999999998  777777777776554           


Q ss_pred             -----------------------CHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccccccC
Q 010851           98 -----------------------LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG  154 (499)
Q Consensus        98 -----------------------~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g  154 (499)
                                             .....+.|+..+++++.++..|.|||++++..+..++++.|++++.+++  .+|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD--AQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc--cccccc
Confidence                                   3345667888899999999999999999999999999999999999998  899999


Q ss_pred             CCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHHH
Q 010851          155 PSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (499)
Q Consensus       155 ~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~  205 (499)
                      .|||| +|+..|+.+++++|+++|++++.++..+.+|++++.+.+....+.
T Consensus       157 ~TpL~-~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         157 ETPLF-LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             CCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccc-hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHh
Confidence            99999 899999999999999999999999999999999999888866554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.9e-26  Score=190.07  Aligned_cols=122  Identities=25%  Similarity=0.289  Sum_probs=108.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcC
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g   97 (499)
                      .++||.|+..|+.++|++|+++|+++|.+|.+|+||||+|+.. |+.+++++|+++|++++.+  |.+|+||||+|+.+|
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~-~~~~~~~~ll~~g~~~~~~--d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHTT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccc-ccccccccccccccccccc--cccCcccccccchhh
Confidence            3689999999999999999999999999999999999999998 8999999999999999988  889999999999999


Q ss_pred             CHHHHHHHHHCCCCCcccCC-CCCCHHHHH--HHcCCHHHHHHHHHcc
Q 010851           98 LEPTVRLLLSCGANALVRND-DCHTALGVA--RIKGHINVVRAIESHI  142 (499)
Q Consensus        98 ~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A--~~~g~~~~v~~Ll~~g  142 (499)
                      +.++|++|+++|++++..+. .|.|+++++  ...|+.+++++|++.+
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999987764 588887765  5678899999998754

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.5e-25  Score=184.14  Aligned_cols=120  Identities=22%  Similarity=0.254  Sum_probs=113.5

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCC-CHHHHHHH
Q 010851           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH-TALGVARI  128 (499)
Q Consensus        50 g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpL~~A~~  128 (499)
                      +.++||+|+.+ |+.+++++|+++|+++|.+  |..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|++
T Consensus         3 ~~~~L~~Aa~~-G~~~~v~~Ll~~gad~n~~--~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHC-CCHHHHHHHHHcCCccccc--cccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            56899999998 9999999999999999998  889999999775 7999999999999999999998876 69999999


Q ss_pred             cCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHh
Q 010851          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (499)
Q Consensus       129 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~  176 (499)
                      .|+.+++++|+++|++++  .+|..|+|||| +|+..|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~~--~~d~~G~T~l~-~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc--cccCCCCCHHH-HHHHcCCHHHHHHHHh
Confidence            999999999999999999  99999999999 9999999999999975

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.7e-25  Score=211.58  Aligned_cols=181  Identities=10%  Similarity=0.046  Sum_probs=115.8

Q ss_pred             ccCcccc-CCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCc-------HHHHHHHHHcCCCCC
Q 010851            7 SMNQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-------INVAKTLIELGANIN   78 (499)
Q Consensus         7 ~~~~~~~-d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~-------~~~v~~Ll~~ga~~~   78 (499)
                      ++++|.. |.+|+||||+||..|+.++|++||++|++++.+|..|+||||+||.. ++       .+++++|.   .+++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHG---GGGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhc-ccchhhhhHHHHHHHHh---hhhh
Confidence            4566655 89999999999999999999999999999999999999999999975 43       23444443   3455


Q ss_pred             ccCCCCCCCcHHHHHHHcCC----HH--------HHHHHHHCCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHH-Hc--c
Q 010851           79 AYRPGGRGGTPLHHAAKRGL----EP--------TVRLLLSCGAN-ALVRNDDCHTALGVARIKGHINVVRAIE-SH--I  142 (499)
Q Consensus        79 ~~~~d~~g~TpL~~A~~~g~----~~--------~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll-~~--g  142 (499)
                      .+  |..|+||||+++..+.    ..        ++.+++..+.. .......+.++++.+.......++..+. ..  +
T Consensus       172 ~~--d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         172 LE--DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             EE--CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hc--ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            55  7889999998886543    22        34455555433 2333444555555554443333322221 11  1


Q ss_pred             cccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccc
Q 010851          143 CYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL  196 (499)
Q Consensus       143 ~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~  196 (499)
                      ..++  .+|..|+|||| +|++.|+.+++++|+++|++++.++..|.+++++++
T Consensus       250 ~~in--~~D~~G~TpLh-~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 NMLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCcc--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            1244  66777888888 777888888888888888888877777777777664

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.5e-24  Score=186.42  Aligned_cols=131  Identities=25%  Similarity=0.364  Sum_probs=124.0

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCC
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~   85 (499)
                      .+.+++.+|..|+||||+|+ .|+.+++++|++++.+++..+..|.+||++++.. ++.+++++++++|+++|.+  |..
T Consensus        25 ~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~n~~--~~~  100 (156)
T d1bd8a_          25 ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGT  100 (156)
T ss_dssp             TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTT
T ss_pred             CCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--cCC
Confidence            35678899999999999987 5899999999999999999999999999999998 9999999999999999998  889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 010851           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (499)
Q Consensus        86 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  141 (499)
                      |.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|++|
T Consensus       101 ~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         101 GALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999887 6899999999999999999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.4e-25  Score=185.86  Aligned_cols=107  Identities=24%  Similarity=0.258  Sum_probs=103.1

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC
Q 010851           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (499)
Q Consensus        51 ~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g  130 (499)
                      .|||++|+++ |+.++|++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus         3 ~tpL~~A~~~-g~~~~v~~Ll~~g~d~n~~--~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHTTTCCCCCC--SSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHC-CCHHHHHHHHHhhhccccc--cccccccccccccccccccccccccccceeeecccccccchhhhhhcC
Confidence            4899999998 9999999999999999998  889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcccccccccccccCCCHHHHHhh
Q 010851          131 HINVVRAIESHICYFCGWLREFYGPSFLEALAP  163 (499)
Q Consensus       131 ~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~  163 (499)
                      +.+++++|+++|++++  .+|.+|+|||| +|.
T Consensus        80 ~~~~v~~Ll~~Gad~~--~~d~~G~t~l~-~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSKGADKT--VKGPDGLTALE-ATD  109 (118)
T ss_dssp             CCHHHHHHHTTCCCSS--SSSSSTCCCCC-TCS
T ss_pred             chhhhhhhhcccccce--eeCCCCCCHHH-HHh
Confidence            9999999999999999  99999999999 763

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.8e-23  Score=180.99  Aligned_cols=126  Identities=19%  Similarity=0.217  Sum_probs=115.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccc------CCCCChHHHHHHHc--CCcHHHHHHHHHcCCCCCccCCCCCCCcH
Q 010851           18 DELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGGRGGTP   89 (499)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------d~~g~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   89 (499)
                      -..|+.|++.+++..+..++..|++++..      +..|+||||+|++.  .|+.+++++|+++|+++|.+  |..|+||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~--d~~g~Tp   84 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA   84 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhh--hhhhccc
Confidence            34567889999999999999999887655      67899999999974  26789999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 010851           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF  145 (499)
Q Consensus        90 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  145 (499)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++.++..
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999987643

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.1e-24  Score=178.16  Aligned_cols=121  Identities=15%  Similarity=0.099  Sum_probs=112.1

Q ss_pred             hHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCC
Q 010851           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (499)
Q Consensus        52 TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~  131 (499)
                      ++||.||.. |+.++|++|+++|+|+|.+  |..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~-G~~~~v~~Ll~~g~d~n~~--d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccccccccccccccccccccccccccccccccccccCcccccccchhhH
Confidence            689999998 9999999999999999998  8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccccccccccc-ccCCCHHHHHh--hhcCCHHHHHHHHhcC
Q 010851          132 INVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCG  178 (499)
Q Consensus       132 ~~~v~~Ll~~g~~~~~~~~~-~~g~t~Lh~~A--~~~~~~~~~~~Ll~~g  178 (499)
                      .++|++|+++|++++  .++ ..|+|+++ ++  ...|+.+++++|+..+
T Consensus        80 ~~~v~~Ll~~ga~v~--~~~~~~~~~~~~-~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHHcChHHHHHHHHhHH
Confidence            999999999999998  555 46899987 44  5678899999998754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.2e-23  Score=189.07  Aligned_cols=162  Identities=24%  Similarity=0.224  Sum_probs=144.0

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHcCCcHHHHHHHHHcCC----------
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----------   75 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga----------   75 (499)
                      .+.+++.+|..|+||||+|+..|+.++|++|+++|++++..+..|.++++.|... ++.++++.+.....          
T Consensus        29 ~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~  107 (228)
T d1k1aa_          29 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARN  107 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred             CCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccccc-ccccchhhhhhccccccccccccc
Confidence            4568889999999999999999999999999999999999999999999999886 77777776654322          


Q ss_pred             ---------------------------CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHH
Q 010851           76 ---------------------------NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (499)
Q Consensus        76 ---------------------------~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~  128 (499)
                                                 +.... .+..|.++|+.|+..+...+++.+++.|.+++.+|..|.||||+|+.
T Consensus       108 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~  186 (228)
T d1k1aa_         108 YDGLTALHVAVNTECQETVQLLLERGADIDAV-DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG  186 (228)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhccccccccc-cccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHH
Confidence                                       11111 24568899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHH
Q 010851          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (499)
Q Consensus       129 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~  172 (499)
                      .|+.+++++|+++|++++  .+|.+|+|||| +|++.++.++++
T Consensus       187 ~g~~~~v~~Ll~~Gad~n--~~d~~G~TpL~-~A~~~~~~divk  227 (228)
T d1k1aa_         187 RGLLPLVRTLVRSGADSS--LKNCHNDTPLM-VARSRRVIDILR  227 (228)
T ss_dssp             HTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-TCSSHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHhCCCccccC
Confidence            999999999999999999  99999999999 999999988875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.3e-23  Score=178.44  Aligned_cols=149  Identities=17%  Similarity=0.136  Sum_probs=139.2

Q ss_pred             hHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcCC
Q 010851           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (499)
Q Consensus        52 TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~  131 (499)
                      +|||+||.. |+.++|++|+++|+++|.+  |..|+||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++
T Consensus         3 ~~Lh~Aa~~-g~~~~v~~Ll~~g~d~n~~--d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAAR-GDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHH-TCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHCCCCcCcc--CCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            899999998 9999999999999999998  889999999886 789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCC-CCCCCCcccccccCccccccChHHHHHH
Q 010851          132 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT-ANPSKPLRFELVIYPSLQDVQPRAVIAL  207 (499)
Q Consensus       132 ~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga-~~~~~~~~~~~~l~~~~~~~~~~~~~~l  207 (499)
                      .++++.|+.++.+++  ..+..|.++|| +|+..++.+++++|+++++ +.+.++..++++++++........+..|
T Consensus        79 ~~~~~~l~~~~~~~~--~~~~~~~~~l~-~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          79 LDTLQTLLEFQADVN--IEDNEGNLPLH-LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccc--ccccccccccc-cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999998  88999999999 9999999999999999987 7888888899999999888877665443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=8.5e-25  Score=215.80  Aligned_cols=170  Identities=14%  Similarity=0.039  Sum_probs=134.5

Q ss_pred             cccCccccCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccC--CCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccC-C
Q 010851            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYR-P   82 (499)
Q Consensus         6 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d--~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~-~   82 (499)
                      .+.++|.+|.+|+||||+||++|+.++|++|+++|++++..+  .+|+||||+||.+ |+.++|++|++.|++....+ .
T Consensus       115 ~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~-g~~~iv~~Ll~~~~~~~~~~~~  193 (346)
T d2ajaa1         115 SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN-GHLHVLNRLCELAPTEATAMIQ  193 (346)
T ss_dssp             CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT-TCHHHHHHHHHSCGGGHHHHHH
T ss_pred             CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH-hhHHHHHHHHHcCCcccccccc
Confidence            357788899999999999999999999999999999998876  4699999999998 99999999999998753221 0


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc---------------------------------CCC-----------
Q 010851           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR---------------------------------NDD-----------  118 (499)
Q Consensus        83 d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~---------------------------------d~~-----------  118 (499)
                      +.+|.||||.|+.+|+.++|++|++.|++++..                                 ...           
T Consensus       194 ~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~  273 (346)
T d2ajaa1         194 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC  273 (346)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHH
T ss_pred             cCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccc
Confidence            345778888899999999999999987654321                                 111           


Q ss_pred             -----CCCHHHHHHHcCCHHHHHHHHHcccccc---cccccccCCCHHHHHhhhcCCHHHHHHHHhc
Q 010851          119 -----CHTALGVARIKGHINVVRAIESHICYFC---GWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (499)
Q Consensus       119 -----g~tpL~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~  177 (499)
                           +.++|+.|+..++.+++++|++.+....   ....+.+|+|||| +|++.|+.+++++||+.
T Consensus       274 ~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh-lA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR-LALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH-HHHHHTCTTHHHHHTTS
T ss_pred             cccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH-HHHHcCcHHHHHHHhCC
Confidence                 1256777777888999999998775432   0134467899999 99999999999999864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.3e-22  Score=196.07  Aligned_cols=164  Identities=15%  Similarity=-0.021  Sum_probs=109.3

Q ss_pred             cCCCCccc-CCCCChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCH-------HHHHHHHHCCC
Q 010851           39 QGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE-------PTVRLLLSCGA  110 (499)
Q Consensus        39 ~g~~~~~~-d~~g~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~-------~~v~~Ll~~ga  110 (499)
                      .+.++|.. |.+|+||||+||.. |+.++|++||++|++++.+  |..|+||||+|+..++.       +++++|.   .
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~-g~~~~v~~Ll~~gad~~~~--d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~  168 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLY---P  168 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---G
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcC--CcccccHHHHhhhcccchhhhhHHHHHHHHh---h
Confidence            56788865 89999999999997 9999999999999999998  88999999999987652       4444443   3


Q ss_pred             CCcccCCCCCCHHHHHHHcCC----HH--------HHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHH-----HH
Q 010851          111 NALVRNDDCHTALGVARIKGH----IN--------VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW-----VV  173 (499)
Q Consensus       111 ~~~~~d~~g~tpL~~A~~~g~----~~--------~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~-----~~  173 (499)
                      .+..+|..|+||||+++..+.    ..        ++.+++..+.... ......+.++++ .+.........     ..
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  246 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI-QSGTNEKESKPN-DKNGERKDSILENLDLKW  246 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE-EEC-----------------CHHHHHCSHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcch-hcccccccchhH-HHHhcchHHHHHHHhhHH
Confidence            466788999999999886543    22        3445555554433 244455566666 33322222221     22


Q ss_pred             HHhcCCCCCCCCcccccccCccccccChHHHHHHHHhhc
Q 010851          174 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI  212 (499)
Q Consensus       174 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  212 (499)
                      ++...  +|.++..|++++|++.+.+....+..|+....
T Consensus       247 ~~~~~--in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA  283 (301)
T d1sw6a_         247 IIANM--LNAQDSNGDTCLNIAARLGNISIVDALLDYGA  283 (301)
T ss_dssp             HHHHT--TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHhcC--ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            33332  67788899999999999999998888885433

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.2e-22  Score=172.86  Aligned_cols=147  Identities=21%  Similarity=0.226  Sum_probs=138.2

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCCHHHHHHHcC
Q 010851           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (499)
Q Consensus        51 ~TpLh~Aa~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g  130 (499)
                      .||||.||+. |+.++|++||++|++++ .  |..|+||||+|+..++.++++.++.........+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~-g~~~~v~~LL~~ga~~~-~--~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARA-GQDDEVRILMANGAPFT-T--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHH-TCHHHHHHHHHHTCCCC-C--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHC-CCHHHHHHHHHcCCCcc-c--ccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            4999999998 99999999999999987 3  789999999999999999999999999888888899999999999999


Q ss_pred             CHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCCCCCCcccccccCccccccChHHH
Q 010851          131 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  204 (499)
Q Consensus       131 ~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  204 (499)
                      +.+++++|..++++.+  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.++++++...+....+
T Consensus        79 ~~~~~~~l~~~~~~~~--~~~~~g~T~L~-~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          79 HANIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             CHHHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cceeeecccccCCccc--cccccCchHHH-hhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999998  89999999999 99999999999999999999999999999999999988876544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.1e-22  Score=187.54  Aligned_cols=137  Identities=23%  Similarity=0.246  Sum_probs=124.9

Q ss_pred             cccCCCchHHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHc---CCcHHHHHHHHHcCCCCCccCCCCCC
Q 010851           11 HQQRQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMD---SGLINVAKTLIELGANINAYRPGGRG   86 (499)
Q Consensus        11 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpLh~Aa~~---~g~~~~v~~Ll~~ga~~~~~~~d~~g   86 (499)
                      +..+..|.||||+|++.|+.+++++|++ .|++++..+..|.++++.+...   ++..+++++|+++|++++.+  |..|
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~--~~~g  219 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR--GERG  219 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC--CTTS
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCcc--CCCC
Confidence            3456779999999999999999999997 4899999999999988877653   24568999999999999988  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc
Q 010851           87 GTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE  151 (499)
Q Consensus        87 ~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  151 (499)
                      .||||+|+..|+.++|++||+. |++++.+|.+|.||||+|++.|+.++|++|+++||+++  .+|
T Consensus       220 ~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n--~~d  283 (285)
T d1wdya_         220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD--CGD  283 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC--CSS
T ss_pred             CCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccc
Confidence            9999999999999999999985 89999999999999999999999999999999999998  666

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.3e-21  Score=165.26  Aligned_cols=125  Identities=14%  Similarity=0.063  Sum_probs=112.0

Q ss_pred             HHHHHHHcCCcHHHHHHHHHcCCCCCcc----CCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCcccCCCCCCHHHH
Q 010851           53 PLIVACMDSGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALGV  125 (499)
Q Consensus        53 pLh~Aa~~~g~~~~v~~Ll~~ga~~~~~----~~d~~g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~  125 (499)
                      .|+.|++. +....+..++..|++++..    ..+..|+||||+|++.   ++.++|++|+++|++++.+|.+|+||||+
T Consensus         9 ~L~~Av~~-~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKT-RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHh-CCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            45677776 8888888899999887654    1256799999999985   67899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcccccccccccccCCCHHHHHhhhcCCHHHHHHHHhcCCCC
Q 010851          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (499)
Q Consensus       126 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~Lh~~A~~~~~~~~~~~Ll~~ga~~  181 (499)
                      |+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|++.++..
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccCcccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999999  99999999999 999999999999999988754

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.4e-11  Score=89.70  Aligned_cols=50  Identities=34%  Similarity=0.785  Sum_probs=43.6

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccceeEe
Q 010851          446 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRL  496 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~~  496 (499)
                      ..|.||++...+++++||||.| |..|+..|... ...||+||..|...-.|
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEE-CHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCccCCCcCCCeEEeCCCCee-eHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            4799999999999999999999 99999998764 45799999999865443

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.02  E-value=4.2e-11  Score=86.61  Aligned_cols=49  Identities=29%  Similarity=0.810  Sum_probs=42.7

Q ss_pred             cccccccccCCce-EEeCCCCchhhHHhHHHHhccCCccccccccccceeE
Q 010851          446 SSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  495 (499)
Q Consensus       446 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  495 (499)
                      ..|+||++.+.+. +.+||||.| |..|+.+|.+.+..||+||.+|...+.
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~F-c~~Ci~~w~~~~~~CP~CR~~i~~~~~   55 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCccCCcCccCCcEEeCCCCcC-cHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence            5899999998775 447999999 999999999888899999999976554

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=3.2e-10  Score=85.15  Aligned_cols=46  Identities=28%  Similarity=0.552  Sum_probs=41.3

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  491 (499)
                      ...|+||++.+.+++.++|||.| |..|+.++.+. ...||+||.++.
T Consensus        23 ~l~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~p~~   69 (86)
T d1rmda2          23 SISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCF   69 (86)
T ss_dssp             HTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CcCCccCCcchhcceecCCCChh-hHHHHHHHHhhCCCcCcccCCCCC
Confidence            35899999999999999999999 99999998754 568999999875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=5.5e-11  Score=81.79  Aligned_cols=44  Identities=25%  Similarity=0.591  Sum_probs=38.2

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          444 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      +...|+||++.+.+++.+||||.| |..|+.++   +..||+||+++.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~f-C~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHH-hHHHHHcC---CCcCcCCCCccc
Confidence            346999999999999999999999 99998654   347999999886

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.84  E-value=5.3e-10  Score=76.61  Aligned_cols=45  Identities=22%  Similarity=0.657  Sum_probs=37.9

Q ss_pred             ccccccccccCCc---eEEe-CCCCchhhHHhHHHHhccCCccccccccc
Q 010851          445 SSSCVICWEAPVE---GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKI  490 (499)
Q Consensus       445 ~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i  490 (499)
                      ..+|+||++.+..   +..+ +|+|.| |..|+.+|.+.+..||+||.+|
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~F-h~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcc-cHHHHHHHHHhCCcCCCCCCEe
Confidence            3579999998753   3444 699999 9999999998888999999876

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=9e-10  Score=75.92  Aligned_cols=49  Identities=16%  Similarity=0.339  Sum_probs=43.5

Q ss_pred             ccccccccCCceEEeC-CCCchhhHHhHHHHhccCCcccccccccc--ceeEe
Q 010851          447 SCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRL  496 (499)
Q Consensus       447 ~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~  496 (499)
                      .|+||++...+++.++ |||.| |++|+.+|...++.||+||.++.  +.+++
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~f-c~~cI~~~l~~~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred             CCccCCchHHhcCccCCCCCcc-cHHHHHHHHhhccCCCccCCcCCHHhceeC
Confidence            6999999999999885 99999 99999999988889999999986  45544

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.3e-09  Score=77.60  Aligned_cols=47  Identities=28%  Similarity=0.710  Sum_probs=37.3

Q ss_pred             ccccccccccC-----CceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          445 SSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       445 ~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      +..|+||++..     ...++.+|||.| |..|+..|... ...||+||+++..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHh-hHHHHHHHhCcCcCCCCCCCcCccc
Confidence            36999999752     234566999999 99999999754 4579999999853

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.1e-09  Score=74.20  Aligned_cols=45  Identities=29%  Similarity=0.652  Sum_probs=36.4

Q ss_pred             ccccccccCCc----eEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          447 SCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       447 ~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      +|+||++....    ....+|||.| |..|+.+|... +..||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~-c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCC-CHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCcc-chHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999997632    2345899999 99999999875 5579999998863

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.9e-09  Score=84.74  Aligned_cols=46  Identities=30%  Similarity=0.768  Sum_probs=40.5

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccC---Ccccccccccc
Q 010851          445 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  491 (499)
Q Consensus       445 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i~  491 (499)
                      ...|+||++.+.+++.++|||.| |..|+..|....   ..||+||.++.
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CcCCCccCchhCCeEEcCCCCch-hhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            35899999999999999999999 999999987543   37999999885

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.58  E-value=1.8e-08  Score=74.60  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=43.2

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      .++..|+||++...+++.++|||.| |..|+.+|... ...||.|+.++..
T Consensus         6 P~~l~CpIc~~~m~dPV~~~cgh~f-c~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CccCCCcCcCchhhCceEccCCCcc-hHHHHHHHHHHCCCCCCcccccCCc
Confidence            3457999999999999999999999 99999998876 4579999999864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1.2e-08  Score=75.97  Aligned_cols=49  Identities=20%  Similarity=0.123  Sum_probs=42.9

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  492 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  492 (499)
                      .+...|+||++...+++.++|||.| |..|+.++... +..||+||.++..
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGhtf-c~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CccccCcCcCchhhhhcccCCcCee-cHHHHHHHHhcCCccCCCccccccc
Confidence            4557999999999999999999999 99999998764 4579999998863

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.9e-08  Score=73.88  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          458 GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       458 ~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      ++.++|||.| |..|+.+|.+.+..||+||+++.
T Consensus        52 ~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCcc-cHHHHHHHHHHCCcCCCCCCccc
Confidence            5677999999 99999999998889999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=5.6e-08  Score=77.68  Aligned_cols=45  Identities=29%  Similarity=0.667  Sum_probs=36.0

Q ss_pred             cccccccccCCc------------------eEEeCCCCchhhHHhHHHHhccC-----Ccccccccccc
Q 010851          446 SSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKK-----GDCPVCRTKIN  491 (499)
Q Consensus       446 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~-----~~Cp~Cr~~i~  491 (499)
                      ..|.||++....                  +.+++|||.| |..|+..|...+     ..||+||+.+.
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~F-H~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChh-hHHHHHHHHHhcCcCCCCccccccchhc
Confidence            579999987532                  4567999999 999999988642     36999998774

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.7e-08  Score=78.22  Aligned_cols=45  Identities=31%  Similarity=0.693  Sum_probs=38.6

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCcccccccccc
Q 010851          444 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       444 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      +...|+||++.+.+++.+ +|||.| |..|+.+|..  ..||.||.++.
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hcCCCccCCchhhcCceeCCCCCch-hHHHHHHHHh--ccccccCCcCc
Confidence            346899999999999875 899999 9999988864  35999998875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.3e-07  Score=69.37  Aligned_cols=48  Identities=10%  Similarity=0.023  Sum_probs=43.0

Q ss_pred             CCccccccccccCCceEEeCCCC-chhhHHhHHHHhccCCcccccccccc
Q 010851          443 GSSSSCVICWEAPVEGACVPCGH-MAGCMSCLSEIKAKKGDCPVCRTKIN  491 (499)
Q Consensus       443 ~~~~~C~iC~~~~~~~~~~pCgH-~~~C~~C~~~~~~~~~~Cp~Cr~~i~  491 (499)
                      .++..|+||.+...++|.+||+| .| |+.|+.+|...+..||+||.++.
T Consensus        20 P~~f~CPI~~~lm~dPV~~~~~~~ty-~r~~I~~~l~~~~~~P~~~~~l~   68 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             cHHhCCcCchhHHHHHHhcccccchh-hHHHHHHHHHhcCCccccccccc
Confidence            44579999999999999999886 57 99999999887889999999986

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.12  E-value=4e-07  Score=63.30  Aligned_cols=49  Identities=29%  Similarity=0.491  Sum_probs=39.6

Q ss_pred             CCCccccccccccCCceEEeCCC-----CchhhHHhHHHHhcc--CCcccccccccc
Q 010851          442 DGSSSSCVICWEAPVEGACVPCG-----HMAGCMSCLSEIKAK--KGDCPVCRTKIN  491 (499)
Q Consensus       442 ~~~~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  491 (499)
                      +++...|.||++...+....||+     |.| |..|+.+|...  +..||+||+++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~-H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEE-cHHHHHHHHhhCCCCCCcccCCeee
Confidence            34557999999988777777775     999 99999998754  458999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=8.6e-05  Score=56.20  Aligned_cols=42  Identities=21%  Similarity=0.483  Sum_probs=31.0

Q ss_pred             cccccccccCC--c-eEEeCCCCchhhHHhHHHHhcc-----C---Cccccccc
Q 010851          446 SSCVICWEAPV--E-GACVPCGHMAGCMSCLSEIKAK-----K---GDCPVCRT  488 (499)
Q Consensus       446 ~~C~iC~~~~~--~-~~~~pCgH~~~C~~C~~~~~~~-----~---~~Cp~Cr~  488 (499)
                      ..|.||++...  + +.+.+|||.| |..|+..+...     .   -.||.|+-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~f-C~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEe-CCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            59999999764  3 3455899999 99999876542     1   26998653

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.024  Score=38.30  Aligned_cols=31  Identities=32%  Similarity=0.654  Sum_probs=27.0

Q ss_pred             cccccccccCCceEEeCCC----CchhhHHhHHHHh
Q 010851          446 SSCVICWEAPVEGACVPCG----HMAGCMSCLSEIK  477 (499)
Q Consensus       446 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~  477 (499)
                      ..|.+|.|+..+.-|+.|-    |.| |+.|...-.
T Consensus         9 l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~si   43 (80)
T d2cs3a1           9 LCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESI   43 (80)
T ss_dssp             CCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHH
T ss_pred             eeeeeehhhhcCCceEeCCCCcCCce-eccccHHHH
Confidence            5999999999999998884    999 999987643